HHsearch alignment for GI: 254781047 and conserved domain: TIGR02903
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=95.11 E-value=0.081 Score=31.60 Aligned_cols=149 Identities=21% Similarity=0.265 Sum_probs=86.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH-------------------------HHHHHHHHHC
Q ss_conf 666886499888887728999999998578111468889999999-------------------------9999999713
Q gi|254781047|r 62 KYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKD-------------------------VHSRIIMYRK 116 (404)
Q Consensus 62 ~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~-------------------------ih~~l~~~~~ 116 (404)
T Consensus 172 aSPfPQHiiLYGPPGVGKTTaARl~LEe~K~-----~~~tPF~~DA~FvEVDGtTLRWDPREvTNPLLGSVHDPIYQGa- 245 (616)
T TIGR02903 172 ASPFPQHIILYGPPGVGKTTAARLALEEAKK-----LKNTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGA- 245 (616)
T ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHHCCC-----CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-
T ss_conf 1888660785573388478999998762136-----8744761137857515762667741014776776257655676-
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCC--EEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHH
Q ss_conf 1122466557807899999961387--99984232047135888999999998549689981786867752387405668
Q gi|254781047|r 117 KIEFGEILESDPIPLVASSIALESR--VLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVL 194 (404)
Q Consensus 117 ~~~~~~~~~~dpl~~va~~l~~~~~--lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~F 194 (404)
T Consensus 246 ~RDLAE~GvPEPk----~GLVT~AHGGvLFIDEIGE---LD~lLQnKLLKVLEDKrV-~F~SsYYDpdD~--N------- 308 (616)
T TIGR02903 246 RRDLAETGVPEPK----LGLVTDAHGGVLFIDEIGE---LDPLLQNKLLKVLEDKRV-EFSSSYYDPDDE--N------- 308 (616)
T ss_pred CHHHCCCCCCCCC----CCCCCCCCCCEEEEECHHH---HHHHHHHHHHHHHCCCEE-EEEECCCCCCCC--C-------
T ss_conf 4011047879898----9871004775676502112---227876324443226436-653212487537--8-------
Q ss_pred HH-HHHHHHHCCEEEECCCCCHHHHCCCCC--------------CCEEEECCCHHHHHHH
Q ss_conf 98-999998505089804731122112367--------------8302203530226899
Q gi|254781047|r 195 VS-FIELLEKKLEIISLDSGQDYRRKEQSI--------------LPIYMTPLNSYNRVLM 239 (404)
Q Consensus 195 lP-fI~~lk~~~~V~~l~~~~DYR~~~~~~--------------~~~y~~p~~~~~~~~l 239 (404)
T Consensus 309 vPkYIK~l------Fe~GAPADFvLIGATTr~P~eINpALRSRCaEvfFePL~p~dI~~I 362 (616)
T TIGR02903 309 VPKYIKKL------FEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIKEI 362 (616)
T ss_pred CCHHHHHH------HCCCCCCCEEEECCCCCCHHHCCHHHHCCCCEEECCCCCHHHHHHH
T ss_conf 65588885------2268882568726615882440512330143132179887899999