HHsearch alignment for GI: 254781047 and conserved domain: cd03301

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.35  E-value=0.17  Score=29.49  Aligned_cols=117  Identities=16%  Similarity=0.250  Sum_probs=60.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCC----------------HHHHH--HHHHHH--------------H--------HH
Q ss_conf             49988888772899999999857811----------------14688--899999--------------9--------99
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIE----------------KKCRL--HFYEFM--------------K--------DV  107 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~----------------~K~R~--HFh~FM--------------~--------~i  107 (404)
T Consensus        28 ~~~i~GpSG~GKSTlLr~iaGl~~p~~G~I~~~g~~i~~~~~~~R~ig~VfQ~~~LfP~ltV~eNI~~~l~~~~~~~~e~  107 (213)
T cd03301          28 FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEI  107 (213)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHH
T ss_conf             99999999880999999997699998639999999999999767887899458764654709999998999859998999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCHH---------HHHHHHHHCCCCEEEEEE-EEECCCHHHHHHHHHHHHHHHC-CCEEEEE
Q ss_conf             9999997131122466557807---------899999961387999842-3204713588899999999854-9689981
Q gi|254781047|r  108 HSRIIMYRKKIEFGEILESDPI---------PLVASSIALESRVLCFDE-FMITNIADAIILSRLFAALFSH-GCIIVMT  176 (404)
Q Consensus       108 h~~l~~~~~~~~~~~~~~~dpl---------~~va~~l~~~~~lLCfDE-F~V~DiaDAmil~rl~~~lf~~-gv~lV~T  176 (404)
T Consensus       108 ~~~v~~~l~~~gl~~~~~~~P~~LSGGqkQRVaiARAl~~~P~lLLlDEP~saLD~~~r~~i~~~l~~~~~~~~~T~i~v  187 (213)
T cd03301         108 DERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYV  187 (213)
T ss_pred             HHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf             99999999875992465099556999999999999998759998998388764298999999999999999749989999


Q ss_pred             CCCCHHHH
Q ss_conf             78686775
Q gi|254781047|r  177 SNFIPENL  184 (404)
Q Consensus       177 SN~~P~dL  184 (404)
T Consensus       188 THd~~ea~  195 (213)
T cd03301         188 THDQVEAM  195 (213)
T ss_pred             CCCHHHHH
T ss_conf             99989999