HHsearch alignment for GI: 254781047 and conserved domain: cd03221
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.01 E-value=0.075 Score=31.79 Aligned_cols=100 Identities=16% Similarity=0.126 Sum_probs=61.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf 86499888887728999999998578111468889999999999999971311224665578078999999613879998
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCF 145 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCf 145 (404)
T Consensus 26 ge~~~l~G~NGsGKTTl~~~l~G~~~~~~-G~i~~~~--~~~i~y~~QL----S----gGqkqr~~la~al~~~p~iliL 94 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDE-GIVTWGS--TVKIGYFEQL----S----GGEKMRLALAKLLLENPNLLLL 94 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCC-EEEEECC--CCEEEEEHHC----C----HHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99999998999849999999848988985-0999999--6089987007----9----9999999999997259989999
Q ss_pred EEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 423-204713588899999999854968998178
Q gi|254781047|r 146 DEF-MITNIADAIILSRLFAALFSHGCIIVMTSN 178 (404)
Q Consensus 146 DEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN 178 (404)
T Consensus 95 DEPt~~LD~~~~~~i~~~l~~~--~~tii~vsHd 126 (144)
T cd03221 95 DEPTNHLDLESIEALEEALKEY--PGTVILVSHD 126 (144)
T ss_pred ECCCCCCCHHHHHHHHHHHHHC--CCEEEEEECC
T ss_conf 5775558999999999999970--9999999679