HHsearch alignment for GI: 254781047 and conserved domain: cd03301
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.35 E-value=0.17 Score=29.49 Aligned_cols=117 Identities=16% Similarity=0.250 Sum_probs=60.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC----------------HHHHH--HHHHHH--------------H--------HH
Q ss_conf 49988888772899999999857811----------------14688--899999--------------9--------99
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIE----------------KKCRL--HFYEFM--------------K--------DV 107 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~----------------~K~R~--HFh~FM--------------~--------~i 107 (404)
T Consensus 28 ~~~i~GpSG~GKSTlLr~iaGl~~p~~G~I~~~g~~i~~~~~~~R~ig~VfQ~~~LfP~ltV~eNI~~~l~~~~~~~~e~ 107 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEI 107 (213)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHH
T ss_conf 99999999880999999997699998639999999999999767887899458764654709999998999859998999
Q ss_pred HHHHHHHHCCCCCCCCCCCCHH---------HHHHHHHHCCCCEEEEEE-EEECCCHHHHHHHHHHHHHHHC-CCEEEEE
Q ss_conf 9999997131122466557807---------899999961387999842-3204713588899999999854-9689981
Q gi|254781047|r 108 HSRIIMYRKKIEFGEILESDPI---------PLVASSIALESRVLCFDE-FMITNIADAIILSRLFAALFSH-GCIIVMT 176 (404)
Q Consensus 108 h~~l~~~~~~~~~~~~~~~dpl---------~~va~~l~~~~~lLCfDE-F~V~DiaDAmil~rl~~~lf~~-gv~lV~T 176 (404)
T Consensus 108 ~~~v~~~l~~~gl~~~~~~~P~~LSGGqkQRVaiARAl~~~P~lLLlDEP~saLD~~~r~~i~~~l~~~~~~~~~T~i~v 187 (213)
T cd03301 108 DERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYV 187 (213)
T ss_pred HHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 99999999875992465099556999999999999998759998998388764298999999999999999749989999
Q ss_pred CCCCHHHH
Q ss_conf 78686775
Q gi|254781047|r 177 SNFIPENL 184 (404)
Q Consensus 177 SN~~P~dL 184 (404)
T Consensus 188 THd~~ea~ 195 (213)
T cd03301 188 THDQVEAM 195 (213)
T ss_pred CCCHHHHH
T ss_conf 99989999