HHsearch alignment for GI: 254781047 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.31 E-value=0.32 Score=27.77 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=51.4
Q ss_pred HHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 999998537889981898787246389998999999982289828998078978801346765313489989887452
Q gi|254781047|r 291 DFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLYEM 368 (404)
Q Consensus 291 DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~EM 368 (404)
T Consensus 83 ~~l~~l~~~d~l~iDDi~~i~~~~-~~e~~lF~l~N~~~~~~~~ilits~~~p~~l~--------~~l~dL~SRl~~~ 151 (226)
T TIGR03420 83 EVLEGLEQADLVCLDDVEAIAGQP-EWQEALFHLYNRVREAGGRLLIAGRAAPAQLP--------LRLPDLRTRLAWG 151 (226)
T ss_pred HHHHHCCCCCEEEEECHHHHCCCH-HHHHHHHHHHHHHHHHCCEEEEECCCCHHHCC--------CCHHHHHHHHHCC
T ss_conf 999727448999996633343783-78999999999998652828986788823203--------2017799999688