HHsearch alignment for GI: 254781047 and conserved domain: cd03247
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.30 E-value=0.054 Score=32.69 Aligned_cols=108 Identities=19% Similarity=0.190 Sum_probs=51.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHHHHHHH-----------HHCCCCCCCCCCCCHHHH
Q ss_conf 4998888877289999999985781114688899-----999999999999-----------713112246655780789
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY-----EFMKDVHSRIIM-----------YRKKIEFGEILESDPIPL 131 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh-----~FM~~ih~~l~~-----------~~~~~~~~~~~~~dpl~~ 131 (404)
T Consensus 30 ~~aivG~sGsGKSTLl~~l~G~~~p~~-G~i~i~g~~i~~~~~~~~~~i~~v~Q~~~lf~~ti~~nlg~~LSgGqkqRv~ 108 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKPQQ-GEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLA 108 (178)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCC-CEEEECCEEHHHHHHHHHHHEEEECCCCCCCCCHHHHHCCCCCCHHHHHHHH
T ss_conf 999999998759999999986176678-8699999988997899997208983556364541998628888999999999
Q ss_pred HHHHHHCCCCEEEEEEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 9999961387999842320-47135888999999998549689981
Q gi|254781047|r 132 VASSIALESRVLCFDEFMI-TNIADAIILSRLFAALFSHGCIIVMT 176 (404)
Q Consensus 132 va~~l~~~~~lLCfDEF~V-~DiaDAmil~rl~~~lf~~gv~lV~T 176 (404)
T Consensus 109 iAral~~~p~ililDEpts~LD~~t~~~i~~~l~~~~~~~Tvi~it 154 (178)
T cd03247 109 LARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWIT 154 (178)
T ss_pred HHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9999964979767228655699899999999999983999999980