HHsearch alignment for GI: 254781047 and conserved domain: TIGR02759
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128 The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation.
Probab=90.49 E-value=0.26 Score=28.42 Aligned_cols=92 Identities=17% Similarity=0.238 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHCC---EEEECCCCCCCC-----CCHHHHHHHHHHHHHHHCCCCCE-EEECCCCHHHHCCCCCCCCCHH
Q ss_conf 24689999985378---899818987872-----46389998999999982289828-9980789788013467653134
Q gi|254781047|r 287 LSANDFVEIANRFD---VVIINDIPLLKE-----DRKDWIKRFIMLIDVFYEHKIGL-IISSEENIEDLFPYKLRKGAFE 357 (404)
Q Consensus 287 lg~~DYi~Ia~~f~---ti~I~~VP~l~~-----~~~d~arRFI~LID~lYd~kv~L-i~sa~~~~~~L~~~~~~~~~F~ 357 (404)
T Consensus 439 ~A~~~lL~L~pn~~RRiW~i~DELPsLHkLp~L~~~~AE~RKFG---------GC~vlG~QS~aQL~~IY-G~~~-GA~~ 507 (613)
T TIGR02759 439 IASRSLLSLAPNDDRRIWFIMDELPSLHKLPDLAETIAEVRKFG---------GCYVLGIQSFAQLEKIY-GQNA-GAAT 507 (613)
T ss_pred HHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHH---------HHHHHHHCCHHHHHHHC-CCCH-HHHH
T ss_conf 99988734688999727888732335445510453520000324---------68988712367765423-7714-5899
Q ss_pred -HH----HHHHHHHHHCCHHHHHHCCCCCCHHHHHHCCCC
Q ss_conf -89----989887452427889724442693355425863
Q gi|254781047|r 358 -IQ----RTVSRLYEMFSAQYIGKNKIIIDACKILLSNKS 392 (404)
Q Consensus 358 -f~----Rt~SRL~EMqS~~yl~~~~~~~~~~~~~~~~~~ 392 (404)
T Consensus 508 l~dllnTr~fFR~P~~~~A~~~s~~---lGe~EI~~~~E~ 544 (613)
T TIGR02759 508 LFDLLNTRFFFRSPSAKMAKIVSED---LGEQEIEESKEN 544 (613)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH---HCHHHHHHHHCC
T ss_conf 9977765676507888799999984---167889986137