HHsearch alignment for GI: 254781047 and conserved domain: cd03220
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.45 E-value=0.2 Score=29.16 Aligned_cols=112 Identities=22% Similarity=0.251 Sum_probs=56.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHH-----------------------HHHHHH--------HHHHHHHHH
Q ss_conf 6499888887728999999998578111468889-----------------------999999--------999999971
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHF-----------------------YEFMKD--------VHSRIIMYR 115 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HF-----------------------h~FM~~--------ih~~l~~~~ 115 (404)
T Consensus 49 eivgilG~NGaGKSTLl~~i~Gl~~p~~-G~I~i~G~~~~~~~~~~~~~p~ltv~enl~~~~~~~g~~~~~~~~~~~~~l 127 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGIYPPDS-GTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEII 127 (224)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCC-CEEEECCEECCCCCCCEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 8999997999819999999975877787-769999898430157420399882999999999982965899999999999
Q ss_pred CCCCCCC---------CCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 3112246---------65578078999999613879998423-2047135888999999998549689981786
Q gi|254781047|r 116 KKIEFGE---------ILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNF 179 (404)
Q Consensus 116 ~~~~~~~---------~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~ 179 (404)
T Consensus 128 ~~~~L~~~~~~~~~~LSgG~kqRl~iA~al~~~P~illLDEPt~gLD~~~~~~i~~~i~~l~~~g~tiii~sH~ 201 (224)
T cd03220 128 EFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHD 201 (224)
T ss_pred HHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 86367556538665469999999999999966999999918866569999999999999998589999998898