HHsearch alignment for GI: 254781047 and conserved domain: TIGR03346

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.07  E-value=0.0056  Score=38.94  Aligned_cols=98  Identities=17%  Similarity=0.231  Sum_probs=44.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCHHHHHHHHHHCC-
Q ss_conf             99888887728999999998578111------4688899999999999999--71311224665578078999999613-
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALVPIEK------KCRLHFYEFMKDVHSRIIM--YRKKIEFGEILESDPIPLVASSIALE-  139 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l~~~~------K~R~HFh~FM~~ih~~l~~--~~~~~~~~~~~~~dpl~~va~~l~~~-  139 (404)
T Consensus       197 piLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i----~~LDlg~LvAGtkyRGe-------FEeRlk~ii~ev~~~~  265 (852)
T TIGR03346       197 PVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRL----LALDMGALIAGAKYRGE-------FEERLKAVLNEVTKSE  265 (852)
T ss_pred             CCEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCC----EEEEHHHHHCCCCCCHH-------HHHHHHHHHHHHHHCC
T ss_conf             721279998799999999999866999978851851----27528877521530078-------9999999999998589


Q ss_pred             -CCEEEEEEEEEC----CCHHHHHHHHHHHHHHHCC-CEEEEEC
Q ss_conf             -879998423204----7135888999999998549-6899817
Q gi|254781047|r  140 -SRVLCFDEFMIT----NIADAIILSRLFAALFSHG-CIIVMTS  177 (404)
Q Consensus       140 -~~lLCfDEF~V~----DiaDAmil~rl~~~lf~~g-v~lV~TS  177 (404)
T Consensus       266 ~~iILFIDEiHtliGaG~~~G~~DAaNlLKPaLarGelr~IgAT  309 (852)
T TIGR03346       266 GQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGAT  309 (852)
T ss_pred             CCEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf             98799961255532688766641067774378747985599827