HHsearch alignment for GI: 254781047 and conserved domain: TIGR00643
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=92.53 E-value=0.15 Score=29.86 Aligned_cols=45 Identities=33% Similarity=0.440 Sum_probs=26.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 4887789899999999999999986135433322566431024666666886499888887728999999
Q gi|254781047|r 16 DKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNL 85 (404)
Q Consensus 16 ~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdl 85 (404)
T Consensus 303 ~LPF~LT~aQ~r~v~EI~---~DL~~~----------------------~pMnRLlQGDVGSGKT~VA~l 347 (721)
T TIGR00643 303 SLPFELTRAQKRVVKEIL---QDLKSD----------------------VPMNRLLQGDVGSGKTLVAAL 347 (721)
T ss_pred CCCCCCCHHHHHHHHHHH---HHHCCC----------------------CCCCCCCCCCCCCHHHHHHHH
T ss_conf 288877677899999999---861478----------------------753222110106638999999