HHsearch alignment for GI: 254781047 and conserved domain: TIGR01242
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=97.53 E-value=5.4e-05 Score=51.77 Aligned_cols=138 Identities=20% Similarity=0.250 Sum_probs=74.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCHHHHHHHHHHCCC--
Q ss_conf 6886499888887728999999998578111468889999999999999-9713112246655780789999996138--
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRII-MYRKKIEFGEILESDPIPLVASSIALES-- 140 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~-~~~~~~~~~~~~~~dpl~~va~~l~~~~-- 140 (404)
T Consensus 154 ~PPKGvLLyGPPGtGKTLlAKAvA~et~ATF-Irv--------VgSElV~KyIGE---GA-----rLV~~~F~LAkEKaP 216 (364)
T TIGR01242 154 EPPKGVLLYGPPGTGKTLLAKAVAHETNATF-IRV--------VGSELVRKYIGE---GA-----RLVREVFELAKEKAP 216 (364)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHCCCCCEE-EEE--------EHHHHHHHHHCC---HH-----HHHHHHHHHHHCCCC
T ss_conf 9898657007579768899998631455126-886--------044444444133---16-----899999998530698
Q ss_pred CEEEEEEEEE--------CCCHHHHHHHHHHHHHHH-------CCCEEEEECCCC----HHHHHCCCCCH------HHHH
Q ss_conf 7999842320--------471358889999999985-------496899817868----67752387405------6689
Q gi|254781047|r 141 RVLCFDEFMI--------TNIADAIILSRLFAALFS-------HGCIIVMTSNFI----PENLYKDEINR------NVLV 195 (404)
Q Consensus 141 ~lLCfDEF~V--------~DiaDAmil~rl~~~lf~-------~gv~lV~TSN~~----P~dLY~~GLqR------~~Fl 195 (404)
T Consensus 217 sIiFIDEiDAiaakR~~~~TsGdREV~RTlmQLLAElDGFd~rg~VkviaATNR~DilDPA~LRPGRFDR~IEVPlP~~~ 296 (364)
T TIGR01242 217 SIIFIDEIDAIAAKRVDSSTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPAILRPGRFDRIIEVPLPDFE 296 (364)
T ss_pred CEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHCCCCCCCCCCCCCEEECCCCCCC
T ss_conf 16861013335432114677873157889999997524888767616887207620204321488861325731697832
Q ss_pred HHHHHHHHCCEEEECCCCCHHHH
Q ss_conf 89999985050898047311221
Q gi|254781047|r 196 SFIELLEKKLEIISLDSGQDYRR 218 (404)
Q Consensus 196 PfI~~lk~~~~V~~l~~~~DYR~ 218 (404)
T Consensus 297 GR~eIlkiHTr~~~la~dVdl~~ 319 (364)
T TIGR01242 297 GRLEILKIHTRKMKLAEDVDLEA 319 (364)
T ss_pred CHHHHHHHHHCCCCCCCCCCHHH
T ss_conf 20566555210000123568799