HHsearch alignment for GI: 254781047 and conserved domain: cd03246
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.18 E-value=0.019 Score=35.63 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=64.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCH-H--------HHHHHHHHHH---HHHHHHHHHHCCCCCC-CCCCCCHHHHH
Q ss_conf 86499888887728999999998578111-4--------6888999999---9999999971311224-66557807899
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEK-K--------CRLHFYEFMK---DVHSRIIMYRKKIEFG-EILESDPIPLV 132 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~-K--------~R~HFh~FM~---~ih~~l~~~~~~~~~~-~~~~~dpl~~v 132 (404)
T Consensus 28 G~~vaIvG~sGsGKSTLl~ll~gl~~p~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~eNiLSGGQkQRval 107 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGL 107 (173)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCEECCCCHHHHCCCHHHHHHHHH
T ss_conf 99999999999809999999966666799989999999332899898420899908883677758997676999999999
Q ss_pred HHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 9999613879998423-20471358889999999985496899817868
Q gi|254781047|r 133 ASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFI 180 (404)
Q Consensus 133 a~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~ 180 (404)
T Consensus 108 ARal~~~p~ililDEpts~LD~~~e~~i~~~l~~l~~~~~Tvi~vtH~~ 156 (173)
T cd03246 108 ARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156 (173)
T ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf 9998279999999687668998999999999997864898999984799