HHsearch alignment for GI: 254781047 and conserved domain: cd00009
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.63 E-value=3.2e-07 Score=65.88 Aligned_cols=108 Identities=15% Similarity=0.056 Sum_probs=64.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE
Q ss_conf 886499888887728999999998578111--468889999999999999971311224665578078999999613879
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEK--KCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRV 142 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~--K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~l 142 (404)
T Consensus 18 ~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~v 87 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF----------LVRLLFELAEKAKPGV 87 (151)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHHHH----------HHHHHHHHHHHCCCCE
T ss_conf 998089989999886599999999712137982785477704677775760577----------8898999999769986
Q ss_pred EEEEEEEECCCHHHHHHHHHHHHHHH-----CCCEEEEECCCCHH
Q ss_conf 99842320471358889999999985-----49689981786867
Q gi|254781047|r 143 LCFDEFMITNIADAIILSRLFAALFS-----HGCIIVMTSNFIPE 182 (404)
Q Consensus 143 LCfDEF~V~DiaDAmil~rl~~~lf~-----~gv~lV~TSN~~P~ 182 (404)
T Consensus 88 l~iDEi~~l~~~~~~~~~~~l~~~~~~~~~~~~~~vI~~tn~~~~ 132 (151)
T cd00009 88 LFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL 132 (151)
T ss_pred EEEECHHHCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCC
T ss_conf 982016655999999999999871575406788899995289988