HHsearch alignment for GI: 254781047 and conserved domain: TIGR02903

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=95.11  E-value=0.081  Score=31.60  Aligned_cols=149  Identities=21%  Similarity=0.265  Sum_probs=86.6

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH-------------------------HHHHHHHHHC
Q ss_conf             666886499888887728999999998578111468889999999-------------------------9999999713
Q gi|254781047|r   62 KYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKD-------------------------VHSRIIMYRK  116 (404)
Q Consensus        62 ~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~-------------------------ih~~l~~~~~  116 (404)
T Consensus       172 aSPfPQHiiLYGPPGVGKTTaARl~LEe~K~-----~~~tPF~~DA~FvEVDGtTLRWDPREvTNPLLGSVHDPIYQGa-  245 (616)
T TIGR02903       172 ASPFPQHIILYGPPGVGKTTAARLALEEAKK-----LKNTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGA-  245 (616)
T ss_pred             CCCCCCCEEEECCCCCCHHHHHHHHHHHCCC-----CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-
T ss_conf             1888660785573388478999998762136-----8744761137857515762667741014776776257655676-


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCC--EEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHH
Q ss_conf             1122466557807899999961387--99984232047135888999999998549689981786867752387405668
Q gi|254781047|r  117 KIEFGEILESDPIPLVASSIALESR--VLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVL  194 (404)
Q Consensus       117 ~~~~~~~~~~dpl~~va~~l~~~~~--lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~F  194 (404)
T Consensus       246 ~RDLAE~GvPEPk----~GLVT~AHGGvLFIDEIGE---LD~lLQnKLLKVLEDKrV-~F~SsYYDpdD~--N-------  308 (616)
T TIGR02903       246 RRDLAETGVPEPK----LGLVTDAHGGVLFIDEIGE---LDPLLQNKLLKVLEDKRV-EFSSSYYDPDDE--N-------  308 (616)
T ss_pred             CHHHCCCCCCCCC----CCCCCCCCCCEEEEECHHH---HHHHHHHHHHHHHCCCEE-EEEECCCCCCCC--C-------
T ss_conf             4011047879898----9871004775676502112---227876324443226436-653212487537--8-------


Q ss_pred             HH-HHHHHHHCCEEEECCCCCHHHHCCCCC--------------CCEEEECCCHHHHHHH
Q ss_conf             98-999998505089804731122112367--------------8302203530226899
Q gi|254781047|r  195 VS-FIELLEKKLEIISLDSGQDYRRKEQSI--------------LPIYMTPLNSYNRVLM  239 (404)
Q Consensus       195 lP-fI~~lk~~~~V~~l~~~~DYR~~~~~~--------------~~~y~~p~~~~~~~~l  239 (404)
T Consensus       309 vPkYIK~l------Fe~GAPADFvLIGATTr~P~eINpALRSRCaEvfFePL~p~dI~~I  362 (616)
T TIGR02903       309 VPKYIKKL------FEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIKEI  362 (616)
T ss_pred             CCHHHHHH------HCCCCCCCEEEECCCCCCHHHCCHHHHCCCCEEECCCCCHHHHHHH
T ss_conf             65588885------2268882568726615882440512330143132179887899999