HHsearch alignment for GI: 254781047 and conserved domain: TIGR02546
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=90.58 E-value=0.18 Score=29.43 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 864998888877289999999985781
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
T Consensus 153 GQRiGIFA~aG~GKSTLL~~i~~g~~A 179 (430)
T TIGR02546 153 GQRIGIFAGAGVGKSTLLGMIARGASA 179 (430)
T ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCC
T ss_conf 530578708886166899998618988