HHsearch alignment for GI: 254781047 and conserved domain: TIGR00643

>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=92.53  E-value=0.15  Score=29.86  Aligned_cols=45  Identities=33%  Similarity=0.440  Sum_probs=26.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf             4887789899999999999999986135433322566431024666666886499888887728999999
Q gi|254781047|r   16 DKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNL   85 (404)
Q Consensus        16 ~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdl   85 (404)
T Consensus       303 ~LPF~LT~aQ~r~v~EI~---~DL~~~----------------------~pMnRLlQGDVGSGKT~VA~l  347 (721)
T TIGR00643       303 SLPFELTRAQKRVVKEIL---QDLKSD----------------------VPMNRLLQGDVGSGKTLVAAL  347 (721)
T ss_pred             CCCCCCCHHHHHHHHHHH---HHHCCC----------------------CCCCCCCCCCCCCHHHHHHHH
T ss_conf             288877677899999999---861478----------------------753222110106638999999