>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=95.02  E-value=0.13  Score=30.23  Aligned_cols=27  Identities=33%  Similarity=0.450  Sum_probs=21.6

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             864998888877289999999985781
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
T Consensus        28 Ge~i~IvG~sGsGKSTLl~ll~gl~~p   54 (234)
T cd03251          28 GETVALVGPSGSGKSTLVNLIPRFYDV   54 (234)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf             999999989998299999999667667