HHsearch alignment for GI: 254781047 and conserved domain: TIGR01242

>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=97.53  E-value=5.4e-05  Score=51.77  Aligned_cols=138  Identities=20%  Similarity=0.250  Sum_probs=74.3

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCHHHHHHHHHHCCC--
Q ss_conf             6886499888887728999999998578111468889999999999999-9713112246655780789999996138--
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRII-MYRKKIEFGEILESDPIPLVASSIALES--  140 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~-~~~~~~~~~~~~~~dpl~~va~~l~~~~--  140 (404)
T Consensus       154 ~PPKGvLLyGPPGtGKTLlAKAvA~et~ATF-Irv--------VgSElV~KyIGE---GA-----rLV~~~F~LAkEKaP  216 (364)
T TIGR01242       154 EPPKGVLLYGPPGTGKTLLAKAVAHETNATF-IRV--------VGSELVRKYIGE---GA-----RLVREVFELAKEKAP  216 (364)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHCCCCCEE-EEE--------EHHHHHHHHHCC---HH-----HHHHHHHHHHHCCCC
T ss_conf             9898657007579768899998631455126-886--------044444444133---16-----899999998530698


Q ss_pred             CEEEEEEEEE--------CCCHHHHHHHHHHHHHHH-------CCCEEEEECCCC----HHHHHCCCCCH------HHHH
Q ss_conf             7999842320--------471358889999999985-------496899817868----67752387405------6689
Q gi|254781047|r  141 RVLCFDEFMI--------TNIADAIILSRLFAALFS-------HGCIIVMTSNFI----PENLYKDEINR------NVLV  195 (404)
Q Consensus       141 ~lLCfDEF~V--------~DiaDAmil~rl~~~lf~-------~gv~lV~TSN~~----P~dLY~~GLqR------~~Fl  195 (404)
T Consensus       217 sIiFIDEiDAiaakR~~~~TsGdREV~RTlmQLLAElDGFd~rg~VkviaATNR~DilDPA~LRPGRFDR~IEVPlP~~~  296 (364)
T TIGR01242       217 SIIFIDEIDAIAAKRVDSSTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPAILRPGRFDRIIEVPLPDFE  296 (364)
T ss_pred             CEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHCCCCCCCCCCCCCEEECCCCCCC
T ss_conf             16861013335432114677873157889999997524888767616887207620204321488861325731697832


Q ss_pred             HHHHHHHHCCEEEECCCCCHHHH
Q ss_conf             89999985050898047311221
Q gi|254781047|r  196 SFIELLEKKLEIISLDSGQDYRR  218 (404)
Q Consensus       196 PfI~~lk~~~~V~~l~~~~DYR~  218 (404)
T Consensus       297 GR~eIlkiHTr~~~la~dVdl~~  319 (364)
T TIGR01242       297 GRLEILKIHTRKMKLAEDVDLEA  319 (364)
T ss_pred             CHHHHHHHHHCCCCCCCCCCHHH
T ss_conf             20566555210000123568799