HHsearch alignment for GI: 254781047 and conserved domain: TIGR03346
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.07 E-value=0.0056 Score=38.94 Aligned_cols=98 Identities=17% Similarity=0.231 Sum_probs=44.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCHHHHHHHHHHCC-
Q ss_conf 99888887728999999998578111------4688899999999999999--71311224665578078999999613-
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIEK------KCRLHFYEFMKDVHSRIIM--YRKKIEFGEILESDPIPLVASSIALE- 139 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~~------K~R~HFh~FM~~ih~~l~~--~~~~~~~~~~~~~dpl~~va~~l~~~- 139 (404)
T Consensus 197 piLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i----~~LDlg~LvAGtkyRGe-------FEeRlk~ii~ev~~~~ 265 (852)
T TIGR03346 197 PVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRL----LALDMGALIAGAKYRGE-------FEERLKAVLNEVTKSE 265 (852)
T ss_pred CCEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCC----EEEEHHHHHCCCCCCHH-------HHHHHHHHHHHHHHCC
T ss_conf 721279998799999999999866999978851851----27528877521530078-------9999999999998589
Q ss_pred -CCEEEEEEEEEC----CCHHHHHHHHHHHHHHHCC-CEEEEEC
Q ss_conf -879998423204----7135888999999998549-6899817
Q gi|254781047|r 140 -SRVLCFDEFMIT----NIADAIILSRLFAALFSHG-CIIVMTS 177 (404)
Q Consensus 140 -~~lLCfDEF~V~----DiaDAmil~rl~~~lf~~g-v~lV~TS 177 (404)
T Consensus 266 ~~iILFIDEiHtliGaG~~~G~~DAaNlLKPaLarGelr~IgAT 309 (852)
T TIGR03346 266 GQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGAT 309 (852)
T ss_pred CCEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 98799961255532688766641067774378747985599827