Query         gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 404
No_of_seqs    139 out of 1090
Neff          6.0 
Searched_HMMs 39220
Date          Mon May 30 03:42:13 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781047.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 pfam03969 AFG1_ATPase AFG1-lik 100.0       0       0  914.4  38.9  358    5-376     2-360 (361)
  2 COG1485 Predicted ATPase [Gene 100.0       0       0  870.9  35.3  361    2-379     7-367 (367)
  3 KOG2383 consensus              100.0       0       0  823.2  31.3  377    2-378    32-464 (467)
  4 PRK08939 primosomal protein Dn  99.5   2E-12 5.1E-17   99.0  16.5  139   64-217   155-304 (306)
  5 PRK08116 hypothetical protein;  99.5 2.7E-12 6.9E-17   98.1  13.4  139   65-220   107-249 (262)
  6 PRK00149 dnaA chromosomal repl  99.2 2.9E-10 7.4E-15   85.2  10.3  104   67-184   146-255 (447)
  7 COG1484 DnaC DNA replication p  99.1 3.1E-09 7.8E-14   78.7  14.3  142   65-222   104-250 (254)
  8 PRK12422 chromosomal replicati  99.1 9.5E-10 2.4E-14   82.0  11.7  103   67-184   142-249 (455)
  9 PRK06526 transposase; Provisio  99.0 1.6E-08 4.1E-13   74.1  14.5  143   65-222    97-242 (254)
 10 PRK09183 transposase/IS protei  99.0 3.8E-09 9.6E-14   78.1  10.4  148   65-225   100-250 (258)
 11 COG0593 DnaA ATPase involved i  99.0 2.5E-09 6.4E-14   79.3   9.3  126   66-216   113-247 (408)
 12 PRK08181 transposase; Validate  99.0 9.3E-09 2.4E-13   75.7  10.3  142   65-220   105-248 (269)
 13 pfam00308 Bac_DnaA Bacterial d  99.0 4.6E-09 1.2E-13   77.6   8.8  104   67-184    35-144 (219)
 14 PRK07952 DNA replication prote  98.9 5.6E-08 1.4E-12   70.7  13.8  136   65-220    95-237 (242)
 15 PRK05642 DNA replication initi  98.9 4.6E-09 1.2E-13   77.6   8.2   97   67-184    46-144 (234)
 16 PRK08084 DNA replication initi  98.9 5.7E-09 1.4E-13   77.0   8.2   90   68-184    47-145 (235)
 17 TIGR03420 DnaA_homol_Hda DnaA   98.9 1.1E-08 2.8E-13   75.2   9.6   94   67-184    39-137 (226)
 18 PRK06835 DNA replication prote  98.9   3E-08 7.7E-13   72.4  10.3  136   64-220   181-323 (330)
 19 pfam01695 IstB IstB-like ATP b  98.8 7.8E-08   2E-12   69.8  11.0  126   66-207    47-177 (178)
 20 PRK08903 hypothetical protein;  98.8 1.6E-08   4E-13   74.2   7.2   92   68-184    44-136 (227)
 21 PRK12377 putative replication   98.8 5.8E-07 1.5E-11   64.2  14.4  139   65-220   100-241 (248)
 22 PRK08727 hypothetical protein;  98.7 1.2E-07 3.1E-12   68.6   9.3   97   67-184    42-140 (233)
 23 PRK06921 hypothetical protein;  98.7 2.3E-07 5.8E-12   66.8  10.7  130   65-217   115-256 (265)
 24 PRK06893 DNA replication initi  98.7 4.3E-08 1.1E-12   71.4   6.6  123   66-216    39-164 (229)
 25 PRK03992 proteasome-activating  98.7 1.6E-07   4E-12   67.9   9.1  106   64-184   164-284 (390)
 26 CHL00195 ycf46 Ycf46; Provisio  98.7 7.6E-08 1.9E-12   69.9   7.4  104   63-180   256-370 (491)
 27 cd00009 AAA The AAA+ (ATPases   98.6 3.2E-07 8.2E-12   65.9   9.3  108   65-182    18-132 (151)
 28 PRK09087 hypothetical protein;  98.4 3.5E-06 8.9E-11   59.3   8.9   88   66-184    44-131 (226)
 29 PRK06620 hypothetical protein;  98.4 3.3E-06 8.5E-11   59.4   8.7   84   66-184    44-127 (214)
 30 KOG0733 consensus               98.3 1.4E-05 3.6E-10   55.4  10.2  140   64-220   221-389 (802)
 31 pfam07728 AAA_5 AAA domain (dy  98.2 2.6E-06 6.7E-11   60.1   5.1   91   68-167     1-91  (139)
 32 CHL00176 ftsH cell division pr  98.1 6.2E-05 1.6E-09   51.4  11.2  141   64-218   208-373 (631)
 33 KOG0727 consensus               98.1 4.8E-05 1.2E-09   52.1   9.6  112   64-192   187-320 (408)
 34 COG1222 RPT1 ATP-dependent 26S  98.0 0.00016 4.1E-09   48.8  10.9  140   64-219   183-349 (406)
 35 pfam00004 AAA ATPase family as  98.0   1E-05 2.6E-10   56.3   4.4  101   69-185     1-115 (131)
 36 PRK04195 replication factor C   97.9 0.00013 3.3E-09   49.4   9.1  115   66-214    40-162 (403)
 37 KOG0730 consensus               97.9 7.3E-05 1.9E-09   50.9   7.7  139   62-216   214-375 (693)
 38 PRK10733 hflB ATP-dependent me  97.9 0.00013 3.4E-09   49.3   8.8  141   64-218   183-348 (644)
 39 COG0464 SpoVK ATPases of the A  97.8 3.6E-05 9.1E-10   52.9   5.5  106   63-182   273-390 (494)
 40 PRK00411 cdc6 cell division co  97.8 0.00013 3.3E-09   49.3   7.8  113   65-180    54-183 (394)
 41 KOG0730 consensus               97.7 0.00011 2.9E-09   49.7   6.6   99   63-181   465-581 (693)
 42 pfam07726 AAA_3 ATPase family   97.7   1E-05 2.6E-10   56.4   1.0   92   69-178     2-111 (131)
 43 PRK11034 clpA ATP-dependent Cl  97.7  0.0019 4.7E-08   42.0  12.1  126   67-212   208-348 (758)
 44 KOG0735 consensus               97.7 0.00068 1.7E-08   44.8   9.8   27   65-91    700-726 (952)
 45 KOG0733 consensus               97.6 4.4E-05 1.1E-09   52.3   3.2  139   64-217   543-706 (802)
 46 KOG0651 consensus               97.6 0.00089 2.3E-08   44.0   9.8  124   63-211   163-315 (388)
 47 COG0714 MoxR-like ATPases [Gen  97.6 7.2E-05 1.8E-09   51.0   3.9  102   67-178    44-162 (329)
 48 smart00382 AAA ATPases associa  97.6 0.00025 6.3E-09   47.6   6.4  113   66-179     2-125 (148)
 49 KOG0736 consensus               97.6  0.0018 4.6E-08   42.1  10.7  184   68-328   707-906 (953)
 50 TIGR01242 26Sp45 26S proteasom  97.5 5.4E-05 1.4E-09   51.8   2.6  138   64-218   154-319 (364)
 51 COG1223 Predicted ATPase (AAA+  97.5  0.0011 2.9E-08   43.4   9.0  122   65-216   150-308 (368)
 52 PRK10865 protein disaggregatio  97.4  0.0019 4.8E-08   42.0   9.6  126   67-212   200-340 (857)
 53 PRK12402 replication factor C   97.4  0.0011 2.9E-08   43.4   7.6  119   69-213    39-184 (337)
 54 pfam00910 RNA_helicase RNA hel  97.3 0.00025 6.3E-09   47.6   4.0   85   69-179     1-105 (105)
 55 PRK13342 recombination factor   97.3 0.00041   1E-08   46.2   4.8  108   67-212    38-150 (417)
 56 KOG0732 consensus               97.3 0.00047 1.2E-08   45.8   5.1  112   62-182   295-418 (1080)
 57 KOG0734 consensus               97.3  0.0087 2.2E-07   37.7  11.2  159   27-218   311-497 (752)
 58 PRK00440 rfc replication facto  97.2   0.001 2.6E-08   43.7   6.2  115   69-214    40-161 (318)
 59 KOG0742 consensus               97.2  0.0062 1.6E-07   38.7  10.2   94   62-182   380-497 (630)
 60 KOG0744 consensus               97.2 0.00031 7.9E-09   46.9   3.3  148   30-181   135-308 (423)
 61 TIGR01241 FtsH_fam ATP-depende  97.2 0.00017 4.4E-09   48.6   1.9  171   65-257    91-311 (505)
 62 TIGR02639 ClpA ATP-dependent C  97.2  0.0025 6.4E-08   41.2   7.6  107   61-183   521-650 (774)
 63 PRK06921 hypothetical protein;  97.1  0.0044 1.1E-07   39.7   8.4   74  289-370   167-244 (265)
 64 TIGR03345 VI_ClpV1 type VI sec  97.1   0.012   3E-07   36.9  10.5   21   69-89    211-231 (852)
 65 COG0542 clpA ATP-binding subun  97.1  0.0093 2.4E-07   37.6  10.0  114   62-187   516-651 (786)
 66 KOG1051 consensus               97.1   0.016   4E-07   36.1  11.0  119   64-189   589-720 (898)
 67 TIGR03346 chaperone_ClpB ATP-d  97.1  0.0056 1.4E-07   38.9   8.7   98   69-177   197-309 (852)
 68 CHL00095 clpC Clp protease ATP  97.0  0.0055 1.4E-07   39.0   8.1   99   67-176   201-313 (823)
 69 pfam07724 AAA_2 AAA domain (Cd  96.9  0.0022 5.7E-08   41.5   5.4  109   68-184     5-130 (168)
 70 KOG0737 consensus               96.9 0.00075 1.9E-08   44.5   2.7   25   65-89    126-150 (386)
 71 PRK08116 hypothetical protein;  96.9   0.013 3.4E-07   36.6   9.1   79  288-375   162-241 (262)
 72 pfam01637 Arch_ATPase Archaeal  96.8   0.044 1.1E-06   33.3  14.2   25   68-92     22-46  (223)
 73 KOG0729 consensus               96.8  0.0057 1.4E-07   38.9   6.6   26   64-89    209-234 (435)
 74 PRK13341 recombination factor   96.7  0.0031 7.8E-08   40.6   5.0  110   66-212    52-167 (726)
 75 KOG0652 consensus               96.7  0.0023 5.8E-08   41.4   4.3  162    3-191   146-335 (424)
 76 TIGR01448 recD_rel helicase, R  96.7    0.01 2.6E-07   37.3   7.6  161    4-220   334-525 (769)
 77 pfam00158 Sigma54_activat Sigm  96.7   0.015 3.8E-07   36.2   8.4  118   68-193    24-157 (168)
 78 COG0470 HolB ATPase involved i  96.7  0.0025 6.4E-08   41.2   4.2  131   67-212    25-167 (325)
 79 pfam05496 RuvB_N Holliday junc  96.6  0.0065 1.6E-07   38.6   6.0   24   68-91     52-75  (234)
 80 PRK11331 5-methylcytosine-spec  96.6   0.016 4.2E-07   36.0   8.1  139   65-213   193-358 (459)
 81 pfam03969 AFG1_ATPase AFG1-lik  96.6   0.012 3.1E-07   36.8   7.1   76  294-374   122-204 (361)
 82 pfam00931 NB-ARC NB-ARC domain  96.5   0.034 8.7E-07   34.0   9.3  105   66-178    19-136 (285)
 83 cd03291 ABCC_CFTR1 The CFTR su  96.5   0.013 3.3E-07   36.7   7.0   28   65-92     62-89  (282)
 84 pfam05673 DUF815 Protein of un  96.5  0.0044 1.1E-07   39.6   4.6   94   65-180    52-152 (248)
 85 PRK11174 cysteine/glutathione   96.4   0.025 6.4E-07   34.8   7.8   18  320-337   492-509 (588)
 86 cd00267 ABC_ATPase ABC (ATP-bi  96.4   0.025 6.3E-07   34.8   7.7  112   67-184    26-144 (157)
 87 COG0465 HflB ATP-dependent Zn   96.3  0.0055 1.4E-07   39.0   4.3  134   64-218   181-346 (596)
 88 PRK13539 cytochrome c biogenes  96.3   0.051 1.3E-06   32.9   8.9   26   67-92     29-54  (206)
 89 TIGR00362 DnaA chromosomal rep  96.3    0.02 5.1E-07   35.4   6.8  135   65-213   180-334 (493)
 90 COG2607 Predicted ATPase (AAA+  96.2   0.007 1.8E-07   38.3   4.3   95   65-180    84-184 (287)
 91 COG1474 CDC6 Cdc6-related prot  96.2   0.018 4.5E-07   35.8   6.2  113   68-181    44-167 (366)
 92 cd03244 ABCC_MRP_domain2 Domai  96.1    0.04   1E-06   33.6   7.7   25   68-92     32-56  (221)
 93 TIGR00635 ruvB Holliday juncti  96.1   0.021 5.4E-07   35.3   6.2  181   24-288     8-217 (305)
 94 smart00487 DEXDc DEAD-like hel  96.0    0.13 3.4E-06   30.2  11.1   38   16-83      4-41  (201)
 95 TIGR01243 CDC48 AAA family ATP  96.0   0.005 1.3E-07   39.3   2.7  138   63-219   572-738 (980)
 96 TIGR01243 CDC48 AAA family ATP  96.0  0.0065 1.7E-07   38.5   3.2  123   41-186   223-357 (980)
 97 PRK10790 putative multidrug tr  96.0    0.14 3.5E-06   30.2  10.0   15  232-246   376-390 (593)
 98 PHA02244 ATPase-like protein    95.9   0.073 1.8E-06   31.9   8.2   86   66-166   119-204 (383)
 99 KOG0728 consensus               95.9   0.023 5.8E-07   35.1   5.6  139   64-218   179-344 (404)
100 PRK11614 livF leucine/isoleuci  95.9    0.16 4.1E-06   29.7  11.0   24   68-91     33-56  (237)
101 cd03245 ABCC_bacteriocin_expor  95.8   0.048 1.2E-06   33.0   7.0   26   66-91     30-55  (220)
102 PRK11176 lipid transporter ATP  95.8    0.11 2.7E-06   30.8   8.7   19  319-337   485-503 (581)
103 cd03227 ABC_Class2 ABC-type Cl  95.7   0.013 3.3E-07   36.7   3.9  108   67-181    22-142 (162)
104 COG2256 MGS1 ATPase related to  95.7   0.011 2.8E-07   37.1   3.4  113   66-212    48-162 (436)
105 PRK05642 DNA replication initi  95.7   0.076 1.9E-06   31.8   7.6   70  292-370    91-160 (234)
106 PRK00149 dnaA chromosomal repl  95.7    0.08   2E-06   31.6   7.7   81  286-375   196-281 (447)
107 cd03231 ABC_CcmA_heme_exporter  95.7    0.13 3.3E-06   30.3   8.8   27   66-92     26-52  (201)
108 cd03232 ABC_PDR_domain2 The pl  95.6   0.081 2.1E-06   31.6   7.7  112   68-184    35-172 (192)
109 KOG2028 consensus               95.6   0.016   4E-07   36.1   4.0  117   64-211   160-279 (554)
110 cd03248 ABCC_TAP TAP, the Tran  95.6   0.056 1.4E-06   32.6   6.8   26   67-92     41-66  (226)
111 PRK13546 teichoic acids export  95.6     0.2   5E-06   29.1  10.3  114   68-181    52-204 (264)
112 KOG0726 consensus               95.6    0.01 2.6E-07   37.3   3.0   71   64-149   217-288 (440)
113 PRK10923 glnG nitrogen regulat  95.6   0.062 1.6E-06   32.4   6.9  126   64-195   159-298 (469)
114 PRK13540 cytochrome c biogenes  95.6    0.21 5.3E-06   29.0   9.9   27   67-93     28-54  (200)
115 cd03289 ABCC_CFTR2 The CFTR su  95.5   0.074 1.9E-06   31.8   7.2   52  128-180   145-197 (275)
116 cd03220 ABC_KpsT_Wzt ABC_KpsT_  95.5     0.2   5E-06   29.2   9.1  112   67-179    49-201 (224)
117 PRK10787 DNA-binding ATP-depen  95.4   0.036 9.1E-07   33.9   5.2  129   67-218   350-498 (784)
118 PRK13541 cytochrome c biogenes  95.4   0.031 7.8E-07   34.3   4.9   53  129-181   131-184 (195)
119 cd03249 ABC_MTABC3_MDL1_MDL2 M  95.4   0.061 1.6E-06   32.4   6.4   26   66-91     29-54  (238)
120 PRK11608 pspF phage shock prot  95.4   0.023 5.9E-07   35.1   4.2  122   67-196    30-167 (325)
121 PRK11388 DNA-binding transcrip  95.4   0.042 1.1E-06   33.4   5.5   26   66-91    348-373 (639)
122 KOG0741 consensus               95.4   0.009 2.3E-07   37.7   2.0   22   64-85    254-275 (744)
123 PRK07270 DNA polymerase III su  95.4   0.071 1.8E-06   32.0   6.6  123   69-211    39-175 (557)
124 cd03253 ABCC_ATM1_transporter   95.4   0.058 1.5E-06   32.5   6.1   25   67-91     28-52  (236)
125 cd03301 ABC_MalK_N The N-termi  95.4    0.17 4.4E-06   29.5   8.5  117   68-184    28-195 (213)
126 PRK10820 DNA-binding transcrip  95.3   0.073 1.9E-06   31.9   6.6  115   65-194   226-356 (513)
127 cd03247 ABCC_cytochrome_bd The  95.3   0.054 1.4E-06   32.7   5.8  108   68-176    30-154 (178)
128 cd03252 ABCC_Hemolysin The ABC  95.3   0.071 1.8E-06   31.9   6.4   25   67-91     29-53  (237)
129 PRK13657 cyclic beta-1,2-gluca  95.3   0.087 2.2E-06   31.4   6.8   45  289-337   450-495 (585)
130 pfam05621 TniB Bacterial TniB   95.3    0.26 6.6E-06   28.4  11.1  139   65-218    60-221 (302)
131 cd03214 ABC_Iron-Siderophores_  95.2    0.23 5.9E-06   28.7   8.9  111   67-181    26-159 (180)
132 cd03254 ABCC_Glucan_exporter_l  95.2    0.11 2.8E-06   30.8   7.2   27   66-92     29-55  (229)
133 cd03236 ABC_RNaseL_inhibitor_d  95.2    0.24 6.2E-06   28.6   8.9   48  131-178   149-197 (255)
134 COG2255 RuvB Holliday junction  95.2    0.12   3E-06   30.5   7.3   74   64-159    50-123 (332)
135 cd03246 ABCC_Protease_Secretio  95.2   0.019 4.8E-07   35.6   3.1  115   66-180    28-156 (173)
136 KOG2004 consensus               95.2    0.28 7.1E-06   28.2  10.1  122   65-213   437-583 (906)
137 PRK10789 putative multidrug tr  95.1   0.095 2.4E-06   31.2   6.6   20  318-337   456-475 (569)
138 TIGR02903 spore_lon_C ATP-depe  95.1   0.081 2.1E-06   31.6   6.2  149   62-239   172-362 (616)
139 PRK00080 ruvB Holliday junctio  95.1    0.12   3E-06   30.6   7.0  108   23-175    28-135 (328)
140 PRK05022 anaerobic nitric oxid  95.1   0.088 2.2E-06   31.4   6.3  120   64-194   207-345 (510)
141 PRK06835 DNA replication prote  95.1    0.26 6.7E-06   28.4   8.7   89  274-370   214-310 (330)
142 TIGR03015 pepcterm_ATPase puta  95.0   0.083 2.1E-06   31.5   6.1   95   69-168    46-152 (269)
143 cd03269 ABC_putative_ATPase Th  95.0    0.28 7.1E-06   28.2   8.8   51  131-181   138-189 (210)
144 cd03251 ABCC_MsbA MsbA is an e  95.0    0.13 3.4E-06   30.2   7.1   27   66-92     28-54  (234)
145 cd03221 ABCF_EF-3 ABCF_EF-3  E  95.0   0.075 1.9E-06   31.8   5.8  100   66-178    26-126 (144)
146 COG1373 Predicted ATPase (AAA+  95.0   0.076 1.9E-06   31.8   5.8   93   68-181    39-133 (398)
147 PRK07952 DNA replication prote  95.0    0.28 7.1E-06   28.2   8.6   75  286-368   147-221 (242)
148 PRK12422 chromosomal replicati  94.9    0.12   3E-06   30.6   6.7   80  287-375   191-275 (455)
149 cd03228 ABCC_MRP_Like The MRP   94.9   0.034 8.6E-07   34.0   3.7  108   67-178    29-154 (171)
150 KOG0739 consensus               94.9   0.038 9.7E-07   33.7   4.0   28   63-90    163-190 (439)
151 cd03238 ABC_UvrA The excision   94.8    0.19 4.7E-06   29.3   7.5  111   68-179    23-148 (176)
152 KOG0731 consensus               94.8   0.022 5.7E-07   35.2   2.7  141   64-218   342-509 (774)
153 KOG0738 consensus               94.8   0.026 6.5E-07   34.8   3.0   27   65-91    244-270 (491)
154 cd01124 KaiC KaiC is a circadi  94.8   0.061 1.6E-06   32.4   5.0   23   69-91      2-25  (187)
155 PRK08084 DNA replication initi  94.8    0.19 4.9E-06   29.2   7.5   69  290-367    89-158 (235)
156 cd03250 ABCC_MRP_domain1 Domai  94.6    0.27   7E-06   28.2   7.9   27   66-92     31-57  (204)
157 cd03233 ABC_PDR_domain1 The pl  94.6   0.096 2.4E-06   31.1   5.5  118   66-185    33-184 (202)
158 cd03299 ABC_ModC_like Archeal   94.6    0.33 8.5E-06   27.7   8.2   24   68-91     27-50  (235)
159 PRK11248 tauB taurine transpor  94.5    0.42 1.1E-05   27.1   8.8   25   68-92     29-53  (255)
160 cd03216 ABC_Carb_Monos_I This   94.5    0.21 5.3E-06   29.0   6.9  113   66-181    26-143 (163)
161 cd03224 ABC_TM1139_LivF_branch  94.4    0.43 1.1E-05   27.0  10.8   25   68-92     28-52  (222)
162 PRK06674 DNA polymerase III su  94.4   0.056 1.4E-06   32.6   4.0  163    1-211     1-176 (563)
163 PRK13638 cbiO cobalt transport  94.4    0.17 4.2E-06   29.6   6.3   51  130-180   145-196 (271)
164 PRK13549 xylose transporter AT  94.4    0.44 1.1E-05   26.9   8.9   54  129-182   151-205 (513)
165 PRK11361 acetoacetate metaboli  94.4    0.15 3.9E-06   29.8   6.1  122   65-194   165-302 (457)
166 TIGR03420 DnaA_homol_Hda DnaA   94.3    0.32 8.3E-06   27.8   7.7   69  291-368    83-151 (226)
167 cd03288 ABCC_SUR2 The SUR doma  94.3    0.26 6.7E-06   28.3   7.2   27   66-92     47-73  (257)
168 cd03217 ABC_FeS_Assembly ABC-t  94.3    0.22 5.5E-06   28.9   6.8  107   68-178    28-162 (200)
169 PRK13531 regulatory ATPase Rav  94.3   0.013 3.3E-07   36.6   0.5  126   67-217    40-187 (498)
170 COG1121 ZnuC ABC-type Mn/Zn tr  94.3    0.14 3.7E-06   30.0   5.8   68  129-214   147-216 (254)
171 PRK06647 DNA polymerase III su  94.3    0.16 4.1E-06   29.7   6.0  164    1-211     1-176 (560)
172 PRK04841 transcriptional regul  94.2    0.47 1.2E-05   26.7   9.8  115   66-182    32-165 (903)
173 cd03222 ABC_RNaseL_inhibitor T  94.2    0.14 3.6E-06   30.1   5.6  102   68-178    27-130 (177)
174 PRK10365 transcriptional regul  94.2    0.32 8.1E-06   27.8   7.5  123   64-195   160-299 (441)
175 PRK13544 consensus              94.1    0.49 1.2E-05   26.6  11.2   64  130-211   135-199 (208)
176 TIGR02902 spore_lonB ATP-depen  94.1    0.04   1E-06   33.5   2.8  141   64-239    84-271 (532)
177 cd03226 ABC_cobalt_CbiO_domain  94.1    0.29 7.4E-06   28.1   7.1   25   68-92     28-52  (205)
178 pfam00270 DEAD DEAD/DEAH box h  94.1    0.49 1.3E-05   26.6  10.1   16   68-83     16-31  (167)
179 PRK05917 DNA polymerase III su  94.0    0.11 2.8E-06   30.8   4.8  131   65-212    18-153 (290)
180 PRK07399 DNA polymerase III su  94.0    0.52 1.3E-05   26.4   9.8  126   66-212    26-181 (314)
181 pfam09848 DUF2075 Uncharacteri  94.0   0.073 1.8E-06   31.9   3.8   21   69-89      4-25  (348)
182 CHL00095 clpC Clp protease ATP  93.9    0.53 1.3E-05   26.4   8.1  114   62-186   534-668 (823)
183 PRK06305 DNA polymerase III su  93.9    0.37 9.4E-06   27.4   7.3  126   67-211    40-178 (462)
184 cd03234 ABCG_White The White s  93.8    0.57 1.5E-05   26.2  10.3   55  130-184   152-207 (226)
185 pfam00308 Bac_DnaA Bacterial d  93.6    0.19 4.8E-06   29.3   5.4   70  289-367    88-157 (219)
186 cd03230 ABC_DR_subfamily_A Thi  93.5   0.029 7.5E-07   34.4   1.1  111   69-182    29-157 (173)
187 COG0606 Predicted ATPase with   93.5   0.043 1.1E-06   33.4   1.9  122   64-191   196-347 (490)
188 pfam08298 AAA_PrkA PrkA AAA do  93.5   0.075 1.9E-06   31.8   3.1  209   65-338    84-312 (358)
189 KOG2543 consensus               93.4    0.65 1.7E-05   25.8   9.6  121   64-187    28-165 (438)
190 PRK13538 cytochrome c biogenes  93.4    0.26 6.7E-06   28.4   5.9   25   68-92     29-53  (204)
191 PRK10938 putative molybdenum t  93.4    0.67 1.7E-05   25.8   8.8   53  130-182   144-197 (490)
192 TIGR02928 TIGR02928 orc1/cdc6   93.3    0.21 5.3E-06   29.0   5.2   30   65-94     42-71  (383)
193 cd03237 ABC_RNaseL_inhibitor_d  93.3    0.58 1.5E-05   26.2   7.5  110   69-178    28-174 (246)
194 smart00763 AAA_PrkA PrkA AAA d  93.3   0.076 1.9E-06   31.8   2.9   75    9-90      5-102 (361)
195 PRK03695 vitamin B12-transport  93.3    0.69 1.8E-05   25.7   9.2   40  139-178   148-188 (245)
196 PRK10895 putative ABC transpor  93.2     0.7 1.8E-05   25.6   9.1   50  130-179   146-196 (241)
197 cd03298 ABC_ThiQ_thiamine_tran  93.1    0.73 1.9E-05   25.5   9.2   24   68-91     26-49  (211)
198 PRK10865 protein disaggregatio  93.1     0.6 1.5E-05   26.1   7.3  113   61-184   592-725 (857)
199 TIGR03258 PhnT 2-aminoethylpho  93.1    0.74 1.9E-05   25.5   7.8  135   68-202    33-246 (362)
200 PRK11160 cysteine/glutathione   93.0    0.68 1.7E-05   25.7   7.5   20  318-337   481-500 (575)
201 COG1120 FepC ABC-type cobalami  93.0    0.75 1.9E-05   25.5   7.8  151   67-244    29-237 (258)
202 KOG1803 consensus               93.0   0.032 8.2E-07   34.1   0.7   25   68-92    203-227 (649)
203 cd03271 ABC_UvrA_II The excisi  93.0    0.77   2E-05   25.4  10.1   19   66-84     21-39  (261)
204 cd03259 ABC_Carb_Solutes_like   92.9    0.38 9.6E-06   27.4   6.0   26   67-92     27-52  (213)
205 KOG0740 consensus               92.9   0.047 1.2E-06   33.1   1.3   27   61-87    181-207 (428)
206 cd03223 ABCD_peroxisomal_ALDP   92.8    0.41   1E-05   27.1   6.1  106   66-179    27-147 (166)
207 PRK08451 DNA polymerase III su  92.8   0.073 1.9E-06   31.9   2.2  127   66-211    36-174 (523)
208 cd03369 ABCC_NFT1 Domain 2 of   92.7    0.35 8.8E-06   27.6   5.6   25   68-92     36-60  (207)
209 PRK11247 ssuB aliphatic sulfon  92.6    0.76 1.9E-05   25.4   7.3  115   68-182    40-196 (257)
210 KOG1514 consensus               92.6   0.072 1.8E-06   31.9   2.1  129   64-196   420-575 (767)
211 TIGR00643 recG ATP-dependent D  92.5    0.15 3.9E-06   29.9   3.6   45   16-85    303-347 (721)
212 PRK05896 DNA polymerase III su  92.4    0.85 2.2E-05   25.1   7.3  127   66-211    38-176 (613)
213 pfam06745 KaiC KaiC. This fami  92.3     0.5 1.3E-05   26.6   6.0   42  139-180   119-165 (231)
214 KOG2227 consensus               92.2    0.51 1.3E-05   26.5   6.0  124   64-199   173-310 (529)
215 cd03300 ABC_PotA_N PotA is an   92.2    0.67 1.7E-05   25.8   6.6   25   68-92     28-52  (232)
216 PRK11000 maltose/maltodextrin   92.2    0.97 2.5E-05   24.7   9.5  135   68-202    31-243 (369)
217 cd03218 ABC_YhbG The ABC trans  92.1    0.98 2.5E-05   24.7   8.6   51  129-179   141-192 (232)
218 PRK05563 DNA polymerase III su  92.1    0.98 2.5E-05   24.7   9.6  160    1-211     1-176 (541)
219 PRK08058 DNA polymerase III su  92.1    0.62 1.6E-05   26.0   6.3  129   66-212    28-168 (329)
220 KOG0743 consensus               92.0    0.27 6.9E-06   28.3   4.3   27   64-90    233-259 (457)
221 PRK08769 DNA polymerase III su  92.0    0.46 1.2E-05   26.8   5.5  135   65-215    25-174 (319)
222 PRK13636 cbiO cobalt transport  91.9    0.36 9.1E-06   27.5   4.9   24   68-91     34-57  (285)
223 pfam01078 Mg_chelatase Magnesi  91.9    0.13 3.3E-06   30.3   2.6   26   67-92     23-48  (207)
224 TIGR00150 TIGR00150 conserved   91.8    0.15 3.9E-06   29.8   2.9   27   68-94     30-56  (147)
225 cd03268 ABC_BcrA_bacitracin_re  91.8    0.64 1.6E-05   25.9   6.1   52  131-182   136-188 (208)
226 PRK13407 bchI magnesium chelat  91.8    0.23   6E-06   28.7   3.8   28   65-92     28-55  (334)
227 PRK07003 DNA polymerase III su  91.7    0.78   2E-05   25.3   6.4  148    1-211     1-176 (816)
228 PRK09544 znuC high-affinity zi  91.7     1.1 2.8E-05   24.4   8.2  114   68-181    32-182 (251)
229 COG2204 AtoC Response regulato  91.7     1.1 2.8E-05   24.4   8.2  129   65-212   163-311 (464)
230 cd01882 BMS1 Bms1.  Bms1 is an  91.6    0.22 5.7E-06   28.8   3.6   97   61-182    34-144 (225)
231 PRK10876 recB exonuclease V su  91.6    0.59 1.5E-05   26.1   5.7   46  129-174   367-412 (1181)
232 PRK08903 hypothetical protein;  91.4    0.78   2E-05   25.4   6.1   62  294-367    86-148 (227)
233 cd01120 RecA-like_NTPases RecA  91.2     1.2 3.2E-05   24.1   7.2   22   69-90      2-23  (165)
234 TIGR00368 TIGR00368 Mg chelata  91.1    0.17 4.3E-06   29.6   2.5   26   66-91    213-238 (505)
235 cd01130 VirB11-like_ATPase Typ  91.0    0.84 2.1E-05   25.1   6.0   27   67-93     26-52  (186)
236 COG1061 SSL2 DNA or RNA helica  90.9     1.3 3.4E-05   23.9  10.1  135   15-181    31-184 (442)
237 PRK05564 DNA polymerase III su  90.8     0.9 2.3E-05   25.0   6.0  121   66-212    26-151 (313)
238 TIGR02546 III_secr_ATP type II  90.6    0.18 4.5E-06   29.4   2.2   27   66-92    153-179 (430)
239 KOG0989 consensus               90.5    0.99 2.5E-05   24.7   6.0  126   68-223    59-202 (346)
240 TIGR02759 TraD_Ftype type IV c  90.5    0.26 6.5E-06   28.4   3.0   92  287-392   439-544 (613)
241 PRK13639 cbiO cobalt transport  90.4     1.4 3.5E-05   23.8   6.7   24   68-91     30-53  (275)
242 TIGR03410 urea_trans_UrtE urea  90.4     1.5 3.7E-05   23.6  11.0   24   68-91     28-51  (230)
243 PRK06090 DNA polymerase III su  90.3    0.42 1.1E-05   27.1   4.0  133   65-213    24-167 (319)
244 TIGR02639 ClpA ATP-dependent C  89.7    0.34 8.6E-06   27.7   3.1  129   70-213   233-373 (774)
245 COG1074 RecB ATP-dependent exo  89.6     1.6 4.1E-05   23.3   6.5   74  100-175   330-416 (1139)
246 PRK05707 DNA polymerase III su  89.6    0.34 8.8E-06   27.6   3.1  132   66-213    22-165 (328)
247 PRK10771 thiQ thiamine transpo  89.5     1.7 4.4E-05   23.2   9.0   26   67-92     26-51  (233)
248 cd00046 DEXDc DEAD-like helica  89.5     1.7 4.4E-05   23.1   8.2   20   68-87      2-21  (144)
249 PRK04040 adenylate kinase; Pro  89.4    0.65 1.6E-05   25.9   4.3   45   66-111     2-46  (189)
250 PRK10917 ATP-dependent DNA hel  89.3    0.83 2.1E-05   25.2   4.9   42   65-106   277-329 (677)
251 TIGR03375 type_I_sec_LssB type  89.2     1.3 3.2E-05   24.0   5.7   44  291-338   583-626 (694)
252 PRK07940 DNA polymerase III su  89.1    0.51 1.3E-05   26.5   3.6  128   68-213    41-179 (395)
253 cd03239 ABC_SMC_head The struc  89.1     1.8 4.7E-05   23.0  10.0  112   66-179    22-158 (178)
254 pfam06309 Torsin Torsin. This   89.0    0.19 4.8E-06   29.2   1.4   31   62-92     49-79  (127)
255 COG1200 RecG RecG-like helicas  88.8     1.8 4.6E-05   23.1   6.3  115   66-184   283-426 (677)
256 KOG2170 consensus               88.7       2   5E-05   22.8   9.0  120   61-192   105-244 (344)
257 COG1132 MdlB ABC-type multidru  88.6       2   5E-05   22.8   7.2   28   65-92    354-381 (567)
258 PRK10247 putative ABC transpor  88.6       2 5.1E-05   22.8   9.8   25   67-91     34-58  (225)
259 PRK13765 ATP-dependent proteas  88.4    0.58 1.5E-05   26.2   3.5   28   66-93     50-77  (637)
260 cd03266 ABC_NatA_sodium_export  88.4     2.1 5.3E-05   22.7  11.4   51  131-181   146-197 (218)
261 PRK09302 circadian clock prote  88.2    0.57 1.4E-05   26.2   3.4   44  139-182   123-172 (501)
262 pfam05729 NACHT NACHT domain.   88.1     0.5 1.3E-05   26.6   3.0   22   68-89      2-23  (165)
263 PRK13543 cytochrome c biogenes  87.9     2.2 5.6E-05   22.5  10.0   27   65-91     36-62  (214)
264 pfam10236 DAP3 Mitochondrial r  87.8    0.44 1.1E-05   26.9   2.6   26   65-90     22-47  (274)
265 pfam02367 UPF0079 Uncharacteri  87.8    0.65 1.7E-05   25.8   3.5   88   67-184    16-104 (123)
266 PRK09112 DNA polymerase III su  87.8     2.2 5.7E-05   22.4   9.2  148  138-330   140-292 (352)
267 PRK09862 putative ATP-dependen  87.8    0.49 1.2E-05   26.6   2.8   28   65-92    209-236 (506)
268 PRK04328 hypothetical protein;  87.8     1.6 4.1E-05   23.4   5.5   24   68-91     26-50  (250)
269 PRK10908 cell division protein  87.7     2.3 5.8E-05   22.4   7.6   52  130-181   146-198 (222)
270 TIGR00609 recB exodeoxyribonuc  87.7     1.6 4.1E-05   23.3   5.4   79   94-175   369-462 (1324)
271 pfam01057 Parvo_NS1 Parvovirus  87.4     1.1 2.9E-05   24.4   4.5  120   65-212   112-238 (271)
272 PRK04863 mukB cell division pr  87.1    0.32 8.1E-06   27.8   1.6   48   46-102    15-62  (1486)
273 TIGR01194 cyc_pep_trnsptr cycl  87.0    0.58 1.5E-05   26.2   2.9   49   66-114   368-428 (555)
274 cd03213 ABCG_EPDR ABCG transpo  87.0     2.5 6.3E-05   22.2   6.6  112   68-185    37-176 (194)
275 pfam02562 PhoH PhoH-like prote  87.0     0.6 1.5E-05   26.1   2.9   34   19-83      2-36  (205)
276 PRK13900 type IV secretion sys  87.0     1.7 4.4E-05   23.2   5.2   28   66-93    160-187 (332)
277 cd01134 V_A-ATPase_A V/A-type   86.9     1.7 4.3E-05   23.2   5.1   24   67-90    158-181 (369)
278 PRK09361 radB DNA repair and r  86.5     2.6 6.7E-05   22.0   7.0   22   68-89     25-47  (224)
279 KOG1970 consensus               86.4     2.7 6.8E-05   22.0   9.6  107   64-179   108-239 (634)
280 smart00350 MCM minichromosome   86.4    0.99 2.5E-05   24.7   3.8  105   68-213   238-352 (509)
281 PRK09452 potA putrescine/sperm  86.3     2.7 6.9E-05   21.9   7.1   74  129-202   155-255 (378)
282 PRK10522 multidrug transporter  86.3     2.4   6E-05   22.3   5.7   20  319-338   455-474 (547)
283 PTZ00243 ABC transporter; Prov  86.2    0.95 2.4E-05   24.8   3.6  112   68-179   688-842 (1560)
284 KOG3928 consensus               86.0    0.92 2.3E-05   24.9   3.5   30   64-93    177-206 (461)
285 pfam01443 Viral_helicase1 Vira  85.9     1.6   4E-05   23.4   4.6   79   69-160     1-80  (226)
286 pfam07693 KAP_NTPase KAP famil  85.9     2.8 7.2E-05   21.8   9.8   29   64-92     18-46  (301)
287 pfam01580 FtsK_SpoIIIE FtsK/Sp  85.8     1.2 3.2E-05   24.1   4.0   23   68-90     40-62  (202)
288 TIGR01447 recD exodeoxyribonuc  85.7    0.47 1.2E-05   26.8   1.8  100   69-181   245-397 (753)
289 PRK10646 putative ATPase; Prov  85.5       1 2.6E-05   24.6   3.5   88   67-184    29-117 (153)
290 cd03261 ABC_Org_Solvent_Resist  85.3       3 7.7E-05   21.6   9.2   25   67-91     27-51  (235)
291 cd03293 ABC_NrtD_SsuB_transpor  85.2     3.1 7.8E-05   21.6   9.5   25   67-91     31-55  (220)
292 PRK06871 DNA polymerase III su  84.9    0.73 1.9E-05   25.5   2.5  131   66-213    23-165 (324)
293 KOG3859 consensus               84.8    0.47 1.2E-05   26.8   1.4   98  193-298   165-277 (406)
294 PRK11650 ugpC glycerol-3-phosp  84.7     3.2 8.2E-05   21.4   7.6   50  130-179   143-194 (358)
295 PRK11144 modC molybdate transp  84.7     3.2 8.2E-05   21.4  10.0   56  129-184   136-193 (352)
296 PRK13633 cobalt transporter AT  84.6     2.1 5.4E-05   22.6   4.8   24   68-91     39-62  (281)
297 COG0802 Predicted ATPase or ki  84.6       2 5.2E-05   22.7   4.7   89   66-184    25-114 (149)
298 TIGR02782 TrbB_P P-type conjug  84.5     2.5 6.4E-05   22.1   5.1   28   65-92    138-165 (315)
299 KOG0054 consensus               84.4     2.9 7.4E-05   21.7   5.4  114   67-180   548-704 (1381)
300 COG1203 CRISPR-associated heli  84.3     1.5 3.9E-05   23.5   3.9   44  141-184   340-384 (733)
301 cd01394 radB RadB. The archaea  84.2     3.4 8.6E-05   21.3   8.1   19   69-87     22-40  (218)
302 COG2766 PrkA Putative Ser prot  84.1    0.44 1.1E-05   26.9   1.1   24   64-87    101-124 (649)
303 PRK11819 putative ABC transpor  84.1     3.3 8.3E-05   21.4   5.5   45  129-177   171-218 (556)
304 TIGR02673 FtsE cell division A  83.8     3.5   9E-05   21.2   7.7  108   69-176    31-193 (215)
305 PRK10584 putative ABC transpor  83.7     3.6 9.1E-05   21.2   9.6   27   66-92     36-62  (228)
306 CHL00081 chlI Mg-protoporyphyr  83.6     1.7 4.4E-05   23.2   3.9   27   66-92     33-59  (347)
307 cd03292 ABC_FtsE_transporter F  83.5     3.6 9.3E-05   21.1  10.8   24   68-91     29-52  (214)
308 PRK05703 flhF flagellar biosyn  83.4     3.7 9.3E-05   21.1  10.4   59  287-348   330-390 (412)
309 pfam03215 Rad17 Rad17 cell cyc  83.1     3.8 9.6E-05   21.0  10.3   98   66-176    45-169 (490)
310 PRK07471 DNA polymerase III su  82.9     3.8 9.7E-05   21.0   6.6  160  137-339   137-300 (363)
311 PRK10762 D-ribose transporter   82.9     3.8 9.7E-05   21.0   5.5   54  129-182   149-203 (501)
312 cd02030 NDUO42 NADH:Ubiquinone  82.8     3.9 9.8E-05   20.9   7.0   22   69-90      2-23  (219)
313 pfam06414 Zeta_toxin Zeta toxi  82.7     2.1 5.3E-05   22.7   4.1   31   61-91      7-37  (191)
314 COG5245 DYN1 Dynein, heavy cha  82.7    0.67 1.7E-05   25.8   1.5   24   63-86   1491-1514(3164)
315 TIGR00763 lon ATP-dependent pr  82.5    0.61 1.6E-05   26.0   1.3  134   68-230   452-614 (941)
316 COG1100 GTPase SAR1 and relate  82.1     1.3 3.3E-05   23.9   2.8   26   68-93      7-32  (219)
317 TIGR02788 VirB11 P-type DNA tr  82.1     1.6   4E-05   23.4   3.2   33   62-94    154-186 (328)
318 TIGR02528 EutP ethanolamine ut  82.0    0.54 1.4E-05   26.4   0.9   19   69-87      3-21  (144)
319 COG4987 CydC ABC-type transpor  82.0     4.1 0.00011   20.7   8.9   23   66-88    364-386 (573)
320 cd03278 ABC_SMC_barmotin Barmo  81.9     4.2 0.00011   20.7   9.0   22   66-87     21-43  (197)
321 COG2884 FtsE Predicted ATPase   81.8     4.2 0.00011   20.7   6.4   46  131-176   147-193 (223)
322 PRK08533 flagellar accessory p  81.8     4.2 0.00011   20.7   8.9  114   67-180    25-163 (230)
323 pfam03266 DUF265 Protein of un  81.8     1.4 3.6E-05   23.7   3.0  130   69-211     2-156 (168)
324 KOG3889 consensus               81.6     3.5   9E-05   21.2   4.9  159  126-305    96-266 (371)
325 COG2019 AdkA Archaeal adenylat  81.3     2.6 6.6E-05   22.1   4.1   45   66-112     4-48  (189)
326 pfam06068 TIP49 TIP49 C-termin  81.1     3.7 9.4E-05   21.1   4.9   27   65-91     49-75  (395)
327 TIGR03522 GldA_ABC_ATP gliding  81.1     4.4 0.00011   20.6   9.7   53  129-182   141-194 (301)
328 PRK13648 cbiO cobalt transport  80.6     4.6 0.00012   20.4   9.4   24   68-91     37-60  (269)
329 COG2274 SunT ABC-type bacterio  80.4     4.7 0.00012   20.4   6.8  115   65-181   496-669 (709)
330 PRK13695 putative NTPase; Prov  80.4     1.8 4.5E-05   23.1   3.0   24   68-91      5-28  (174)
331 COG4988 CydD ABC-type transpor  80.3     4.7 0.00012   20.4   6.5   65  131-214   466-531 (559)
332 PRK06851 hypothetical protein;  80.2     1.3 3.3E-05   23.9   2.3   42   45-90     14-55  (368)
333 TIGR03238 dnd_assoc_3 dnd syst  79.9     3.8 9.6E-05   21.0   4.6   25   64-88     30-54  (504)
334 PRK05800 cobU adenosylcobinami  79.7     2.6 6.5E-05   22.1   3.7   18   69-86      4-21  (170)
335 KOG0990 consensus               79.7       2 5.2E-05   22.7   3.2   90   68-182    64-173 (360)
336 PRK11701 phnK phosphonates tra  79.6       5 0.00013   20.3  10.0   25   68-92     34-58  (258)
337 PRK13851 type IV secretion sys  79.4     2.3 5.7E-05   22.4   3.3   28   66-93    162-189 (343)
338 PRK07276 DNA polymerase III su  79.4       5 0.00013   20.2   6.0  131   69-218    26-168 (290)
339 PRK13909 putative recombinatio  79.3     5.1 0.00013   20.2   7.6   41  128-168   314-354 (911)
340 TIGR02237 recomb_radB DNA repa  79.2    0.91 2.3E-05   24.9   1.3   11   71-81     17-27  (223)
341 pfam04851 ResIII Type III rest  79.1     4.8 0.00012   20.4   4.9   88   19-166     2-89  (103)
342 PRK05342 clpX ATP-dependent pr  79.0     5.2 0.00013   20.1   8.1   29   65-93    108-136 (411)
343 COG2804 PulE Type II secretory  78.9     2.6 6.6E-05   22.1   3.5  114  261-381   219-387 (500)
344 cd01123 Rad51_DMC1_radA Rad51_  78.6     1.8 4.6E-05   23.1   2.6   24   66-89     18-43  (235)
345 PRK05201 hslU ATP-dependent pr  78.5     5.3 0.00014   20.0   7.2   70    8-92      7-76  (442)
346 cd01128 rho_factor Transcripti  78.4     1.7 4.4E-05   23.2   2.5   24   67-90     17-40  (249)
347 pfam00493 MCM MCM2/3/5 family.  78.4     2.3 5.8E-05   22.4   3.1   24   68-91     59-82  (327)
348 cd03219 ABC_Mj1267_LivG_branch  78.0     5.6 0.00014   19.9   6.3   25   68-92     28-52  (236)
349 cd03296 ABC_CysA_sulfate_impor  77.6     5.7 0.00015   19.9  11.3   24   68-91     30-53  (239)
350 TIGR01249 pro_imino_pep_1 prol  77.3     1.2 3.1E-05   24.1   1.4  109   68-204    30-166 (310)
351 PRK07993 DNA polymerase III su  77.1     3.2 8.2E-05   21.4   3.5  133   65-213    23-167 (334)
352 pfam04310 MukB MukB N-terminal  77.0       1 2.6E-05   24.6   1.0   33   68-101    29-61  (227)
353 PRK11664 ATP-dependent RNA hel  77.0     5.9 0.00015   19.8  10.8  135   68-216    22-181 (812)
354 COG1224 TIP49 DNA helicase TIP  76.5     2.2 5.7E-05   22.4   2.6   27   65-91     64-90  (450)
355 COG1131 CcmA ABC-type multidru  76.5     6.1 0.00016   19.7   6.1   52  130-181   145-198 (293)
356 PRK10689 transcription-repair   76.3     6.2 0.00016   19.6   7.8   24   68-91     16-39  (1148)
357 pfam00437 GSPII_E Type II/IV s  76.3     3.5 8.8E-05   21.2   3.5   31  178-208   112-143 (283)
358 KOG0480 consensus               75.9     3.7 9.4E-05   21.1   3.6  252   63-340   372-697 (764)
359 pfam03796 DnaB_C DnaB-like hel  75.7     6.4 0.00016   19.5   8.4   19   69-87     22-40  (186)
360 PRK11288 araG L-arabinose tran  75.6     6.5 0.00016   19.5   5.5   54  129-182   148-202 (501)
361 TIGR00382 clpX ATP-dependent C  75.3     3.2 8.1E-05   21.5   3.1  205   68-308   154-387 (452)
362 COG5192 BMS1 GTP-binding prote  75.0       6 0.00015   19.7   4.5  100   62-187    65-178 (1077)
363 PRK01172 ski2-like helicase; P  74.9     6.7 0.00017   19.4  11.8  140    6-182     8-181 (674)
364 PRK01156 chromosome segregatio  74.9     2.6 6.7E-05   22.0   2.6   39  288-330   817-855 (895)
365 cd03264 ABC_drug_resistance_li  74.6     6.8 0.00017   19.4   9.7   21   71-91     30-50  (211)
366 cd01129 PulE-GspE PulE/GspE Th  74.6     6.9 0.00017   19.4   4.8  122   66-197    79-206 (264)
367 pfam03237 Terminase_6 Terminas  74.6     6.1 0.00015   19.7   4.4  112   71-183     2-138 (380)
368 cd03225 ABC_cobalt_CbiO_domain  74.5     6.9 0.00018   19.3   6.1   24   68-91     29-52  (211)
369 PRK08853 DNA polymerase III su  74.4     3.2 8.1E-05   21.5   2.9  148    1-211     1-176 (717)
370 pfam05272 VirE Virulence-assoc  74.3     3.2 8.1E-05   21.5   2.9  123   68-245    54-191 (198)
371 PRK10851 sulfate/thiosulfate t  74.3       7 0.00018   19.3  11.4   68  130-197   145-239 (352)
372 cd03114 ArgK-like The function  74.0     1.7 4.4E-05   23.1   1.5   21   70-90      3-23  (148)
373 TIGR02031 BchD-ChlD magnesium   73.9     3.2 8.1E-05   21.5   2.8  105   66-174    17-160 (705)
374 cd03215 ABC_Carb_Monos_II This  73.7     7.2 0.00018   19.2   5.9  115   67-182    27-166 (182)
375 KOG0057 consensus               73.6     7.2 0.00018   19.2   7.4   21   71-91    285-305 (591)
376 cd02022 DPCK Dephospho-coenzym  73.6     2.5 6.3E-05   22.2   2.2   20   69-88      2-21  (179)
377 PRK10246 exonuclease subunit S  73.5     3.1 7.9E-05   21.5   2.7   16   71-86     35-50  (1047)
378 PRK10536 hypothetical protein;  73.3     2.5 6.3E-05   22.2   2.1  134   67-211    75-244 (262)
379 pfam05970 DUF889 PIF1 helicase  73.2     2.1 5.4E-05   22.6   1.8   95   73-177     1-119 (418)
380 cd04153 Arl5_Arl8 Arl5/Arl8 su  72.9     4.2 0.00011   20.7   3.3   35   49-87      2-36  (174)
381 KOG0478 consensus               72.9     7.5 0.00019   19.1   4.6  122   45-185   437-574 (804)
382 COG4778 PhnL ABC-type phosphon  72.8       4  0.0001   20.9   3.1   27   65-91     36-62  (235)
383 PRK11889 flhF flagellar biosyn  72.8     7.6 0.00019   19.1   9.3   69  278-347   290-368 (436)
384 PRK13635 cbiO cobalt transport  72.7     7.6 0.00019   19.1   6.0   25   68-92     35-59  (279)
385 PRK06964 DNA polymerase III su  72.3     7.7  0.0002   19.0   5.2  133   66-213    21-191 (342)
386 cd03235 ABC_Metallic_Cations A  72.3     7.8  0.0002   19.0   5.9   26   67-92     26-51  (213)
387 PRK13537 lipooligosaccharide t  72.3     7.8  0.0002   19.0   6.3   54  129-182   144-198 (304)
388 PRK13700 conjugal transfer pro  72.3     3.2 8.2E-05   21.4   2.6   31   63-93    182-212 (732)
389 PRK13542 consensus              72.0     7.9  0.0002   19.0   6.4   25   68-92     46-70  (224)
390 COG1219 ClpX ATP-dependent pro  72.0     4.6 0.00012   20.5   3.3   28   66-93     97-124 (408)
391 cd01131 PilT Pilus retraction   72.0     3.3 8.3E-05   21.4   2.5   82   67-149     1-84  (198)
392 COG1643 HrpA HrpA-like helicas  71.9     7.9  0.0002   19.0  13.6  135   65-217    64-228 (845)
393 PRK13894 conjugal transfer ATP  71.8     4.3 0.00011   20.7   3.1   26   66-91    149-174 (320)
394 COG2401 ABC-type ATPase fused   71.6       8  0.0002   18.9   4.4   22  222-243   311-332 (593)
395 cd03240 ABC_Rad50 The catalyti  71.5     8.1 0.00021   18.9  11.5   22   69-90     25-46  (204)
396 PRK13768 GTPase; Provisional    71.4     4.7 0.00012   20.4   3.2   25   67-91      3-27  (253)
397 cd01125 repA Hexameric Replica  71.2     2.5 6.3E-05   22.2   1.7   16   70-85      5-20  (239)
398 COG5265 ATM1 ABC-type transpor  71.0     8.3 0.00021   18.8   7.5   25   67-91    290-314 (497)
399 cd02875 GH18_chitobiase Chitob  70.9       7 0.00018   19.3   4.0   44  160-204    67-111 (358)
400 COG3267 ExeA Type II secretory  70.4     8.5 0.00022   18.7   9.2  142   69-224    54-216 (269)
401 KOG1969 consensus               70.2       6 0.00015   19.7   3.5  135   60-218   320-473 (877)
402 PRK03918 chromosome segregatio  70.2     3.9 9.9E-05   20.9   2.6  100  238-346   751-862 (882)
403 cd01122 GP4d_helicase GP4d_hel  70.0     8.7 0.00022   18.7   5.5   21   69-89     33-53  (271)
404 TIGR01192 chvA glucan exporter  69.8     8.8 0.00022   18.7   7.6  112   65-176   360-527 (592)
405 pfam00625 Guanylate_kin Guanyl  69.7     5.9 0.00015   19.8   3.4   25   68-92      3-27  (182)
406 PTZ00112 origin recognition co  69.7     3.1 7.9E-05   21.6   2.0  137   64-206   291-458 (650)
407 PRK07413 hypothetical protein;  69.6     8.3 0.00021   18.8   4.2  166   68-249    21-228 (382)
408 TIGR01618 phage_P_loop phage n  69.4     2.2 5.6E-05   22.5   1.2  116   67-223    14-158 (229)
409 cd02027 APSK Adenosine 5'-phos  69.4       9 0.00023   18.6   6.4  108   69-219     2-112 (149)
410 KOG0927 consensus               69.3       9 0.00023   18.6   6.6   46  131-178   231-277 (614)
411 PRK13833 conjugal transfer pro  69.0     5.4 0.00014   20.0   3.1   25   67-91    145-169 (323)
412 PRK03839 putative kinase; Prov  68.7       7 0.00018   19.3   3.6   34   69-105     3-36  (180)
413 COG1674 FtsK DNA segregation A  68.5     9.4 0.00024   18.5  10.3   69  140-221   640-715 (858)
414 TIGR02324 CP_lyasePhnL phospho  68.4     4.8 0.00012   20.4   2.7  110   64-174    32-203 (224)
415 pfam02283 CobU Cobinamide kina  68.3     7.1 0.00018   19.3   3.6   22   69-90      1-22  (166)
416 TIGR00634 recN DNA repair prot  68.3     3.2 8.1E-05   21.5   1.8   19  293-311   515-533 (605)
417 COG4133 CcmA ABC-type transpor  68.2     9.5 0.00024   18.5   8.5  116   65-180    27-190 (209)
418 PRK11831 putative ABC transpor  68.2     9.5 0.00024   18.5   5.9   52  130-181   153-206 (269)
419 PTZ00265 multidrug resistance   68.2     9.5 0.00024   18.5   6.8   24   64-87    409-432 (1467)
420 PRK00081 coaE dephospho-CoA ki  68.1       4  0.0001   20.8   2.3   20   69-88      5-24  (199)
421 PRK12608 transcription termina  68.1       6 0.00015   19.7   3.2   33  141-184   166-200 (379)
422 TIGR00957 MRP_assoc_pro multi   67.9     3.3 8.3E-05   21.4   1.8   74    8-90    610-691 (1542)
423 PRK04296 thymidine kinase; Pro  67.8     4.8 0.00012   20.4   2.6   70  136-215    77-146 (197)
424 pfam01121 CoaE Dephospho-CoA k  67.5     4.1  0.0001   20.8   2.2   20   69-88      3-22  (179)
425 TIGR00960 3a0501s02 Type II (G  67.3     5.7 0.00014   19.9   2.9  108   68-175    31-193 (216)
426 PRK07132 DNA polymerase III su  66.6      10 0.00026   18.3   5.9  124   66-212    20-150 (303)
427 cd00984 DnaB_C DnaB helicase C  66.6      10 0.00026   18.3   8.9   22   69-90     16-38  (242)
428 COG0210 UvrD Superfamily I DNA  66.4      10 0.00026   18.2   5.1   82  130-218   204-285 (655)
429 COG0378 HypB Ni2+-binding GTPa  66.4     3.6 9.1E-05   21.2   1.8   24   67-90     14-37  (202)
430 TIGR03263 guanyl_kin guanylate  66.3     7.7  0.0002   19.1   3.4   24   68-91      3-26  (180)
431 TIGR03185 DNA_S_dndD DNA sulfu  66.2     6.3 0.00016   19.6   3.0   39   68-106    30-73  (650)
432 pfam02456 Adeno_IVa2 Adenoviru  66.1       5 0.00013   20.2   2.5   24   66-89     87-110 (370)
433 PRK11747 dinG ATP-dependent DN  66.0      10 0.00027   18.2   6.9   54    4-81      8-62  (697)
434 COG0630 VirB11 Type IV secreto  66.0     8.2 0.00021   18.9   3.5  110   65-183   142-255 (312)
435 cd03255 ABC_MJ0796_Lo1CDE_FtsE  65.8      11 0.00027   18.2   8.8   49  131-179   150-200 (218)
436 PRK00300 gmk guanylate kinase;  65.4     8.1 0.00021   18.9   3.4   26   67-92      8-33  (208)
437 PRK09493 glnQ glutamine ABC tr  65.3      11 0.00028   18.1   5.9   24   68-91     29-52  (240)
438 COG4913 Uncharacterized protei  65.2     5.5 0.00014   20.0   2.5   27  298-326  1021-1047(1104)
439 PRK10869 recombination and rep  65.2     5.1 0.00013   20.2   2.3   21   70-90     26-46  (553)
440 PRK09984 phosphonate/organopho  65.0      11 0.00028   18.1   5.9   52  129-180   160-213 (262)
441 cd03265 ABC_DrrA DrrA is the A  65.0      11 0.00028   18.1   5.9   52  130-181   140-193 (220)
442 PRK08118 topology modulation p  64.9     7.7  0.0002   19.0   3.2   26   68-93      3-28  (167)
443 PRK08691 DNA polymerase III su  64.8     3.2 8.1E-05   21.5   1.3  159    1-211     1-176 (704)
444 PRK07594 type III secretion sy  64.6       5 0.00013   20.2   2.2   26   66-91    155-180 (433)
445 PRK09700 D-allose transporter   64.6      11 0.00028   18.0   5.6   56  129-184   153-209 (510)
446 pfam03029 ATP_bind_1 Conserved  64.4     3.6 9.2E-05   21.1   1.5   21   72-92      2-22  (234)
447 TIGR00101 ureG urease accessor  64.3     5.3 0.00013   20.1   2.3   24   69-92      4-27  (199)
448 COG0419 SbcC ATPase involved i  64.2       6 0.00015   19.7   2.6   23   69-91     28-50  (908)
449 KOG1942 consensus               64.2     4.7 0.00012   20.4   2.0   27   64-90     62-88  (456)
450 KOG0056 consensus               64.1      11 0.00029   18.0   9.0   21  198-218   513-533 (790)
451 PRK06067 flagellar accessory p  63.8      12 0.00029   17.9   6.9   26   66-91     32-58  (241)
452 pfam00448 SRP54 SRP54-type pro  63.7      12  0.0003   17.9   9.1  192   66-365     1-194 (196)
453 TIGR00929 VirB4_CagE type IV s  63.3     6.4 0.00016   19.5   2.6   73  139-219   754-833 (931)
454 cd01127 TrwB Bacterial conjuga  63.2     8.7 0.00022   18.7   3.2   29   61-89     37-65  (410)
455 PRK11607 potG putrescine trans  63.2      12  0.0003   17.9   8.0   72  130-201   158-256 (377)
456 TIGR02982 heterocyst_DevA ABC   63.2     6.1 0.00015   19.7   2.4   20   68-87     33-52  (220)
457 TIGR02640 gas_vesic_GvpN gas v  63.1     4.8 0.00012   20.3   1.9  120   67-211    22-183 (265)
458 pfam11004 DUF2843 Protein of u  63.0     7.8  0.0002   19.0   3.0   31   78-112   181-211 (281)
459 PRK10982 galactose/methyl gala  63.0      12  0.0003   17.8   5.6   54  130-183   143-197 (491)
460 TIGR00073 hypB hydrogenase acc  63.0     5.4 0.00014   20.0   2.2   28   68-95     36-63  (225)
461 COG0055 AtpD F0F1-type ATP syn  62.9       3 7.6E-05   21.6   0.8   23   69-91    150-172 (468)
462 cd03280 ABC_MutS2 MutS2 homolo  62.9      12 0.00031   17.8   9.6   97   65-181    27-152 (200)
463 cd03279 ABC_sbcCD SbcCD and ot  62.8     6.6 0.00017   19.5   2.6   25   68-92     30-54  (213)
464 COG4917 EutP Ethanolamine util  62.7       5 0.00013   20.3   1.9   77   68-188     3-84  (148)
465 smart00010 small_GTPase Small   62.6     8.1 0.00021   18.9   3.0   22   68-89      2-23  (124)
466 cd01892 Miro2 Miro2 subfamily.  62.6     7.6 0.00019   19.1   2.9   20   69-88      7-26  (169)
467 KOG0745 consensus               62.5     8.9 0.00023   18.6   3.2   28   66-93    226-253 (564)
468 PRK13830 conjugal transfer pro  62.3     6.9 0.00018   19.3   2.6   23   69-91    459-481 (818)
469 cd00071 GMPK Guanosine monopho  62.3     9.4 0.00024   18.5   3.3   24   69-92      2-25  (137)
470 PRK09694 hypothetical protein;  62.2      12 0.00032   17.7   4.8   49  136-184   438-486 (878)
471 cd02025 PanK Pantothenate kina  62.1     7.2 0.00018   19.2   2.6   21   70-90      3-23  (220)
472 pfam03308 ArgK ArgK protein. T  62.1      10 0.00025   18.3   3.4   23   68-90     31-53  (267)
473 COG4525 TauB ABC-type taurine   62.0     6.9 0.00018   19.3   2.5   27   66-92     31-57  (259)
474 pfam06048 DUF927 Domain of unk  62.0      12 0.00032   17.7   6.5   19  160-180    72-90  (284)
475 PRK05480 uridine kinase; Provi  61.8     8.2 0.00021   18.9   2.9   26   66-91      6-31  (209)
476 COG1198 PriA Primosomal protei  61.8      13 0.00032   17.7   8.3   49  138-188   312-367 (730)
477 smart00177 ARF ARF-like small   61.7     8.7 0.00022   18.7   3.0   31   48-86      3-33  (175)
478 PRK08149 ATP synthase SpaL; Va  61.6     7.2 0.00018   19.2   2.6   25   67-91    151-175 (427)
479 PRK10875 recD exonuclease V su  61.6     6.6 0.00017   19.4   2.4   40  139-181   260-300 (607)
480 PRK11231 fecE iron-dicitrate t  61.6      13 0.00032   17.7   6.0   67  129-213   146-214 (255)
481 PTZ00111 DNA replication licen  61.4     6.4 0.00016   19.6   2.3   99   68-184   495-605 (916)
482 cd01673 dNK Deoxyribonucleosid  61.4      10 0.00026   18.3   3.3   22   69-90      2-23  (193)
483 cd02023 UMPK Uridine monophosp  60.9     8.7 0.00022   18.7   2.9   23   69-91      2-24  (198)
484 cd03241 ABC_RecN RecN ATPase i  60.7     6.8 0.00017   19.4   2.3   23   70-92     25-47  (276)
485 TIGR03265 PhnT2 putative 2-ami  60.5     6.5 0.00017   19.5   2.2  111   68-178    32-193 (353)
486 COG3911 Predicted ATPase [Gene  60.3     6.8 0.00017   19.4   2.3   22   68-89     11-32  (183)
487 PRK13644 cbiO cobalt transport  60.2      13 0.00034   17.5   6.0   49  131-179   146-195 (274)
488 cd04155 Arl3 Arl3 subfamily.    60.1      12 0.00032   17.7   3.6   23   65-88     14-36  (173)
489 PRK13647 cbiO cobalt transport  60.1      13 0.00034   17.5   6.0   42  277-322   226-267 (273)
490 COG5440 Uncharacterized conser  60.1      13 0.00034   17.5   4.4   44  162-205    87-137 (161)
491 cd00544 CobU Adenosylcobinamid  59.9     8.3 0.00021   18.8   2.7   18   69-86      2-19  (169)
492 PRK10619 histidine/lysine/argi  59.7      14 0.00035   17.5   5.9   23   68-90     33-55  (257)
493 COG0466 Lon ATP-dependent Lon   59.7     8.6 0.00022   18.7   2.7  188    8-217   253-499 (782)
494 PRK09270 frcK putative fructos  59.7      10 0.00026   18.3   3.1   26   66-91     34-59  (230)
495 pfam00071 Ras Ras family. Incl  59.5     9.9 0.00025   18.4   3.0   21   69-89      2-22  (162)
496 cd01393 recA_like RecA is a  b  59.5       6 0.00015   19.7   1.9   19   69-87     22-40  (226)
497 CHL00181 cbbX CbbX; Provisiona  59.2      13 0.00033   17.6   3.5   25   65-89     58-82  (287)
498 KOG0394 consensus               58.8      11 0.00027   18.1   3.1   22   66-87      9-30  (210)
499 COG3829 RocR Transcriptional r  58.7      14 0.00036   17.4   5.0  121   64-192   266-403 (560)
500 PRK13873 conjugal transfer ATP  58.7     9.5 0.00024   18.5   2.8   22   69-90    444-465 (815)

No 1  
>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=100.00  E-value=0  Score=914.42  Aligned_cols=358  Identities=36%  Similarity=0.621  Sum_probs=337.7

Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf             58999999997488778989999999999999998613543-33225664310246666668864998888877289999
Q gi|254781047|r    5 LVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQ-EQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLM   83 (404)
Q Consensus         5 ~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LM   83 (404)
                      ++.++|+++|++|.+.+|++|.+++.+||+|+++|..+.+. +.+.++++|.+   +++..+||||||||+|||||||||
T Consensus         2 tP~~~Y~~~v~~g~l~~D~~Q~~a~~~L~~L~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~kGlYl~G~VGrGKTmLM   78 (361)
T pfam03969         2 TPPQRYTAQLQRGAIFPDVAQANAVPALDRLYQRLQAADFVRQSGAGGKLWGR---KRSHQPVRGLYLWGGVGRGKTHLM   78 (361)
T ss_pred             CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCC---CCCCCCCCEEEEECCCCCCHHHHH
T ss_conf             87999999986799999989999999999999999715565555234443157---887999986898899888699999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHH
Q ss_conf             99998578111468889999999999999971311224665578078999999613879998423204713588899999
Q gi|254781047|r   84 NLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLF  163 (404)
Q Consensus        84 dlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~  163 (404)
                      |+||+++|+++|+|+|||+||++||++||++++        .+|||..||++++++++|||||||||+||||||||+|||
T Consensus        79 DlFy~~lp~~~K~R~HFh~FM~~vH~~l~~~~~--------~~dpl~~va~~l~~~~~lLCfDEFqV~DIaDAMIL~rLf  150 (361)
T pfam03969        79 DSFFESLPGERKRRTHFHRFMFRVHDELTTLQG--------GDDPLPIAADRFANEARLLCFDEFEVDDIGDAMILGRLF  150 (361)
T ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHC--------CCCCHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHH
T ss_conf             999986775344456678999999999999766--------776389999999725877997635616788899999999


Q ss_pred             HHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHCCCCCCCEEEECCCHHHHHHHHHHH
Q ss_conf             99985496899817868677523874056689899999850508980473112211236783022035302268999999
Q gi|254781047|r  164 AALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMDKLW  243 (404)
Q Consensus       164 ~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DYR~~~~~~~~~y~~p~~~~~~~~l~~~f  243 (404)
                      +.||++||+||+|||++|++||+|||||++|+|||++|+++|+|++|+|++|||++...+.+.|++|.++++...++++|
T Consensus       151 ~~Lf~~gvvlV~TSN~~P~~LY~~GLqR~~FlPfI~ll~~~~~v~~l~~~~DYR~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (361)
T pfam03969       151 EALFARGVSLVATSNTAPEQLYRNGLNRQRFLPAIDLLESHFEVVRVDGPVDYRLRTLEQAPLWLYPLDGAAWAALDRLW  230 (361)
T ss_pred             HHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             99997797899808999899836874177889999999986789981598780546565565400578666689999999


Q ss_pred             HHHCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf             98604444677632763680899612202111101999852102468999998537889981898787246389998999
Q gi|254781047|r  244 AHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIM  323 (404)
Q Consensus       244 ~~l~~~~~~~~~~i~v~~gR~i~v~~~~~~va~f~F~eLC~~~lg~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~  323 (404)
                      ..++++.+....++.+ +||++++++++++|+||+|++||++|+|++||++||++|+||||+|||+|+..+.|+|||||+
T Consensus       231 ~~l~~~~~~~~~~l~v-~gR~i~v~~~~~~v~~f~F~~LC~~p~~~~DYl~ia~~f~~v~i~~VP~l~~~~~d~arRFI~  309 (361)
T pfam03969       231 DALTLGEPQPLSTLEV-AARLARARAAGGDLVWFSFADLCLAPRHPSDYLALAERFSTVFLTDVPPMTRCSQDEARRFIA  309 (361)
T ss_pred             HHHHCCCCCCCCCEEE-CCEEEEEHHHCCCEECCCHHHHHHCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHH
T ss_conf             9970899899751104-463775021038850012888866558889999999869999988998899987089999999


Q ss_pred             HHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             99998228982899807897880134676531348998988745242788972
Q gi|254781047|r  324 LIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLYEMFSAQYIGK  376 (404)
Q Consensus       324 LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~EMqS~~yl~~  376 (404)
                      |||+|||++++|+++|+++|++|  |.|++++|+|+||+|||+||||++||++
T Consensus       310 LID~lYd~~~kL~~sa~~~~~~L--y~g~~~~f~f~Rt~SRL~EM~s~~yl~r  360 (361)
T pfam03969       310 LVDELYDRHVKLVASAEAALDDL--YRGGRLAFEFQRTLSRLLEMQSEDYLAR  360 (361)
T ss_pred             HHHHHHCCCCCEEEECCCCHHHH--CCCCCCHHHHHHHHHHHHHHCCHHHHHC
T ss_conf             99998407997899878999996--4898420110498799999687877626


No 2  
>COG1485 Predicted ATPase [General function prediction only]
Probab=100.00  E-value=0  Score=870.90  Aligned_cols=361  Identities=38%  Similarity=0.702  Sum_probs=343.0

Q ss_pred             CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf             70058999999997488778989999999999999998613543332256643102466666688649988888772899
Q gi|254781047|r    2 SLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSM   81 (404)
Q Consensus         2 ~~~~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~   81 (404)
                      ...++.++|.++++.|.+.+|++|..++.+|++|++++.......+ .+.|+|++     .+.+|||+|+||||||||||
T Consensus         7 ~~~sp~~~y~~~~~~~~~~~D~aQ~~a~~~Ldrl~~~~~~~~~~~~-~l~~lf~r-----~~~~~~GlYl~GgVGrGKT~   80 (367)
T COG1485           7 PTMSPVERYAQLVPAGTFQPDPAQPAAAAALDRLYDELVAPRSARK-ALGWLFGR-----DHGPVRGLYLWGGVGRGKTM   80 (367)
T ss_pred             CCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCC-----CCCCCCEEEEECCCCCCHHH
T ss_conf             8779899999750567788886789999999999998626444555-21110036-----88888358888997864999


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHH
Q ss_conf             99999985781114688899999999999999713112246655780789999996138799984232047135888999
Q gi|254781047|r   82 LMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSR  161 (404)
Q Consensus        82 LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~r  161 (404)
                      |||+||+++|..+|+|+|||+||.+||++|+.++|        +.|||..+|++++++++|||||||+|+||||||||+|
T Consensus        81 LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g--------~~dpl~~iA~~~~~~~~vLCfDEF~VtDI~DAMiL~r  152 (367)
T COG1485          81 LMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQG--------QTDPLPPIADELAAETRVLCFDEFEVTDIADAMILGR  152 (367)
T ss_pred             HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC--------CCCCCHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHH
T ss_conf             99999865876456655077999999999999718--------8886579999998417889863036237578899999


Q ss_pred             HHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHCCCCCCCEEEECCCHHHHHHHHH
Q ss_conf             99999854968998178686775238740566898999998505089804731122112367830220353022689999
Q gi|254781047|r  162 LFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMDK  241 (404)
Q Consensus       162 l~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DYR~~~~~~~~~y~~p~~~~~~~~l~~  241 (404)
                      ||++||.+||+||+|||++|++||+|||||++|||||++||++|+|+++||++|||++...++++|++|.+.++++.|++
T Consensus       153 L~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~v~~vD~~~DYR~r~l~~a~~y~~Pl~~~~~~~l~~  232 (367)
T COG1485         153 LLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEVVNVDGPVDYRLRKLEQAPVYLTPLDAEAEAALDK  232 (367)
T ss_pred             HHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCEEECCCCHHHHHHHHH
T ss_conf             99999977968999589996785446025776377999998754799705876623566666744554786788999999


Q ss_pred             HHHHHCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHH
Q ss_conf             99986044446776327636808996122021111019998521024689999985378899818987872463899989
Q gi|254781047|r  242 LWAHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFDVVIINDIPLLKEDRKDWIKRF  321 (404)
Q Consensus       242 ~f~~l~~~~~~~~~~i~v~~gR~i~v~~~~~~va~f~F~eLC~~~lg~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRF  321 (404)
                      +|..++++.+..+..+.+ .||+|.+++.+++++||+|.+||..|+|+.||++||++||||+|+|||+|+...+|+||||
T Consensus       233 ~~~~ls~~~~~~~~~l~i-~gR~i~~~~~~~~~~~f~f~~Lc~~p~s~~DYl~l~~~f~tv~l~~vp~m~~~~~~~arRF  311 (367)
T COG1485         233 LWAALSDGAPEAAANLEI-KGREIRVPAVAGGLLWFDFAQLCEAPRSASDYLALAERFHTVFLTDVPQMDPLDRDEARRF  311 (367)
T ss_pred             HHHHHCCCCCCCCCHHHC-CCCEEECCCCCCCCHHCCHHHHHHCCCCHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHH
T ss_conf             998733587667740112-5831002355686012239988528577888999986234899868877880226899999


Q ss_pred             HHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCC
Q ss_conf             9999998228982899807897880134676531348998988745242788972444
Q gi|254781047|r  322 IMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLYEMFSAQYIGKNKI  379 (404)
Q Consensus       322 I~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~EMqS~~yl~~~~~  379 (404)
                      |+|||++||++++|++||+++|++|  |+++.++|||+||+|||.||||.+|+..+|+
T Consensus       312 I~lVD~lYD~~vkL~~Sae~~~~~L--y~~~~~afeF~Rt~SRL~EMqS~~yl~~~~~  367 (367)
T COG1485         312 IALVDELYDRGVKLVASAEVPLNEL--YQGGRLAFEFQRTLSRLQEMQSEEYLGIPHR  367 (367)
T ss_pred             HHHHHHHHHCCCCEEEECCCCHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9999999864884799756789995--2572144588999999999888886415579


No 3  
>KOG2383 consensus
Probab=100.00  E-value=0  Score=823.19  Aligned_cols=377  Identities=36%  Similarity=0.622  Sum_probs=326.6

Q ss_pred             CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCC------CCHHHHHHHCCC------CC-----CCC
Q ss_conf             7005899999999748877898999999999999999861-35433------322566431024------66-----666
Q gi|254781047|r    2 SLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYK-QQKQE------QGIFSWLWNLRG------IK-----RKY   63 (404)
Q Consensus         2 ~~~~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~-~~~~~------~~~~~~~~~~~~------~~-----~~~   63 (404)
                      ....+.+.|..+|+.|.+..|+.|..++..+++|+.+..+ ++|.-      ....+|.+....      ..     ..+
T Consensus        32 ~~~tpl~~y~k~V~~g~l~~d~yq~~~~~~~~~L~~~~~e~y~p~~~~~~~~~e~~r~i~~l~k~~~~~k~~~~~a~~~~  111 (467)
T KOG2383          32 FLLTPLKEYSKLVNTGTLKSDPYQRKTVSAFERLYHELIEYYDPRLKQWSAKREEGRWIFELKKSFDDGKLDTPNASGQP  111 (467)
T ss_pred             CCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             13686667776742475347811210189999997646663695211565312356688999988751576786545788


Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----CCCCHHHHHHHHHH
Q ss_conf             6886499888887728999999998578-11146888999999999999997131122466-----55780789999996
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVP-IEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEI-----LESDPIPLVASSIA  137 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~-~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~-----~~~dpl~~va~~l~  137 (404)
                      .+||||||||+|||||||||||||+++| +.+|+|+|||+||+.||.++|+++++.+..+.     ..-||++.||++|+
T Consensus       112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eIa  191 (467)
T KOG2383         112 GPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEIA  191 (467)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             99846899635675446778877632784013444039999999999999999841654655333466786178999985


Q ss_pred             CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHH
Q ss_conf             13879998423204713588899999999854968998178686775238740566898999998505089804731122
Q gi|254781047|r  138 LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYR  217 (404)
Q Consensus       138 ~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DYR  217 (404)
                      .++.|||||||||+||||||||+|||++||++|||+||||||+|+|||+|||||+.|+|||.+|+++|.|+.|||+.|||
T Consensus       192 ~ea~lLCFDEfQVTDVADAmiL~rLf~~Lf~~GvVlvATSNR~P~dLYknGlQR~~F~PfI~~L~~rc~vi~ldS~vDYR  271 (467)
T KOG2383         192 EEAILLCFDEFQVTDVADAMILKRLFEHLFKNGVVLVATSNRAPEDLYKNGLQRENFIPFIALLEERCKVIQLDSGVDYR  271 (467)
T ss_pred             HHCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHEEEECCCCCCHH
T ss_conf             50303431201013688999999999999738759998278985888624302553006899998763688658853353


Q ss_pred             HCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCC-CCCCEEEECCEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHH
Q ss_conf             11236783022035302268999999986044446-77632763680899612202111101999852102468999998
Q gi|254781047|r  218 RKEQSILPIYMTPLNSYNRVLMDKLWAHITKGKKS-LSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIA  296 (404)
Q Consensus       218 ~~~~~~~~~y~~p~~~~~~~~l~~~f~~l~~~~~~-~~~~i~v~~gR~i~v~~~~~~va~f~F~eLC~~~lg~~DYi~Ia  296 (404)
                      +..-+....|+.+...+.+..+++.|+.+..+... ....++++.||++.+|.+|++||||+|++||++|+|++||+.||
T Consensus       272 ~~~~~~~~~~yf~~~~d~~~~l~~~fk~~~~dq~d~~~~~~l~v~GR~l~vpk~cg~VA~ftFeeLC~rPlgAaDYL~la  351 (467)
T KOG2383         272 RKAKSAGENYYFISETDVETVLKEWFKLLAADQNDGTRQRTLVVFGRKLIVPKACGGVADFTFEELCGRPLGAADYLGLA  351 (467)
T ss_pred             HCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCEEEECCCCCCCCCCCHHHHCCCCCCHHHHHHHH
T ss_conf             30577775367248002789999999997435888777742267522677025578703122998708954247799997


Q ss_pred             HHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCC---------------------------
Q ss_conf             53788998189878724638999899999998228982899807897880134---------------------------
Q gi|254781047|r  297 NRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPY---------------------------  349 (404)
Q Consensus       297 ~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~~~---------------------------  349 (404)
                      ++||||+|+|||+|+.+++|++||||+|||++||++++|+|||++|+++||+.                           
T Consensus       352 k~fhti~v~dIP~lsl~~r~~~rRFITliD~lYd~~~rlv~sa~~p~~~Lf~~~~~~e~ls~s~r~~mddl~iks~~~~~  431 (467)
T KOG2383         352 KNFHTIIVRDIPQLSLENRDQARRFITLIDALYDNHVRLVCSAATPLEELFQFTGHSEALSDSPRTLMDDLGIKSDSAGG  431 (467)
T ss_pred             HHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCC
T ss_conf             64245776065111057788776787898888635723896478878987445675321255753110011334567665


Q ss_pred             ----CCCCCCHHHHHHHHHHHHHCCHHHHHHCC
Q ss_conf             ----67653134899898874524278897244
Q gi|254781047|r  350 ----KLRKGAFEIQRTVSRLYEMFSAQYIGKNK  378 (404)
Q Consensus       350 ----~~~~~~F~f~Rt~SRL~EMqS~~yl~~~~  378 (404)
                          .|.++.|+|+||+|||+|||++.|+..+.
T Consensus       432 ~~mf~g~EE~FAf~RtlSRL~eMqt~~y~~~~~  464 (467)
T KOG2383         432 SPMFSGEEEGFAFDRTLSRLYEMQTELYWEQPY  464 (467)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             542256188888888988999850210033566


No 4  
>PRK08939 primosomal protein DnaI; Reviewed
Probab=99.52  E-value=2e-12  Score=98.95  Aligned_cols=139  Identities=19%  Similarity=0.294  Sum_probs=103.5

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             68864998888877289999999985781114--6888999999999999997131122466557807899999961387
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKK--CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR  141 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K--~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~  141 (404)
                      ...||+||||++|+|||+||....+.+..+.+  .=+|+-+|+.++-+.+.             .+...... +..++++
T Consensus       155 ~~~kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~v~~p~~~~~lK~s~~-------------d~s~~~~i-~~~k~~~  220 (306)
T PRK08939        155 EKVKGLYLYGDFGVGKTYLLAAIANELAKKGVSSTLVHFPEFIRELKNAIS-------------DGSVKEKI-DAVKEAP  220 (306)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHC-------------CCCHHHHH-HHHHCCC
T ss_conf             888778898999998999999999999986992999875999999999864-------------89889999-9984499


Q ss_pred             EEEEEEEEECCCHHHH---HHHHHHHHHHHCCCEEEEECCCCHHHHH------CCCCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf             9998423204713588---8999999998549689981786867752------387405668989999985050898047
Q gi|254781047|r  142 VLCFDEFMITNIADAI---ILSRLFAALFSHGCIIVMTSNFIPENLY------KDEINRNVLVSFIELLEKKLEIISLDS  212 (404)
Q Consensus       142 lLCfDEF~V~DiaDAm---il~rl~~~lf~~gv~lV~TSN~~P~dLY------~~GLqR~~FlPfI~~lk~~~~V~~l~~  212 (404)
                      ||-+|.+=-+.++.-.   +|+-+++.=..++...++|||..|++|=      ++|-..-.=..-++-|+.-|..+.|.|
T Consensus       221 vLiLDDiGaE~~t~W~rd~vl~~IL~~Rm~~~lPTffTSN~~~~eLe~~l~~~~~~~e~~ka~RimeRI~~l~~~v~l~G  300 (306)
T PRK08939        221 VLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHLAYTQRGDETVKAARIMERIRYLAKEVHLEG  300 (306)
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCEEEEECC
T ss_conf             89984446542677789989999999999749997997799999999998632699537999999999998573587147


Q ss_pred             CCHHH
Q ss_conf             31122
Q gi|254781047|r  213 GQDYR  217 (404)
Q Consensus       213 ~~DYR  217 (404)
                       .+.|
T Consensus       301 -~nrR  304 (306)
T PRK08939        301 -KNRR  304 (306)
T ss_pred             -CCCC
T ss_conf             -7778


No 5  
>PRK08116 hypothetical protein; Validated
Probab=99.46  E-value=2.7e-12  Score=98.09  Aligned_cols=139  Identities=15%  Similarity=0.182  Sum_probs=97.0

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE
Q ss_conf             8864998888877289999999985781114--68889999999999999971311224665578078999999613879
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKK--CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRV  142 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K--~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~l  142 (404)
                      ..+|+||||+||+|||+|+-..-..+-...+  .-+++-+|+.++.+......          .+.-..+.+. ..+++|
T Consensus       107 ~~~GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~~ll~~lk~~~~~~~----------~~~~~e~l~~-l~~~dL  175 (262)
T PRK08116        107 ESVGLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVPELLNRIKSTYNSEG----------KEDENEIIRA-LDNADL  175 (262)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCC----------CHHHHHHHHH-HHCCCE
T ss_conf             68618998989998999999999999987993999889999999999986356----------1019999998-612998


Q ss_pred             EEEEEEEECCCHHHH--HHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHCC
Q ss_conf             998423204713588--899999999854968998178686775238740566898999998505089804731122112
Q gi|254781047|r  143 LCFDEFMITNIADAI--ILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKE  220 (404)
Q Consensus       143 LCfDEF~V~DiaDAm--il~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DYR~~~  220 (404)
                      |-+|++-.....+..  .|-.++..-...+-.+|+|||.+|++|-.- +    =-...+-|...|..+++. |.|||+..
T Consensus       176 LIiDDlG~e~~t~w~~e~lf~IIn~Ry~~~kptIiTTNl~~~eL~~~-~----~~Ri~sRl~e~~~~v~~~-G~d~R~~~  249 (262)
T PRK08116        176 LILDDLGAEKDTEWVREKLYNIIDSRYRKGLPTIFTTNLSLEELKNQ-Y----GKRTYSRILEMCTPVKNE-GKSYRREI  249 (262)
T ss_pred             EEEEHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHH-H----HHHHHHHHHHCCEEEEEE-CCCHHHHH
T ss_conf             99832214569878999999999999976999899879999999998-6----379999998677899851-77887999


No 6  
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.18  E-value=2.9e-10  Score=85.20  Aligned_cols=104  Identities=20%  Similarity=0.250  Sum_probs=78.7

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE
Q ss_conf             6499888887728999999998578----111468889999999999999971311224665578078999999613879
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVP----IEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRV  142 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~----~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~l  142 (404)
                      +=|||||++|.|||+||.+.-+.+-    ..+-..+.=-+||.++...+.   .          +.++..-+.+ .++++
T Consensus       146 NPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~tae~F~~~~v~al~---~----------~~~~~Fr~~y-r~~Dv  211 (447)
T PRK00149        146 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVSSEKFTNDFVKALR---N----------NAMEEFKEKY-RSVDV  211 (447)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHH---C----------CCHHHHHHHH-HCCCE
T ss_conf             85589779988788999999999998589972899549999999999985---1----------8699999999-72885


Q ss_pred             EEEEEEEECCCHHH--HHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf             99842320471358--8899999999854968998178686775
Q gi|254781047|r  143 LCFDEFMITNIADA--IILSRLFAALFSHGCIIVMTSNFIPENL  184 (404)
Q Consensus       143 LCfDEF~V~DiaDA--mil~rl~~~lf~~gv~lV~TSN~~P~dL  184 (404)
                      |.+|..|.--=-++  ..+-..|..|.+.|--+|+||.++|.+|
T Consensus       212 LliDDiqfl~gk~~tqeeff~~fn~l~~~~kqiv~tsd~~P~~l  255 (447)
T PRK00149        212 LLIDDIQFLAGKEKTQEEFFHTFNALHENNKQIVITSDRPPKEL  255 (447)
T ss_pred             EEECHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHC
T ss_conf             43214888605577999999999999984996899578896765


No 7  
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=99.15  E-value=3.1e-09  Score=78.72  Aligned_cols=142  Identities=13%  Similarity=0.135  Sum_probs=97.7

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             886499888887728999999998578111468---88999999999999997131122466557807899999961387
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCR---LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR  141 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R---~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~  141 (404)
                      .+.|+|++|++|+|||+|.-+.-..+- .+..|   ++..+||.+++.....             +....--.....+++
T Consensus       104 ~~~nl~l~G~~G~GKthLa~Ai~~~l~-~~g~sv~f~~~~el~~~Lk~~~~~-------------~~~~~~l~~~l~~~d  169 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITAPDLLSKLKAAFDE-------------GRLEEKLLRELKKVD  169 (254)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEEEEHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHCC
T ss_conf             588289989999879999999999999-839849998859999999998745-------------526899998875289


Q ss_pred             EEEEEEEEE--CCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHC
Q ss_conf             999842320--471358889999999985496899817868677523874056689899999850508980473112211
Q gi|254781047|r  142 VLCFDEFMI--TNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRK  219 (404)
Q Consensus       142 lLCfDEF~V--~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DYR~~  219 (404)
                      ||-+||+-.  .+.--|-++-.++.......-. ++|||.+++++..--=....=..-++-|..++.++.+. |..||+.
T Consensus       170 lLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~-~~tsN~~~~~~~~~~~~~~~~e~~~dRi~~~~~~~~~~-g~s~rl~  247 (254)
T COG1484         170 LLIIDDIGYEPFSQEEADLLFQLISRRYESRSL-IITSNLSFGEWDELFGDDALTEALLDRILHHSHVIVIK-GESYRLN  247 (254)
T ss_pred             EEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEECCCHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEC-CHHHHHH
T ss_conf             899823677668815587999999999973054-20205882788866067511689999998616103761-5167653


Q ss_pred             CCC
Q ss_conf             236
Q gi|254781047|r  220 EQS  222 (404)
Q Consensus       220 ~~~  222 (404)
                      ...
T Consensus       248 ~~~  250 (254)
T COG1484         248 VRR  250 (254)
T ss_pred             CCC
T ss_conf             022


No 8  
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.15  E-value=9.5e-10  Score=81.96  Aligned_cols=103  Identities=22%  Similarity=0.323  Sum_probs=78.3

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf             6499888887728999999998578111468889---9999999999999713112246655780789999996138799
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHF---YEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL  143 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HF---h~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL  143 (404)
                      +-|||||+||.|||+||.+.-+.+..+. .|+-|   .+||.++-..|.   .          +.+...-+.+ .++++|
T Consensus       142 NPLfIyG~~GlGKTHLL~AIgn~i~~~~-~kV~Yvtae~F~~~~v~ai~---~----------~~~~~Fr~~y-r~~DvL  206 (455)
T PRK12422        142 NPIYLFGPEGSGKTHLMQAAVSALRESG-GKILYVSSELFTEHLVSAIR---S----------GEMQRFRSFY-RNVDAL  206 (455)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHH---C----------CCHHHHHHHH-HCCCEE
T ss_conf             8758878999978999999999853799-86999749999999999997---5----------8899999999-638877


Q ss_pred             EEEEEEECC--CHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf             984232047--13588899999999854968998178686775
Q gi|254781047|r  144 CFDEFMITN--IADAIILSRLFAALFSHGCIIVMTSNFIPENL  184 (404)
Q Consensus       144 CfDEF~V~D--iaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL  184 (404)
                      .+|..|---  -.--..+=..|.+|.+.|--+|.||.++|.+|
T Consensus       207 LIDDIQfl~gK~~tqeEff~tfN~L~~~~KQIVitsDr~P~el  249 (455)
T PRK12422        207 FIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSSYAPGDL  249 (455)
T ss_pred             EEEHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
T ss_conf             6314788728488999999999999985996999689895765


No 9  
>PRK06526 transposase; Provisional
Probab=99.05  E-value=1.6e-08  Score=74.14  Aligned_cols=143  Identities=18%  Similarity=0.187  Sum_probs=96.9

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf             88649988888772899999999857811146888999999999999997131122466557807899999961387999
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC  144 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC  144 (404)
                      ..+-|-+.|++|+|||+|.-.+-..+ +..-.++-|-..-. +-++|...+.         ...+....+.+ ..++||.
T Consensus        97 ~~~Nvil~G~~GtGKThLA~Alg~~A-~~~G~~v~f~~~~~-L~~~L~~a~~---------~g~~~~~~~~l-~~~dLLI  164 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRA-CQAGHRVLFATAAQ-WVARLAAAHH---------AGRLQDELVKL-GRIPLLI  164 (254)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH-HHCCCCEEEEEHHH-HHHHHHHHHH---------CCCHHHHHHHH-HCCCEEE
T ss_conf             58878998999986899999999999-98699679987799-9999999885---------58099999985-1368776


Q ss_pred             EEEEEEC--CCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCH-HHHHHHHHHHHHCCEEEECCCCCHHHHCCC
Q ss_conf             8423204--7135888999999998549689981786867752387405-668989999985050898047311221123
Q gi|254781047|r  145 FDEFMIT--NIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINR-NVLVSFIELLEKKLEIISLDSGQDYRRKEQ  221 (404)
Q Consensus       145 fDEF~V~--DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR-~~FlPfI~~lk~~~~V~~l~~~~DYR~~~~  221 (404)
                      +|||-..  |-..|-+|=.++..-.+++ -+|+|||.+|++-|.= +.= ..=-.-++-|-.+|.+++++| .-||+++.
T Consensus       165 iDe~g~~~~~~~~a~~lf~li~~Rye~~-S~IiTSn~~~~~W~~~-f~D~~la~AilDRL~H~a~~i~~~G-~SyR~k~r  241 (254)
T PRK06526        165 VDEVGYIPFEAEAANLFFQLVSSRYERA-SLIVTSNKPFGRWGEV-FGDDVVAAAMIDRLVHHAEVISLKG-DSYRLKDR  241 (254)
T ss_pred             EECCCCCCCCHHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHHH-CCCHHHHHHHHHHHCCCEEEEEECC-CCCCCCCC
T ss_conf             5021364478899999999999997458-8676658986688886-4868999999998625628998438-86653557


Q ss_pred             C
Q ss_conf             6
Q gi|254781047|r  222 S  222 (404)
Q Consensus       222 ~  222 (404)
                      .
T Consensus       242 ~  242 (254)
T PRK06526        242 D  242 (254)
T ss_pred             C
T ss_conf             6


No 10 
>PRK09183 transposase/IS protein; Provisional
Probab=99.03  E-value=3.8e-09  Score=78.14  Aligned_cols=148  Identities=16%  Similarity=0.224  Sum_probs=100.8

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf             88649988888772899999999857811146888999999999999997131122466557807899999961387999
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC  144 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC  144 (404)
                      ...-|-|.|++|+|||+|--.+-..+- ....++.|-.. .++-.+|...+.         ...+....+.....++||-
T Consensus       100 ~~~Nvil~G~~GtGKThLA~Alg~~A~-~~G~~v~f~~~-~~L~~~L~~a~~---------~~~~~~~l~r~l~~~dLLI  168 (258)
T PRK09183        100 RNENIVLLGPSGVGKTHLAIALGYEAV-RAGIKVRFTTA-ADLLLQLSTAQR---------QGRYKTTLQRGVMAPRLLI  168 (258)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEEEEH-HHHHHHHHHHHH---------CCCHHHHHHHHHCCCCEEE
T ss_conf             588679989999868999999999999-87993999789-999999999987---------6859999998743465144


Q ss_pred             EEEE--EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHH-HHHHHHHHHHHCCEEEECCCCCHHHHCCC
Q ss_conf             8423--20471358889999999985496899817868677523874056-68989999985050898047311221123
Q gi|254781047|r  145 FDEF--MITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRN-VLVSFIELLEKKLEIISLDSGQDYRRKEQ  221 (404)
Q Consensus       145 fDEF--~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~-~FlPfI~~lk~~~~V~~l~~~~DYR~~~~  221 (404)
                      +|||  .--+-..|-+|=.++..-.+++ -+|+|||.++++-|.-=.+=. .=-..++-|-.+|.+++++ |.-||++..
T Consensus       169 iDdlG~~~~~~~~~~~lfeli~~Rye~~-S~IiTSn~~~~~W~~~f~~D~~la~AilDRL~H~a~~i~l~-GeSyR~k~~  246 (258)
T PRK09183        169 IDEIGYLPFSQEEANLFFQVIAKRYEKG-AMILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHVVQIK-GESYRLKQK  246 (258)
T ss_pred             EHHHHCCCCCHHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEC-CCCCCHHHH
T ss_conf             3133154688889999999999985767-78998899978985651686999999999860461799745-877237658


Q ss_pred             CCCC
Q ss_conf             6783
Q gi|254781047|r  222 SILP  225 (404)
Q Consensus       222 ~~~~  225 (404)
                      ..++
T Consensus       247 ~k~~  250 (258)
T PRK09183        247 RKAG  250 (258)
T ss_pred             HHCC
T ss_conf             7557


No 11 
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.02  E-value=2.5e-09  Score=79.25  Aligned_cols=126  Identities=20%  Similarity=0.274  Sum_probs=82.3

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             86499888887728999999998578----11146888999999999999997131122466557807899999961387
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVP----IEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR  141 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~----~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~  141 (404)
                      -.=+|||||||.|||+||.+.-+.+-    ..+-.-++=-.||.+.=.   ..+.          +-++..-+.+  +++
T Consensus       113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~---a~~~----------~~~~~Fk~~y--~~d  177 (408)
T COG0593         113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVK---ALRD----------NEMEKFKEKY--SLD  177 (408)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHH---HHHH----------HHHHHHHHHH--CCC
T ss_conf             895799879999789999999999986299864885048998999999---9885----------0488888764--267


Q ss_pred             EEEEEEEEEC--CCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCC-H--HHHHHHHHHHHHCCEEEECCCCCHH
Q ss_conf             9998423204--713588899999999854968998178686775238740-5--6689899999850508980473112
Q gi|254781047|r  142 VLCFDEFMIT--NIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEIN-R--NVLVSFIELLEKKLEIISLDSGQDY  216 (404)
Q Consensus       142 lLCfDEF~V~--DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLq-R--~~FlPfI~~lk~~~~V~~l~~~~DY  216 (404)
                      +||||-.|.-  +-..-.-+=.+|..|.+.|-.||.||.++|.+|  +++. |  .||        +-+.++++..+.|.
T Consensus       178 lllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l--~~~~~rL~SR~--------~~Gl~~~I~~Pd~e  247 (408)
T COG0593         178 LLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKEL--NGLEDRLRSRL--------EWGLVVEIEPPDDE  247 (408)
T ss_pred             EEEECHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH--CCCCHHHHHHH--------HCEEEEEECCCCHH
T ss_conf             355513867567715799999999988850887999707883221--10358899898--------63057752798889


No 12 
>PRK08181 transposase; Validated
Probab=98.96  E-value=9.3e-09  Score=75.65  Aligned_cols=142  Identities=18%  Similarity=0.237  Sum_probs=96.8

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf             88649988888772899999999857811146888999999999999997131122466557807899999961387999
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC  144 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC  144 (404)
                      ...-|-+.|++|+|||+|--.+-..+- ....++.|-..-. +-+.|...+.         ...+....+.+ .+++||.
T Consensus       105 ~~~Nvil~Gp~GtGKThLA~Alg~~A~-~~G~~V~f~~~~~-L~~~L~~a~~---------~~~~~~~~~~l-~~~dLLI  172 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALI-ENGWRVLFTRTTD-LVQKLQVARR---------ELQLESAIAKL-DKFDLLI  172 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEEEEHHH-HHHHHHHHHH---------CCCHHHHHHHH-HCCCEEE
T ss_conf             487089989999878899999999999-8799399978999-9999999775---------58399999997-4446012


Q ss_pred             EEEEEECCC--HHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHCC
Q ss_conf             842320471--3588899999999854968998178686775238740566898999998505089804731122112
Q gi|254781047|r  145 FDEFMITNI--ADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKE  220 (404)
Q Consensus       145 fDEF~V~Di--aDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DYR~~~  220 (404)
                      +|||--..+  ..|-+|=.++..-.+++ -+|+|||.++++=|.==-..-.=-.-++-|-.+|.+++++| .-||++.
T Consensus       173 iDe~G~~~~~~~~~~~lf~lI~~Rye~~-S~IITSn~~~~~W~~~f~D~~la~AiLDRLvH~a~~i~l~G-eSyR~k~  248 (269)
T PRK08181        173 LDDLAYVTKDQAETSVLFELISARYERR-SILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNV-ESYRRRT  248 (269)
T ss_pred             EHHCCCCCCCHHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCEEEEEECC-CCCCCHH
T ss_conf             2010566799899999999999985788-88998899977887753868899999998701528997558-7612056


No 13 
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=98.96  E-value=4.6e-09  Score=77.57  Aligned_cols=104  Identities=23%  Similarity=0.300  Sum_probs=68.7

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCC-HHHH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE
Q ss_conf             649988888772899999999857811-1468---889999999999999971311224665578078999999613879
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIE-KKCR---LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRV  142 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~-~K~R---~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~l  142 (404)
                      +.+||||+.|+|||+|+......+... ...+   +.-.+|..+.-..+   +.          +.+....+ -...+++
T Consensus        35 npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~~~~~~~~~~~l---~~----------~~~~~f~~-~l~~~d~  100 (219)
T pfam00308        35 NPLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTSEEFLNDFVDAL---RD----------NKIEAFKK-SYRNVDL  100 (219)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHH---HC----------CCHHHHHH-HHHHCCH
T ss_conf             8269988999988899999999999849998288843999999889999---81----------88889999-9763233


Q ss_pred             EEEEEEEEC--CCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf             998423204--713588899999999854968998178686775
Q gi|254781047|r  143 LCFDEFMIT--NIADAIILSRLFAALFSHGCIIVMTSNFIPENL  184 (404)
Q Consensus       143 LCfDEF~V~--DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL  184 (404)
                      ||+|.+|.-  +-..--.|-.++..+.+.|..+|+||+.+|.+|
T Consensus       101 l~iDDi~~l~~~~~~ee~lf~l~N~~~~~~~~lllts~~~p~~l  144 (219)
T pfam00308       101 LLIDDIQFLAGKEKTQEEFFHTFNALHENNKQIVLTSDRPPKEL  144 (219)
T ss_pred             HHHCCHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf             65223676568647899999999999972986999779981002


No 14 
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.94  E-value=5.6e-08  Score=70.68  Aligned_cols=136  Identities=15%  Similarity=0.180  Sum_probs=90.5

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE
Q ss_conf             8864998888877289999999985781114--68889999999999999971311224665578078999999613879
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKK--CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRV  142 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K--~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~l  142 (404)
                      ...|++.+|+||+|||+|.-..-+.+-.+.+  .-+..-++|..+.+--    ++..       ..-..+ -....+++|
T Consensus        95 ~~~gLlF~G~~GTGKThLA~aIan~Li~~G~sVlf~t~~dLl~~lr~t~----~~~~-------~~e~~~-l~~l~~~dL  162 (242)
T PRK07952         95 NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTF----RNSE-------TSEEQL-LNDLSNVDL  162 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHH----HCCC-------CCHHHH-HHHHHCCCE
T ss_conf             8871799789999789999999999998799499977999999999998----0687-------569999-998631898


Q ss_pred             EEEEEEEECCCHHH--HHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHH--HHHHHH-HHCCEEEECCCCCHHH
Q ss_conf             99842320471358--889999999985496899817868677523874056689--899999-8505089804731122
Q gi|254781047|r  143 LCFDEFMITNIADA--IILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLV--SFIELL-EKKLEIISLDSGQDYR  217 (404)
Q Consensus       143 LCfDEF~V~DiaDA--mil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~Fl--PfI~~l-k~~~~V~~l~~~~DYR  217 (404)
                      |-+||+=+.-.++.  .+|-.++..=....-.+|.|||..+++|-+       ++  -.++-| ..+|.+++++ +..||
T Consensus       163 LIiDdlG~e~~t~~~~~~lf~iId~Ry~~~kp~IitTNl~~~eL~~-------~lGeR~~dRl~~~~~~~l~f~-w~SyR  234 (242)
T PRK07952        163 LVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTK-------LLGERVMDRMRLGNSLWVIFN-WDSYR  234 (242)
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH-------HHHHHHHHHHHHCCCEEEEEC-CCCCC
T ss_conf             9873014665888899999999999997169889981799999999-------970899999972798599606-70501


Q ss_pred             HCC
Q ss_conf             112
Q gi|254781047|r  218 RKE  220 (404)
Q Consensus       218 ~~~  220 (404)
                      .+-
T Consensus       235 ~~i  237 (242)
T PRK07952        235 SRV  237 (242)
T ss_pred             CCC
T ss_conf             234


No 15 
>PRK05642 DNA replication initiation factor; Validated
Probab=98.94  E-value=4.6e-09  Score=77.57  Aligned_cols=97  Identities=19%  Similarity=0.228  Sum_probs=65.1

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf             64998888877289999999985781114688899999999999999713112246655780789999996138799984
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFD  146 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfD  146 (404)
                      +=+||||++|.|||+||.+....+.... .+..|... .+..+..                 .+  .-+-..++.+||+|
T Consensus        46 ~~l~i~G~~G~GKTHLL~A~~~~~~~~~-~~~~yl~~-~~~~~~~-----------------~~--~~~~l~~~d~l~ID  104 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRG-EPAVYLPL-AELLDRG-----------------PE--LLDNLEQYELVCID  104 (234)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEEH-HHHHHHH-----------------HH--HHHHHHHCCEEEEE
T ss_conf             8389988999988999999999998079-96799789-9987544-----------------99--98624227989893


Q ss_pred             EEEEC--CCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf             23204--713588899999999854968998178686775
Q gi|254781047|r  147 EFMIT--NIADAIILSRLFAALFSHGCIIVMTSNFIPENL  184 (404)
Q Consensus       147 EF~V~--DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL  184 (404)
                      -+|.-  +-.---.+=.+|..+.+.|..+|+||+++|.+|
T Consensus       105 Di~~i~g~~~~e~~lF~l~N~~~~~~~~llits~~~P~~l  144 (234)
T PRK05642        105 DLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPREL  144 (234)
T ss_pred             CHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
T ss_conf             6455468859999999999999983995999578795552


No 16 
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.92  E-value=5.7e-09  Score=77.01  Aligned_cols=90  Identities=20%  Similarity=0.328  Sum_probs=63.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH------HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             49988888772899999999857811146888999------999999999997131122466557807899999961387
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYE------FMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR  141 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~------FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~  141 (404)
                      -+||||++|.|||+||.+..+.+.... +++.|-.      |+.++-                          +=.....
T Consensus        47 ~l~l~G~~G~GKTHLLqA~~~~~~~~~-~~~~yl~~~~~~~~~~~~l--------------------------~~l~~~d   99 (235)
T PRK08084         47 YIYLWGREGAGRSHLLHAACAELSQRG-DAVGYVPLDKRAWFVPEVL--------------------------EGMEQLS   99 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCC-CCEEEEEHHHHHHHHHHHH--------------------------HHHHHCC
T ss_conf             699989999888999999999997079-8579987798665179999--------------------------8764189


Q ss_pred             EEEEEEEEEC--CCHHHHHHHHHHHHHHHCC-CEEEEECCCCHHHH
Q ss_conf             9998423204--7135888999999998549-68998178686775
Q gi|254781047|r  142 VLCFDEFMIT--NIADAIILSRLFAALFSHG-CIIVMTSNFIPENL  184 (404)
Q Consensus       142 lLCfDEF~V~--DiaDAmil~rl~~~lf~~g-v~lV~TSN~~P~dL  184 (404)
                      +||+|-+|.-  +..--..+=.+|..+.+.| ..||+||+++|.+|
T Consensus       100 ll~iDDi~~i~g~~~~ee~lF~l~N~~~~~g~~~ll~ts~~~P~~l  145 (235)
T PRK08084        100 LVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQL  145 (235)
T ss_pred             EEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHC
T ss_conf             8998274554699789999999999999848966999679882430


No 17 
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.92  E-value=1.1e-08  Score=75.19  Aligned_cols=94  Identities=18%  Similarity=0.224  Sum_probs=65.7

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf             6499888887728999999998578111468889---9999999999999713112246655780789999996138799
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHF---YEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL  143 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HF---h~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL  143 (404)
                      +-+||||+.|+|||+|+....+.+.... +++-|   .+|+...-..                       -+-.+++++|
T Consensus        39 ~~l~i~G~~GsGKTHLl~a~~~~~~~~~-~~~~yl~~~~~~~~~~~~-----------------------l~~l~~~d~l   94 (226)
T TIGR03420        39 RFLYLWGESGSGKSHLLQAACAAAEERG-KSAIYLPLAELAQADPEV-----------------------LEGLEQADLV   94 (226)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHCCC-CCEEEECHHHHHHHHHHH-----------------------HHHCCCCCEE
T ss_conf             8699989999988999999999986269-957995299987753999-----------------------9727448999


Q ss_pred             EEEEEEECC--CHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf             984232047--13588899999999854968998178686775
Q gi|254781047|r  144 CFDEFMITN--IADAIILSRLFAALFSHGCIIVMTSNFIPENL  184 (404)
Q Consensus       144 CfDEF~V~D--iaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL  184 (404)
                      |+|.+|.-.  -..-..+=.++..+.+.|..+|.||.++|.++
T Consensus        95 ~iDDi~~i~~~~~~e~~lF~l~N~~~~~~~~ilits~~~p~~l  137 (226)
T TIGR03420        95 CLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQL  137 (226)
T ss_pred             EEECHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHC
T ss_conf             9966333437837899999999999865282898678882320


No 18 
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.87  E-value=3e-08  Score=72.41  Aligned_cols=136  Identities=16%  Similarity=0.248  Sum_probs=87.7

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             688649988888772899999999857811146888---99999999999999713112246655780789999996138
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLH---FYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALES  140 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~H---Fh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~  140 (404)
                      ....|||+||+||+|||+|....-..+-.+.+ .+-   .-++|..    |...+....      . ....+ -+...++
T Consensus       181 ~~~~nLlf~G~~G~GKTfLa~~IA~ell~~g~-sViy~ta~~L~~~----l~~~~~~~~------~-~~~~~-~~~l~~~  247 (330)
T PRK06835        181 KNNENLLFYGNTGTGKTFLSNCIAKELLDRGK-TVIYRTSDELIEN----LREIRFNND------N-DAPEL-EDLLINC  247 (330)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC-EEEEEEHHHHHHH----HHHHHCCCC------C-CHHHH-HHHHHHC
T ss_conf             88886698899999889999999999998799-4999629999999----999754576------4-48999-9999618


Q ss_pred             CEEEEEEEEECCCHHHHHHHH---HHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHH-HHHHHHHHCCEEEECCCCCHH
Q ss_conf             799984232047135888999---9999985496899817868677523874056689-899999850508980473112
Q gi|254781047|r  141 RVLCFDEFMITNIADAIILSR---LFAALFSHGCIIVMTSNFIPENLYKDEINRNVLV-SFIELLEKKLEIISLDSGQDY  216 (404)
Q Consensus       141 ~lLCfDEF~V~DiaDAmil~r---l~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~Fl-PfI~~lk~~~~V~~l~~~~DY  216 (404)
                      +||-+|++-..-..+ -....   ++..-...+-..|.|||..|++|-.      .+- .-..-|-.+|.++++-| .|.
T Consensus       248 DLLIIDDLG~E~~t~-~~~~~Lf~iIN~R~~~~k~tIITTNl~~~eL~~------~y~eRi~SRi~~~~~~~~~~G-~Di  319 (330)
T PRK06835        248 DLLIIDDLGTESITE-FSKTELFNLINKRLLMNKKMIISTNLSLEELLK------TYSERIASRLLGNFTLLKFYG-EDI  319 (330)
T ss_pred             CEEEEECCCCCCCCH-HHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH------HHHHHHHHHHHHCCEEEEEEC-CCH
T ss_conf             989972103455886-899999999999986799979988999899999------874899999981854998526-558


Q ss_pred             HHCC
Q ss_conf             2112
Q gi|254781047|r  217 RRKE  220 (404)
Q Consensus       217 R~~~  220 (404)
                      |...
T Consensus       320 R~~k  323 (330)
T PRK06835        320 RIKK  323 (330)
T ss_pred             HHHH
T ss_conf             9999


No 19 
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=98.82  E-value=7.8e-08  Score=69.78  Aligned_cols=126  Identities=13%  Similarity=0.147  Sum_probs=78.9

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHH---HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE
Q ss_conf             864998888877289999999985781114688---89999999999999971311224665578078999999613879
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRL---HFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRV  142 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~---HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~l  142 (404)
                      .+.|.++|++|+|||+|+-.+-..+- .+..++   ...+++.++..    .+.         .+.....-+. ..+++|
T Consensus        47 ~~Nlll~G~~GtGKThLA~Ai~~~~~-~~g~~v~f~~~~~L~~~l~~----~~~---------~~~~~~~l~~-~~~~dl  111 (178)
T pfam01695        47 AENLLLLGPPGVGKTHLACALGHQAC-RAGYSVLFTRTPDLVEQLKR----ARG---------DGRLARTLQR-LAKADL  111 (178)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEEEECHHHHHHHHH----HHH---------CCCHHHHHHH-HHCCCE
T ss_conf             87689989999878999999999999-86985999961679999998----752---------6749999999-625897


Q ss_pred             EEEEEEEECCCH--HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEE
Q ss_conf             998423204713--58889999999985496899817868677523874056689899999850508
Q gi|254781047|r  143 LCFDEFMITNIA--DAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEI  207 (404)
Q Consensus       143 LCfDEF~V~Dia--DAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V  207 (404)
                      |.+|||-...+.  .+.+|-.++..-.++ -.+|+|||.+|++.+.===.+..=-..++-|-.+|.+
T Consensus       112 LIiDDlG~~~~s~~~~~~lf~li~~Rye~-~stIiTSN~~~~~W~~~~~d~~~a~AilDRlvh~~~~  177 (178)
T pfam01695       112 LILDDIGYLPLSQEAAHLLFELISDRYER-RSTILTSNLPFGEWHEVFGDPTLATAILDRLLHHAHV  177 (178)
T ss_pred             EEEEHHCCCCCCHHHHHHHHHHHHHHHCC-CCEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHCEEE
T ss_conf             88720016568989999999999999756-8868776899789987648768999999987015065


No 20 
>PRK08903 hypothetical protein; Validated
Probab=98.81  E-value=1.6e-08  Score=74.24  Aligned_cols=92  Identities=23%  Similarity=0.340  Sum_probs=62.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf             49988888772899999999857811146888999999999999997131122466557807899999961387999842
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDE  147 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDE  147 (404)
                      -+||||+.|.|||+|+....+...... ++..|-.-                     .. +..  ..+....+++||+|.
T Consensus        44 ~l~i~G~~G~GKTHLl~a~~~~~~~~~-~~~~yl~~---------------------~~-~~~--~~~~~~~~d~l~iDD   98 (227)
T PRK08903         44 FFYLWGEAGSGRSHLLQALVAAASEGG-KNARYLDP---------------------AS-PLL--AFDFDPRAELYAVDD   98 (227)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEECC---------------------CC-CHH--HHHHHHCCCEEEEEC
T ss_conf             699989999988899999999998069-97499651---------------------10-457--774200189899964


Q ss_pred             EEECCCHHHHHHHHHHHHHHHCC-CEEEEECCCCHHHH
Q ss_conf             32047135888999999998549-68998178686775
Q gi|254781047|r  148 FMITNIADAIILSRLFAALFSHG-CIIVMTSNFIPENL  184 (404)
Q Consensus       148 F~V~DiaDAmil~rl~~~lf~~g-v~lV~TSN~~P~dL  184 (404)
                      +|.-+-..-.-+=.++..+...| .+|++||+.+|..|
T Consensus        99 i~~i~~~~q~~lF~l~N~~~~~~~~~ll~s~~~~p~~l  136 (227)
T PRK08903         99 VERLDDAQQIALFNLFNRVRAHGKTALLVAGPAAPLAL  136 (227)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHC
T ss_conf             11489569999999999999729948997189971201


No 21 
>PRK12377 putative replication protein; Provisional
Probab=98.78  E-value=5.8e-07  Score=64.24  Aligned_cols=139  Identities=13%  Similarity=0.141  Sum_probs=87.3

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf             88649988888772899999999857811146888999999999999997131122466557807899999961387999
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC  144 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC  144 (404)
                      ...++-+.|++|+|||+|--..-..+-.. -+++-|..- .++-.+|+......        .-...+.+.+ .+++||-
T Consensus       100 ~~~NlIf~G~pGtGKTHLA~AIg~~a~~~-G~sVlF~t~-~dLv~~L~~a~~~g--------~~~~k~l~~l-~~~dLLI  168 (248)
T PRK12377        100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK-GRSVIVVTV-PDVMSRLHESYDNG--------QSGEKFLQEL-CKVDLLV  168 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEEH-HHHHHHHHHHHHCC--------CCHHHHHHHH-HCCCEEE
T ss_conf             88608998999987889999999999987-996999889-99999999999848--------5099999997-3389898


Q ss_pred             EEEEEEC--CCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHH-HCCEEEECCCCCHHHHCC
Q ss_conf             8423204--713588899999999854968998178686775238740566898999998-505089804731122112
Q gi|254781047|r  145 FDEFMIT--NIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLE-KKLEIISLDSGQDYRRKE  220 (404)
Q Consensus       145 fDEF~V~--DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk-~~~~V~~l~~~~DYR~~~  220 (404)
                      +||+=+.  +-..+.+|-.++..=....-.+|+|||-++.++..  +--+   ..++-|. .++.+++++ |..||++-
T Consensus       169 IDElG~~~~s~~~~~llfqlI~~Ry~~~ks~IiTTNL~f~ew~~--ilgd---ailDRL~~h~~~~i~f~-GeSYRk~i  241 (248)
T PRK12377        169 LDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMST--LLGE---RVMDRMTMNGGRWVNFN-WESWRPNV  241 (248)
T ss_pred             EHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH--HHHH---HHHHHHHHCCCEEEEEE-CCCCCCCC
T ss_conf             60005788986799999999999985579868975899779988--8759---99999986693499861-73111357


No 22 
>PRK08727 hypothetical protein; Validated
Probab=98.72  E-value=1.2e-07  Score=68.59  Aligned_cols=97  Identities=18%  Similarity=0.251  Sum_probs=64.7

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf             64998888877289999999985781114688899999999999999713112246655780789999996138799984
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFD  146 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfD  146 (404)
                      .-+||||+.|.|||+|+........... ++..|-.. ......              ..+.+     +-.....++|+|
T Consensus        42 ~~lyl~G~~GsGKTHLl~a~~~~~~~~~-~~~~yl~l-~~~~~~--------------~~~~l-----~~le~~~ll~iD  100 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALSLCAAAEQAG-RSSAYLPL-QAAAGR--------------LRDAL-----EALEGRSLVALD  100 (233)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEEH-HHHHHH--------------HHHHH-----HHHCCCCEEEEE
T ss_conf             9899989999988999999999998279-97288447-885320--------------25677-----531038978985


Q ss_pred             EEEEC--CCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf             23204--713588899999999854968998178686775
Q gi|254781047|r  147 EFMIT--NIADAIILSRLFAALFSHGCIIVMTSNFIPENL  184 (404)
Q Consensus       147 EF~V~--DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL  184 (404)
                      -.+.-  +-.+--.|=.||..+.+.|..+++||+.+|.++
T Consensus       101 Did~i~g~~~~e~aLFhL~N~~~~~~~~ll~ts~~~P~~l  140 (233)
T PRK08727        101 GVDSIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL  140 (233)
T ss_pred             CCHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
T ss_conf             5011269827999999999999861983899779895662


No 23 
>PRK06921 hypothetical protein; Provisional
Probab=98.72  E-value=2.3e-07  Score=66.83  Aligned_cols=130  Identities=14%  Similarity=0.147  Sum_probs=78.4

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             8864998888877289999999985781114---6888999999999999997131122466557807899999961387
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKK---CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR  141 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K---~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~  141 (404)
                      .-.|++++|+||+|||+|....-..+-....   .-+-|-++|.++.+-..               ..... -+..++++
T Consensus       115 ~~~~l~f~G~~G~GKThLa~aIa~~Ll~~~~~~Vly~~~~~~~~~lk~~~~---------------~~~~~-l~~~~~~d  178 (265)
T PRK06921        115 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFD---------------LLEAK-LNRMKKVE  178 (265)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHH---------------HHHHH-HHHHHCCC
T ss_conf             766279972898988999999999999962971999887999999998888---------------89999-99863299


Q ss_pred             EEEEEEE-----EECCCHHHH--HHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCE--EEECCC
Q ss_conf             9998423-----204713588--8999999998549689981786867752387405668989999985050--898047
Q gi|254781047|r  142 VLCFDEF-----MITNIADAI--ILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLE--IISLDS  212 (404)
Q Consensus       142 lLCfDEF-----~V~DiaDAm--il~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~--V~~l~~  212 (404)
                      ||-+|.+     --....+..  .+-.++..=..++..+|.|||..+++|-.  +--..    -.-|-+.|.  ++.+.|
T Consensus       179 lLIIDDLfk~~~G~e~~te~~~~~lf~iIN~Ry~~~kptIiSSNl~~~~L~~--i~e~i----~SRi~emc~~~~v~~~G  252 (265)
T PRK06921        179 VLFIDDLFKPVNGKPRATEWQIEQTYSVVNYRYLNHKPILISSELTIDELLD--IDEAL----GSRIVEMCKDYLVIING  252 (265)
T ss_pred             EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH--HHHHH----HHHHHHHCCCCEEEEEC
T ss_conf             9998221223479878988999999999999997699989986899899987--63798----88899972574899967


Q ss_pred             CCHHH
Q ss_conf             31122
Q gi|254781047|r  213 GQDYR  217 (404)
Q Consensus       213 ~~DYR  217 (404)
                       .|||
T Consensus       253 -~~~~  256 (265)
T PRK06921        253 -DSFL  256 (265)
T ss_pred             -CHHH
T ss_conf             -4113


No 24 
>PRK06893 DNA replication initiation factor; Validated
Probab=98.70  E-value=4.3e-08  Score=71.43  Aligned_cols=123  Identities=19%  Similarity=0.230  Sum_probs=69.0

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf             86499888887728999999998578111468889999999999999971311224665578078999999613879998
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCF  145 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCf  145 (404)
                      .+.+||||+.|+|||+|+....+..-...+ ...|.....     ...            -+|  .+. +=.++..++|+
T Consensus        39 ~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~-~~~yi~~~~-----~~~------------~~~--~~l-~~l~~~d~l~i   97 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQR-TAIYIPLSK-----SQY------------FSP--AVL-ENLEQQDLVCL   97 (229)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHCC-CEEEEEHHH-----HHH------------CCH--HHH-HHHHHCCEEEE
T ss_conf             987999899999889999999999997189-859997377-----564------------069--999-87654797999


Q ss_pred             EEEEEC--CCHHHHHHHHHHHHHHHCCCE-EEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHH
Q ss_conf             423204--713588899999999854968-99817868677523874056689899999850508980473112
Q gi|254781047|r  146 DEFMIT--NIADAIILSRLFAALFSHGCI-IVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDY  216 (404)
Q Consensus       146 DEF~V~--DiaDAmil~rl~~~lf~~gv~-lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DY  216 (404)
                      |-+|.-  +-.---.+=.+|..+-+.|-. +++||+.+|.+|=   ..    +|=..-=-..+.++++....|=
T Consensus        98 DDi~~i~g~~~~e~~lF~l~N~l~~~~~~~ll~ss~~~p~~l~---~~----l~DL~SRl~~~~~~~i~~~dd~  164 (229)
T PRK06893         98 DDLQAVIGNEEWELAIFDLFNRIKESGKTLLLISANQSPHALQ---IK----LPDLASRLTWGEIYQLNDLTDE  164 (229)
T ss_pred             ECHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHC---CH----HHHHHHHHHCCEEEEECCCCHH
T ss_conf             6723424883899999999999997599179985798833221---00----2679999968836996677757


No 25 
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.69  E-value=1.6e-07  Score=67.88  Aligned_cols=106  Identities=19%  Similarity=0.180  Sum_probs=55.6

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf             68864998888877289999999985781114688899999999999999713112246655780789999996138799
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL  143 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL  143 (404)
                      .+|+|+-|||++|+|||||..+.-..+...- -++---+++.       .+-|...   ..-. -+-..|++.  .--+|
T Consensus       164 ~pPkGvLLyGPPGtGKTllAkAvA~e~~~~f-i~v~~s~l~s-------k~vGese---k~vr-~lF~~Ar~~--aP~Ii  229 (390)
T PRK03992        164 EPPKGVLLYGPPGTGKTLLAKAVAHETNATF-IRVVGSELVQ-------KFIGEGA---RLVR-ELFELAREK--APSII  229 (390)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEEHHHHHH-------CCCCHHH---HHHH-HHHHHHHHH--CCCEE
T ss_conf             9997278689899978999999998748887-9966799752-------4541799---9999-999999970--99089


Q ss_pred             EEEEEEEC--------CCHHHHH---HHHHHHHHH----HCCCEEEEECCCCHHHH
Q ss_conf             98423204--------7135888---999999998----54968998178686775
Q gi|254781047|r  144 CFDEFMIT--------NIADAII---LSRLFAALF----SHGCIIVMTSNFIPENL  184 (404)
Q Consensus       144 CfDEF~V~--------DiaDAmi---l~rl~~~lf----~~gv~lV~TSN~~P~dL  184 (404)
                      ||||+..-        .-+|+.+   +..|+..+=    ..+|++|+++|++ +.|
T Consensus       230 FiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~emDG~~~~~~V~VIaATNrp-d~L  284 (390)
T PRK03992        230 FIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRP-DIL  284 (390)
T ss_pred             EHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC-HHC
T ss_conf             7143256633567788862088999999999974487777882799606981-005


No 26 
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.68  E-value=7.6e-08  Score=69.86  Aligned_cols=104  Identities=20%  Similarity=0.186  Sum_probs=64.6

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE
Q ss_conf             66886499888887728999999998578111468889999999999999971311224665578078999999613879
Q gi|254781047|r   63 YCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRV  142 (404)
Q Consensus        63 ~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~l  142 (404)
                      ..+|||+-|+|++||||||+-...-.....+= .|+-.-++|..       +-|..   +..-. -+-.+|+.++-  -+
T Consensus       256 l~~PkGvLL~GpPG~GKtl~AKAvA~e~~~p~-l~l~~~~l~~~-------~vGes---E~~~r-~~f~~A~~~aP--~i  321 (491)
T CHL00195        256 LPTPRGLLLVGIQGTGKSLTAKAIANEWNLPL-LRLDVGKLFGG-------IVGES---ESRMR-QMIQLAETISP--CI  321 (491)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEEHHHHHHH-------HCCHH---HHHHH-HHHHHHHHHCC--EE
T ss_conf             99998799979999878999999986638946-99667997560-------06704---99999-99999986198--58


Q ss_pred             EEEEEEE-E--------CCCHHHHHHHHHHHHHHHC--CCEEEEECCCC
Q ss_conf             9984232-0--------4713588899999999854--96899817868
Q gi|254781047|r  143 LCFDEFM-I--------TNIADAIILSRLFAALFSH--GCIIVMTSNFI  180 (404)
Q Consensus       143 LCfDEF~-V--------~DiaDAmil~rl~~~lf~~--gv~lV~TSN~~  180 (404)
                      |+|||+. .        ..=+...+++.++..+-++  +|++|+|.|++
T Consensus       322 lfiDEidk~~~~~~~~~d~g~s~rv~~~~Lt~m~e~~~~VfViattN~~  370 (491)
T CHL00195        322 LWIDEIDKAFSGLDSKGDSGTSNRVLATFITWLSEKKSPVFVVATANNI  370 (491)
T ss_pred             EEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf             9974654542588888887232899999999864689976999958997


No 27 
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.63  E-value=3.2e-07  Score=65.88  Aligned_cols=108  Identities=15%  Similarity=0.056  Sum_probs=64.0

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE
Q ss_conf             886499888887728999999998578111--468889999999999999971311224665578078999999613879
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEK--KCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRV  142 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~--K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~l  142 (404)
                      ++++++|||++|+|||+|...+.+.+....  -..+..++++............          ..-..-...-..+..+
T Consensus        18 ~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~v   87 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF----------LVRLLFELAEKAKPGV   87 (151)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHHHH----------HHHHHHHHHHHCCCCE
T ss_conf             998089989999886599999999712137982785477704677775760577----------8898999999769986


Q ss_pred             EEEEEEEECCCHHHHHHHHHHHHHHH-----CCCEEEEECCCCHH
Q ss_conf             99842320471358889999999985-----49689981786867
Q gi|254781047|r  143 LCFDEFMITNIADAIILSRLFAALFS-----HGCIIVMTSNFIPE  182 (404)
Q Consensus       143 LCfDEF~V~DiaDAmil~rl~~~lf~-----~gv~lV~TSN~~P~  182 (404)
                      |.+||.+--....---+.+++..+..     .++.+|+++|+++.
T Consensus        88 l~iDEi~~l~~~~~~~~~~~l~~~~~~~~~~~~~~vI~~tn~~~~  132 (151)
T cd00009          88 LFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL  132 (151)
T ss_pred             EEEECHHHCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCC
T ss_conf             982016655999999999999871575406788899995289988


No 28 
>PRK09087 hypothetical protein; Validated
Probab=98.36  E-value=3.5e-06  Score=59.30  Aligned_cols=88  Identities=22%  Similarity=0.253  Sum_probs=56.4

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf             86499888887728999999998578111468889999999999999971311224665578078999999613879998
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCF  145 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCf  145 (404)
                      .+++||||+.|+|||+|...+.+.....   .+|-..+-.                         ... . ......+|+
T Consensus        44 ~~~~~L~Gp~gsGKTHL~~~~~~~~~a~---~~~~~~~~~-------------------------~~~-~-~~~~~~~~i   93 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREKADAL---LVHPNEIGS-------------------------DAA-N-AAAERPVLI   93 (226)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCE---EECHHHCCH-------------------------HHH-H-HHCCCCEEE
T ss_conf             7758998999998869999999980996---836687474-------------------------667-6-532798899


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf             423204713588899999999854968998178686775
Q gi|254781047|r  146 DEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL  184 (404)
Q Consensus       146 DEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL  184 (404)
                      |.++...+-+.. |=.++..+-..|..|++||+.+|.++
T Consensus        94 dd~d~~~~dEe~-LFhl~N~~~~~~~~LLlts~~~p~~l  131 (226)
T PRK09087         94 EDIDAGGFDETG-LFHLINSVRQAGTSLLMTSRLWPSAW  131 (226)
T ss_pred             ECCCCCCCCHHH-HHHHHHHHHHCCCEEEEECCCCHHHC
T ss_conf             748777747899-99999999853987999889895666


No 29 
>PRK06620 hypothetical protein; Validated
Probab=98.36  E-value=3.3e-06  Score=59.45  Aligned_cols=84  Identities=15%  Similarity=0.239  Sum_probs=59.6

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf             86499888887728999999998578111468889999999999999971311224665578078999999613879998
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCF  145 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCf  145 (404)
                      .+.+||||++|+|||+|...+-+.... ..  +                            +... ...++..++..+|+
T Consensus        44 ~~~l~I~Gp~gSGKTHL~~i~~~~~~a-~~--~----------------------------~~~~-~~~~~~~~~~~~ii   91 (214)
T PRK06620         44 KFTLLIKGPSSSGKTYLTKIWQNLSNA-YI--I----------------------------KDIF-FNEEILEKYNAFII   91 (214)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCC-EE--E----------------------------CHHH-CCHHHHHHCCCEEE
T ss_conf             555999879999889999999998285-88--1----------------------------5121-45878843793798


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf             423204713588899999999854968998178686775
Q gi|254781047|r  146 DEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL  184 (404)
Q Consensus       146 DEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL  184 (404)
                      |-++  ...+..++. +|..+-..|..+++||+.+|.++
T Consensus        92 ddid--~~~e~~lfh-lfN~~~~~~~~llits~~~p~~~  127 (214)
T PRK06620         92 EDIE--NWQEPALLH-IFNIINEKQKYLLLTSSDKSRNF  127 (214)
T ss_pred             ECCC--CCCHHHHHH-HHHHHHHCCCEEEEEECCCCCCC
T ss_conf             4677--574679999-99999715987999827985224


No 30 
>KOG0733 consensus
Probab=98.27  E-value=1.4e-05  Score=55.44  Aligned_cols=140  Identities=18%  Similarity=0.231  Sum_probs=81.0

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC-E
Q ss_conf             688649988888772899999999857811146888999999999999997131122466557807899999961387-9
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR-V  142 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~-l  142 (404)
                      .||||+.|||++|||||||-+++-..+.++=- .+-=-        ++  ..|-.  ++  .+.-|..+=++-.+.+. |
T Consensus       221 ~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~-~isAp--------ei--vSGvS--GE--SEkkiRelF~~A~~~aPci  285 (802)
T KOG0733         221 RPPRGVLLHGPPGCGKTSLANAIAGELGVPFL-SISAP--------EI--VSGVS--GE--SEKKIRELFDQAKSNAPCI  285 (802)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHCCCCEE-EECCH--------HH--HCCCC--CC--CHHHHHHHHHHHHCCCCEE
T ss_conf             79975164489986478999997521288548-51414--------65--31557--52--2899999999873669759


Q ss_pred             EEEEEEEECCCH--------HHHHHHHHHHHHH--------HCCCEEEEECCCCHHHHHCCCCCH-HHHHHHH-------
Q ss_conf             998423204713--------5888999999998--------549689981786867752387405-6689899-------
Q gi|254781047|r  143 LCFDEFMITNIA--------DAIILSRLFAALF--------SHGCIIVMTSNFIPENLYKDEINR-NVLVSFI-------  198 (404)
Q Consensus       143 LCfDEF~V~Dia--------DAmil~rl~~~lf--------~~gv~lV~TSN~~P~dLY~~GLqR-~~FlPfI-------  198 (404)
                      ++|||..---..        .--|++.|+..+=        ..+|++|.+-||| |-| ..+|-| -+|---|       
T Consensus       286 vFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP-Dsl-DpaLRRaGRFdrEI~l~vP~e  363 (802)
T KOG0733         286 VFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP-DSL-DPALRRAGRFDREICLGVPSE  363 (802)
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCC-CCC-CHHHHCCCCCCCEEEECCCCH
T ss_conf             985110013644045788999999999998510025666689976998247897-655-877732565532353068966


Q ss_pred             ----HHHHHCCEEEECCCCCHHHHCC
Q ss_conf             ----9998505089804731122112
Q gi|254781047|r  199 ----ELLEKKLEIISLDSGQDYRRKE  220 (404)
Q Consensus       199 ----~~lk~~~~V~~l~~~~DYR~~~  220 (404)
                          ++|+.-|.-+.+++..||++..
T Consensus       364 ~aR~~IL~~~~~~lrl~g~~d~~qlA  389 (802)
T KOG0733         364 TAREEILRIICRGLRLSGDFDFKQLA  389 (802)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf             88999999998627778776899997


No 31 
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=98.19  E-value=2.6e-06  Score=60.10  Aligned_cols=91  Identities=21%  Similarity=0.191  Sum_probs=50.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf             49988888772899999999857811146888999999999999997131122466557807899999961387999842
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDE  147 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDE  147 (404)
                      ||.|+|++|+|||.|...+.+.+....-.++..|..|..-  .+.-...-........+-|+...    .++..+|+|||
T Consensus         1 ~vll~Gp~G~GKT~la~~la~~l~~~~~~~i~~~~~~~~~--dl~G~~~~~~~~~~~~~g~l~~a----~~~g~vl~lDE   74 (139)
T pfam07728         1 GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTEE--DLKGRRNIANGTTSWVDGPLVRA----AREGEIAVLDE   74 (139)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCHH--HCCCCEECCCCCEEEECCHHHCC----CCCCCEEEECC
T ss_conf             9899989975699999999998079831112146556522--20573423799357815514101----01286899634


Q ss_pred             EEECCCHHHHHHHHHHHHHH
Q ss_conf             32047135888999999998
Q gi|254781047|r  148 FMITNIADAIILSRLFAALF  167 (404)
Q Consensus       148 F~V~DiaDAmil~rl~~~lf  167 (404)
                      +.--+   .=++..|+..|-
T Consensus        75 in~a~---~~v~~~L~~~le   91 (139)
T pfam07728        75 INRAN---PDVLNSLLSLLD   91 (139)
T ss_pred             HHHCC---HHHHHHHHHHHC
T ss_conf             34489---999999999974


No 32 
>CHL00176 ftsH cell division protein; Validated
Probab=98.14  E-value=6.2e-05  Score=51.39  Aligned_cols=141  Identities=18%  Similarity=0.224  Sum_probs=77.3

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf             68864998888877289999999985781114688899999999999999713112246655780789999996138799
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL  143 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL  143 (404)
                      ..|||+-|+|++|+|||+|-.+.-.-+.++= -.+-=-+|+.     |..--+     .....| |-.-|++.+  --++
T Consensus       208 k~PkGvLL~GpPGTGKTlLAkAvAgEa~vpF-~~~sgs~F~e-----~~vGvg-----a~rVR~-LF~~Ar~~a--P~Ii  273 (631)
T CHL00176        208 KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF-FSISGSEFVE-----MFVGVG-----AARVRD-LFKKAKENS--PCIV  273 (631)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCCCCE-EEEEHHHHHH-----HHCCHH-----HHHHHH-HHHHHHHCC--CEEE
T ss_conf             6896589889899878899999856558846-9988378556-----421555-----899999-999998639--9699


Q ss_pred             EEEEEEECC------CH-----HHHHHHHHHHHHH----HCCCEEEEECCCC----HHHHHCCCCCHHHHH--HH----H
Q ss_conf             984232047------13-----5888999999998----5496899817868----677523874056689--89----9
Q gi|254781047|r  144 CFDEFMITN------IA-----DAIILSRLFAALF----SHGCIIVMTSNFI----PENLYKDEINRNVLV--SF----I  198 (404)
Q Consensus       144 CfDEF~V~D------ia-----DAmil~rl~~~lf----~~gv~lV~TSN~~----P~dLY~~GLqR~~Fl--Pf----I  198 (404)
                      +|||+-.--      .+     -...|..||..+=    +.||++|+..|+|    |.-|=++-+-|.-.+  |-    .
T Consensus       274 FIDEiDaig~~Rg~~~~gg~~e~e~tlnqLL~emDGf~~~~gViViaATNrpd~LDpALlRPGRFDR~I~V~lPD~~gR~  353 (631)
T CHL00176        274 FIDEIDAVGRQRGAGVGGGNDEREQTLNQLLTEMDGFEGNKGVIVIAATNRIDILDAALLRPGRFDRQVTVSLPDFEGRL  353 (631)
T ss_pred             EEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCEEEEECCCCHHHHH
T ss_conf             98710120114789888985089999999999842888788869998258855456866268877549982698989999


Q ss_pred             HHHHHCCEEEECCCCCHHHH
Q ss_conf             99985050898047311221
Q gi|254781047|r  199 ELLEKKLEIISLDSGQDYRR  218 (404)
Q Consensus       199 ~~lk~~~~V~~l~~~~DYR~  218 (404)
                      ++|+-|+.-..++.+.|+..
T Consensus       354 ~IL~vh~k~~~l~~dvdl~~  373 (631)
T CHL00176        354 DILKVHARNKKLAEDVSLEL  373 (631)
T ss_pred             HHHHHHHHCCCCCCCHHHHH
T ss_conf             99999970786665300999


No 33 
>KOG0727 consensus
Probab=98.07  E-value=4.8e-05  Score=52.11  Aligned_cols=112  Identities=21%  Similarity=0.265  Sum_probs=62.1

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC--CC
Q ss_conf             6886499888887728999999998578111468889999999999999971311224665578078999999613--87
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALE--SR  141 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~--~~  141 (404)
                      -||+|+.+||++|||||||...--++.... =-|+-=.+|.   |.-|-+           .+-...- +=.++++  -.
T Consensus       187 dpprgvllygppg~gktml~kava~~t~a~-firvvgsefv---qkylge-----------gprmvrd-vfrlakenaps  250 (408)
T KOG0727         187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAA-FIRVVGSEFV---QKYLGE-----------GPRMVRD-VFRLAKENAPS  250 (408)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHCCCHH-EEEECCHHHH---HHHHCC-----------CCHHHHH-HHHHHHCCCCC
T ss_conf             998622775799975789999986126111-4463018999---998554-----------8389999-99987616983


Q ss_pred             EEEEEEEEE--------CCCHHHHHHHHHHHHHHH--------CCCEEEEECCCC----HHHHHCCCCCHH
Q ss_conf             999842320--------471358889999999985--------496899817868----677523874056
Q gi|254781047|r  142 VLCFDEFMI--------TNIADAIILSRLFAALFS--------HGCIIVMTSNFI----PENLYKDEINRN  192 (404)
Q Consensus       142 lLCfDEF~V--------~DiaDAmil~rl~~~lf~--------~gv~lV~TSN~~----P~dLY~~GLqR~  192 (404)
                      ++++||..-        .-=||-- ..|++-.|.+        -+|.+|+..||+    |.-|-++.|-|.
T Consensus       251 iifideidaiatkrfdaqtgadre-vqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrk  320 (408)
T KOG0727         251 IIFIDEIDAIATKRFDAQTGADRE-VQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRK  320 (408)
T ss_pred             EEEEEHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCC
T ss_conf             798622456766412444463189-9999999997514767666558998327555668766287643444


No 34 
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.99  E-value=0.00016  Score=48.76  Aligned_cols=140  Identities=19%  Similarity=0.193  Sum_probs=82.7

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC--CC
Q ss_conf             6886499888887728999999998578111468889999999999999971311224665578078999999613--87
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALE--SR  141 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~--~~  141 (404)
                      .||||+.|||++|+|||||-.+.-+.....= -|+-=-+|   ||    ++-|..   .     -+-.=.=++|++  --
T Consensus       183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-IrvvgSEl---Vq----KYiGEG---a-----RlVRelF~lArekaPs  246 (406)
T COG1222         183 DPPKGVLLYGPPGTGKTLLAKAVANQTDATF-IRVVGSEL---VQ----KYIGEG---A-----RLVRELFELAREKAPS  246 (406)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHCCCCEE-EEECCHHH---HH----HHHCCC---H-----HHHHHHHHHHHHCCCE
T ss_conf             9997127668999758899999872058669-99421999---99----983411---6-----9999999987414984


Q ss_pred             EEEEEEEEE--------CCCHHHHHHHHHHHHHHH-------CCCEEEEECCCC----HHHHHCCCCCHHH------HHH
Q ss_conf             999842320--------471358889999999985-------496899817868----6775238740566------898
Q gi|254781047|r  142 VLCFDEFMI--------TNIADAIILSRLFAALFS-------HGCIIVMTSNFI----PENLYKDEINRNV------LVS  196 (404)
Q Consensus       142 lLCfDEF~V--------~DiaDAmil~rl~~~lf~-------~gv~lV~TSN~~----P~dLY~~GLqR~~------FlP  196 (404)
                      +|||||.--        .-=+|.=+=.-+++-|-+       .+|.+|+-.||+    |.-|=++-+-|--      +..
T Consensus       247 IIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~g  326 (406)
T COG1222         247 IIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEG  326 (406)
T ss_pred             EEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEECCCCCHHH
T ss_conf             99983112231111368888509999999999986058897887689985588555576650887545301168989789


Q ss_pred             HHHHHHHCCEEEECCCCCHHHHC
Q ss_conf             99999850508980473112211
Q gi|254781047|r  197 FIELLEKKLEIISLDSGQDYRRK  219 (404)
Q Consensus       197 fI~~lk~~~~V~~l~~~~DYR~~  219 (404)
                      =.++++-|+.-.+++.+.||...
T Consensus       327 R~~Il~IHtrkM~l~~dvd~e~l  349 (406)
T COG1222         327 RAEILKIHTRKMNLADDVDLELL  349 (406)
T ss_pred             HHHHHHHHHHHCCCCCCCCHHHH
T ss_conf             99999987621467667699999


No 35 
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=97.96  E-value=1e-05  Score=56.35  Aligned_cols=101  Identities=17%  Similarity=0.207  Sum_probs=49.8

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEEEE
Q ss_conf             99888887728999999998578111468889999999999999971311224665578078999999613-87999842
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALE-SRVLCFDE  147 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~-~~lLCfDE  147 (404)
                      +.|||++|+|||++-....+.+.      .||  |.....+....+.+.       ...-+..+-+..... --+|++||
T Consensus         1 iLl~GppGtGKT~~a~~la~~~~------~~~--~~v~~~~~~~~~~g~-------~~~~i~~~f~~a~~~~p~Il~iDe   65 (131)
T pfam00004         1 LLLYGPPGTGKTTLAKAVAKELG------APF--IEISGSELVSKYVGE-------SEKRLRELFEAAKKLAPCVIFIDE   65 (131)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHC------CCC--EECCCCCCCCCCCCH-------HHHHHHHHHHHHHHCCCCEEEECH
T ss_conf             98789999999999999999978------985--332420122233450-------688899999999974991898311


Q ss_pred             EEEC--C------CHHHHHHHHHHHHH---H--HCCCEEEEECCCCHHHHH
Q ss_conf             3204--7------13588899999999---8--549689981786867752
Q gi|254781047|r  148 FMIT--N------IADAIILSRLFAAL---F--SHGCIIVMTSNFIPENLY  185 (404)
Q Consensus       148 F~V~--D------iaDAmil~rl~~~l---f--~~gv~lV~TSN~~P~dLY  185 (404)
                      ++--  +      -....++..|+..+   .  ..++++|+|+|+ |+.|-
T Consensus        66 ~d~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~~I~tTN~-~~~ld  115 (131)
T pfam00004        66 IDALAGSRGSGGDSESRRVVNQLLTELDGFTSSLSKVIVIAATNR-PDKLD  115 (131)
T ss_pred             HHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCC-HHHCC
T ss_conf             677751678888875132687899998502246887699997599-04499


No 36 
>PRK04195 replication factor C large subunit; Provisional
Probab=97.89  E-value=0.00013  Score=49.36  Aligned_cols=115  Identities=18%  Similarity=0.152  Sum_probs=66.9

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH-------C
Q ss_conf             864998888877289999999985781114688899999999999999713112246655780789999996-------1
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIA-------L  138 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~-------~  138 (404)
                      .+.+-|+|++|+|||-+.-++-..+...      ..        +++.-       .....+-|..++...+       .
T Consensus        40 ~k~lLL~GPpGvGKTT~a~~lAk~~g~~------vi--------ElNAS-------D~R~~~~I~~~i~~~~~~~sl~~~   98 (403)
T PRK04195         40 KKALLLYGPPGVGKTSLAHALANDYGWE------VI--------ELNAS-------DQRTKDVIERVAGEASTSGSLFGA   98 (403)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCC------EE--------EECCC-------CCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             7469988939987999999999984998------59--------97710-------114789999999987606887788


Q ss_pred             CCCEEEEEEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCC
Q ss_conf             387999842320-4713588899999999854968998178686775238740566898999998505089804731
Q gi|254781047|r  139 ESRVLCFDEFMI-TNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQ  214 (404)
Q Consensus       139 ~~~lLCfDEF~V-~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~  214 (404)
                      ..+|+.+||..- +--+|.--+..|.+.+-+-...+|++.|-+    |..         .+..|+.+|.++.+....
T Consensus        99 ~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~s~~PiIli~Nd~----~~~---------~~~~lrs~c~~i~F~~~~  162 (403)
T PRK04195         99 KRKLILLDEVDGIHGNADRGGVRAILEIIKKAKNPIILTANDP----YDP---------SLRPLRNACLMIEFKRLS  162 (403)
T ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCC---------CHHHHHHHHHHCCCCCCC
T ss_conf             7349996343445724447999999999854887089982684----556---------717799766122179949


No 37 
>KOG0730 consensus
Probab=97.88  E-value=7.3e-05  Score=50.93  Aligned_cols=139  Identities=18%  Similarity=0.238  Sum_probs=76.5

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC-C
Q ss_conf             666886499888887728999999998578111468889999999999999971311224665578078999999613-8
Q gi|254781047|r   62 KYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALE-S  140 (404)
Q Consensus        62 ~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~-~  140 (404)
                      ...+|+|+-+||++|+|||||++.+-+-..      .|+  |-...++-+..+-+.      ..+++-..++.....+ -
T Consensus       214 g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~------a~~--~~i~~peli~k~~gE------te~~LR~~f~~a~k~~~p  279 (693)
T KOG0730         214 GIKPPRGLLLYGPPGTGKTFLVRAVANEYG------AFL--FLINGPELISKFPGE------TESNLRKAFAEALKFQVP  279 (693)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHC------CEE--EECCCHHHHHHCCCC------HHHHHHHHHHHHHCCCCC
T ss_conf             899998744438999981899999999737------225--740628999852463------177899999998665998


Q ss_pred             CEEEEEEEEECC-------CHHHHHHHHHHHHHHHC----CCEEEEECCCCHHHHHCCCCCHHHH-----H--HH----H
Q ss_conf             799984232047-------13588899999999854----9689981786867752387405668-----9--89----9
Q gi|254781047|r  141 RVLCFDEFMITN-------IADAIILSRLFAALFSH----GCIIVMTSNFIPENLYKDEINRNVL-----V--SF----I  198 (404)
Q Consensus       141 ~lLCfDEF~V~D-------iaDAmil~rl~~~lf~~----gv~lV~TSN~~P~dLY~~GLqR~~F-----l--Pf----I  198 (404)
                      -+|++||....=       ..+--+.+.|+..+...    ++++++|+|+|- -| .-++.|-+|     +  |-    .
T Consensus       280 sii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~-sl-d~alRRgRfd~ev~IgiP~~~~Rl  357 (693)
T KOG0730         280 SIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPD-SL-DPALRRGRFDREVEIGIPGSDGRL  357 (693)
T ss_pred             EEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC-CC-CHHHHCCCCCCEEEECCCCCHHHH
T ss_conf             0775876762377643332488899999999985276767469997158855-56-856524788531574489833588


Q ss_pred             HHHHHCCEEEECCCCCHH
Q ss_conf             999850508980473112
Q gi|254781047|r  199 ELLEKKLEIISLDSGQDY  216 (404)
Q Consensus       199 ~~lk~~~~V~~l~~~~DY  216 (404)
                      ++++-.+..+++.+..|.
T Consensus       358 dIl~~l~k~~~~~~~~~l  375 (693)
T KOG0730         358 DILRVLTKKMNLLSDVDL  375 (693)
T ss_pred             HHHHHHHHHCCCCCHHHH
T ss_conf             999999861688725568


No 38 
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.87  E-value=0.00013  Score=49.30  Aligned_cols=141  Identities=17%  Similarity=0.257  Sum_probs=76.6

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf             68864998888877289999999985781114688899999999999999713112246655780789999996138799
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL  143 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL  143 (404)
                      ..|||+.|+|++|+|||+|-.+.-.-+..+=- .+-=-+|+.     +  +-|   .+.....| |-.-|++.  .--++
T Consensus       183 k~PkGvLL~GPPGtGKTlLAkAvAgEa~vpF~-~~sgsef~e-----~--~vG---vga~rVR~-lF~~Ar~~--aP~II  248 (644)
T PRK10733        183 KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFF-TISGSDFVE-----M--FVG---VGASRVRD-MFEQAKKA--APCII  248 (644)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHCCCCCEEE-EEEHHHHHH-----E--EEE---CCHHHHHH-HHHHHHHC--CCEEE
T ss_conf             79985177798998778999998645598089-978477302-----2--253---06899999-99999966--99799


Q ss_pred             EEEEEEECC------CH-----HHHHHHHHHHHHH----HCCCEEEEECCCC----HHHHHCCCCCHHHHH--H----HH
Q ss_conf             984232047------13-----5888999999998----5496899817868----677523874056689--8----99
Q gi|254781047|r  144 CFDEFMITN------IA-----DAIILSRLFAALF----SHGCIIVMTSNFI----PENLYKDEINRNVLV--S----FI  198 (404)
Q Consensus       144 CfDEF~V~D------ia-----DAmil~rl~~~lf----~~gv~lV~TSN~~----P~dLY~~GLqR~~Fl--P----fI  198 (404)
                      +|||+-.--      .+     -...|..|+..+=    +.||++++..|++    |.-|=++-+-|.-.+  |    =.
T Consensus       249 FIDEiDaig~~R~~~~~gg~~e~~~tlNqlL~EmDGf~~~~~ViviaATNrpd~LD~ALlRPGRFDr~I~V~lPd~~~R~  328 (644)
T PRK10733        249 FIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGRE  328 (644)
T ss_pred             EEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCHHHHH
T ss_conf             99532203666789888983288878999999954888878769996269975547777168886559997798988999


Q ss_pred             HHHHHCCEEEECCCCCHHHH
Q ss_conf             99985050898047311221
Q gi|254781047|r  199 ELLEKKLEIISLDSGQDYRR  218 (404)
Q Consensus       199 ~~lk~~~~V~~l~~~~DYR~  218 (404)
                      ++|+-+..-..++...|+..
T Consensus       329 ~ILkvh~~~~~l~~dvdl~~  348 (644)
T PRK10733        329 QILKVHMRRVPLAPDIDAAI  348 (644)
T ss_pred             HHHHHHHCCCCCCCCCCHHH
T ss_conf             99999964887773115898


No 39 
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.84  E-value=3.6e-05  Score=52.91  Aligned_cols=106  Identities=16%  Similarity=0.230  Sum_probs=59.8

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE
Q ss_conf             66886499888887728999999998578111468889999999999999971311224665578078999999613879
Q gi|254781047|r   63 YCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRV  142 (404)
Q Consensus        63 ~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~l  142 (404)
                      ..+|+|+-|||++|+|||||-......+.      .+|..+-.-  +-+..+-+..      .++--..........--+
T Consensus       273 ~~~~~giLl~GpPGtGKT~lAkava~~~~------~~fi~v~~~--~l~sk~vGes------ek~ir~~F~~A~~~~p~i  338 (494)
T COG0464         273 LRPPKGVLLYGPPGTGKTLLAKAVALESR------SRFISVKGS--ELLSKWVGES------EKNIRELFEKARKLAPSI  338 (494)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHCC------CCEEEECCH--HHHHHHHHHH------HHHHHHHHHHHHHCCCCE
T ss_conf             98883699988999758999999875449------824884335--5540776599------999999999999669988


Q ss_pred             EEEEEEEE-----C-CCH--HHHHHHHHHHHHH----HCCCEEEEECCCCHH
Q ss_conf             99842320-----4-713--5888999999998----549689981786867
Q gi|254781047|r  143 LCFDEFMI-----T-NIA--DAIILSRLFAALF----SHGCIIVMTSNFIPE  182 (404)
Q Consensus       143 LCfDEF~V-----~-Dia--DAmil~rl~~~lf----~~gv~lV~TSN~~P~  182 (404)
                      |+|||+.-     . +..  ...+++.|+..+-    ..+|++|+++|++-.
T Consensus       339 ifiDEiDs~~~~r~~~~~~~~~rv~~~ll~~~d~~e~~~~v~vi~aTN~p~~  390 (494)
T COG0464         339 IFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDD  390 (494)
T ss_pred             EEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
T ss_conf             9748866674128998763799999999999747544376489964798332


No 40 
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.79  E-value=0.00013  Score=49.32  Aligned_cols=113  Identities=12%  Similarity=0.134  Sum_probs=61.1

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCH-HHH-H--------HHHHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHH
Q ss_conf             886499888887728999999998578111-468-8--------899999999999999713112-24665578078999
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEK-KCR-L--------HFYEFMKDVHSRIIMYRKKIE-FGEILESDPIPLVA  133 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~-K~R-~--------HFh~FM~~ih~~l~~~~~~~~-~~~~~~~dpl~~va  133 (404)
                      .|..+||||++|+|||..+..+.+.+.... +-+ +        .-+.-..+|...|   .+... ..+.....-+..+.
T Consensus        54 ~~~n~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc~~~~t~~~i~~~i~~~L---~~~~~p~~G~s~~~~~~~l~  130 (394)
T PRK00411         54 RPSNVLILGPPGTGKTTTVKKVFEELEEAALKVVYVYINCQIDRTRYAILSEIARSL---FGHPPPSSGLSFDELFDKIA  130 (394)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH---CCCCCCCCCCCHHHHHHHHH
T ss_conf             998479988999989999999999999746896599996966898999999999995---69989877878999999999


Q ss_pred             HHHHCCC--CEEEEEEEEE-CCCHHHHHHHHHHHH---HHHCCCEEEEECCCC
Q ss_conf             9996138--7999842320-471358889999999---985496899817868
Q gi|254781047|r  134 SSIALES--RVLCFDEFMI-TNIADAIILSRLFAA---LFSHGCIIVMTSNFI  180 (404)
Q Consensus       134 ~~l~~~~--~lLCfDEF~V-~DiaDAmil~rl~~~---lf~~gv~lV~TSN~~  180 (404)
                      +.+.+..  -|+++||+.- ..-.+.=+|-.||..   +-.-++.+|+=||..
T Consensus       131 ~~l~~~~~~~ivvLDEiD~L~~~~~~~vLY~L~r~~~~~~~~~~~vI~IsN~~  183 (394)
T PRK00411        131 EYLDERDRVLIVALDDINYLVEKEGNDVLYSLLRAHEEYPGARIGVIGISSDL  183 (394)
T ss_pred             HHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEEECCC
T ss_conf             98616697589999655402036650899999854022688738999997687


No 41 
>KOG0730 consensus
Probab=97.73  E-value=0.00011  Score=49.74  Aligned_cols=99  Identities=20%  Similarity=0.274  Sum_probs=53.7

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH---HHHH
Q ss_conf             6688649988888772899999999857811---146888999999999999997131122466557807899---9999
Q gi|254781047|r   63 YCSMQGIYLHGDVGQGKSMLMNLFFALVPIE---KKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLV---ASSI  136 (404)
Q Consensus        63 ~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~---~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~v---a~~l  136 (404)
                      ..+||||.+||++|||||++-..+-+.+...   -|--        ++   +..|-|..       +.-|-.+   |++.
T Consensus       465 i~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgp--------EL---~sk~vGeS-------Er~ir~iF~kAR~~  526 (693)
T KOG0730         465 ISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGP--------EL---FSKYVGES-------ERAIREVFRKARQV  526 (693)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCH--------HH---HHHHCCCH-------HHHHHHHHHHHHHC
T ss_conf             78875477778998624789999864635872641578--------99---87751825-------89999999998626


Q ss_pred             HCCCCEEEEEEEEECCCH--------HHHHHHHHHHHH----HHCCCEEEEECCCCH
Q ss_conf             613879998423204713--------588899999999----854968998178686
Q gi|254781047|r  137 ALESRVLCFDEFMITNIA--------DAIILSRLFAAL----FSHGCIIVMTSNFIP  181 (404)
Q Consensus       137 ~~~~~lLCfDEF~V~Dia--------DAmil~rl~~~l----f~~gv~lV~TSN~~P  181 (404)
                      +-  -+|+|||....-.+        .--+|..|+..+    -.++|++|+--|||-
T Consensus       527 aP--~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd  581 (693)
T KOG0730         527 AP--CIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPD  581 (693)
T ss_pred             CC--EEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHH
T ss_conf             98--37744666666630478755148999999998700410147089995058810


No 42 
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=97.71  E-value=1e-05  Score=56.38  Aligned_cols=92  Identities=22%  Similarity=0.210  Sum_probs=52.8

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC----C-CCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf             99888887728999999998578111468889999999999999971311----2-246655780789999996138799
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKI----E-FGEILESDPIPLVASSIALESRVL  143 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~----~-~~~~~~~dpl~~va~~l~~~~~lL  143 (404)
                      |+|||++|+|||.|.-.+-+.+..+ -.|+.++.-|..  ..   +.+..    . ..-...+-|+.         ..++
T Consensus         2 VLL~GppG~GKT~l~~~lA~~~~~~-~~~i~~~~~~~~--~D---l~G~~~~~~~~~~~~~~~G~l~---------~~vl   66 (131)
T pfam07726         2 VLLEGVPGLAKTLLARTLARSLGLD-FRRIQFTPDLLP--SD---ITGTEVYDQKTREFEFRPGPIF---------ANVL   66 (131)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHCCC-CEEEEECCCCCC--CC---CCCCEEECCCCCEEEEECCCCC---------CCCE
T ss_conf             8789899876999999999995998-168883377670--00---3684542378740898457310---------3705


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHCC-------------CEEEEECC
Q ss_conf             984232047135888999999998549-------------68998178
Q gi|254781047|r  144 CFDEFMITNIADAIILSRLFAALFSHG-------------CIIVMTSN  178 (404)
Q Consensus       144 CfDEF~V~DiaDAmil~rl~~~lf~~g-------------v~lV~TSN  178 (404)
                      ++||+--   |..-++..|++.+-++-             ..+|||+|
T Consensus        67 ~lDEin~---a~~~v~~~Ll~~l~er~v~~~g~~~~~p~~f~viAt~N  111 (131)
T pfam07726        67 LADEINR---APPKTQSALLEAMQERQVTIGGETHPLPEPFFVLATQN  111 (131)
T ss_pred             EEEHHHC---CCHHHHHHHHHHHHCEEEEECCEEEECCCCEEEEECCC
T ss_conf             6401203---99899999997632649977998852799849997169


No 43 
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.67  E-value=0.0019  Score=42.00  Aligned_cols=126  Identities=16%  Similarity=0.315  Sum_probs=67.2

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHC-----CCC-HHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             649988888772899999999857-----811-14688899999999999999--7131122466557807899999961
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALV-----PIE-KKCRLHFYEFMKDVHSRIIM--YRKKIEFGEILESDPIPLVASSIAL  138 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l-----~~~-~K~R~HFh~FM~~ih~~l~~--~~~~~~~~~~~~~dpl~~va~~l~~  138 (404)
                      +-.-|-|++|+|||-+..-+-..+     |.. +.+|+    |.+++-.-+.-  +||.       -+.-+..|.+++.+
T Consensus       208 NNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i----~~Ldl~~LiAGtkyRGe-------fEeRlk~vi~e~~~  276 (758)
T PRK11034        208 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTI----YSLDIGSLLAGTKYRGD-------FEKRFKALLKQLEQ  276 (758)
T ss_pred             CCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEE----EEEEHHHHHCCCCCCHH-------HHHHHHHHHHHHHH
T ss_conf             89602169998699999999999973899765589889----98458778616864154-------99999999999985


Q ss_pred             CC-CEEEEEEEEEC-CC----HHHHHHHHHHHHHHHCC-CEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf             38-79998423204-71----35888999999998549-68998178686775238740566898999998505089804
Q gi|254781047|r  139 ES-RVLCFDEFMIT-NI----ADAIILSRLFAALFSHG-CIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD  211 (404)
Q Consensus       139 ~~-~lLCfDEF~V~-Di----aDAmil~rl~~~lf~~g-v~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~  211 (404)
                      .. -+||+||.|.- .-    +..|=.+.+++-...+| +.+|.+. +. ++ |+.=+.+|.      .|.++|+.+.++
T Consensus       277 ~~~~ILFIDEiH~ivGaG~~~gg~~DaaNlLKP~LarG~l~~IgaT-T~-~E-Yrk~iekD~------AL~RRFq~V~V~  347 (758)
T PRK11034        277 DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGST-TY-QE-FSNIFEKDR------ALARRFQKIDIT  347 (758)
T ss_pred             CCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC-CH-HH-HHHCCCCCH------HHHHCCCEEECC
T ss_conf             7985999804344226887677764678874578746972399943-77-99-875032147------888428265318


Q ss_pred             C
Q ss_conf             7
Q gi|254781047|r  212 S  212 (404)
Q Consensus       212 ~  212 (404)
                      .
T Consensus       348 E  348 (758)
T PRK11034        348 E  348 (758)
T ss_pred             C
T ss_conf             9


No 44 
>KOG0735 consensus
Probab=97.67  E-value=0.00068  Score=44.77  Aligned_cols=27  Identities=30%  Similarity=0.358  Sum_probs=18.2

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             886499888887728999999998578
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      .+.|+.|||++|||||+|....-.+.+
T Consensus       700 ~~~giLLyGppGcGKT~la~a~a~~~~  726 (952)
T KOG0735         700 LRTGILLYGPPGCGKTLLASAIASNSN  726 (952)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             655458877999857888888885378


No 45 
>KOG0733 consensus
Probab=97.63  E-value=4.4e-05  Score=52.34  Aligned_cols=139  Identities=19%  Similarity=0.252  Sum_probs=76.9

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH-HHHHCCCCE
Q ss_conf             6886499888887728999999998578111468889999999999999971311224665578078999-999613879
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVA-SSIALESRV  142 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va-~~l~~~~~l  142 (404)
                      ..|.|+.|||++|||||+|-.+--+-..      ..|..-  .=-..|+.+-|..       +-.+..|= +.=+..--|
T Consensus       543 ~~PsGvLL~GPPGCGKTLlAKAVANEag------~NFisV--KGPELlNkYVGES-------ErAVR~vFqRAR~saPCV  607 (802)
T KOG0733         543 DAPSGVLLCGPPGCGKTLLAKAVANEAG------ANFISV--KGPELLNKYVGES-------ERAVRQVFQRARASAPCV  607 (802)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHCC------CCEEEE--CCHHHHHHHHHHH-------HHHHHHHHHHHHCCCCEE
T ss_conf             8987238757998618899999850304------754762--3889998774237-------899999999862389838


Q ss_pred             EEEEEEEE--C------CCHHHHHHHHHHHHHH----HCCCEEEEECCCC----HHHHHCCCCCHHHHHHH------HHH
Q ss_conf             99842320--4------7135888999999998----5496899817868----67752387405668989------999
Q gi|254781047|r  143 LCFDEFMI--T------NIADAIILSRLFAALF----SHGCIIVMTSNFI----PENLYKDEINRNVLVSF------IEL  200 (404)
Q Consensus       143 LCfDEF~V--~------DiaDAmil~rl~~~lf----~~gv~lV~TSN~~----P~dLY~~GLqR~~FlPf------I~~  200 (404)
                      |||||+.-  .      -=+.+-++..|+..|=    .+||.+|+--|||    |.-|-++-|-+-+|.++      .++
T Consensus       608 IFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~I  687 (802)
T KOG0733         608 IFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAI  687 (802)
T ss_pred             EEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECCCCHHHHHHH
T ss_conf             98511120276557777505899999999873162111425999506897655565518775574245069987889999


Q ss_pred             HHHCCE--EEECCCCCHHH
Q ss_conf             985050--89804731122
Q gi|254781047|r  201 LEKKLE--IISLDSGQDYR  217 (404)
Q Consensus       201 lk~~~~--V~~l~~~~DYR  217 (404)
                      ||....  -..|++.+|.-
T Consensus       688 LK~~tkn~k~pl~~dVdl~  706 (802)
T KOG0733         688 LKTITKNTKPPLSSDVDLD  706 (802)
T ss_pred             HHHHHCCCCCCCCCCCCHH
T ss_conf             9998535799887545899


No 46 
>KOG0651 consensus
Probab=97.62  E-value=0.00089  Score=44.04  Aligned_cols=124  Identities=20%  Similarity=0.267  Sum_probs=71.5

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCH-H--------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf             66886499888887728999999998578111-4--------68889999999999999971311224665578078999
Q gi|254781047|r   63 YCSMQGIYLHGDVGQGKSMLMNLFFALVPIEK-K--------CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVA  133 (404)
Q Consensus        63 ~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~-K--------~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va  133 (404)
                      -.+|+|+-||||+|+|||++--+.+....+.- |        ++++=-.  .-|.++...                   |
T Consensus       163 Ik~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsa--RlIRemf~y-------------------A  221 (388)
T KOG0651         163 IKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESA--RLIRDMFRY-------------------A  221 (388)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCHH--HHHHHHHHH-------------------H
T ss_conf             7788256876799986459999999865985477447666330026578--899999977-------------------8


Q ss_pred             HHHHCCCCEEEEEEEE--------ECCCHHHHHHHHHHHHHHH-------CCCEEEEECCCCHHHHHC-----CCCCHHH
Q ss_conf             9996138799984232--------0471358889999999985-------496899817868677523-----8740566
Q gi|254781047|r  134 SSIALESRVLCFDEFM--------ITNIADAIILSRLFAALFS-------HGCIIVMTSNFIPENLYK-----DEINRNV  193 (404)
Q Consensus       134 ~~l~~~~~lLCfDEF~--------V~DiaDAmil~rl~~~lf~-------~gv~lV~TSN~~P~dLY~-----~GLqR~~  193 (404)
                      ++...  -+|++||..        =--.+|-||-+.|++-|-+       ..|.+|+|-|+ |+-||+     +-|-|--
T Consensus       222 ~~~~p--ciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNr-pdtLdpaLlRpGRldrk~  298 (388)
T KOG0651         222 REVIP--CIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNR-PDTLDPALLRPGRLDRKV  298 (388)
T ss_pred             HHHCC--EEEEEHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCEEEECCC-CCCCCHHHCCCCCCCCEE
T ss_conf             65275--577510123114577335552059999999999874214012066317985388-665665542875211100


Q ss_pred             HHHHHHHHHHCCEEEECC
Q ss_conf             898999998505089804
Q gi|254781047|r  194 LVSFIELLEKKLEIISLD  211 (404)
Q Consensus       194 FlPfI~~lk~~~~V~~l~  211 (404)
                      -+| +.-...+++|..+-
T Consensus       299 ~iP-lpne~~r~~I~Kih  315 (388)
T KOG0651         299 EIP-LPNEQARLGILKIH  315 (388)
T ss_pred             CCC-CCCHHHCEEEEEEC
T ss_conf             268-85544240267623


No 47 
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.59  E-value=7.2e-05  Score=50.97  Aligned_cols=102  Identities=18%  Similarity=0.120  Sum_probs=67.8

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--HH-HHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf             64998888877289999999985781114688899999999999--99-9713112246655780789999996138799
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSR--II-MYRKKIEFGEILESDPIPLVASSIALESRVL  143 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~--l~-~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL  143 (404)
                      +-+-|.|.+|+|||+|-..+-..+.. .-.|++|+.+|.--+--  .. ..+..........+.|+..-..      .++
T Consensus        44 ~~vll~G~PG~gKT~la~~lA~~l~~-~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~------~il  116 (329)
T COG0714          44 GHVLLEGPPGVGKTLLARALARALGL-PFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR------VIL  116 (329)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCC-CCEEEECCCCCCHHHHCCHHHHHHHHCCCCEEEEECCCCCCCCC------EEE
T ss_conf             97787798987779999999998389-81899568998888820568887664257718984687334513------389


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHH--------------CCCEEEEECC
Q ss_conf             9842320471358889999999985--------------4968998178
Q gi|254781047|r  144 CFDEFMITNIADAIILSRLFAALFS--------------HGCIIVMTSN  178 (404)
Q Consensus       144 CfDEF~V~DiaDAmil~rl~~~lf~--------------~gv~lV~TSN  178 (404)
                      ++||.-   -|+.++..-|++.|-+              .+..+++|+|
T Consensus       117 l~DEIn---ra~p~~q~aLl~~l~e~~vt~~~~~~~~~~~~f~viaT~N  162 (329)
T COG0714         117 LLDEIN---RAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQN  162 (329)
T ss_pred             EEECCC---CCCHHHHHHHHHHHHHCEEEECCCCCCCCCCCCEEEEECC
T ss_conf             987034---5898899999999972689707966533799878998268


No 48 
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.57  E-value=0.00025  Score=47.57  Aligned_cols=113  Identities=15%  Similarity=0.011  Sum_probs=58.1

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCHHHHHHHHHHCCC--C
Q ss_conf             8649988888772899999999857811146888999999999999997--13112246655780789999996138--7
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMY--RKKIEFGEILESDPIPLVASSIALES--R  141 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~--~~~~~~~~~~~~dpl~~va~~l~~~~--~  141 (404)
                      ++.++|+|++|+|||.++..+-..+.... ..+.+..=-..........  ..................+.+.+++.  .
T Consensus         2 ~~~ill~G~~GsGKTtl~~~la~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD   80 (148)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHCCCC-CCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             97899999997029999999998726689-96899875998988898765300011221051999999999999844998


Q ss_pred             EEEEEEEEECCCHHHHHHHHH-------HHHHHHCCCEEEEECCC
Q ss_conf             999842320471358889999-------99998549689981786
Q gi|254781047|r  142 VLCFDEFMITNIADAIILSRL-------FAALFSHGCIIVMTSNF  179 (404)
Q Consensus       142 lLCfDEF~V~DiaDAmil~rl-------~~~lf~~gv~lV~TSN~  179 (404)
                      +|++||.+-..-.....+...       ....-..+..+|+|+|.
T Consensus        81 viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~n~  125 (148)
T smart00382       81 VLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             EEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
T ss_conf             999827502147620799999999998517657899899995699


No 49 
>KOG0736 consensus
Probab=97.55  E-value=0.0018  Score=42.10  Aligned_cols=184  Identities=18%  Similarity=0.243  Sum_probs=93.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf             49988888772899999999857811146888999999999999997131122466557807899999961387999842
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDE  147 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDE  147 (404)
                      ||.|||++|+|||+|-.+--.-+...      |-.  ..=-+.|+.+-|+.      .+|-=+...+.=...-=||+|||
T Consensus       707 GILLYGPPGTGKTLlAKAVATEcsL~------FlS--VKGPELLNMYVGqS------E~NVR~VFerAR~A~PCVIFFDE  772 (953)
T KOG0736         707 GILLYGPPGTGKTLLAKAVATECSLN------FLS--VKGPELLNMYVGQS------EENVREVFERARSAAPCVIFFDE  772 (953)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCEEE------EEE--ECCHHHHHHHHCCH------HHHHHHHHHHHHCCCCEEEEECC
T ss_conf             05887799985579999987543036------785--05889988774301------88899999985446974998312


Q ss_pred             EEEC--------CCHHHH--HHHHHHHHH------HHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf             3204--------713588--899999999------854968998178686775238740566898999998505089804
Q gi|254781047|r  148 FMIT--------NIADAI--ILSRLFAAL------FSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD  211 (404)
Q Consensus       148 F~V~--------DiaDAm--il~rl~~~l------f~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~  211 (404)
                      ..=-        |=+--|  +.+.|+-.|      -.++|++|.-+|||  ||...-|=|.                   
T Consensus       773 LDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRP--DLLDpALLRP-------------------  831 (953)
T KOG0736         773 LDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRP--DLLDPALLRP-------------------  831 (953)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC--CCCCHHHCCC-------------------
T ss_conf             1232756788788654089999999998626667888865998258885--5457655388-------------------


Q ss_pred             CCCHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCHHHHHHHHCCHHH
Q ss_conf             73112211236783022035302268999999986044446776327636808996122021111019998521024689
Q gi|254781047|r  212 SGQDYRRKEQSILPIYMTPLNSYNRVLMDKLWAHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSAND  291 (404)
Q Consensus       212 ~~~DYR~~~~~~~~~y~~p~~~~~~~~l~~~f~~l~~~~~~~~~~i~v~~gR~i~v~~~~~~va~f~F~eLC~~~lg~~D  291 (404)
                               .--.+..+...++....+. +....++..               +..   ..+|-...-.+.|...++-+|
T Consensus       832 ---------GRFDKLvyvG~~~d~esk~-~vL~AlTrk---------------FkL---dedVdL~eiAk~cp~~~TGAD  883 (953)
T KOG0736         832 ---------GRFDKLVYVGPNEDAESKL-RVLEALTRK---------------FKL---DEDVDLVEIAKKCPPNMTGAD  883 (953)
T ss_pred             ---------CCCCEEEEECCCCCHHHHH-HHHHHHHHH---------------CCC---CCCCCHHHHHHHCCCCCCHHH
T ss_conf             ---------7655248855885678899-999998877---------------028---787679999963896775247


Q ss_pred             HHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             9999853788998189878724638999899999998
Q gi|254781047|r  292 FVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVF  328 (404)
Q Consensus       292 Yi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~l  328 (404)
                      .-+||.              +...++++|=|.-||..
T Consensus       884 lYsLCS--------------dA~l~AikR~i~~ie~g  906 (953)
T KOG0736         884 LYSLCS--------------DAMLAAIKRTIHDIESG  906 (953)
T ss_pred             HHHHHH--------------HHHHHHHHHHHHHHHHC
T ss_conf             999988--------------99999999997776505


No 50 
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937    Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12).     Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , .   More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=97.53  E-value=5.4e-05  Score=51.77  Aligned_cols=138  Identities=20%  Similarity=0.250  Sum_probs=74.3

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCHHHHHHHHHHCCC--
Q ss_conf             6886499888887728999999998578111468889999999999999-9713112246655780789999996138--
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRII-MYRKKIEFGEILESDPIPLVASSIALES--  140 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~-~~~~~~~~~~~~~~dpl~~va~~l~~~~--  140 (404)
                      .||||+.|||++|+|||+|-.+.-+...-.= -|+        |-+++- ++-|.   +.     -|-.=.=+||++-  
T Consensus       154 ~PPKGvLLyGPPGtGKTLlAKAvA~et~ATF-Irv--------VgSElV~KyIGE---GA-----rLV~~~F~LAkEKaP  216 (364)
T TIGR01242       154 EPPKGVLLYGPPGTGKTLLAKAVAHETNATF-IRV--------VGSELVRKYIGE---GA-----RLVREVFELAKEKAP  216 (364)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHCCCCCEE-EEE--------EHHHHHHHHHCC---HH-----HHHHHHHHHHHCCCC
T ss_conf             9898657007579768899998631455126-886--------044444444133---16-----899999998530698


Q ss_pred             CEEEEEEEEE--------CCCHHHHHHHHHHHHHHH-------CCCEEEEECCCC----HHHHHCCCCCH------HHHH
Q ss_conf             7999842320--------471358889999999985-------496899817868----67752387405------6689
Q gi|254781047|r  141 RVLCFDEFMI--------TNIADAIILSRLFAALFS-------HGCIIVMTSNFI----PENLYKDEINR------NVLV  195 (404)
Q Consensus       141 ~lLCfDEF~V--------~DiaDAmil~rl~~~lf~-------~gv~lV~TSN~~----P~dLY~~GLqR------~~Fl  195 (404)
                      .+||+||..-        .-=+|==+=..|++-|-+       -+|.+|+..||+    |.=|=+|-.-|      ..|-
T Consensus       217 sIiFIDEiDAiaakR~~~~TsGdREV~RTlmQLLAElDGFd~rg~VkviaATNR~DilDPA~LRPGRFDR~IEVPlP~~~  296 (364)
T TIGR01242       217 SIIFIDEIDAIAAKRVDSSTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPAILRPGRFDRIIEVPLPDFE  296 (364)
T ss_pred             CEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHCCCCCCCCCCCCCEEECCCCCCC
T ss_conf             16861013335432114677873157889999997524888767616887207620204321488861325731697832


Q ss_pred             HHHHHHHHCCEEEECCCCCHHHH
Q ss_conf             89999985050898047311221
Q gi|254781047|r  196 SFIELLEKKLEIISLDSGQDYRR  218 (404)
Q Consensus       196 PfI~~lk~~~~V~~l~~~~DYR~  218 (404)
                      -=+++|+=|..-..|....|.+.
T Consensus       297 GR~eIlkiHTr~~~la~dVdl~~  319 (364)
T TIGR01242       297 GRLEILKIHTRKMKLAEDVDLEA  319 (364)
T ss_pred             CHHHHHHHHHCCCCCCCCCCHHH
T ss_conf             20566555210000123568799


No 51 
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.49  E-value=0.0011  Score=43.39  Aligned_cols=122  Identities=25%  Similarity=0.297  Sum_probs=70.2

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCH---H----HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             886499888887728999999998578111---4----688899999999999999713112246655780789999996
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEK---K----CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIA  137 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~---K----~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~  137 (404)
                      .||.+.-||++|+||||+-...-.-+..+-   |    ---|--+=-..||+....+++..                   
T Consensus       150 APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~a-------------------  210 (368)
T COG1223         150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAA-------------------  210 (368)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------------
T ss_conf             7541687789996487999987254578548711688888774359899999999887519-------------------


Q ss_pred             CCCCEEEEEEEEECCCHHHHHHHHHHHHH-------------------HHCCCEEEEECCCCHHHHHCCCCCHHHHHHHH
Q ss_conf             13879998423204713588899999999-------------------85496899817868677523874056689899
Q gi|254781047|r  138 LESRVLCFDEFMITNIADAIILSRLFAAL-------------------FSHGCIIVMTSNFIPENLYKDEINRNVLVSFI  198 (404)
Q Consensus       138 ~~~~lLCfDEF~V~DiaDAmil~rl~~~l-------------------f~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI  198 (404)
                        --++++||+      ||.-|.|=++.|                   -+.||+.|+..|++ +-|  +.--|.+|.--|
T Consensus       211 --PcivFiDE~------DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p-~~L--D~aiRsRFEeEI  279 (368)
T COG1223         211 --PCIVFIDEL------DAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRP-ELL--DPAIRSRFEEEI  279 (368)
T ss_pred             --CEEEEEHHH------HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCH-HHC--CHHHHHHHHHEE
T ss_conf             --849984002------455530457886454999999999850174457756999505984-650--788886556506


Q ss_pred             -----------HHHHHCCEEEECCCCCHH
Q ss_conf             -----------999850508980473112
Q gi|254781047|r  199 -----------ELLEKKLEIISLDSGQDY  216 (404)
Q Consensus       199 -----------~~lk~~~~V~~l~~~~DY  216 (404)
                                 .+++.+..-+.|.-..|.
T Consensus       280 EF~LP~~eEr~~ile~y~k~~Plpv~~~~  308 (368)
T COG1223         280 EFKLPNDEERLEILEYYAKKFPLPVDADL  308 (368)
T ss_pred             EEECCCHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf             56488858999999998985897655689


No 52 
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.45  E-value=0.0019  Score=41.96  Aligned_cols=126  Identities=17%  Similarity=0.270  Sum_probs=69.0

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCC---CH---HHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             64998888877289999999985781---11---4688899999999999999--7131122466557807899999961
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPI---EK---KCRLHFYEFMKDVHSRIIM--YRKKIEFGEILESDPIPLVASSIAL  138 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~---~~---K~R~HFh~FM~~ih~~l~~--~~~~~~~~~~~~~dpl~~va~~l~~  138 (404)
                      +..-|-|++|+|||-+..-+-..+-.   +.   -+|+    |.+++-..+.-  +||.       -+.-|..|.+++.+
T Consensus       200 NNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~I----~~LDlg~L~AGakyRGe-------FEeRLk~il~ev~~  268 (857)
T PRK10865        200 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV----LALDMGALVAGAKYRGE-------FEERLKGVLNDLAK  268 (857)
T ss_pred             CCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCE----EEEEHHHHHHCCCCCHH-------HHHHHHHHHHHHHH
T ss_conf             99758789998899999999999983899978816902----47338878614765211-------79999999999984


Q ss_pred             CC--CEEEEEEEEEC----CCHHHHHHHHHHHHHHHCC-CEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf             38--79998423204----7135888999999998549-68998178686775238740566898999998505089804
Q gi|254781047|r  139 ES--RVLCFDEFMIT----NIADAIILSRLFAALFSHG-CIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD  211 (404)
Q Consensus       139 ~~--~lLCfDEF~V~----DiaDAmil~rl~~~lf~~g-v~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~  211 (404)
                      .-  -+||+||.|.-    .-.-+|=.+.+|+-...+| +.+|.+.-  |++ |+.=+-+|      ..|.++|+.+.++
T Consensus       269 ~~~~iILFIDEiHtlvGaG~~~G~~DaaNlLKPaLaRGelr~IGATT--~~E-Yrk~iEkD------~AL~RRFq~V~V~  339 (857)
T PRK10865        269 QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATT--LDE-YRQYIEKD------AALERRFQKVFVA  339 (857)
T ss_pred             CCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECC--HHH-HHHHCCCC------HHHHHHCCCCCCC
T ss_conf             78986999734354336887777534788867887379854999458--999-99871345------8899853710068


Q ss_pred             C
Q ss_conf             7
Q gi|254781047|r  212 S  212 (404)
Q Consensus       212 ~  212 (404)
                      .
T Consensus       340 E  340 (857)
T PRK10865        340 E  340 (857)
T ss_pred             C
T ss_conf             9


No 53 
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.36  E-value=0.0011  Score=43.40  Aligned_cols=119  Identities=15%  Similarity=0.166  Sum_probs=73.1

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCH-----------------HHH----HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             99888887728999999998578111-----------------468----889999999999999971311224665578
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALVPIEK-----------------KCR----LHFYEFMKDVHSRIIMYRKKIEFGEILESD  127 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l~~~~-----------------K~R----~HFh~FM~~ih~~l~~~~~~~~~~~~~~~d  127 (404)
                      +-+||++|+|||-+.-+|-..+-...                 +.-    -+|.++...        ..  . ......|
T Consensus        39 lLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~~i~~~~~~~~~~~~--------~~--~-~~~~~~d  107 (337)
T PRK12402         39 LVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKKYLVEDPRFAHFYDD--------PK--R-KYKSVID  107 (337)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEECCCCHHHHHCC--------HH--H-CCCCHHH
T ss_conf             98889298489999999999967997567833311653113564001016642344201--------53--3-2773789


Q ss_pred             HHHHHHHHHH------CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             0789999996------1387999842320471358889999999985496899817868677523874056689899999
Q gi|254781047|r  128 PIPLVASSIA------LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELL  201 (404)
Q Consensus       128 pl~~va~~l~------~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~l  201 (404)
                      .+..+.++.+      ..++++-+||-+--.....--|.++++..- ..+++|.+.|.+ +.+             |+.|
T Consensus       108 ~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq~aLlk~lEe~~-~~~~fIl~t~~~-~~i-------------i~tI  172 (337)
T PRK12402        108 NFKHILKEYASMRPLSADYKLILFDNAEALREDAQQALRRIMERYS-ETCRFIFSTTQP-SKL-------------IPPI  172 (337)
T ss_pred             HHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCC-CCEEEEEECCCC-CCC-------------CHHH
T ss_conf             9999999986148877880499970713179999999998874088-766998723864-447-------------5247


Q ss_pred             HHCCEEEECCCC
Q ss_conf             850508980473
Q gi|254781047|r  202 EKKLEIISLDSG  213 (404)
Q Consensus       202 k~~~~V~~l~~~  213 (404)
                      ..+|..+++...
T Consensus       173 ~SRC~~i~F~~~  184 (337)
T PRK12402        173 RSRCLPLFFRPV  184 (337)
T ss_pred             HHHCEEEECCCC
T ss_conf             762445435898


No 54 
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=97.34  E-value=0.00025  Score=47.55  Aligned_cols=85  Identities=29%  Similarity=0.347  Sum_probs=51.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf             9988888772899999999857811----146888999999999999997131122466557807899999961387999
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALVPIE----KKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC  144 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l~~~----~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC  144 (404)
                      |||||+.|+|||.++..+-..+-..    .+.++                         ...+|-...-+... .-.+.+
T Consensus         1 i~l~G~~G~GKS~~a~~la~~~~~~~~~~~~~~~-------------------------Y~~~~~~~~wdgY~-gq~vvi   54 (105)
T pfam00910         1 IWLYGPPGCGKSTLAKYLARALLDHLGLPKKDSV-------------------------YSRNPDDDFWDGYT-GQPVVI   54 (105)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCE-------------------------EECCCCCCCCCCCC-CCEEEE
T ss_conf             9897999898899999999999998377878977-------------------------96788776567889-985799


Q ss_pred             EEEE-EECCCH-HHHHHHHHHH---------HHHHCC-----CEEEEECCC
Q ss_conf             8423-204713-5888999999---------998549-----689981786
Q gi|254781047|r  145 FDEF-MITNIA-DAIILSRLFA---------ALFSHG-----CIIVMTSNF  179 (404)
Q Consensus       145 fDEF-~V~Dia-DAmil~rl~~---------~lf~~g-----v~lV~TSN~  179 (404)
                      +||| ++.|-. +.+.+-|+..         .+-++|     ..+|+|||.
T Consensus        55 ~DD~~~~~~~~~~~~~~~~lvs~~p~~~~ma~le~Kg~~f~s~~vi~tsN~  105 (105)
T pfam00910        55 IDDFGQNPDGPSDEAELIRLVSSTPYPPPMAALEEKGTPFTSKFVIVTSNF  105 (105)
T ss_pred             EECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEECCC
T ss_conf             965777888628899999875699838886676148884468889994799


No 55 
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.30  E-value=0.00041  Score=46.16  Aligned_cols=108  Identities=18%  Similarity=0.168  Sum_probs=59.7

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH----HHHCCCCE
Q ss_conf             64998888877289999999985781114688899999999999999713112246655780789999----99613879
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVAS----SIALESRV  142 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~----~l~~~~~l  142 (404)
                      .-+-+||++|+|||-|-.+.-..+.      .+|.++        +...       .+.+| |..+..    ....+..|
T Consensus        38 ~s~Il~GPPG~GKTTlA~iiA~~~~------~~f~~l--------nA~~-------~gv~d-ir~ii~~a~~~~~~~~ti   95 (417)
T PRK13342         38 SSMILWGPPGTGKTTLARIIAGATD------AEFEAL--------SAVT-------SGVKD-LREVIEEAKQSRLGRRTI   95 (417)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC------CCEEEE--------ECCC-------CCHHH-HHHHHHHHHHHHCCCCEE
T ss_conf             7599889699989999999999868------988996--------1410-------38899-999999988631489659


Q ss_pred             EEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH-HHHCCCCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf             9984232047135888999999998549689981786867-752387405668989999985050898047
Q gi|254781047|r  143 LCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPE-NLYKDEINRNVLVSFIELLEKKLEIISLDS  212 (404)
Q Consensus       143 LCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~-dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~  212 (404)
                      |++||.|--+-+---.   |+..+=+--+++|.+.---|- .+             ...|..+|.|+.+..
T Consensus        96 lfiDEIHRfnK~QQD~---LLp~vE~g~iiLIgATTENP~f~i-------------n~aLlSRc~vf~l~~  150 (417)
T PRK13342         96 LFIDEIHRFNKAQQDA---LLPHVEDGTITLIGATTENPSFEV-------------NPALLSRAQVFELKP  150 (417)
T ss_pred             EEEECHHHCCHHHHHH---HHHHHHCCCEEEEEECCCCCHHHC-------------CHHHHHHHHHEECCC
T ss_conf             9997820058899999---987511265699974157922534-------------898985657002058


No 56 
>KOG0732 consensus
Probab=97.30  E-value=0.00047  Score=45.82  Aligned_cols=112  Identities=19%  Similarity=0.270  Sum_probs=71.2

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             66688649988888772899999999857811146888999999999999997131122466557807899999961387
Q gi|254781047|r   62 KYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR  141 (404)
Q Consensus        62 ~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~  141 (404)
                      .-++|||+-+||++|+|||...-..-.+++-.. +++-|  ||..--+-+..|-+.....    ---+...|  -....-
T Consensus       295 ~itpPrgvL~~GppGTGkTl~araLa~~~s~~~-~kisf--fmrkgaD~lskwvgEaERq----lrllFeeA--~k~qPS  365 (1080)
T KOG0732         295 NITPPRGVLFHGPPGTGKTLMARALAAACSRGN-RKISF--FMRKGADCLSKWVGEAERQ----LRLLFEEA--QKTQPS  365 (1080)
T ss_pred             CCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCC-CCCCH--HHHCCCHHHCCCCCCHHHH----HHHHHHHH--HCCCCE
T ss_conf             668986323028998725688886665405411-02024--4314844332544757788----99889887--444851


Q ss_pred             EEEEEEEE----EC----CCHHHHHHHHHHHHHHH---C-CCEEEEECCCCHH
Q ss_conf             99984232----04----71358889999999985---4-9689981786867
Q gi|254781047|r  142 VLCFDEFM----IT----NIADAIILSRLFAALFS---H-GCIIVMTSNFIPE  182 (404)
Q Consensus       142 lLCfDEF~----V~----DiaDAmil~rl~~~lf~---~-gv~lV~TSN~~P~  182 (404)
                      +++|||..    |.    +-..|-|...||--+..   + -|++|...||++.
T Consensus       366 IIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda  418 (1080)
T KOG0732         366 IIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDA  418 (1080)
T ss_pred             EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCC
T ss_conf             77305556646565366777445677778876047777786589715678332


No 57 
>KOG0734 consensus
Probab=97.26  E-value=0.0087  Score=37.74  Aligned_cols=159  Identities=25%  Similarity=0.337  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH----H
Q ss_conf             999999999999861354333225664310246666668864998888877289999999985781114688899----9
Q gi|254781047|r   27 SVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY----E  102 (404)
Q Consensus        27 ~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh----~  102 (404)
                      .|-.+|+.+-+=|++.     .-|.++.+        .-|||+.|-|++|+|||||--+.---+.++    + ||    +
T Consensus       311 EAK~ELeEiVefLkdP-----~kftrLGG--------KLPKGVLLvGPPGTGKTlLARAvAGEA~VP----F-F~~sGSE  372 (752)
T KOG0734         311 EAKQELEEIVEFLKDP-----TKFTRLGG--------KLPKGVLLVGPPGTGKTLLARAVAGEAGVP----F-FYASGSE  372 (752)
T ss_pred             HHHHHHHHHHHHHCCC-----HHHHHCCC--------CCCCCEEEECCCCCCHHHHHHHHHCCCCCC----E-EECCCCC
T ss_conf             8999999999986090-----87643147--------588853876899975569999860556897----4-7416620


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEE----CCCHHH----HHHHHHHHHH----HHCC
Q ss_conf             999999999997131122466557807899999961387999842320----471358----8899999999----8549
Q gi|254781047|r  103 FMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDEFMI----TNIADA----IILSRLFAAL----FSHG  170 (404)
Q Consensus       103 FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF~V----~DiaDA----mil~rl~~~l----f~~g  170 (404)
                      |     ++|..-.|...        -=...+..-+.---+|+|||..-    ...-|.    +-|..|+-.+    -+.|
T Consensus       373 F-----dEm~VGvGArR--------VRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeG  439 (752)
T KOG0734         373 F-----DEMFVGVGARR--------VRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEG  439 (752)
T ss_pred             H-----HHHHHCCCHHH--------HHHHHHHHHHCCCEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             4-----45422014899--------9999999873498599972002205667862778999899999998428676886


Q ss_pred             CEEEEECCCCHHHHHCCCCCH-HHH-----------HHHHHHHHHCCEEEECCCCCHHHH
Q ss_conf             689981786867752387405-668-----------989999985050898047311221
Q gi|254781047|r  171 CIIVMTSNFIPENLYKDEINR-NVL-----------VSFIELLEKKLEIISLDSGQDYRR  218 (404)
Q Consensus       171 v~lV~TSN~~P~dLY~~GLqR-~~F-----------lPfI~~lk~~~~V~~l~~~~DYR~  218 (404)
                      |++|+--|+ |++|=+ -|-| -+|           --=-++|+.++.-+.++.++|--.
T Consensus       440 iIvigATNf-pe~LD~-AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~i  497 (752)
T KOG0734         440 IIVIGATNF-PEALDK-ALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKI  497 (752)
T ss_pred             EEEEECCCC-HHHHHH-HHCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHH
T ss_conf             699951687-455568-7348875533674689773328999999983487656778767


No 58 
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.23  E-value=0.001  Score=43.66  Aligned_cols=115  Identities=16%  Similarity=0.173  Sum_probs=68.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC----HHHHHHHHHH---CCCC
Q ss_conf             99888887728999999998578111468889999999999999971311224665578----0789999996---1387
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESD----PIPLVASSIA---LESR  141 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~d----pl~~va~~l~---~~~~  141 (404)
                      +-+||++|+|||-+--.+-..+-... .+.|+.        +++..     . . ...|    -+..+|+.-.   ..++
T Consensus        40 lLf~GppG~GKTt~a~~la~~l~~~~-~~~~~l--------elnas-----d-~-r~id~vr~~i~~~~~~~~~~~~~~k  103 (318)
T PRK00440         40 LLFAGPPGTGKTTAALALARELYGEY-WRENFL--------ELNAS-----D-E-RGIDVIRNKIKEFARTAPVGGAPFK  103 (318)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCC-CCCCEE--------EECCC-----C-C-CCHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             98889599889999999999976986-434768--------95164-----5-6-6717899999999972677899738


Q ss_pred             EEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCC
Q ss_conf             9998423204713588899999999854968998178686775238740566898999998505089804731
Q gi|254781047|r  142 VLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQ  214 (404)
Q Consensus       142 lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~  214 (404)
                      ++.+||.+--.-...--|.+.++.. ...+.+|.|.|.+ +.+             |+.|..+|..+.+....
T Consensus       104 iiiiDE~d~l~~~aq~aL~~~mE~~-~~~~~fil~~n~~-~ki-------------i~~i~SRc~~i~f~~~~  161 (318)
T PRK00440        104 IIFLDEADNLTSDAQQALRRTMEMY-SQTTRFILSCNYS-SKI-------------IDPIQSRCAVFRFSPLP  161 (318)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC-CCCCEEEEECCCC-CCC-------------CCCHHHHHEEEECCCCC
T ss_conf             9998685532255678887643105-6662588634883-337-------------61556551011157899


No 59 
>KOG0742 consensus
Probab=97.22  E-value=0.0062  Score=38.70  Aligned_cols=94  Identities=24%  Similarity=0.363  Sum_probs=51.2

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHH-------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf             66688649988888772899999999857811146-------88899999999999999713112246655780789999
Q gi|254781047|r   62 KYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKC-------RLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVAS  134 (404)
Q Consensus        62 ~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~-------R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~  134 (404)
                      ...+-|.+..||++|+||||.-.-+-...-.....       -+- -+=.-.|| .++.|.++                 
T Consensus       380 h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG-~qaVTkiH-~lFDWakk-----------------  440 (630)
T KOG0742         380 HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLG-AQAVTKIH-KLFDWAKK-----------------  440 (630)
T ss_pred             CCCHHHHEEEECCCCCCHHHHHHHHHHHCCCCEEHHCCCCCCCCH-HHHHHHHH-HHHHHHHH-----------------
T ss_conf             243044003247999860499999988528741001378755521-78899999-98788751-----------------


Q ss_pred             HHHCCCCEEEEEEEEECCCHHHHHHHHH------------HHHHH-----HCCCEEEEECCCCHH
Q ss_conf             9961387999842320471358889999------------99998-----549689981786867
Q gi|254781047|r  135 SIALESRVLCFDEFMITNIADAIILSRL------------FAALF-----SHGCIIVMTSNFIPE  182 (404)
Q Consensus       135 ~l~~~~~lLCfDEF~V~DiaDAmil~rl------------~~~lf-----~~gv~lV~TSN~~P~  182 (404)
                        ++..-||++||      |||.+-.|-            =--||     .+.++||..||+|-+
T Consensus       441 --S~rGLllFIDE------ADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgd  497 (630)
T KOG0742         441 --SRRGLLLFIDE------ADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGD  497 (630)
T ss_pred             --CCCCEEEEEHH------HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
T ss_conf             --56644998611------6789987520102588999998898762565542689960588321


No 60 
>KOG0744 consensus
Probab=97.19  E-value=0.00031  Score=46.95  Aligned_cols=148  Identities=19%  Similarity=0.231  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHH-----HHCCCC-CCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             999999999861354333225664-----310246-66666886499888887728999999998578111468889999
Q gi|254781047|r   30 KSFDRLLVDLYKQQKQEQGIFSWL-----WNLRGI-KRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEF  103 (404)
Q Consensus        30 ~~L~~L~~~l~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~F  103 (404)
                      .+++.+++.|.-...-+..+.+..     ++..+- ..--+-.|=+.+|||+|+|||-|-..+.+.+.+.---|. .+.-
T Consensus       135 ~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y-~~~~  213 (423)
T KOG0744         135 AEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRY-YKGQ  213 (423)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHEEEECCCC-CCCE
T ss_conf             154305788764132899999999999888761788744664148998579998822799999875146523764-4406


Q ss_pred             HHHH--HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE--EEEEEE-----------CCCHHHHHHHH-HHHHHH
Q ss_conf             9999--9999997131122466557807899999961387999--842320-----------47135888999-999998
Q gi|254781047|r  104 MKDV--HSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC--FDEFMI-----------TNIADAIILSR-LFAALF  167 (404)
Q Consensus       104 M~~i--h~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC--fDEF~V-----------~DiaDAmil~r-l~~~lf  167 (404)
                      |.||  |+..-+|-+..+.-   ..-..++|..-+..+.-++|  +||.+-           +.+.|||-.-. |+..+=
T Consensus       214 liEinshsLFSKWFsESgKl---V~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlD  290 (423)
T KOG0744         214 LIEINSHSLFSKWFSESGKL---VAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLD  290 (423)
T ss_pred             EEEEEHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             99970467889887121138---999999999997178968999807878889998754137998218999999999899


Q ss_pred             ----HCCCEEEEECCCCH
Q ss_conf             ----54968998178686
Q gi|254781047|r  168 ----SHGCIIVMTSNFIP  181 (404)
Q Consensus       168 ----~~gv~lV~TSN~~P  181 (404)
                          ..++.+.+|||-.-
T Consensus       291 rlK~~~NvliL~TSNl~~  308 (423)
T KOG0744         291 RLKRYPNVLILATSNLTD  308 (423)
T ss_pred             HHCCCCCEEEEECCCHHH
T ss_conf             860479779996262677


No 61 
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936   Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH.    FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=97.19  E-value=0.00017  Score=48.57  Aligned_cols=171  Identities=18%  Similarity=0.244  Sum_probs=81.8

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             8864998888877289999999985781114688899-----99999999999971311224665578078999999613
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY-----EFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALE  139 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh-----~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~  139 (404)
                      .|||+-|+||+|+|||+|-.+----+.++      |-     +|     -+|+-     +.+.+...|-.+..    .++
T Consensus        91 IPKGVLLvGPPGTGKTLLAKAvAGEA~VP------FF~iSGSdF-----VEMFV-----GVGASRVRDLFeqA----K~n  150 (505)
T TIGR01241        91 IPKGVLLVGPPGTGKTLLAKAVAGEAGVP------FFSISGSDF-----VEMFV-----GVGASRVRDLFEQA----KKN  150 (505)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHCCCCCC------CEEECCCCE-----EECCC-----CCCCEEHHHHHHHH----HHH
T ss_conf             98714731787842467887520258896------247407610-----11120-----56400014457999----971


Q ss_pred             CC-EEEEEEEEECCCHHHH--------------HHHHHHHHH----HHCCCEEEEECCCC----HHHHHCCCCCHHHHH-
Q ss_conf             87-9998423204713588--------------899999999----85496899817868----677523874056689-
Q gi|254781047|r  140 SR-VLCFDEFMITNIADAI--------------ILSRLFAAL----FSHGCIIVMTSNFI----PENLYKDEINRNVLV-  195 (404)
Q Consensus       140 ~~-lLCfDEF~V~DiaDAm--------------il~rl~~~l----f~~gv~lV~TSN~~----P~dLY~~GLqR~~Fl-  195 (404)
                      ++ ||||||.-  =|+=.-              -|..||-.+    -+-||+|+|--|||    |-=|=++-.=|+-.+ 
T Consensus       151 APCIIFIDEID--AVGr~RGaG~lGGGnDEREQTLNQLLVEMDGF~~~~gvIv~AATNRPDvLD~ALLRPGRFDRQv~V~  228 (505)
T TIGR01241       151 APCIIFIDEID--AVGRQRGAGELGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVD  228 (505)
T ss_pred             CCCEEEEECHH--HCCCCCCCCCCCCCCCHHHHHHHHHHEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECC
T ss_conf             89705640100--0033356436676541355433233133178589885799850488411651006878744513458


Q ss_pred             -HH----HHHHHHCCEEEECCCCCHHHHCC-----CCCCCE-----------EEECCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             -89----99998505089804731122112-----367830-----------2203530226899999998604444677
Q gi|254781047|r  196 -SF----IELLEKKLEIISLDSGQDYRRKE-----QSILPI-----------YMTPLNSYNRVLMDKLWAHITKGKKSLS  254 (404)
Q Consensus       196 -Pf----I~~lk~~~~V~~l~~~~DYR~~~-----~~~~~~-----------y~~p~~~~~~~~l~~~f~~l~~~~~~~~  254 (404)
                       |=    =++|+=|..=+.|+...|=..-.     -++++.           =.....+-+-..++++..+...|.+..+
T Consensus       229 ~PD~~GR~~IL~VH~~~~kLa~~vdL~~~Ar~TPGfSGADLaNl~NEAALlAAR~n~~~i~~~~~eeA~Drv~~G~ekKs  308 (505)
T TIGR01241       229 LPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAVDRVIAGLEKKS  308 (505)
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHCCCCCCC
T ss_conf             88746789999998548899702477999701568767889999999999986179865628889878776522766788


Q ss_pred             CCE
Q ss_conf             632
Q gi|254781047|r  255 LNI  257 (404)
Q Consensus       255 ~~i  257 (404)
                      ..+
T Consensus       309 r~i  311 (505)
T TIGR01241       309 RVI  311 (505)
T ss_pred             CCC
T ss_conf             532


No 62 
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461    Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=97.16  E-value=0.0025  Score=41.18  Aligned_cols=107  Identities=22%  Similarity=0.287  Sum_probs=59.5

Q ss_pred             CCCCCCCEEEE-ECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHHHH------CCCCCCCCCCCCHHHHH
Q ss_conf             66668864998-88887728999999998578111468889999-999999999971------31122466557807899
Q gi|254781047|r   61 RKYCSMQGIYL-HGDVGQGKSMLMNLFFALVPIEKKCRLHFYEF-MKDVHSRIIMYR------KKIEFGEILESDPIPLV  132 (404)
Q Consensus        61 ~~~~~~kGlYL-~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~F-M~~ih~~l~~~~------~~~~~~~~~~~dpl~~v  132 (404)
                      ..+..|-|-|| .||-|+|||=|---+-+      ..=|||=.| |.|=..+=.-.|      |-.+..+++.   |.  
T Consensus       521 ~~~nkP~GSFLF~GPTGVGKTElak~LA~------~LGv~l~RFDMSEYmEKHTVsRLIGsPPGYVGfEqGGL---LT--  589 (774)
T TIGR02639       521 GEPNKPVGSFLFVGPTGVGKTELAKQLAE------ELGVHLLRFDMSEYMEKHTVSRLIGSPPGYVGFEQGGL---LT--  589 (774)
T ss_pred             CCCCCCEEEEEEECCCCCCHHHHHHHHHH------HHCCHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC---CH--
T ss_conf             77888168888647989625788999999------70820010465044689999874168888513167772---12--


Q ss_pred             HHHHHCC-CCEEEEEEEEECCCHHHHHHHHHHHHHHH--------------CCCEEEEECCCCHHH
Q ss_conf             9999613-87999842320471358889999999985--------------496899817868677
Q gi|254781047|r  133 ASSIALE-SRVLCFDEFMITNIADAIILSRLFAALFS--------------HGCIIVMTSNFIPEN  183 (404)
Q Consensus       133 a~~l~~~-~~lLCfDEF~V~DiaDAmil~rl~~~lf~--------------~gv~lV~TSN~~P~d  183 (404)
                       +.+-+. +-||.+||.+=   |..=|..=||+-+ +              ++|+||||||.=-.+
T Consensus       590 -~AvrK~P~cVLLLDEIEK---AHpDI~NILLQVM-D~AtLTDN~GrKaDFRNVILIMTSNaGa~E  650 (774)
T TIGR02639       590 -DAVRKHPHCVLLLDEIEK---AHPDIYNILLQVM-DYATLTDNNGRKADFRNVILIMTSNAGARE  650 (774)
T ss_pred             -HHHCCCCCEEEHHHHHHH---HHHHHHHHHHHHH-CCCEEECCCCCEEEECCEEEEECCCCCCCC
T ss_conf             -233128853542346666---3133666787663-354340588857631136888403700102


No 63 
>PRK06921 hypothetical protein; Provisional
Probab=97.10  E-value=0.0044  Score=39.65  Aligned_cols=74  Identities=22%  Similarity=0.319  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHCCEEEECCC--CCCCCCCHHH-H-HHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             6899999853788998189--8787246389-9-9899999998228982899807897880134676531348998988
Q gi|254781047|r  289 ANDFVEIANRFDVVIINDI--PLLKEDRKDW-I-KRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSR  364 (404)
Q Consensus       289 ~~DYi~Ia~~f~ti~I~~V--P~l~~~~~d~-a-rRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SR  364 (404)
                      ...++......+.++|+|+  |..+.+..++ + -.+-.+|+.=|-++.+.++|++..+++|-.   -+     +|+.||
T Consensus       167 ~~~~l~~~~~~dlLIIDDLfk~~~G~e~~te~~~~~lf~iIN~Ry~~~kptIiSSNl~~~~L~~---i~-----e~i~SR  238 (265)
T PRK06921        167 LEAKLNRMKKVEVLFIDDLFKPVNGKPRATEWQIEQTYSVVNYRYLNHKPILISSELTIDELLD---ID-----EALGSR  238 (265)
T ss_pred             HHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH---HH-----HHHHHH
T ss_conf             9999998632999998221223479878988999999999999997699989986899899987---63-----798888


Q ss_pred             HHHHCC
Q ss_conf             745242
Q gi|254781047|r  365 LYEMFS  370 (404)
Q Consensus       365 L~EMqS  370 (404)
                      |.||.+
T Consensus       239 i~emc~  244 (265)
T PRK06921        239 IVEMCK  244 (265)
T ss_pred             HHHHCC
T ss_conf             999725


No 64 
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.10  E-value=0.012  Score=36.95  Aligned_cols=21  Identities=24%  Similarity=0.346  Sum_probs=11.9

Q ss_pred             EEEECCCCCCHHHHHHHHHHH
Q ss_conf             998888877289999999985
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFAL   89 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~   89 (404)
                      .-|-|.+|+|||-+..-+-+.
T Consensus       211 PiLVGepGVGKTAIvEGLA~r  231 (852)
T TIGR03345       211 PILTGEAGVGKTAVVEGLALR  231 (852)
T ss_pred             CEEECCCCCCHHHHHHHHHHH
T ss_conf             746579998799999999999


No 65 
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.10  E-value=0.0093  Score=37.56  Aligned_cols=114  Identities=21%  Similarity=0.251  Sum_probs=70.2

Q ss_pred             CCCCCCEEEE-ECCCCCCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCHHHHHHH
Q ss_conf             6668864998-888877289999999985781--11468889999999999999971311----2246655780789999
Q gi|254781047|r   62 KYCSMQGIYL-HGDVGQGKSMLMNLFFALVPI--EKKCRLHFYEFMKDVHSRIIMYRKKI----EFGEILESDPIPLVAS  134 (404)
Q Consensus        62 ~~~~~kGlYL-~G~VG~GKT~LMdlFy~~l~~--~~K~R~HFh~FM~~ih~~l~~~~~~~----~~~~~~~~dpl~~va~  134 (404)
                      .+..|-|.+| -|+-|+|||-|....-+.+-.  ..--|+---+||..  .....+.|..    +..+++      ..-.
T Consensus       516 dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek--HsVSrLIGaPPGYVGyeeGG------~LTE  587 (786)
T COG0542         516 DPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK--HSVSRLIGAPPGYVGYEEGG------QLTE  587 (786)
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECHHHHHHH--HHHHHHHCCCCCCCEECCCC------CHHH
T ss_conf             999873578866788656999999999996599744455456877778--77998727999872006554------0037


Q ss_pred             HHHCC-CCEEEEEEEEECCCHHHHHHHHHHHHHHH--------------CCCEEEEECCCCHHHHHCC
Q ss_conf             99613-87999842320471358889999999985--------------4968998178686775238
Q gi|254781047|r  135 SIALE-SRVLCFDEFMITNIADAIILSRLFAALFS--------------HGCIIVMTSNFIPENLYKD  187 (404)
Q Consensus       135 ~l~~~-~~lLCfDEF~V~DiaDAmil~rl~~~lf~--------------~gv~lV~TSN~~P~dLY~~  187 (404)
                      .+-++ +.|+.|||++=-++   =++.-|++-| +              +++++|+|||.--+.+-.+
T Consensus       588 aVRr~PySViLlDEIEKAHp---dV~nilLQVl-DdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~  651 (786)
T COG0542         588 AVRRKPYSVILLDEIEKAHP---DVFNLLLQVL-DDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRD  651 (786)
T ss_pred             HHHCCCCEEEEECHHHHCCH---HHHHHHHHHH-CCCCEECCCCCEEECCEEEEEEECCCCHHHHHHH
T ss_conf             66069986888412644088---9999999984-6780554899888430028998450265989753


No 66 
>KOG1051 consensus
Probab=97.08  E-value=0.016  Score=36.11  Aligned_cols=119  Identities=20%  Similarity=0.160  Sum_probs=81.2

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC-C
Q ss_conf             6886499888887728999999998578111--468889999999999999971311224665578078999999613-8
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEK--KCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALE-S  140 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~--K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~-~  140 (404)
                      .++--+-+-|+-|+|||=|-...-+.+-...  --|+-+-+||. +- ++.   +.  ...-....-...++..+... +
T Consensus       589 ~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e-vs-kli---gs--p~gyvG~e~gg~LteavrrrP~  661 (898)
T KOG1051         589 NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE-VS-KLI---GS--PPGYVGKEEGGQLTEAVKRRPY  661 (898)
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECHHHHHH-HH-HCC---CC--CCCCCCCHHHHHHHHHHHCCCC
T ss_conf             88858999788841389999999999728864268961455555-65-304---89--9555463057788899716996


Q ss_pred             CEEEEEEEEECCCHHHHHHHHHHHHH----------HHCCCEEEEECCCCHHHHHCCCC
Q ss_conf             79998423204713588899999999----------85496899817868677523874
Q gi|254781047|r  141 RVLCFDEFMITNIADAIILSRLFAAL----------FSHGCIIVMTSNFIPENLYKDEI  189 (404)
Q Consensus       141 ~lLCfDEF~V~DiaDAmil~rl~~~l----------f~~gv~lV~TSN~~P~dLY~~GL  189 (404)
                      .|+.|||.+-.|.-.-++|..+++.-          --+++++|+|||..-+.+-.+..
T Consensus       662 sVvLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~  720 (898)
T KOG1051         662 SVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIANDAS  720 (898)
T ss_pred             EEEEEECHHHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEEEECCCCHHHHHCCCC
T ss_conf             59998302222888999999998627400588867504645999942631666640454


No 67 
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.07  E-value=0.0056  Score=38.94  Aligned_cols=98  Identities=17%  Similarity=0.231  Sum_probs=44.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCHHHHHHHHHHCC-
Q ss_conf             99888887728999999998578111------4688899999999999999--71311224665578078999999613-
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALVPIEK------KCRLHFYEFMKDVHSRIIM--YRKKIEFGEILESDPIPLVASSIALE-  139 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l~~~~------K~R~HFh~FM~~ih~~l~~--~~~~~~~~~~~~~dpl~~va~~l~~~-  139 (404)
                      .-|-|.+|+|||-+..-+-..+-...      .+|+    |.+++-.-+.-  +||.       -+.-|..|.+++.+. 
T Consensus       197 piLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i----~~LDlg~LvAGtkyRGe-------FEeRlk~ii~ev~~~~  265 (852)
T TIGR03346       197 PVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRL----LALDMGALIAGAKYRGE-------FEERLKAVLNEVTKSE  265 (852)
T ss_pred             CCEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCC----EEEEHHHHHCCCCCCHH-------HHHHHHHHHHHHHHCC
T ss_conf             721279998799999999999866999978851851----27528877521530078-------9999999999998589


Q ss_pred             -CCEEEEEEEEEC----CCHHHHHHHHHHHHHHHCC-CEEEEEC
Q ss_conf             -879998423204----7135888999999998549-6899817
Q gi|254781047|r  140 -SRVLCFDEFMIT----NIADAIILSRLFAALFSHG-CIIVMTS  177 (404)
Q Consensus       140 -~~lLCfDEF~V~----DiaDAmil~rl~~~lf~~g-v~lV~TS  177 (404)
                       --+|+|||.|.-    --.-+|=.+++|+-...+| +.+|.+.
T Consensus       266 ~~iILFIDEiHtliGaG~~~G~~DAaNlLKPaLarGelr~IgAT  309 (852)
T TIGR03346       266 GQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGAT  309 (852)
T ss_pred             CCEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf             98799961255532688766641067774378747985599827


No 68 
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.00  E-value=0.0055  Score=38.99  Aligned_cols=99  Identities=17%  Similarity=0.217  Sum_probs=50.3

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             6499888887728999999998578111------4688899999999999999--7131122466557807899999961
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIEK------KCRLHFYEFMKDVHSRIIM--YRKKIEFGEILESDPIPLVASSIAL  138 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~------K~R~HFh~FM~~ih~~l~~--~~~~~~~~~~~~~dpl~~va~~l~~  138 (404)
                      +..-|-|++|+|||-+..-+-..+....      -+|+    |.+++-..+.-  +||.       -+.-|..|.+++.+
T Consensus       201 NNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i----~sLDl~~L~AGtkyRGe-------FEeRlk~il~ei~~  269 (823)
T CHL00095        201 NNPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLV----LTLDIGLLLAGTKYRGE-------FEERIKKIMDEIKK  269 (823)
T ss_pred             CCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCE----EEEEHHHHHHCCCCCHH-------HHHHHHHHHHHHHH
T ss_conf             88502379998799999999997608899868759936----88428877533422267-------99999999999985


Q ss_pred             CCC-EEEEEEEEEC---CCH-HHHHHHHHHHHHHHCC-CEEEEE
Q ss_conf             387-9998423204---713-5888999999998549-689981
Q gi|254781047|r  139 ESR-VLCFDEFMIT---NIA-DAIILSRLFAALFSHG-CIIVMT  176 (404)
Q Consensus       139 ~~~-lLCfDEF~V~---Dia-DAmil~rl~~~lf~~g-v~lV~T  176 (404)
                      .-. +|++||.|.-   --+ -+|=.+.+++-...+| +.+|.+
T Consensus       270 ~~~iILFIDEiHtlvGaG~~~g~~DaaNlLKPaLarGel~~IGA  313 (823)
T CHL00095        270 ANNIILVIDEIHTLIGAGAAEGAIDAANILKPALARGKLQCIGA  313 (823)
T ss_pred             CCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf             79869997351653288976664317887657864898669970


No 69 
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=96.90  E-value=0.0022  Score=41.48  Aligned_cols=109  Identities=17%  Similarity=0.246  Sum_probs=59.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-HHHHHHHHHHCCCCEEE
Q ss_conf             4998888877289999999985781114--68889999999999999971311224665578-07899999961387999
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEKK--CRLHFYEFMKDVHSRIIMYRKKIEFGEILESD-PIPLVASSIALESRVLC  144 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K--~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~d-pl~~va~~l~~~~~lLC  144 (404)
                      -+-+.|+-|+|||+|-..+-+.+...++  .|++.-+|+.+  ..+..+-+....--..... .|...++  .....|++
T Consensus         5 ~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~--~~v~~l~g~~~gyvg~~~~G~l~~~v~--~~p~~Vil   80 (168)
T pfam07724         5 SFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEE--HSVSRLIGAPPGYVGYEEGGQLTEAVR--RKPYSIVL   80 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCH--HHHHHHCCCCCCCCCCCCCCCHHHHHH--HCCCCEEE
T ss_conf             99988989989999999999996798534488557565425--699987058998726242650789998--38984898


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHCC--------------CEEEEECCCCHHHH
Q ss_conf             84232047135888999999998549--------------68998178686775
Q gi|254781047|r  145 FDEFMITNIADAIILSRLFAALFSHG--------------CIIVMTSNFIPENL  184 (404)
Q Consensus       145 fDEF~V~DiaDAmil~rl~~~lf~~g--------------v~lV~TSN~~P~dL  184 (404)
                      |||++=-+   .-+..-|++ +++.|              +++|+|||..-+++
T Consensus        81 lDEIeKa~---~~V~~~LL~-ild~g~~~d~~g~~v~~~n~i~i~Tsn~g~~~~  130 (168)
T pfam07724        81 IDEIEKAH---PGVQNDLLQ-ILEGGTLTDKQGRKVDFRNTLFIMTGNFGSEKI  130 (168)
T ss_pred             EHHHHHHC---HHHHHHHHH-HCCCCCEECCCCCEEECCCEEEEECCCCCCHHH
T ss_conf             65776658---999999998-705870636999678446479997687372999


No 70 
>KOG0737 consensus
Probab=96.87  E-value=0.00075  Score=44.52  Aligned_cols=25  Identities=36%  Similarity=0.489  Sum_probs=21.0

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             8864998888877289999999985
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFAL   89 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~   89 (404)
                      +|+|+.|||++|+|||||-...-.-
T Consensus       126 p~kGiLL~GPpG~GKTmlAKA~Ake  150 (386)
T KOG0737         126 PPKGILLYGPPGTGKTMLAKAIAKE  150 (386)
T ss_pred             CCCCCEECCCCCCHHHHHHHHHHHH
T ss_conf             8643051189982188999999987


No 71 
>PRK08116 hypothetical protein; Validated
Probab=96.86  E-value=0.013  Score=36.61  Aligned_cols=79  Identities=23%  Similarity=0.438  Sum_probs=59.9

Q ss_pred             CHHHHHHHHHHCCEEEECCCCCCCCCCHHHH-HHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             4689999985378899818987872463899-989999999822898289980789788013467653134899898874
Q gi|254781047|r  288 SANDFVEIANRFDVVIINDIPLLKEDRKDWI-KRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLY  366 (404)
Q Consensus       288 g~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~a-rRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~  366 (404)
                      +..+++.-..+.+.++|+|+=.-.  ..+.+ -.+-.+||.-|.++.+.++++.-++++|-..      + -.|+.|||.
T Consensus       162 ~~~e~l~~l~~~dLLIiDDlG~e~--~t~w~~e~lf~IIn~Ry~~~kptIiTTNl~~~eL~~~------~-~~Ri~sRl~  232 (262)
T PRK08116        162 DENEIIRALDNADLLILDDLGAEK--DTEWVREKLYNIIDSRYRKGLPTIFTTNLSLEELKNQ------Y-GKRTYSRIL  232 (262)
T ss_pred             HHHHHHHHHHCCCEEEEEHHCCCC--CCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHH------H-HHHHHHHHH
T ss_conf             199999986129989983221456--9878999999999999976999899879999999998------6-379999998


Q ss_pred             HHCCHHHHH
Q ss_conf             524278897
Q gi|254781047|r  367 EMFSAQYIG  375 (404)
Q Consensus       367 EMqS~~yl~  375 (404)
                      ||...--+.
T Consensus       233 e~~~~v~~~  241 (262)
T PRK08116        233 EMCTPVKNE  241 (262)
T ss_pred             HCCEEEEEE
T ss_conf             677899851


No 72 
>pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family.
Probab=96.84  E-value=0.044  Score=33.26  Aligned_cols=25  Identities=24%  Similarity=0.239  Sum_probs=21.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             4998888877289999999985781
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      -+.|||+=|+|||-|+.-|.+.+..
T Consensus        22 ~ivi~G~RR~GKTsLi~~~~~~~~~   46 (223)
T pfam01637        22 IIVVYGPRRCGKTALLREFLEELRE   46 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf             8999868878799999999986334


No 73 
>KOG0729 consensus
Probab=96.76  E-value=0.0057  Score=38.92  Aligned_cols=26  Identities=23%  Similarity=0.319  Sum_probs=21.4

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             68864998888877289999999985
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFAL   89 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~   89 (404)
                      -||+|+.+||++|+|||++--+.-+.
T Consensus       209 dPPKGvllyGPPGtGKTL~ARAVANR  234 (435)
T KOG0729         209 DPPKGVLLYGPPGTGKTLCARAVANR  234 (435)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHCC
T ss_conf             99873378689998610899987456


No 74 
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.72  E-value=0.0031  Score=40.61  Aligned_cols=110  Identities=18%  Similarity=0.163  Sum_probs=59.7

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH---H-H--HCC
Q ss_conf             864998888877289999999985781114688899999999999999713112246655780789999---9-9--613
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVAS---S-I--ALE  139 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~---~-l--~~~  139 (404)
                      ...+-+||++|+|||-|-.+.-+...      .||..+        +..       .++.+| |..|.+   + +  ..+
T Consensus        52 ~~S~Il~GPPGtGKTTLA~iIA~~t~------~~F~~l--------sAv-------~sgvkd-lr~ii~~A~~~~~~~g~  109 (726)
T PRK13341         52 VGSLILYGPPGVGKTTLARIIANHTR------AHFSSL--------NAV-------LAGVKD-LRAEVDAAKERLERHGK  109 (726)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHC------CCEEEE--------ECC-------CCCHHH-HHHHHHHHHHHHHHCCC
T ss_conf             98278889799999999999988748------867998--------562-------037799-99999999999874599


Q ss_pred             CCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf             8799984232047135888999999998549689981786867752387405668989999985050898047
Q gi|254781047|r  140 SRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS  212 (404)
Q Consensus       140 ~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~  212 (404)
                      ..|||+||.|=-+=+---   -|+..+=+--|+||.+..-.|--    -+        +..|-.+|.|+.+..
T Consensus       110 ~tILFIDEIHRfNK~QQD---~LLp~vE~G~i~LIGATTENP~F----~v--------n~ALlSR~~vf~L~~  167 (726)
T PRK13341        110 RTILFIDEVHRFNKAQQD---ALLPWVENGTVTLIGATTENPYF----EV--------NKALVSRSRLFRLKS  167 (726)
T ss_pred             CEEEEEECHHHCCHHHHH---HHHHHHCCCEEEEEEECCCCCCE----EE--------CHHHHHHCEEEEECC
T ss_conf             659998625425887899---87888606838999704789743----64--------298883234667438


No 75 
>KOG0652 consensus
Probab=96.72  E-value=0.0023  Score=41.44  Aligned_cols=162  Identities=19%  Similarity=0.287  Sum_probs=80.4

Q ss_pred             CHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHHHHHHHHHCCC---CCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             005899999999748877898-999999999999999861354---3332256643102466666688649988888772
Q gi|254781047|r    3 LDLVSSRLISLIQDKKLKYNP-AQESVVKSFDRLLVDLYKQQK---QEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQG   78 (404)
Q Consensus         3 ~~~~~~~y~~~v~~~~i~~D~-~Q~~~i~~L~~L~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~G   78 (404)
                      +..+.+.|...|+.-++..-| .|..-|.-|++-.++|.+.--   ..+-.|..    .    ...||+|+.+||++|+|
T Consensus       146 letLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~----l----gi~pPKGvLmYGPPGTG  217 (424)
T KOG0652         146 LETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFEN----L----GIRPPKGVLMYGPPGTG  217 (424)
T ss_pred             HHCCCHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHH----C----CCCCCCCEEEECCCCCC
T ss_conf             210876663010144504687432000325789999999886145656878874----6----88899722765799975


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCHHHHH--HHHHHCCC--CEEEEEEEEE---
Q ss_conf             89999999985781114688899999999999999-7131122466557807899--99996138--7999842320---
Q gi|254781047|r   79 KSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIM-YRKKIEFGEILESDPIPLV--ASSIALES--RVLCFDEFMI---  150 (404)
Q Consensus        79 KT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~-~~~~~~~~~~~~~dpl~~v--a~~l~~~~--~lLCfDEF~V---  150 (404)
                      ||++--..-....      .   .|..-.--.|.+ +-|          |.-..|  |=.++++-  .+|++||..-   
T Consensus       218 KTlmARAcAaqT~------a---TFLKLAgPQLVQMfIG----------dGAkLVRDAFaLAKEkaP~IIFIDElDAIGt  278 (424)
T KOG0652         218 KTLMARACAAQTN------A---TFLKLAGPQLVQMFIG----------DGAKLVRDAFALAKEKAPTIIFIDELDAIGT  278 (424)
T ss_pred             HHHHHHHHHHHCC------C---HHHHHCCHHHHHHHHC----------CHHHHHHHHHHHHHCCCCEEEEEECHHHHCC
T ss_conf             7799999987401------0---6887326477766533----------4188999999875334983899730023233


Q ss_pred             -----CCCHHHHHHHHHHHHHH-------HCCCEEEEECCCC----HHHHHCCCCCH
Q ss_conf             -----47135888999999998-------5496899817868----67752387405
Q gi|254781047|r  151 -----TNIADAIILSRLFAALF-------SHGCIIVMTSNFI----PENLYKDEINR  191 (404)
Q Consensus       151 -----~DiaDAmil~rl~~~lf-------~~gv~lV~TSN~~----P~dLY~~GLqR  191 (404)
                           .--+|--.-...++-|-       +..|.+|+..||.    |.-|-.+.|-|
T Consensus       279 KRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDR  335 (424)
T KOG0652         279 KRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDR  335 (424)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHCCCCCC
T ss_conf             436531234389999999999860489975626788521643434888864466444


No 76 
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345   These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=96.71  E-value=0.01  Score=37.31  Aligned_cols=161  Identities=20%  Similarity=0.302  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf             05899999999748877898999999999999999861354333225664310246666668864998888877289999
Q gi|254781047|r    4 DLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLM   83 (404)
Q Consensus         4 ~~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LM   83 (404)
                      +.+...+-...+.+.+..+..|.+|+..+..                               -|=.=|-||+|+|||-+.
T Consensus       334 ~~~Q~hi~eve~~~~~~l~~~Qk~AL~~~~~-------------------------------~Kv~iLTGGPGTGKtT~t  382 (769)
T TIGR01448       334 EDLQKHILEVEKKLRLKLSEEQKEALKTAIQ-------------------------------DKVVILTGGPGTGKTTIT  382 (769)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-------------------------------CCEEEEECCCCCCHHHHH
T ss_conf             8999999986875067706889999999860-------------------------------948998577888616899


Q ss_pred             HHHHHH------------------------CCCCH-HHHHHHHHHH----HHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf             999985------------------------78111-4688899999----999999999713112246655780789999
Q gi|254781047|r   84 NLFFAL------------------------VPIEK-KCRLHFYEFM----KDVHSRIIMYRKKIEFGEILESDPIPLVAS  134 (404)
Q Consensus        84 dlFy~~------------------------l~~~~-K~R~HFh~FM----~~ih~~l~~~~~~~~~~~~~~~dpl~~va~  134 (404)
                      ..-.+.                        +|+.| -||+  .|.-    .-||+.|-. ..+.......+.|       
T Consensus       383 ~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAPTGrAAkRl--~E~TG~~a~TIHRLlG~-~~~~~~~~k~~~~-------  452 (769)
T TIGR01448       383 KAIIELYEELKGLDLDKDDYVNDDLPVVLAAPTGRAAKRL--AEVTGLEALTIHRLLGY-GSDTKSENKNLED-------  452 (769)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHC--CCCCCCHHHHHHHHHCC-CCCCCCCCHHHCC-------
T ss_conf             9999999871687755312456776488737743788851--10026212347786368-9888732110113-------


Q ss_pred             HHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHC-CCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHH-CCEEEECCC
Q ss_conf             99613879998423204713588899999999854-9689981786867752387405668989999985-050898047
Q gi|254781047|r  135 SIALESRVLCFDEFMITNIADAIILSRLFAALFSH-GCIIVMTSNFIPENLYKDEINRNVLVSFIELLEK-KLEIISLDS  212 (404)
Q Consensus       135 ~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~-gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~-~~~V~~l~~  212 (404)
                        --+|+||-+||+--   -|-.++.+||..+-.+ .+.||-=+---|.= =+ |      .|+-++|.. ...++.|- 
T Consensus       453 --~~~~DL~IvDE~SM---~Dt~L~~~lL~a~P~~a~lllVGD~DQLPSV-~p-G------~VL~DLi~s~~iP~~~LT-  518 (769)
T TIGR01448       453 --PIDADLLIVDESSM---VDTWLASSLLAAVPDHARLLLVGDADQLPSV-GP-G------QVLKDLIQSKVIPVTRLT-  518 (769)
T ss_pred             --CCCCCEEEEECCCH---HHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-CC-C------HHHHHHHHCCCCCEEECC-
T ss_conf             --47877699814621---8899999998617977779888376888988-64-4------089999846886612121-


Q ss_pred             CCHHHHCC
Q ss_conf             31122112
Q gi|254781047|r  213 GQDYRRKE  220 (404)
Q Consensus       213 ~~DYR~~~  220 (404)
                       +=||...
T Consensus       519 -~vyRQ~~  525 (769)
T TIGR01448       519 -KVYRQAE  525 (769)
T ss_pred             -CEEEECC
T ss_conf             -1124113


No 77 
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=96.70  E-value=0.015  Score=36.24  Aligned_cols=118  Identities=16%  Similarity=0.178  Sum_probs=63.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHHH--HHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf             49988888772899999999857811146--8889999-99999999997131122466557807899999961387999
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEKKC--RLHFYEF-MKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC  144 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~--R~HFh~F-M~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC  144 (404)
                      -|.|.|+.|+||+++-...++..+-+.+.  .++...+ -..+...|+-..+..-.+.......+.    +.+ +.-.|+
T Consensus        24 pVLI~GE~GtGK~~lAr~IH~~S~r~~~pfi~vnc~~~~~~~le~~LFG~~~g~f~ga~~~~~G~l----e~A-~gGTL~   98 (168)
T pfam00158        24 TVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTGAVSDRKGLF----ELA-DGGTLF   98 (168)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCE----EEC-CCCEEE
T ss_conf             889989998888999999998524356883125678998779999875876676689875789964----226-998788


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHH-------------HCCCEEEEECCCCHHHHHCCCCCHHH
Q ss_conf             84232047135888999999998-------------54968998178686775238740566
Q gi|254781047|r  145 FDEFMITNIADAIILSRLFAALF-------------SHGCIIVMTSNFIPENLYKDEINRNV  193 (404)
Q Consensus       145 fDEF~V~DiaDAmil~rl~~~lf-------------~~gv~lV~TSN~~P~dLY~~GLqR~~  193 (404)
                      +||..--+..--   .+|+..|-             .-.+.+|+||+..+.++-..|..|+.
T Consensus        99 LdeI~~L~~~~Q---~~Ll~~L~~~~~~~~g~~~~~~~~vRiIast~~~L~~~v~~G~Fr~D  157 (168)
T pfam00158        99 LDEIGELPLELQ---AKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFRED  157 (168)
T ss_pred             CCCHHHCCHHHH---HHHHHHHHCCEEEECCCCCEEEEEEEEEEECCCCHHHHHHCCCCHHH
T ss_conf             024413999999---99999985796997799845888549999659889999883996399


No 78 
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.67  E-value=0.0025  Score=41.19  Aligned_cols=131  Identities=11%  Similarity=0.076  Sum_probs=79.8

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCHHH--HH-----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHC-
Q ss_conf             649988888772899999999857811146--88-----8999999999999997131122466557807899999961-
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKC--RL-----HFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIAL-  138 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~--R~-----HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~-  138 (404)
                      .-+.++|+.|+|||-+.-.+-..+-.....  --     .-+.++..-|..++++.-..........+-+..+++.... 
T Consensus        25 halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~  104 (325)
T COG0470          25 HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSES  104 (325)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf             61003799999789999999999658664334552002244432025688659977321333300699999999860446


Q ss_pred             ----CCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf             ----38799984232047135888999999998549689981786867752387405668989999985050898047
Q gi|254781047|r  139 ----ESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS  212 (404)
Q Consensus       139 ----~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~  212 (404)
                          ..+++.+||-.--....|=.+.+.++.- ...+++|.++| .|..+             +..|+.+|.++.+..
T Consensus       105 ~~~~~~kviiidead~mt~~A~nallk~lEep-~~~~~~il~~n-~~~~i-------------l~tI~SRc~~i~f~~  167 (325)
T COG0470         105 PLEGGYKVVIIDEADKLTEDAANALLKTLEEP-PKNTRFILITN-DPSKI-------------LPTIRSRCQRIRFKP  167 (325)
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHCCCC-CCCEEEEEEEC-CHHHC-------------HHHHHHHEEEEECCC
T ss_conf             56677269997320326988887675433248-88716999749-85556-------------478775607887677


No 79 
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=96.61  E-value=0.0065  Score=38.57  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             499888887728999999998578
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      -+-+||++|+|||-|--++-..+.
T Consensus        52 h~lf~GPPG~GKTTlAriiAk~~~   75 (234)
T pfam05496        52 HVLLYGPPGLGKTTLANIIANEMG   75 (234)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             278878999988899999998408


No 80 
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.61  E-value=0.016  Score=36.00  Aligned_cols=139  Identities=21%  Similarity=0.374  Sum_probs=82.2

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCH-HHHH---HHH------HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf             886499888887728999999998578111-4688---899------999999999999713112246655780789999
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEK-KCRL---HFY------EFMKDVHSRIIMYRKKIEFGEILESDPIPLVAS  134 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~-K~R~---HFh------~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~  134 (404)
                      ..+-|-|.|++|+|||+|-..|-.++-..+ ..|+   -||      +|+..       +|-.. .+-...+-|+..+++
T Consensus       193 tKknvIL~G~pGtGKT~lAk~lA~~l~g~~~~~rv~~VqfhpsysYEDfi~G-------yrp~~-~gf~~~~G~f~~~~~  264 (459)
T PRK11331        193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQG-------YRPNG-VGFRRKDGIFYNFCQ  264 (459)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCC-------CCCCC-CCCEECCCHHHHHHH
T ss_conf             5882796589998878999999999707887784689983588661787646-------05688-861326836999999


Q ss_pred             HHHCC---CCEEEEEEEEECCCHHHHHHHHHHHHHHH--CC---CEEEEECC------CCHHHHHCCCC-C-HHHHHHHH
Q ss_conf             99613---87999842320471358889999999985--49---68998178------68677523874-0-56689899
Q gi|254781047|r  135 SIALE---SRVLCFDEFMITNIADAIILSRLFAALFS--HG---CIIVMTSN------FIPENLYKDEI-N-RNVLVSFI  198 (404)
Q Consensus       135 ~l~~~---~~lLCfDEF~V~DiaDAmil~rl~~~lf~--~g---v~lV~TSN------~~P~dLY~~GL-q-R~~FlPfI  198 (404)
                      +-..+   --++|+||+---+++  -|++.|+.-+=.  +|   .+-..-|+      .-|++||-=|- | -|+=+.++
T Consensus       265 ~A~~~p~~~y~~iideinr~~~~--~~fgel~~liE~dkR~~~~~~~l~ys~~~~~~f~vP~Nl~iigtmNtadrs~~~~  342 (459)
T PRK11331        265 QAKEQPEKKYVFIIDEINRANLS--KVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVV  342 (459)
T ss_pred             HHHHCCCCCEEEEEEHHHCCCHH--HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEECCCCCEEEEEECCCCCHHHHHH
T ss_conf             99849898769998432033889--9999999996412567652256300368885334688659998503341068878


Q ss_pred             H-HHHHCCEEEECCCC
Q ss_conf             9-99850508980473
Q gi|254781047|r  199 E-LLEKKLEIISLDSG  213 (404)
Q Consensus       199 ~-~lk~~~~V~~l~~~  213 (404)
                      + +|.+++.-+++.-+
T Consensus       343 d~alrRrf~f~~~~pd  358 (459)
T PRK11331        343 DYALRRRFSFIDIEPG  358 (459)
T ss_pred             HHHHHHHHCCEECCCC
T ss_conf             9999865021215898


No 81 
>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=96.55  E-value=0.012  Score=36.78  Aligned_cols=76  Identities=12%  Similarity=0.145  Sum_probs=51.8

Q ss_pred             HHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHH------
Q ss_conf             99853788998189878724638999899999998228982899807897880134676531348998988745------
Q gi|254781047|r  294 EIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLYE------  367 (404)
Q Consensus       294 ~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~E------  367 (404)
                      .|++....+|++++-+-+   .--|--.-.|.+.|.++++.|++++..+|++||.  ++-..-.|-.++.=|.+      
T Consensus       122 ~l~~~~~lLCfDEFqV~D---IaDAMIL~rLf~~Lf~~gvvlV~TSN~~P~~LY~--~GLqR~~FlPfI~ll~~~~~v~~  196 (361)
T pfam03969       122 RFANEARLLCFDEFEVDD---IGDAMILGRLFEALFARGVSLVATSNTAPEQLYR--NGLNRQRFLPAIDLLESHFEVVR  196 (361)
T ss_pred             HHHHCCCEEEEEEEEECC---HHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHC--CCCCHHHHHHHHHHHHHHCEEEE
T ss_conf             997258779976356167---8889999999999997797899808999899836--87417788999999998678998


Q ss_pred             HCC-HHHH
Q ss_conf             242-7889
Q gi|254781047|r  368 MFS-AQYI  374 (404)
Q Consensus       368 MqS-~~yl  374 (404)
                      |.| .+|=
T Consensus       197 l~~~~DYR  204 (361)
T pfam03969       197 VDGPVDYR  204 (361)
T ss_pred             ECCCCCCC
T ss_conf             15987805


No 82 
>pfam00931 NB-ARC NB-ARC domain.
Probab=96.52  E-value=0.034  Score=33.97  Aligned_cols=105  Identities=12%  Similarity=0.109  Sum_probs=53.9

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHH----------HHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCHHHHHHH
Q ss_conf             864998888877289999999985781114----------688899999999999999713112246-655780789999
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKK----------CRLHFYEFMKDVHSRIIMYRKKIEFGE-ILESDPIPLVAS  134 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K----------~R~HFh~FM~~ih~~l~~~~~~~~~~~-~~~~dpl~~va~  134 (404)
                      .+=|-|||-.|.|||-|....|+...++..          +..--.+.+..|...+.   ....... ....+....+.+
T Consensus        19 ~~vI~I~G~gGiGKTtLA~~v~~~~~i~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~---~~~~~~~~~~~~~l~~~l~~   95 (285)
T pfam00931        19 LGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTYTEFRLQKDILQELG---LDDSDWVEKNESELAVKIKE   95 (285)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHCCHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHC---CCCCCCCCCCHHHHHHHHHH
T ss_conf             539998899956399999999716556505983899997976668999999999856---66545555789999999999


Q ss_pred             HHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHH--HCCCEEEEECC
Q ss_conf             996138799984232047135888999999998--54968998178
Q gi|254781047|r  135 SIALESRVLCFDEFMITNIADAIILSRLFAALF--SHGCIIVMTSN  178 (404)
Q Consensus       135 ~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf--~~gv~lV~TSN  178 (404)
                      .+.++--||.||     ||-+.-.+..+...+-  ..|-.+|.||-
T Consensus        96 ~L~~kr~LiVLD-----DVw~~~~~~~l~~~~~~~~~gSrIIvTTR  136 (285)
T pfam00931        96 ALLRKRFLLVLD-----DVWEKNDWDKIGVPFPDGENGSRVIVTTR  136 (285)
T ss_pred             HHCCCCEEEEEC-----CCCCHHHHHHHHCCCCCCCCCCEEEEECC
T ss_conf             972796699963-----88878999997345757899827998557


No 83 
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1.  The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia.  Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole.  In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells.  CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.51  E-value=0.013  Score=36.69  Aligned_cols=28  Identities=21%  Similarity=0.355  Sum_probs=22.4

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             8864998888877289999999985781
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      +-.=+=|-|+-|.|||-|+.+....++.
T Consensus        62 ~Ge~vaIVG~sGSGKSTLl~lL~gl~~p   89 (282)
T cd03291          62 KGEMLAITGSTGSGKTSLLMLILGELEP   89 (282)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf             9999999999998199999999578727


No 84 
>pfam05673 DUF815 Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.
Probab=96.50  E-value=0.0044  Score=39.65  Aligned_cols=94  Identities=19%  Similarity=0.247  Sum_probs=56.5

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC--E
Q ss_conf             88649988888772899999999857811146888999999999999997131122466557807899999961387--9
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR--V  142 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~--l  142 (404)
                      |..-+-|||.-|+|||=|..+.......+ ..|+      .||+.       .       .-.-|+.+...+...-.  +
T Consensus        52 pAnnvLLwG~RGtGKSSlVKall~~~~~~-gLrl------IEv~k-------~-------~L~~Lp~i~~~l~~~~~kFI  110 (248)
T pfam05673        52 PANNVLLWGARGTGKSSLVKALLNEYADQ-GLRL------IEVDK-------D-------DLGDLPDIVDLLRGRPYRFI  110 (248)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHHC-CCEE------EEECH-------H-------HHCCHHHHHHHHHCCCCCEE
T ss_conf             86136767689898889999999986314-9569------99878-------8-------87219999999964997579


Q ss_pred             EEEEEE--EECCCHHHHHHHHHHHHHH---HCCCEEEEECCCC
Q ss_conf             998423--2047135888999999998---5496899817868
Q gi|254781047|r  143 LCFDEF--MITNIADAIILSRLFAALF---SHGCIIVMTSNFI  180 (404)
Q Consensus       143 LCfDEF--~V~DiaDAmil~rl~~~lf---~~gv~lV~TSN~~  180 (404)
                      |++|-.  .-.| ++--.|+.+++.=.   -.+|.+.+||||-
T Consensus       111 iF~DDLSFe~~d-~~yk~LKs~LeG~l~~~p~NvliYaTSNRR  152 (248)
T pfam05673       111 LFCDDLSFEEGE-SSYKALKSVLEGGLEARPDNVLIYATSNRR  152 (248)
T ss_pred             EEECCCCCCCCC-HHHHHHHHHHCCCCCCCCCEEEEEEECCCH
T ss_conf             996355767897-369999999657644688738999842700


No 85 
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.37  E-value=0.025  Score=34.82  Aligned_cols=18  Identities=11%  Similarity=0.122  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHCCCCCEEE
Q ss_conf             899999998228982899
Q gi|254781047|r  320 RFIMLIDVFYEHKIGLII  337 (404)
Q Consensus       320 RFI~LID~lYd~kv~Li~  337 (404)
                      .=|++-=+++-+---|++
T Consensus       492 QRiaiARAll~~~~ILIL  509 (588)
T PRK11174        492 QRLALARALLQPCQLLLL  509 (588)
T ss_pred             HHHHHHHHHHCCCCEEEE
T ss_conf             999999998379898999


No 86 
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide-binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36  E-value=0.025  Score=34.85  Aligned_cols=112  Identities=18%  Similarity=0.148  Sum_probs=74.6

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH------HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             649988888772899999999857811146888999------99999999999713112246655780789999996138
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYE------FMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALES  140 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~------FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~  140 (404)
                      .=+-|-|+-|+|||-|+++..-.++... -.+.|..      ...+..+.+-..-+ .    ++..---..+|..++.+.
T Consensus        26 e~~~i~G~nGaGKSTLl~~l~gl~~~~~-G~i~~~g~~~~~~~~~~~~~~i~~v~Q-L----SgGqkqrv~iA~al~~~p   99 (157)
T cd00267          26 EIVALVGPNGSGKSTLLRAIAGLLKPTS-GEILIDGKDIAKLPLEELRRRIGYVPQ-L----SGGQRQRVALARALLLNP   99 (157)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCC-CEEEECCEECCCCCHHHHHHCCCCCCC-C----CHHHHHHHHHHHHHHCCC
T ss_conf             7999987889998999999958847996-289999999997999999940608766-8----869999999999997099


Q ss_pred             CEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf             79998423-204713588899999999854968998178686775
Q gi|254781047|r  141 RVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL  184 (404)
Q Consensus       141 ~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL  184 (404)
                      ++|++||- -=-|+..+-.+..++..+-+.|..+|.+|-...+-.
T Consensus       100 ~ililDEPtsgLD~~~~~~l~~~i~~l~~~g~tii~vtH~~~~~~  144 (157)
T cd00267         100 DLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE  144 (157)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf             999996987668999999999999999968999999908999999


No 87 
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.35  E-value=0.0055  Score=39.03  Aligned_cols=134  Identities=19%  Similarity=0.297  Sum_probs=81.0

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC--
Q ss_conf             688649988888772899999999857811146888999999999999997131122466557807899999961387--
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR--  141 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~--  141 (404)
                      .-|+|+-|.|++|+|||+|--.--..+.++-. .+--.+|     -+|+--.+.     +.        +.++..+++  
T Consensus       181 kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf-~iSGS~F-----VemfVGvGA-----sR--------VRdLF~qAkk~  241 (596)
T COG0465         181 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFF-SISGSDF-----VEMFVGVGA-----SR--------VRDLFEQAKKN  241 (596)
T ss_pred             CCCCCEEEECCCCCCCHHHHHHHHCCCCCCCE-ECCCHHH-----HHHHCCCCC-----HH--------HHHHHHHHHCC
T ss_conf             34565268559998727899998454689835-3034446-----443147883-----88--------89999985515


Q ss_pred             ---EEEEEEEEECCCHHHH-------------HHHHHHHHH--HH--CCCEEEEECCCC----HHHHHCCCCCHHHHHH-
Q ss_conf             ---9998423204713588-------------899999999--85--496899817868----6775238740566898-
Q gi|254781047|r  142 ---VLCFDEFMITNIADAI-------------ILSRLFAAL--FS--HGCIIVMTSNFI----PENLYKDEINRNVLVS-  196 (404)
Q Consensus       142 ---lLCfDEF~V~DiaDAm-------------il~rl~~~l--f~--~gv~lV~TSN~~----P~dLY~~GLqR~~FlP-  196 (404)
                         ++++||-.  -|+..-             -|..|+..+  |.  .||++++-.||+    |.-|.++..-|+-.++ 
T Consensus       242 aP~IIFIDEiD--AvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~  319 (596)
T COG0465         242 APCIIFIDEID--AVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVEL  319 (596)
T ss_pred             CCCEEEEEHHH--HCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHCCCCCCCEEEECCC
T ss_conf             99669876343--3145457788998069999998888520157888754885267874333176528877662554478


Q ss_pred             -HHH----HHHHCCEEEECCCCCHHHH
Q ss_conf             -999----9985050898047311221
Q gi|254781047|r  197 -FIE----LLEKKLEIISLDSGQDYRR  218 (404)
Q Consensus       197 -fI~----~lk~~~~V~~l~~~~DYR~  218 (404)
                       -|.    +++-|..-..++..+|+..
T Consensus       320 PDi~gRe~IlkvH~~~~~l~~~V~l~~  346 (596)
T COG0465         320 PDIKGREQILKVHAKNKPLAEDVDLKK  346 (596)
T ss_pred             CCHHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf             515657888788641577776678889


No 88 
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.27  E-value=0.051  Score=32.88  Aligned_cols=26  Identities=35%  Similarity=0.653  Sum_probs=22.0

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             64998888877289999999985781
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      .=+-|-|+-|+|||-||.+....++.
T Consensus        29 ei~~l~G~NGaGKTTLlk~i~Gl~~p   54 (206)
T PRK13539         29 EALVLTGPNGSGKTTLLRLLAGLLPP   54 (206)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf             49999899999899999999588788


No 89 
>TIGR00362 DnaA chromosomal replication initiator protein DnaA; InterPro: IPR001957   The bacterial dnaA protein , ,  plays an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC).   DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) .; GO: 0003677 DNA binding, 0003688 DNA replication origin binding, 0005524 ATP binding, 0006270 DNA replication initiation, 0006275 regulation of DNA replication.
Probab=96.26  E-value=0.02  Score=35.45  Aligned_cols=135  Identities=19%  Similarity=0.157  Sum_probs=84.0

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             88649988888772899999999857811----14688899999999999999713112246655780789999996138
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIE----KKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALES  140 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~----~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~  140 (404)
                      +..-+++|||+|.|||++|...-+..-..    +-..+|-..|+.+.-..+....             +.. -+..-..+
T Consensus       180 ~~~p~~~~gg~glg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~  245 (493)
T TIGR00362       180 AYNPLFLYGGTGLGKTHLLHAIGNGVLELHPNAKVLYVTSENFLNDFVKALRDNK-------------LDD-FKKKYRSL  245 (493)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHH-------------HHH-HHHHHHHC
T ss_conf             6562477447542156787776434443067732788501467899998752001-------------688-88876311


Q ss_pred             CEEEEEEEEECC--CHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH----------CCCCC----HHHHHHHHHHHHHC
Q ss_conf             799984232047--135888999999998549689981786867752----------38740----56689899999850
Q gi|254781047|r  141 RVLCFDEFMITN--IADAIILSRLFAALFSHGCIIVMTSNFIPENLY----------KDEIN----RNVLVSFIELLEKK  204 (404)
Q Consensus       141 ~lLCfDEF~V~D--iaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY----------~~GLq----R~~FlPfI~~lk~~  204 (404)
                      +.+.+|+.+..-  -...--+-..|..+...+--+|.||.+.|.++-          .-|+.    ...+..-+.++++.
T Consensus       246 d~~l~dd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~p~~~~~~~~~l~~~~~~g~~~~~~~p~~~~~~~~~~~~  325 (493)
T TIGR00362       246 DFLLIDDIQFLAGKEKTQEEFFHTFNALHEDGKQIVLTSDRSPKEIPGLEDRLKSRFGWGLTADIEPPDLETRLAILKKK  325 (493)
T ss_pred             CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHH
T ss_conf             12311104764135203688888888774068527885166620100046777654301410002465235789998865


Q ss_pred             CEEEECCCC
Q ss_conf             508980473
Q gi|254781047|r  205 LEIISLDSG  213 (404)
Q Consensus       205 ~~V~~l~~~  213 (404)
                      |+...++-+
T Consensus       326 ~~~~~~~~p  334 (493)
T TIGR00362       326 AEEDGINLP  334 (493)
T ss_pred             HHHCCCCCH
T ss_conf             443035652


No 90 
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.23  E-value=0.007  Score=38.35  Aligned_cols=95  Identities=18%  Similarity=0.177  Sum_probs=59.4

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC--CE
Q ss_conf             8864998888877289999999985781114688899999999999999713112246655780789999996138--79
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALES--RV  142 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~--~l  142 (404)
                      +-+-+.|||.=|+|||=|..+.+.....+. .|      ..|||..=              -.-|+.+...|...-  =+
T Consensus        84 pANnVLLwGaRGtGKSSLVKA~~~e~~~~g-lr------LVEV~k~d--------------l~~Lp~l~~~Lr~~~~kFI  142 (287)
T COG2607          84 PANNVLLWGARGTGKSSLVKALLNEYADEG-LR------LVEVDKED--------------LATLPDLVELLRARPEKFI  142 (287)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHHCC-CE------EEEECHHH--------------HHHHHHHHHHHHCCCCEEE
T ss_conf             652367763777774799999999987417-70------79976888--------------8657999999961886089


Q ss_pred             EEEEEEE-ECCCHHHHHHHHHHHHHHH---CCCEEEEECCCC
Q ss_conf             9984232-0471358889999999985---496899817868
Q gi|254781047|r  143 LCFDEFM-ITNIADAIILSRLFAALFS---HGCIIVMTSNFI  180 (404)
Q Consensus       143 LCfDEF~-V~DiaDAmil~rl~~~lf~---~gv~lV~TSN~~  180 (404)
                      |+.|.+- =++=...--|+..++.=..   .+|++.+||||-
T Consensus       143 lFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRR  184 (287)
T COG2607         143 LFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRR  184 (287)
T ss_pred             EEECCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCC
T ss_conf             995677777781389999998538855688707999715875


No 91 
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.18  E-value=0.018  Score=35.80  Aligned_cols=113  Identities=16%  Similarity=0.105  Sum_probs=52.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHHHHH-------HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHC--
Q ss_conf             4998888877289999999985781114688-------8999999999999997131122466557807899999961--
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRL-------HFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIAL--  138 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~-------HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~--  138 (404)
                      -+||||+.|+|||..+....+.+..+.....       +... +-.|-.++...-+.....+....+-+..+.+.+.+  
T Consensus        44 n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t-~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~  122 (366)
T COG1474          44 NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRT-PYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKG  122 (366)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC-HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             079988999873289999999997331567579995130787-8799999999826899767632689999999777418


Q ss_pred             CCCEEEEEEEEECCCHHHHHHHHHHHHHH--HCCCEEEEECCCCH
Q ss_conf             38799984232047135888999999998--54968998178686
Q gi|254781047|r  139 ESRVLCFDEFMITNIADAIILSRLFAALF--SHGCIIVMTSNFIP  181 (404)
Q Consensus       139 ~~~lLCfDEF~V~DiaDAmil~rl~~~lf--~~gv~lV~TSN~~P  181 (404)
                      ..-++-+||+.---=.+..+|-.|+..--  ..++.+|+.||...
T Consensus       123 ~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~  167 (366)
T COG1474         123 KTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDK  167 (366)
T ss_pred             CEEEEEECCHHHHHCCCCCHHHHEECCCCCCCEEEEEEEEECCHH
T ss_conf             759999764765415464145511124776753799999735488


No 92 
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.  This family is also known as MRP (mulrtidrug resisitance-associated protein).  Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear.  The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed.  MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.10  E-value=0.04  Score=33.57  Aligned_cols=25  Identities=36%  Similarity=0.576  Sum_probs=21.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             4998888877289999999985781
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      =+-|-|+-|+|||-|+.+.....+.
T Consensus        32 ~v~ivG~sGsGKSTLl~ll~gl~~p   56 (221)
T cd03244          32 KVGIVGRTGSGKSSLLLALFRLVEL   56 (221)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf             9999999999899999999679718


No 93 
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.09  E-value=0.021  Score=35.30  Aligned_cols=181  Identities=18%  Similarity=0.186  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             99999999999999986135433322566431024666666886499888887728999999998578111468889999
Q gi|254781047|r   24 AQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEF  103 (404)
Q Consensus        24 ~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~F  103 (404)
                      .|.++.+.|+-.-..=                    +....++-=+-||||+|-|||-|-..--+-+..+  .|+     
T Consensus         8 GQ~~vk~~L~l~I~AA--------------------k~R~e~LDH~LL~GPPGLGKTTLA~IiA~Emg~~--l~i-----   60 (305)
T TIGR00635         8 GQEKVKEQLQLFIEAA--------------------KMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--LKI-----   60 (305)
T ss_pred             CCHHHHHHHHHHHHHH--------------------HHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC--CEE-----
T ss_conf             8288999999999999--------------------8248973416631756874678999999983893--267-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf             99999999997131122466557807899999961387999842320471358889999999985496899817868677
Q gi|254781047|r  104 MKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPEN  183 (404)
Q Consensus       104 M~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~d  183 (404)
                                   ..+..-.+.+|-+..+.  -.++.+|||+||-|=        |++..+.+                 
T Consensus        61 -------------TsGP~L~kPgDlaaiLt--~L~~gDVLFIDEIHR--------L~p~~EE~-----------------  100 (305)
T TIGR00635        61 -------------TSGPALEKPGDLAAILT--NLEEGDVLFIDEIHR--------LSPAIEEL-----------------  100 (305)
T ss_pred             -------------EECCCCCCHHHHHHHHH--HCCCCCEEECCHHHH--------CCHHHHHH-----------------
T ss_conf             -------------40675547578999997--056896310125650--------48334531-----------------


Q ss_pred             HHCCCCCHHHHHHHHHHHHHCCEEEECCC----CCHHHHCCC-----------CCCCEEEEC----------CCHHHHHH
Q ss_conf             52387405668989999985050898047----311221123-----------678302203----------53022689
Q gi|254781047|r  184 LYKDEINRNVLVSFIELLEKKLEIISLDS----GQDYRRKEQ-----------SILPIYMTP----------LNSYNRVL  238 (404)
Q Consensus       184 LY~~GLqR~~FlPfI~~lk~~~~V~~l~~----~~DYR~~~~-----------~~~~~y~~p----------~~~~~~~~  238 (404)
                      ||.=                 |+-+.||-    |-==|...+           +..+.--.|          .+=.+.++
T Consensus       101 LYpA-----------------MEDF~lDi~IG~Gp~Ar~v~ldLpPFTLvGATTR~G~lt~PLrdRFG~~~rl~fY~~~E  163 (305)
T TIGR00635       101 LYPA-----------------MEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTPEE  163 (305)
T ss_pred             CCCC-----------------CCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHH
T ss_conf             0530-----------------01217877871289852576068694420000347741031334544745402689878


Q ss_pred             HHHHHHHHCCC--CCCCCCCEEEECCEEEEECCCCCCCCCC--CHHHHHHHHCC
Q ss_conf             99999986044--4467763276368089961220211110--19998521024
Q gi|254781047|r  239 MDKLWAHITKG--KKSLSLNISTEGGYEIHVPFFCSRVSRF--SFFDLCDRPLS  288 (404)
Q Consensus       239 l~~~f~~l~~~--~~~~~~~i~v~~gR~i~v~~~~~~va~f--~F~eLC~~~lg  288 (404)
                      +.++..+-++-  -+-.+.....+..|+=-.|+.++..++-  ||.+..++..=
T Consensus       164 L~~Iv~R~A~~L~~ei~~~~a~~IArrSRGTPRIAnRLLRRVRDfA~V~~~~~I  217 (305)
T TIGR00635       164 LAEIVSRSAGLLNIEIEQEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQGVI  217 (305)
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             999987533441430077899999875478637888776766448887267873


No 94 
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.04  E-value=0.13  Score=30.23  Aligned_cols=38  Identities=16%  Similarity=0.223  Sum_probs=27.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf             48877898999999999999999861354333225664310246666668864998888877289999
Q gi|254781047|r   16 DKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLM   83 (404)
Q Consensus        16 ~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LM   83 (404)
                      .+...+.+.|..++..+...                              .+.+.++++.|.|||..+
T Consensus         4 ~~~~~~~~~Q~~~~~~~~~~------------------------------~~~~~i~~~tGsGKT~~~   41 (201)
T smart00487        4 FGFEPLRPYQKEAIEALLSG------------------------------LRDVILAAPTGSGKTLAA   41 (201)
T ss_pred             CCCCCCCHHHHHHHHHHHCC------------------------------CCCEEEECCCCCCHHHHH
T ss_conf             37999998899999999838------------------------------998899899996099999


No 95 
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938    The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=96.02  E-value=0.005  Score=39.27  Aligned_cols=138  Identities=17%  Similarity=0.272  Sum_probs=80.1

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             6688649988888772899999999857811---1468889999999999999971311224665578078999999613
Q gi|254781047|r   63 YCSMQGIYLHGDVGQGKSMLMNLFFALVPIE---KKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALE  139 (404)
Q Consensus        63 ~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~---~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~  139 (404)
                      -.||+|+.|||++|+|||+|-...-......   -+---=|..|.-+-...                  |..+-.+--+.
T Consensus       572 ~~PP~Gvll~GPPGtGktllakava~es~anfi~v~GPe~lskWvGese~~------------------ir~if~~arq~  633 (980)
T TIGR01243       572 IRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKA------------------IREIFRKARQA  633 (980)
T ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHCHHHHH------------------HHHHHHHHHHC
T ss_conf             889973487468986168888877401456467740731223440324799------------------99999986412


Q ss_pred             -CCEEEEEEEEEC-----------CCHHHHHHHHHHHHHH----HCCCEEEEECCCC----HHHHHCCCCCHHHHHHH--
Q ss_conf             -879998423204-----------7135888999999998----5496899817868----67752387405668989--
Q gi|254781047|r  140 -SRVLCFDEFMIT-----------NIADAIILSRLFAALF----SHGCIIVMTSNFI----PENLYKDEINRNVLVSF--  197 (404)
Q Consensus       140 -~~lLCfDEF~V~-----------DiaDAmil~rl~~~lf----~~gv~lV~TSN~~----P~dLY~~GLqR~~FlPf--  197 (404)
                       --+++|||..--           .++| -|+..|+..+=    ..++++|+..|||    |.-|-++-+.|--+.|.  
T Consensus       634 aP~~~f~deidaiaP~rG~~~~~~~vtd-~~~nqll~e~dG~~~~~~vvvi~atnrPdi~dPallrPGr~dr~i~vP~Pd  712 (980)
T TIGR01243       634 APAIIFFDEIDAIAPARGASLDEKGVTD-RIVNQLLTELDGLEELSDVVVIAATNRPDILDPALLRPGRLDRLILVPAPD  712 (980)
T ss_pred             CCEEEEEECHHHHCCCCCCCCCCCCHHH-HHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf             8737873021110541244210010268-999999986404434366589861588742361004887412168605985


Q ss_pred             ----HHHHHHCCEEEECCCCCHHHHC
Q ss_conf             ----9999850508980473112211
Q gi|254781047|r  198 ----IELLEKKLEIISLDSGQDYRRK  219 (404)
Q Consensus       198 ----I~~lk~~~~V~~l~~~~DYR~~  219 (404)
                          .++.|-|..-++|..+.|.+..
T Consensus       713 ~~ar~~ifk~ht~~~~l~~dv~l~~l  738 (980)
T TIGR01243       713 EEARLEIFKIHTRSMPLAEDVDLEEL  738 (980)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf             56767676553111353013438999


No 96 
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938    The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=95.99  E-value=0.0065  Score=38.54  Aligned_cols=123  Identities=18%  Similarity=0.208  Sum_probs=70.9

Q ss_pred             HCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             13543332256643102466666688649988888772899999999857811146888999999999999997131122
Q gi|254781047|r   41 KQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEF  120 (404)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~  120 (404)
                      +-+-+...+|.++.        -.||+|+.|||++|+|||+|-...-+.+...- --+-=-+.|.       ++-|.   
T Consensus       223 elP~~hPe~f~~lG--------iePPkG~ll~GPPGtGktllaka~ane~~a~f-~~inGPeims-------ky~Ge---  283 (980)
T TIGR01243       223 ELPLKHPELFEKLG--------IEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF-IAINGPEIMS-------KYYGE---  283 (980)
T ss_pred             HCCCCCHHHHHHCC--------CCCCCCEEEECCCCCCHHHHHHHHHHHCCCEE-EEECCCHHHH-------HHCCC---
T ss_conf             43575647898618--------89987358755898617899999875305517-8850603443-------31363---


Q ss_pred             CCCCCCCHHHHHHHHHHCCCC-EEEEEEEEECCCH--------HHHH---HHHHHHHHHHCCCEEEEECCCCHHHHHC
Q ss_conf             466557807899999961387-9998423204713--------5888---9999999985496899817868677523
Q gi|254781047|r  121 GEILESDPIPLVASSIALESR-VLCFDEFMITNIA--------DAII---LSRLFAALFSHGCIIVMTSNFIPENLYK  186 (404)
Q Consensus       121 ~~~~~~dpl~~va~~l~~~~~-lLCfDEF~V~Dia--------DAmi---l~rl~~~lf~~gv~lV~TSN~~P~dLY~  186 (404)
                          .+.-|..+-++--.+.. ++++||..---+-        .--+   |-.|+..|-.+|-++|+-..--|+-|-+
T Consensus       284 ----~e~~lr~if~eaeenaP~iifideidaiaPkr~e~~Geve~r~v~qlltlmdGlk~rG~v~viGatnrP~a~dP  357 (980)
T TIGR01243       284 ----SEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGKVIVIGATNRPDALDP  357 (980)
T ss_pred             ----CHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCH
T ss_conf             ----07899999986530587078741211007641000016889999999999740024872899814688500262


No 97 
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.98  E-value=0.14  Score=30.15  Aligned_cols=15  Identities=7%  Similarity=0.067  Sum_probs=5.8

Q ss_pred             CHHHHHHHHHHHHHH
Q ss_conf             302268999999986
Q gi|254781047|r  232 NSYNRVLMDKLWAHI  246 (404)
Q Consensus       232 ~~~~~~~l~~~f~~l  246 (404)
                      +...+..+-++...+
T Consensus       376 SGsGKSTL~~LL~rl  390 (593)
T PRK10790        376 TGSGKSTLASLLMGY  390 (593)
T ss_pred             CCCCHHHHHHHHHHH
T ss_conf             988689999999985


No 98 
>PHA02244 ATPase-like protein
Probab=95.89  E-value=0.073  Score=31.90  Aligned_cols=86  Identities=15%  Similarity=0.243  Sum_probs=51.7

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf             86499888887728999999998578111468889999999999999971311224665578078999999613879998
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCF  145 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCf  145 (404)
                      .--+||||+.|.|||.+..-.-+.+..+    +||   |.-|-++. ++.|-..-....++.|+-    +-.++.-|+.+
T Consensus       119 nipV~L~G~AGsGKt~~A~qIA~aLdl~----FYf---~gAI~~ef-~L~Gf~DAnG~yh~T~f~----kaFk~GGLfLl  186 (383)
T PHA02244        119 NIPVFLKGGAGSGKNHIAEQIAEALDLD----FYF---MNAIMDEF-ELKGFIDANGKFHETPFY----EAFKKGGLFFI  186 (383)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHCCC----CEE---CHHHHHHH-HCCCEECCCCCEECCHHH----HHHHCCCEEEE
T ss_conf             9856997588886348999999985888----244---13230134-301256489967263899----99861887997


Q ss_pred             EEEEECCCHHHHHHHHHHHHH
Q ss_conf             423204713588899999999
Q gi|254781047|r  146 DEFMITNIADAIILSRLFAAL  166 (404)
Q Consensus       146 DEF~V~DiaDAmil~rl~~~l  166 (404)
                      ||.--   +++-.|..|=.+|
T Consensus       187 DEiDA---SnP~aL~~lNaAL  204 (383)
T PHA02244        187 DEIDA---SIPEALIIINSAI  204 (383)
T ss_pred             EHHCC---CCHHHHHHHHHHH
T ss_conf             32004---4879999998998


No 99 
>KOG0728 consensus
Probab=95.88  E-value=0.023  Score=35.10  Aligned_cols=139  Identities=20%  Similarity=0.296  Sum_probs=69.6

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf             68864998888877289999999985781114688899999999999999713112246655780789999996138799
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL  143 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL  143 (404)
                      +.|+|+.|||++|+|||+|--+-++...+.- -|+.=.+..+   ..+    +..    +.----|-..|.+-+  -.+|
T Consensus       179 aQPKGvlLygppgtGktLlaraVahht~c~f-irvsgselvq---k~i----geg----srmvrelfvmareha--psii  244 (404)
T KOG0728         179 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTF-IRVSGSELVQ---KYI----GEG----SRMVRELFVMAREHA--PSII  244 (404)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHCCEEE-EEECHHHHHH---HHH----HHH----HHHHHHHHHHHHHCC--CCEE
T ss_conf             8876048846999756299999875414079-9964499999---985----013----899999999987508--8267


Q ss_pred             EEEEEEECCCH----------HHHHHHHHHHHHH-------HCCCEEEEECCCC----HHHHHCCCCCHHH-HHH-----
Q ss_conf             98423204713----------5888999999998-------5496899817868----6775238740566-898-----
Q gi|254781047|r  144 CFDEFMITNIA----------DAIILSRLFAALF-------SHGCIIVMTSNFI----PENLYKDEINRNV-LVS-----  196 (404)
Q Consensus       144 CfDEF~V~Dia----------DAmil~rl~~~lf-------~~gv~lV~TSN~~----P~dLY~~GLqR~~-FlP-----  196 (404)
                      +.||..  -|+          |.-.-...++-|-       .+++.+|+..||-    |.-|-++.+.|.- |-|     
T Consensus       245 fmdeid--sigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~a  322 (404)
T KOG0728         245 FMDEID--SIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEA  322 (404)
T ss_pred             EEHHCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCHHH
T ss_conf             500001--212343457898638999999999974024000366269984164222468663877545556489987788


Q ss_pred             HHHHHHHCCEEEECCCCCHHHH
Q ss_conf             9999985050898047311221
Q gi|254781047|r  197 FIELLEKKLEIISLDSGQDYRR  218 (404)
Q Consensus       197 fI~~lk~~~~V~~l~~~~DYR~  218 (404)
                      -.++|+-+..-.+|--|.|.|.
T Consensus       323 r~~ilkihsrkmnl~rgi~l~k  344 (404)
T KOG0728         323 RLDILKIHSRKMNLTRGINLRK  344 (404)
T ss_pred             HHHHHHHHHHHHHHHCCCCHHH
T ss_conf             8789988555301330667899


No 100
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.85  E-value=0.16  Score=29.71  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             499888887728999999998578
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      =+=|-|+-|.|||-|+.+.....+
T Consensus        33 i~~liG~NGaGKSTLl~~i~G~~~   56 (237)
T PRK11614         33 IVTLIGANGAGKTTLLGTLCGDPR   56 (237)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             999987999759999999967998


No 101
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2.  A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.80  E-value=0.048  Score=33.02  Aligned_cols=26  Identities=35%  Similarity=0.521  Sum_probs=21.8

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             86499888887728999999998578
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      ..=+-|-|+.|+|||-|++++....+
T Consensus        30 G~~v~ivG~sGsGKSTLl~ll~gl~~   55 (220)
T cd03245          30 GEKVAIIGRVGSGKSTLLKLLAGLYK   55 (220)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             99999999999859999999967254


No 102
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.77  E-value=0.11  Score=30.81  Aligned_cols=19  Identities=16%  Similarity=0.224  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHCCCCCEEE
Q ss_conf             9899999998228982899
Q gi|254781047|r  319 KRFIMLIDVFYEHKIGLII  337 (404)
Q Consensus       319 rRFI~LID~lYd~kv~Li~  337 (404)
                      |.=|.+.=++|-+.--|++
T Consensus       485 rQRialARall~~~~iliL  503 (581)
T PRK11176        485 RQRIAIARALLRDSPILIL  503 (581)
T ss_pred             HHHHHHHHHHHCCCCEEEE
T ss_conf             9999999999679998998


No 103
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport.  These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2).  No known transmembrane proteins or domains are associated with these proteins.
Probab=95.73  E-value=0.013  Score=36.66  Aligned_cols=108  Identities=14%  Similarity=0.146  Sum_probs=61.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHH-----HHCCC--CHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH--
Q ss_conf             649988888772899999999-----85781--114-68889999999999999971311224665578078999999--
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFF-----ALVPI--EKK-CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI--  136 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy-----~~l~~--~~K-~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l--  136 (404)
                      +-+-|.|+=|.|||-+|...-     .....  +.. ....+-   ..++-.........++    ..--+..++..+  
T Consensus        22 ~~~iItGpN~sGKSt~Lr~i~l~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~lSg----g~~~~~~l~~~l~~   94 (162)
T cd03227          22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIV---AAVSAELIFTRLQLSG----GEKELSALALILAL   94 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCC---HHHEEEEEECCCCCCC----CHHHHHHHHHHHHH
T ss_conf             6899989987757999999999999863267752555427764---0230576641200054----29999999999985


Q ss_pred             --HCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf             --613879998423-204713588899999999854968998178686
Q gi|254781047|r  137 --ALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIP  181 (404)
Q Consensus       137 --~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P  181 (404)
                        ..+..++++||+ .=+|..|+..+...+..+..+|..+|.|+-.+.
T Consensus        95 ~~~~~~~lillDE~~~Gtd~~~~~~l~~~i~~~~~~~~~~i~tTH~~e  142 (162)
T cd03227          95 ASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE  142 (162)
T ss_pred             CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf             424898489963655799988999999999999976998999797399


No 104
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.70  E-value=0.011  Score=37.13  Aligned_cols=113  Identities=20%  Similarity=0.197  Sum_probs=60.9

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH--HCCCCEE
Q ss_conf             86499888887728999999998578111468889999999999999971311224665578078999999--6138799
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI--ALESRVL  143 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l--~~~~~lL  143 (404)
                      .-..-+||++|+|||-|-.+.-.....      +|..|=. +-+.....|.           .++. |++.  .....||
T Consensus        48 l~SmIl~GPPG~GKTTlA~liA~~~~~------~f~~~sA-v~~gvkdlr~-----------i~e~-a~~~~~~gr~tiL  108 (436)
T COG2256          48 LHSMILWGPPGTGKTTLARLIAGTTNA------AFEALSA-VTSGVKDLRE-----------IIEE-ARKNRLLGRRTIL  108 (436)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCC------CEEEECC-CCCCHHHHHH-----------HHHH-HHHHHHCCCCEEE
T ss_conf             860577789998888999999876177------6699515-2346799999-----------9999-9998725883499


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf             984232047135888999999998549689981786867752387405668989999985050898047
Q gi|254781047|r  144 CFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS  212 (404)
Q Consensus       144 CfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~  212 (404)
                      ++||.|=-|=+--..   |+..+=+.-|++|.++---|.==    |        -..|..+|.|+.|..
T Consensus       109 flDEIHRfnK~QQD~---lLp~vE~G~iilIGATTENPsF~----l--------n~ALlSR~~vf~lk~  162 (436)
T COG2256         109 FLDEIHRFNKAQQDA---LLPHVENGTIILIGATTENPSFE----L--------NPALLSRARVFELKP  162 (436)
T ss_pred             EEEHHHHCCHHHHHH---HHHHHCCCEEEEEECCCCCCCEE----E--------CHHHHHHHHEEEEEC
T ss_conf             872253337445655---10332488689996267898714----0--------388861104156516


No 105
>PRK05642 DNA replication initiation factor; Validated
Probab=95.68  E-value=0.076  Score=31.78  Aligned_cols=70  Identities=16%  Similarity=0.367  Sum_probs=53.6

Q ss_pred             HHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             9999853788998189878724638999899999998228982899807897880134676531348998988745242
Q gi|254781047|r  292 FVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLYEMFS  370 (404)
Q Consensus       292 Yi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~EMqS  370 (404)
                      .+.=-+.++.++|+||..+.... +...-|-+++..+++.+.+|+++|..+|.++-        +...+=.|||.=+.+
T Consensus        91 ~~~~l~~~d~l~IDDi~~i~g~~-~~e~~lF~l~N~~~~~~~~llits~~~P~~l~--------~~l~DL~SRl~~~~~  160 (234)
T PRK05642         91 LLDNLEQYELVCIDDLDVIAGKA-DWEEALFHLFNRLRDSGRRLLLAASKSPRELP--------VKLPDLKSRLTLALV  160 (234)
T ss_pred             HHHHHHHCCEEEEECHHHHCCCH-HHHHHHHHHHHHHHHCCCEEEEECCCCHHHHC--------CCHHHHHHHHHCCCE
T ss_conf             98624227989893645546885-99999999999999839959995787955523--------001679999957812


No 106
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.68  E-value=0.08  Score=31.64  Aligned_cols=81  Identities=20%  Similarity=0.303  Sum_probs=61.3

Q ss_pred             HCCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             02468999998537889981898787246389998999999982289828998078978801346765313489989887
Q gi|254781047|r  286 PLSANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRL  365 (404)
Q Consensus       286 ~lg~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL  365 (404)
                      .....++..--+..+.++|+||.-+.. ..-..--|-+.++.||+++..++++++.+|.+|   .+.+     +|-.||+
T Consensus       196 ~~~~~~Fr~~yr~~DvLliDDiqfl~g-k~~tqeeff~~fn~l~~~~kqiv~tsd~~P~~l---~~l~-----~rL~SRf  266 (447)
T PRK00149        196 NNAMEEFKEKYRSVDVLLIDDIQFLAG-KEKTQEEFFHTFNALHENNKQIVITSDRPPKEL---EGLE-----DRLRSRF  266 (447)
T ss_pred             CCCHHHHHHHHHCCCEEEECHHHHHHC-CHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHC---CCCC-----HHHHHHH
T ss_conf             186999999997288543214888605-577999999999999984996899578896765---6511-----7788676


Q ss_pred             H-----HHCCHHHHH
Q ss_conf             4-----524278897
Q gi|254781047|r  366 Y-----EMFSAQYIG  375 (404)
Q Consensus       366 ~-----EMqS~~yl~  375 (404)
                      .     +++.+++=.
T Consensus       267 ~~Gl~~~i~~Pd~e~  281 (447)
T PRK00149        267 EWGLTVDIEPPDLET  281 (447)
T ss_pred             HCCEEEECCCCCHHH
T ss_conf             376265105999999


No 107
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter.  The CCM family is involved in bacterial cytochrome c biogenesis.  Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH).  CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH.  The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.66  E-value=0.13  Score=30.31  Aligned_cols=27  Identities=26%  Similarity=0.502  Sum_probs=22.7

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             864998888877289999999985781
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      -.=+.|-|+-|+|||-|+.+.-.-++.
T Consensus        26 Ge~~~l~G~NGsGKSTLlk~i~Gl~~p   52 (201)
T cd03231          26 GEALQVTGPNGSGKTTLLRILAGLSPP   52 (201)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf             959999999999999999999667788


No 108
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes.  This PDR subfamily represents domain I of its (ABC-IM)2 organization.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.65  E-value=0.081  Score=31.61  Aligned_cols=112  Identities=18%  Similarity=0.205  Sum_probs=66.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCC---CC-----------H--HHHHHH------HHHHHHHHHHHHH---HHCCCCCCC
Q ss_conf             499888887728999999998578---11-----------1--468889------9999999999999---713112246
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVP---IE-----------K--KCRLHF------YEFMKDVHSRIIM---YRKKIEFGE  122 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~---~~-----------~--K~R~HF------h~FM~~ih~~l~~---~~~~~~~~~  122 (404)
                      =+-|-|+-|.|||-||++......   .+           .  ++++-|      |.....|.+.+.-   .++ .+.+ 
T Consensus        35 ~~~llGpnGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~igyv~q~~~~~~~~tv~e~l~~~~~l~~-LS~g-  112 (192)
T cd03232          35 LTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRG-LSVE-  112 (192)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEECCHHHHHHEEEEECCHHCCCCCHHHHHHHHHHHHHC-CCHH-
T ss_conf             99999999998899999983798788317899987827667756227999411330734549999986677733-7976-


Q ss_pred             CCCCCHHHHHHHHHHCCCCEEEEEEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf             6557807899999961387999842320-4713588899999999854968998178686775
Q gi|254781047|r  123 ILESDPIPLVASSIALESRVLCFDEFMI-TNIADAIILSRLFAALFSHGCIIVMTSNFIPENL  184 (404)
Q Consensus       123 ~~~~dpl~~va~~l~~~~~lLCfDEF~V-~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL  184 (404)
                         .---..+|..++.+-++|++||=-- -|+.....+-+++..+-+.|.++|+|+-.+-+++
T Consensus       113 ---qrqrv~iA~aL~~~P~lllLDEPt~gLD~~~~~~i~~~l~~l~~~g~tiii~th~~~~~i  172 (192)
T cd03232         113 ---QRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASI  172 (192)
T ss_pred             ---HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
T ss_conf             ---765899999984499889984887688989999999999999969999999983637999


No 109
>KOG2028 consensus
Probab=95.65  E-value=0.016  Score=36.13  Aligned_cols=117  Identities=18%  Similarity=0.229  Sum_probs=55.6

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH--HHHHCCCC
Q ss_conf             6886499888887728999999998578111468889999999999999971311224665578078999--99961387
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVA--SSIALESR  141 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va--~~l~~~~~  141 (404)
                      ..+..+-+||++|+|||-|-.+.-.+.....   .-|    .++-.    ...+   .. -..|.++..-  +.+.+.-.
T Consensus       160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S---yrf----velSA----t~a~---t~-dvR~ife~aq~~~~l~krkT  224 (554)
T KOG2028         160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS---YRF----VELSA----TNAK---TN-DVRDIFEQAQNEKSLTKRKT  224 (554)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHCCCCC---EEE----EEEEC----CCCC---HH-HHHHHHHHHHHHHHHHCCEE
T ss_conf             8887058866998765889999986057774---279----99741----4566---18-89999999887876524406


Q ss_pred             EEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEE-ECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf             9998423204713588899999999854968998-178686775238740566898999998505089804
Q gi|254781047|r  142 VLCFDEFMITNIADAIILSRLFAALFSHGCIIVM-TSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD  211 (404)
Q Consensus       142 lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~-TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~  211 (404)
                      +|++||.|-.+-+--=    +|--..+.|.++.+ ..--.|.       .+     -+..|-.+|.|+-|+
T Consensus       225 ilFiDEiHRFNksQQD----~fLP~VE~G~I~lIGATTENPS-------Fq-----ln~aLlSRC~VfvLe  279 (554)
T KOG2028         225 ILFIDEIHRFNKSQQD----TFLPHVENGDITLIGATTENPS-------FQ-----LNAALLSRCRVFVLE  279 (554)
T ss_pred             EEEEHHHHHHHHHHHH----CCCCEECCCCEEEEECCCCCCC-------CC-----HHHHHHHCCCEEEEC
T ss_conf             9873776553232110----0342130670699853668976-------01-----127787316066733


No 110
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules.  Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells.  Subsequently, virus-infected or malignantly transformed cells can be eliminated.  TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.64  E-value=0.056  Score=32.63  Aligned_cols=26  Identities=27%  Similarity=0.305  Sum_probs=21.7

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             64998888877289999999985781
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      +=+=|-|+-|+|||-|+.+...-.+.
T Consensus        41 e~vaIvG~sGsGKSTL~~ll~gl~~p   66 (226)
T cd03248          41 EVTALVGPSGSGKSTVVALLENFYQP   66 (226)
T ss_pred             CEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf             99999999998499999999645467


No 111
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.62  E-value=0.2  Score=29.13  Aligned_cols=114  Identities=17%  Similarity=0.048  Sum_probs=61.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCC-HH-----------------------HHHHHHHHH-----HHHHHHHHHHH---
Q ss_conf             49988888772899999999857811-14-----------------------688899999-----99999999971---
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIE-KK-----------------------CRLHFYEFM-----KDVHSRIIMYR---  115 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~-~K-----------------------~R~HFh~FM-----~~ih~~l~~~~---  115 (404)
                      =+=|-|+=|.|||-|+.+....++.. .+                       --+.|....     .++.+...++-   
T Consensus        52 ivgllG~NGaGKSTLlk~I~Gl~~P~~G~I~~~G~i~~~~~~~~l~~~lt~~eni~~~~~~~g~~~~~~~~~~~~~le~~  131 (264)
T PRK13546         52 VIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFS  131 (264)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEEEECCCCCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             99999899861999999996798888747999988748850356574430001588899872424999999999999851


Q ss_pred             ------CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf             ------311224665578078999999613879998423-204713588899999999854968998178686
Q gi|254781047|r  116 ------KKIEFGEILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIP  181 (404)
Q Consensus       116 ------~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P  181 (404)
                            .+.-..-++..---..+|..++.+-++|.+||- -.-|+..+--+-.++..+-++|.++|.+|....
T Consensus       132 ~l~~~~~~~~~~LSgGqkqrl~lA~al~~~P~iLiLDEPts~LD~~~~~~i~~~i~~l~~~g~TiilvSH~l~  204 (264)
T PRK13546        132 ELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG  204 (264)
T ss_pred             CCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf             2055651755347999999999999995699999995987548999999999999999968989999848789


No 112
>KOG0726 consensus
Probab=95.60  E-value=0.01  Score=37.26  Aligned_cols=71  Identities=24%  Similarity=0.276  Sum_probs=40.9

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHHCCCCE
Q ss_conf             688649988888772899999999857811146888999999999999997-1311224665578078999999613879
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMY-RKKIEFGEILESDPIPLVASSIALESRV  142 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~-~~~~~~~~~~~~dpl~~va~~l~~~~~l  142 (404)
                      .||+|+-|||.+|+|||+|-.+--++...         .|..-+-++|-+- -+.   + +.----|-.||.+-+-  .+
T Consensus       217 kpPKGVIlyG~PGTGKTLLAKAVANqTSA---------TFlRvvGseLiQkylGd---G-pklvRqlF~vA~e~ap--SI  281 (440)
T KOG0726         217 KPPKGVILYGEPGTGKTLLAKAVANQTSA---------TFLRVVGSELIQKYLGD---G-PKLVRELFRVAEEHAP--SI  281 (440)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCCH---------HHHHHHHHHHHHHHHCC---C-HHHHHHHHHHHHHCCC--CE
T ss_conf             99970588679997536888877245521---------24556508999987365---5-1999999988875298--26


Q ss_pred             EEEEEEE
Q ss_conf             9984232
Q gi|254781047|r  143 LCFDEFM  149 (404)
Q Consensus       143 LCfDEF~  149 (404)
                      .|+||..
T Consensus       282 vFiDEId  288 (440)
T KOG0726         282 VFIDEID  288 (440)
T ss_pred             EEEEHHH
T ss_conf             9864001


No 113
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.58  E-value=0.062  Score=32.35  Aligned_cols=126  Identities=17%  Similarity=0.145  Sum_probs=67.3

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHH--HHHHHH-HHHHHHHHHC-CCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             6886499888887728999999998578111468889--999999-9999999713-11224665578078999999613
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHF--YEFMKD-VHSRIIMYRK-KIEFGEILESDPIPLVASSIALE  139 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HF--h~FM~~-ih~~l~~~~~-~~~~~~~~~~dpl~~va~~l~~~  139 (404)
                      .+..-|-|+|+.|+||+.+-...++..+-+.+.=+..  .....+ +-++|+...+ ...+.... ...+-    +.++ 
T Consensus       159 ~~~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfi~vnC~~~~~~~~e~eLFG~~~gaf~ga~~~-~~g~~----e~a~-  232 (469)
T PRK10923        159 RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTI-RQGRF----EQAD-  232 (469)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCC-CCCCH----HHCC-
T ss_conf             88997899898982699999999974887799957876788997789999708766787886424-58736----6438-


Q ss_pred             CCEEEEEEEEECCCHHHHHHHHHHHH-H---------HHCCCEEEEECCCCHHHHHCCCCCHHHHH
Q ss_conf             87999842320471358889999999-9---------85496899817868677523874056689
Q gi|254781047|r  140 SRVLCFDEFMITNIADAIILSRLFAA-L---------FSHGCIIVMTSNFIPENLYKDEINRNVLV  195 (404)
Q Consensus       140 ~~lLCfDEF~V~DiaDAmil~rl~~~-l---------f~~gv~lV~TSN~~P~dLY~~GLqR~~Fl  195 (404)
                      .--|++||..--...----|-++++. -         ..-.+.+|+|||..+.++-+.|..|+.+.
T Consensus       233 ~GTLfLdeI~~L~~~~Q~kLl~~L~~~~~~~~g~~~~~~~d~RiIaat~~~L~~~v~~g~Fr~dLy  298 (469)
T PRK10923        233 GGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF  298 (469)
T ss_pred             CCCEEHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCEEEECCEEEEECCCCHHHHHHHCCHHHHHH
T ss_conf             992656636648999999999998559378579985122143799707879999866081779999


No 114
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.57  E-value=0.21  Score=29.02  Aligned_cols=27  Identities=33%  Similarity=0.476  Sum_probs=22.2

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf             649988888772899999999857811
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIE   93 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~   93 (404)
                      .=+-|-|+=|+|||-|+.+.-..++..
T Consensus        28 ~i~~l~G~NGaGKSTLlkli~Gl~~p~   54 (200)
T PRK13540         28 GLLHLKGSNGAGKTTLLKLIAGLLNPE   54 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf             799998899987999999997785889


No 115
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2.  The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia.  Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole.  In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells.  CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.53  E-value=0.074  Score=31.83  Aligned_cols=52  Identities=15%  Similarity=0.326  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHCCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             0789999996138799984232-0471358889999999985496899817868
Q gi|254781047|r  128 PIPLVASSIALESRVLCFDEFM-ITNIADAIILSRLFAALFSHGCIIVMTSNFI  180 (404)
Q Consensus       128 pl~~va~~l~~~~~lLCfDEF~-V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~  180 (404)
                      -...+|..+..+.+||.+||-- =-|+..+..+.+.+..++. +.++|+.|.+.
T Consensus       145 Qrl~lARaLl~~p~IllLDEpTs~LD~~te~~i~~~l~~~~~-~~TvI~itHrl  197 (275)
T cd03289         145 QLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFA-DCTVILSEHRI  197 (275)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCH
T ss_conf             999999999519998999797668999999999999999729-99899994388


No 116
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt   The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export.  Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters.  A typical system is made of a conserved integral membrane and an ABC.  In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.45  E-value=0.2  Score=29.16  Aligned_cols=112  Identities=22%  Similarity=0.251  Sum_probs=56.6

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHH-----------------------HHHHHH--------HHHHHHHHH
Q ss_conf             6499888887728999999998578111468889-----------------------999999--------999999971
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHF-----------------------YEFMKD--------VHSRIIMYR  115 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HF-----------------------h~FM~~--------ih~~l~~~~  115 (404)
                      .=+=|-|+=|.|||-|+.+..--++... -.+.+                       -.|+..        +.+++.++-
T Consensus        49 eivgilG~NGaGKSTLl~~i~Gl~~p~~-G~I~i~G~~~~~~~~~~~~~p~ltv~enl~~~~~~~g~~~~~~~~~~~~~l  127 (224)
T cd03220          49 ERIGLIGRNGAGKSTLLRLLAGIYPPDS-GTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEII  127 (224)
T ss_pred             CEEEEECCCCCHHHHHHHHHHCCCCCCC-CEEEECCEECCCCCCCEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             8999997999819999999975877787-769999898430157420399882999999999982965899999999999


Q ss_pred             CCCCCCC---------CCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             3112246---------65578078999999613879998423-2047135888999999998549689981786
Q gi|254781047|r  116 KKIEFGE---------ILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNF  179 (404)
Q Consensus       116 ~~~~~~~---------~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~  179 (404)
                      ......+         ++.---=..+|..++.+-++|++||= ---|+...--+-+++..+.+.|.++|.+|-.
T Consensus       128 ~~~~L~~~~~~~~~~LSgG~kqRl~iA~al~~~P~illLDEPt~gLD~~~~~~i~~~i~~l~~~g~tiii~sH~  201 (224)
T cd03220         128 EFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHD  201 (224)
T ss_pred             HHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             86367556538665469999999999999966999999918866569999999999999998589999998898


No 117
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.44  E-value=0.036  Score=33.85  Aligned_cols=129  Identities=17%  Similarity=0.194  Sum_probs=70.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf             64998888877289999999985781114688899999999999999713112246655780789999996138799984
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFD  146 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfD  146 (404)
                      .=|-+.|++|+|||=|-...-+++.-+- -|+-.    -.++++ .+.||-+..=-+.-+--|-.--++--..-.|+.+|
T Consensus       350 ~IlclvGpPGvGKTSl~~sIA~al~r~f-~risl----GGv~De-aeirGHrrTYvgampGrii~~l~~a~~~nPv~llD  423 (784)
T PRK10787        350 PILCLVGPPGVGKTSLGQSIAKATGRKY-VRMAL----GGVRDE-AEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLD  423 (784)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEEC----CCCCCH-HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEH
T ss_conf             7799646998772469999999858986-99806----887888-88256433434436838999999748988566500


Q ss_pred             EE------EECCCHHHHHHHHHHH---------HH----HH-CCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCE
Q ss_conf             23------2047135888999999---------99----85-49689981786867752387405668989999985050
Q gi|254781047|r  147 EF------MITNIADAIILSRLFA---------AL----FS-HGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLE  206 (404)
Q Consensus       147 EF------~V~DiaDAmil~rl~~---------~l----f~-~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~  206 (404)
                      |.      +--|+|.||+  .++.         ++    |+ .+|..|+|.|.. +  -+.            -|.++++
T Consensus       424 EiDK~~~~~~Gdp~salL--EvLDpeQN~~F~Dhyl~~~~DlS~v~Fi~TaN~~-~--ip~------------pLlDRmE  486 (784)
T PRK10787        424 EIDKMSSDMRGDPASALL--EVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-N--IPA------------PLLDRME  486 (784)
T ss_pred             HHHHHCCCCCCCHHHHHH--HHCCHHHCCCCCCCEEECCCCHHHEEEEEECCCC-C--CCH------------HHHHHEE
T ss_conf             355522455899889999--8459765564000322046452225899732767-7--876------------7763121


Q ss_pred             EEECCCCCHHHH
Q ss_conf             898047311221
Q gi|254781047|r  207 IISLDSGQDYRR  218 (404)
Q Consensus       207 V~~l~~~~DYR~  218 (404)
                      |+++.|-+..-+
T Consensus       487 ~i~~~gYt~~eK  498 (784)
T PRK10787        487 VIRLSGYTEDEK  498 (784)
T ss_pred             EEEECCCCHHHH
T ss_conf             554116767889


No 118
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.42  E-value=0.031  Score=34.28  Aligned_cols=53  Identities=21%  Similarity=0.266  Sum_probs=41.2

Q ss_pred             HHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf             78999999613879998423-204713588899999999854968998178686
Q gi|254781047|r  129 IPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIP  181 (404)
Q Consensus       129 l~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P  181 (404)
                      --.+|..++.+.+|+++||= -=-|+...-.+.+++..+-+.|.++|.||+...
T Consensus       131 rv~iAral~~~p~llllDEPt~~LD~~~~~~i~~li~~~~~~g~~ili~sH~~~  184 (195)
T PRK13541        131 VVALARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES  184 (195)
T ss_pred             HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf             999999997099999997876559999999999999999839999999837989


No 119
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1.  In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD.  MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.41  E-value=0.061  Score=32.37  Aligned_cols=26  Identities=27%  Similarity=0.354  Sum_probs=21.4

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             86499888887728999999998578
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      -.=+-|-|+.|.|||-|+++.....+
T Consensus        29 G~~iaIvG~sGsGKSTLl~ll~gl~~   54 (238)
T cd03249          29 GKTVALVGSSGCGKSTVVSLLERFYD   54 (238)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf             99999999999989999999823861


No 120
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.40  E-value=0.023  Score=35.05  Aligned_cols=122  Identities=13%  Similarity=0.130  Sum_probs=64.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCHHH--HHHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf             649988888772899999999857811146--888999999-99999999713112246655780789999996138799
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKC--RLHFYEFMK-DVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL  143 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~--R~HFh~FM~-~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL  143 (404)
                      .-|.|.|..|+||+.+--..++..+-..+.  .+....+-. .+...|.-.....-.+..  ....-.+  + ..+.--|
T Consensus        30 ~pVLI~GE~GtGK~~~Ar~IH~~S~r~~~pfi~v~C~~l~~~~~e~~LFG~~~g~~~~~~--~~~~g~l--e-~a~gGTL  104 (325)
T PRK11608         30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQ--KRHPGRF--E-RADGGTL  104 (325)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCC--CCCCCHH--H-CCCCCEE
T ss_conf             998988989837999999999658867999778877989977889987277556767753--2468734--3-5689869


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHH-------------HCCCEEEEECCCCHHHHHCCCCCHHHHHH
Q ss_conf             984232047135888999999998-------------54968998178686775238740566898
Q gi|254781047|r  144 CFDEFMITNIADAIILSRLFAALF-------------SHGCIIVMTSNFIPENLYKDEINRNVLVS  196 (404)
Q Consensus       144 CfDEF~V~DiaDAmil~rl~~~lf-------------~~gv~lV~TSN~~P~dLY~~GLqR~~FlP  196 (404)
                      ++||..--+..   +=.+|+..|-             .-.+.+|+|||..+.++-..|..|+.+.-
T Consensus       105 ~L~eI~~l~~~---~Q~~Ll~~l~~~~~~r~g~~~~~~~~~RiIa~t~~~l~~lv~~g~fr~dLy~  167 (325)
T PRK11608        105 FLDELATAPML---VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD  167 (325)
T ss_pred             EEECHHHCCHH---HHHHHHHHHHCCCEEECCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHH
T ss_conf             97374547999---9999999986490885799876656468871332208999983956799985


No 121
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.38  E-value=0.042  Score=33.38  Aligned_cols=26  Identities=27%  Similarity=0.340  Sum_probs=16.7

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             86499888887728999999998578
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      .--|.|.|..|+||+++--...+..+
T Consensus       348 ~~pVLI~GE~GtGKe~lAraIH~~S~  373 (639)
T PRK11388        348 SFPILLCGEEGVGKALLAQAIHNESE  373 (639)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHCCC
T ss_conf             99689889898109999999995577


No 122
>KOG0741 consensus
Probab=95.37  E-value=0.009  Score=37.66  Aligned_cols=22  Identities=32%  Similarity=0.578  Sum_probs=18.6

Q ss_pred             CCCCEEEEECCCCCCHHHHHHH
Q ss_conf             6886499888887728999999
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNL   85 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdl   85 (404)
                      ...||+.|||++|+|||++---
T Consensus       254 ~HVKGiLLyGPPGTGKTLiARq  275 (744)
T KOG0741         254 KHVKGILLYGPPGTGKTLIARQ  275 (744)
T ss_pred             CCEEEEEEECCCCCCHHHHHHH
T ss_conf             1123578877999870189999


No 123
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=95.36  E-value=0.071  Score=31.96  Aligned_cols=123  Identities=14%  Similarity=0.199  Sum_probs=69.9

Q ss_pred             EEE-ECCCCCCHHHHHHHHHHHCCCCHH--------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH----
Q ss_conf             998-888877289999999985781114--------6888999999999999997131122466557807899999----
Q gi|254781047|r   69 IYL-HGDVGQGKSMLMNLFFALVPIEKK--------CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASS----  135 (404)
Q Consensus        69 lYL-~G~VG~GKT~LMdlFy~~l~~~~K--------~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~----  135 (404)
                      -|| +|+-|+|||-+--.|-.++.+...        ... -..+....|..+.+......   . .-|-+..+.+.    
T Consensus        39 AyLF~GP~GtGKts~ArifAkaLnC~~~~~~~pC~~C~~-C~~i~~g~~~DviEidaas~---~-gVd~IRei~~~~~~~  113 (557)
T PRK07270         39 AYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNNCDI-CRDITNGSLEDVIEIDAASN---N-GVDEIRDIRDKSTYA  113 (557)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHCCCCCCEEEECCCCC---C-CHHHHHHHHHHHCCC
T ss_conf             442108998689999999999957999899998887779-99987589997487347776---7-889999999984238


Q ss_pred             -HHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf             -9613879998423204713588899999999854968998178686775238740566898999998505089804
Q gi|254781047|r  136 -IALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD  211 (404)
Q Consensus       136 -l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~  211 (404)
                       ....++|.-|||.+--..+-+=-|-+.++.-=.+-+++.+|++  |+.|             +..|..+|..++..
T Consensus       114 P~~~~yKV~IIDEah~Ls~~A~NALLKtLEEPP~~~vFIL~Tte--p~kI-------------l~TI~SRCQrf~F~  175 (557)
T PRK07270        114 PSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTE--LHKI-------------PATILSRVQRFEFK  175 (557)
T ss_pred             CCCCCEEEEEECCHHHCCHHHHHHHHHHHHCCCCCEEEEEEECC--HHHC-------------CHHHHHHHHHCCCC
T ss_conf             77788389997144534999999899985289987699998499--4759-------------28887430001088


No 124
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria.  Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.36  E-value=0.058  Score=32.53  Aligned_cols=25  Identities=28%  Similarity=0.583  Sum_probs=20.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             6499888887728999999998578
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      .=+=|-|+.|+|||-|+.++..-++
T Consensus        28 e~v~ivG~sGsGKSTLl~ll~gl~~   52 (236)
T cd03253          28 KKVAIVGPSGSGKSTILRLLFRFYD   52 (236)
T ss_pred             CEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf             9999999999989999999743854


No 125
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK.  ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles.  ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP.  In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.35  E-value=0.17  Score=29.49  Aligned_cols=117  Identities=16%  Similarity=0.250  Sum_probs=60.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCC----------------HHHHH--HHHHHH--------------H--------HH
Q ss_conf             49988888772899999999857811----------------14688--899999--------------9--------99
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIE----------------KKCRL--HFYEFM--------------K--------DV  107 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~----------------~K~R~--HFh~FM--------------~--------~i  107 (404)
                      =+-|.|+=|+|||-|+.+..--.+..                ++|++  =|.++-              .        ++
T Consensus        28 ~~~i~GpSG~GKSTlLr~iaGl~~p~~G~I~~~g~~i~~~~~~~R~ig~VfQ~~~LfP~ltV~eNI~~~l~~~~~~~~e~  107 (213)
T cd03301          28 FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEI  107 (213)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHH
T ss_conf             99999999880999999997699998639999999999999767887899458764654709999998999859998999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCHH---------HHHHHHHHCCCCEEEEEE-EEECCCHHHHHHHHHHHHHHHC-CCEEEEE
Q ss_conf             9999997131122466557807---------899999961387999842-3204713588899999999854-9689981
Q gi|254781047|r  108 HSRIIMYRKKIEFGEILESDPI---------PLVASSIALESRVLCFDE-FMITNIADAIILSRLFAALFSH-GCIIVMT  176 (404)
Q Consensus       108 h~~l~~~~~~~~~~~~~~~dpl---------~~va~~l~~~~~lLCfDE-F~V~DiaDAmil~rl~~~lf~~-gv~lV~T  176 (404)
                      .++..++-...+........|-         -.+|..++.+-++|.+|| |---|..-..-+..++..+.+. |+++|..
T Consensus       108 ~~~v~~~l~~~gl~~~~~~~P~~LSGGqkQRVaiARAl~~~P~lLLlDEP~saLD~~~r~~i~~~l~~~~~~~~~T~i~v  187 (213)
T cd03301         108 DERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYV  187 (213)
T ss_pred             HHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf             99999999875992465099556999999999999998759998998388764298999999999999999749989999


Q ss_pred             CCCCHHHH
Q ss_conf             78686775
Q gi|254781047|r  177 SNFIPENL  184 (404)
Q Consensus       177 SN~~P~dL  184 (404)
                      +--.-+-+
T Consensus       188 THd~~ea~  195 (213)
T cd03301         188 THDQVEAM  195 (213)
T ss_pred             CCCHHHHH
T ss_conf             99989999


No 126
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.34  E-value=0.073  Score=31.88  Aligned_cols=115  Identities=16%  Similarity=0.149  Sum_probs=63.3

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH--HHHH-HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             8864998888877289999999985781114688899--9999-999999997131122466557807899999961387
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY--EFMK-DVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR  141 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh--~FM~-~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~  141 (404)
                      +..-|-|+|..|+||+++-...++..+-+.+-=+..+  ..-. .+-++|+-....       .+..+-    + ..+.-
T Consensus       226 ~d~pVLI~GEsGTGKellAraIH~~S~R~~~pFv~vnC~alp~~l~eseLFG~a~~-------~~~G~f----e-~A~gG  293 (513)
T PRK10820        226 LSAPLLITGDTGTGKDLFAYACHLASPRAKKPYLALNCASIPEDAVESELFGHAPE-------GKKGFF----E-QANGG  293 (513)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCC-------CCCCCE----E-ECCCC
T ss_conf             89988998989824999999999668878998268889989967899986387666-------889755----7-85898


Q ss_pred             EEEEEEEEECCCHHHHHHHHHHHHHHHC-------------CCEEEEECCCCHHHHHCCCCCHHHH
Q ss_conf             9998423204713588899999999854-------------9689981786867752387405668
Q gi|254781047|r  142 VLCFDEFMITNIADAIILSRLFAALFSH-------------GCIIVMTSNFIPENLYKDEINRNVL  194 (404)
Q Consensus       142 lLCfDEF~V~DiaDAmil~rl~~~lf~~-------------gv~lV~TSN~~P~dLY~~GLqR~~F  194 (404)
                      -|++||..--...   +=.+|+..|-+.             .+.+|+|||..+.+|-..|..|+.+
T Consensus       294 TLfLdEI~~l~~~---~Q~kLLr~Lq~~~~~rvG~~~~~~~dvRiIaaT~~dL~~lv~~g~FReDL  356 (513)
T PRK10820        294 SVLLDEIGEMSPR---MQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGLFREDL  356 (513)
T ss_pred             EEEEECHHHCCHH---HHHHHHHHHHCCEEEECCCCCEEEEEEEEEECCCHHHHHHHHCCCCCHHH
T ss_conf             8999783659999---99999999868979965998535677899962653099998729850889


No 127
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis.  The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes.  CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space.  In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.30  E-value=0.054  Score=32.69  Aligned_cols=108  Identities=19%  Similarity=0.190  Sum_probs=51.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHHHHHHH-----------HHCCCCCCCCCCCCHHHH
Q ss_conf             4998888877289999999985781114688899-----999999999999-----------713112246655780789
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY-----EFMKDVHSRIIM-----------YRKKIEFGEILESDPIPL  131 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh-----~FM~~ih~~l~~-----------~~~~~~~~~~~~~dpl~~  131 (404)
                      =+=|-|+.|+|||-|+.+...-++... -++-+.     +.-.++++.+-.           .+.+.+..-++..----.
T Consensus        30 ~~aivG~sGsGKSTLl~~l~G~~~p~~-G~i~i~g~~i~~~~~~~~~~i~~v~Q~~~lf~~ti~~nlg~~LSgGqkqRv~  108 (178)
T cd03247          30 KIALLGRSGSGKSTLLQLLTGDLKPQQ-GEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLA  108 (178)
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCCC-CEEEECCEEHHHHHHHHHHHEEEECCCCCCCCCHHHHHCCCCCCHHHHHHHH
T ss_conf             999999998759999999986176678-8699999988997899997208983556364541998628888999999999


Q ss_pred             HHHHHHCCCCEEEEEEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             9999961387999842320-47135888999999998549689981
Q gi|254781047|r  132 VASSIALESRVLCFDEFMI-TNIADAIILSRLFAALFSHGCIIVMT  176 (404)
Q Consensus       132 va~~l~~~~~lLCfDEF~V-~DiaDAmil~rl~~~lf~~gv~lV~T  176 (404)
                      +|..++.+.++|.+||--. -|......+-+++..+.+...++++|
T Consensus       109 iAral~~~p~ililDEpts~LD~~t~~~i~~~l~~~~~~~Tvi~it  154 (178)
T cd03247         109 LARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWIT  154 (178)
T ss_pred             HHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             9999964979767228655699899999999999983999999980


No 128
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli.  The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane.  HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB.  This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport.  Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.29  E-value=0.071  Score=31.94  Aligned_cols=25  Identities=28%  Similarity=0.360  Sum_probs=20.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             6499888887728999999998578
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      .=+=|-|+.|+|||-|+.+...-.+
T Consensus        29 ~~vaivG~sGsGKSTll~ll~gl~~   53 (237)
T cd03252          29 EVVGIVGRSGSGKSTLTKLIQRFYV   53 (237)
T ss_pred             CEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             9999999999859999999967765


No 129
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.28  E-value=0.087  Score=31.39  Aligned_cols=45  Identities=18%  Similarity=0.234  Sum_probs=21.0

Q ss_pred             HHHHH-HHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             68999-99853788998189878724638999899999998228982899
Q gi|254781047|r  289 ANDFV-EIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLII  337 (404)
Q Consensus       289 ~~DYi-~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~  337 (404)
                      ..|++ .+.+.++|.+=++=-.|+.-    .|.=|.+-=++|-+---|++
T Consensus       450 ~~~~I~~lp~G~dT~vge~G~~LSGG----QrQRialARAll~~p~IliL  495 (585)
T PRK13657        450 ALDFIERKEDGYDTVVGERGRQLSGG----ERQRLAIARALLKDPPILIL  495 (585)
T ss_pred             CHHHHHHCCCCCCCCCCCCCCCCCHH----HHHHHHHHHHHHCCCCEEEE
T ss_conf             27999717566668013788868999----99999999999469898998


No 130
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=95.27  E-value=0.26  Score=28.40  Aligned_cols=139  Identities=16%  Similarity=0.132  Sum_probs=68.7

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCHH-----HH---------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf             8864998888877289999999985781114-----68---------889999999999999971311224665578078
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKK-----CR---------LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIP  130 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K-----~R---------~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~  130 (404)
                      -+.++-|+|+-|-||||+..-|...-|...-     ..         ---.+|...|-..|..--+.     .....-..
T Consensus        60 Rmp~lLlvGdsnnGKT~Iv~rF~~~hp~~~d~~~~~~PVl~vq~P~~p~~~~lY~~IL~~l~aP~~~-----~~~~~~~~  134 (302)
T pfam05621        60 RMPNLLLVGPTNNGKSMIVEKFRRAHPAGSDADQEHIPVLVVQMPSEPSVIRFYVALLAAMGAPLRP-----RPRLPEME  134 (302)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCC-----CCCHHHHH
T ss_conf             8875588707988789999999996799878666702189997699988689999999983787788-----87789999


Q ss_pred             HHHHHHHC--CCCEEEEEEEEECCCHHHHHHHHHHHHHHH----CCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf             99999961--387999842320471358889999999985----496899817868677523874056689899999850
Q gi|254781047|r  131 LVASSIAL--ESRVLCFDEFMITNIADAIILSRLFAALFS----HGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKK  204 (404)
Q Consensus       131 ~va~~l~~--~~~lLCfDEF~V~DiaDAmil~rl~~~lf~----~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~  204 (404)
                      ..+..+.+  +.++|.|||||--=.+.+---..++..|-.    ..|.+|+---..--          +.+-.=..+..+
T Consensus       135 ~~~~~ll~~~~vrmLIIDEiHnlL~Gs~~~qr~~ln~LK~L~Nel~IpiV~vGt~eA~----------~ai~tD~QlasR  204 (302)
T pfam05621       135 QLALALLRKVGVRMLVIDELHNVLAGNSVNRREFLNLLRFLGNELRIPLVGVGTRDAY----------LAIRSDDQLENR  204 (302)
T ss_pred             HHHHHHHHHCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHH----------HHHHCCHHHHHH
T ss_conf             9999999974987899854365604868899999999999863658786995319999----------997068888850


Q ss_pred             CEEEECC---CCCHHHH
Q ss_conf             5089804---7311221
Q gi|254781047|r  205 LEIISLD---SGQDYRR  218 (404)
Q Consensus       205 ~~V~~l~---~~~DYR~  218 (404)
                      ++.+.|.   -+.||+.
T Consensus       205 F~~~~Lp~W~~d~ef~~  221 (302)
T pfam05621       205 FEPMLLPPWEANDDCCS  221 (302)
T ss_pred             CCCCCCCCCCCCCHHHH
T ss_conf             58611688889808999


No 131
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea.  Only very few species lack representatives of the siderophore family transporters.  The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake.  The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA.  The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme.  A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.24  E-value=0.23  Score=28.72  Aligned_cols=111  Identities=22%  Similarity=0.183  Sum_probs=69.6

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCH----------------HHHHHHHHHHHHHHHHHHH-----HHCCCCCCCCCC
Q ss_conf             6499888887728999999998578111----------------4688899999999999999-----713112246655
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIEK----------------KCRLHFYEFMKDVHSRIIM-----YRKKIEFGEILE  125 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~----------------K~R~HFh~FM~~ih~~l~~-----~~~~~~~~~~~~  125 (404)
                      .=+-|-|+-|+|||-||.+.....+...                +.+-.    +..+.+-|..     +.++....-++.
T Consensus        26 e~~~liG~nGsGKTTLl~~i~G~~~~~~G~I~~~g~~i~~~~~~~~~~~----i~~v~Q~l~~~~l~~~~~~~~~~LSGG  101 (180)
T cd03214          26 EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARK----IAYVPQALELLGLAHLADRPFNELSGG  101 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC----CCHHHHHHHHCCCHHHHCCCHHHCCHH
T ss_conf             7999998999889999999957989987289999999896999999554----649999999859977864991037999


Q ss_pred             CCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHH-CCCEEEEECCCCH
Q ss_conf             78078999999613879998423-20471358889999999985-4968998178686
Q gi|254781047|r  126 SDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFS-HGCIIVMTSNFIP  181 (404)
Q Consensus       126 ~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~-~gv~lV~TSN~~P  181 (404)
                      .----.+|..++.+-++|.+||- -=-|+..+.-+-.++..+.+ +|.++|.+|-..+
T Consensus       102 qkQrv~iA~aL~~~P~ililDEPts~LD~~~~~~i~~~i~~l~~~~~~tii~itHdl~  159 (180)
T cd03214         102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN  159 (180)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf             9999999999986896478858754479999999999999999846989999907989


No 132
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein.  In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor.  This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export.  The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD).  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.23  E-value=0.11  Score=30.76  Aligned_cols=27  Identities=26%  Similarity=0.454  Sum_probs=22.2

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             864998888877289999999985781
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      -.=+-|-|+.|+|||-|+.+...-++.
T Consensus        29 Ge~vaivG~sGsGKSTLl~ll~gl~~p   55 (229)
T cd03254          29 GETVAIVGPTGAGKTTLINLLMRFYDP   55 (229)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf             999999999998099999999668667


No 133
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor.  The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids.  RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family.  Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft.  RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%.  The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.22  E-value=0.24  Score=28.55  Aligned_cols=48  Identities=19%  Similarity=0.302  Sum_probs=34.8

Q ss_pred             HHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf             999999613879998423-204713588899999999854968998178
Q gi|254781047|r  131 LVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSN  178 (404)
Q Consensus       131 ~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN  178 (404)
                      .+|..|+.+.++|.+||= ---|+.....+.+++..|-+.|.++|.+|-
T Consensus       149 aIAraL~~~P~iLlLDEPTs~LD~~~~~~v~~li~~L~~~G~Tvi~vtH  197 (255)
T cd03236         149 AIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEH  197 (255)
T ss_pred             HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             9999736899999997987658999999999999999978999999907


No 134
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.20  E-value=0.12  Score=30.52  Aligned_cols=74  Identities=19%  Similarity=0.174  Sum_probs=41.4

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf             68864998888877289999999985781114688899999999999999713112246655780789999996138799
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL  143 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL  143 (404)
                      .+.--+.+||++|.|||-|-...-..+...-                    +...+..-.+..|-...+  .-.++.+||
T Consensus        50 e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~--------------------k~tsGp~leK~gDlaaiL--t~Le~~DVL  107 (332)
T COG2255          50 EALDHVLLFGPPGLGKTTLAHIIANELGVNL--------------------KITSGPALEKPGDLAAIL--TNLEEGDVL  107 (332)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCE--------------------EECCCCCCCCHHHHHHHH--HCCCCCCEE
T ss_conf             8767478647998768889999999856773--------------------763662015726599998--639867767


Q ss_pred             EEEEEEECCCHHHHHH
Q ss_conf             9842320471358889
Q gi|254781047|r  144 CFDEFMITNIADAIIL  159 (404)
Q Consensus       144 CfDEF~V~DiaDAmil  159 (404)
                      |+||.|--..+--=+|
T Consensus       108 FIDEIHrl~~~vEE~L  123 (332)
T COG2255         108 FIDEIHRLSPAVEEVL  123 (332)
T ss_pred             EEEHHHHCCHHHHHHH
T ss_conf             7725531474289896


No 135
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain.  They export degradative enzymes by using a type I protein secretion system and  lack an N-terminal signal peptide, but contain a C-terminal secretion signal.  The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP).  For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli.  The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior.  HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels.  The spectrum of transport substra
Probab=95.18  E-value=0.019  Score=35.63  Aligned_cols=115  Identities=17%  Similarity=0.152  Sum_probs=64.3

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCH-H--------HHHHHHHHHH---HHHHHHHHHHCCCCCC-CCCCCCHHHHH
Q ss_conf             86499888887728999999998578111-4--------6888999999---9999999971311224-66557807899
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEK-K--------CRLHFYEFMK---DVHSRIIMYRKKIEFG-EILESDPIPLV  132 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~-K--------~R~HFh~FM~---~ih~~l~~~~~~~~~~-~~~~~dpl~~v  132 (404)
                      -.-+=|-|+.|+|||-|+++.....+... +        ..+...++-.   .+-+.-+-+.+..... -++..----.+
T Consensus        28 G~~vaIvG~sGsGKSTLl~ll~gl~~p~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~eNiLSGGQkQRval  107 (173)
T cd03246          28 GESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGL  107 (173)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCEECCCCHHHHCCCHHHHHHHHH
T ss_conf             99999999999809999999966666799989999999332899898420899908883677758997676999999999


Q ss_pred             HHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             9999613879998423-20471358889999999985496899817868
Q gi|254781047|r  133 ASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFI  180 (404)
Q Consensus       133 a~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~  180 (404)
                      |..+..+.++|.+||- ---|......+-+.+..+-.+|.++|+.+.+.
T Consensus       108 ARal~~~p~ililDEpts~LD~~~e~~i~~~l~~l~~~~~Tvi~vtH~~  156 (173)
T cd03246         108 ARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP  156 (173)
T ss_pred             HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf             9998279999999687668998999999999997864898999984799


No 136
>KOG2004 consensus
Probab=95.17  E-value=0.28  Score=28.21  Aligned_cols=122  Identities=21%  Similarity=0.307  Sum_probs=74.5

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH----HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             886499888887728999999998578111468889999----9999999999713112246655780789999996138
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEF----MKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALES  140 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~F----M~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~  140 (404)
                      .-+=+-++|++|+|||=+-...-.++.  +|    |+.|    |.++- ++.-.|.+--+.-   +--|-.--+..--+-
T Consensus       437 qGkIlCf~GPPGVGKTSI~kSIA~ALn--Rk----FfRfSvGG~tDvA-eIkGHRRTYVGAM---PGkiIq~LK~v~t~N  506 (906)
T KOG2004         437 QGKILCFVGPPGVGKTSIAKSIARALN--RK----FFRFSVGGMTDVA-EIKGHRRTYVGAM---PGKIIQCLKKVKTEN  506 (906)
T ss_pred             CCCEEEEECCCCCCCCCHHHHHHHHHC--CC----EEEEECCCCCCHH-HHCCCCEEEECCC---CHHHHHHHHHHCCCC
T ss_conf             883799868998773218999999848--74----6998536634277-6425421100148---848999998617788


Q ss_pred             CEEEEEEE------EECCCHHHHHH-------HHHHHHHHH-----CCCEEEEECCCC---HHHHHCCCCCHHHHHHHHH
Q ss_conf             79998423------20471358889-------999999985-----496899817868---6775238740566898999
Q gi|254781047|r  141 RVLCFDEF------MITNIADAIIL-------SRLFAALFS-----HGCIIVMTSNFI---PENLYKDEINRNVLVSFIE  199 (404)
Q Consensus       141 ~lLCfDEF------~V~DiaDAmil-------~rl~~~lf~-----~gv~lV~TSN~~---P~dLY~~GLqR~~FlPfI~  199 (404)
                      .|+.+||.      +--|+|.|++=       +.++.++.+     ..|..|+|.|.-   |.                 
T Consensus       507 PliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~-----------------  569 (906)
T KOG2004         507 PLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPP-----------------  569 (906)
T ss_pred             CEEEEEHHHHHCCCCCCCHHHHHHHHCCHHHCCCHHHHCCCCCCCHHHEEEEEECCCCCCCCH-----------------
T ss_conf             658853223417887798689998743965355345420266421110688985364456985-----------------


Q ss_pred             HHHHCCEEEECCCC
Q ss_conf             99850508980473
Q gi|254781047|r  200 LLEKKLEIISLDSG  213 (404)
Q Consensus       200 ~lk~~~~V~~l~~~  213 (404)
                      -|..+++|++|.|-
T Consensus       570 pLlDRMEvIelsGY  583 (906)
T KOG2004         570 PLLDRMEVIELSGY  583 (906)
T ss_pred             HHHHHHHEEECCCC
T ss_conf             66412232203672


No 137
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.14  E-value=0.095  Score=31.16  Aligned_cols=20  Identities=20%  Similarity=0.129  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHCCCCCEEE
Q ss_conf             99899999998228982899
Q gi|254781047|r  318 IKRFIMLIDVFYEHKIGLII  337 (404)
Q Consensus       318 arRFI~LID~lYd~kv~Li~  337 (404)
                      .|.=|.+.=++|-+.--|++
T Consensus       456 QrQRialARAll~~p~iliL  475 (569)
T PRK10789        456 QKQRISIARALLLNAEILIL  475 (569)
T ss_pred             HHHHHHHHHHHHCCCCEEEE
T ss_conf             99999999999549998998


No 138
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252   This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=95.11  E-value=0.081  Score=31.60  Aligned_cols=149  Identities=21%  Similarity=0.265  Sum_probs=86.6

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH-------------------------HHHHHHHHHC
Q ss_conf             666886499888887728999999998578111468889999999-------------------------9999999713
Q gi|254781047|r   62 KYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKD-------------------------VHSRIIMYRK  116 (404)
Q Consensus        62 ~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~-------------------------ih~~l~~~~~  116 (404)
                      +.+-||=+-||||+|+|||----+..+-...     ...--|-.+                         ||+=+.+=. 
T Consensus       172 aSPfPQHiiLYGPPGVGKTTaARl~LEe~K~-----~~~tPF~~DA~FvEVDGtTLRWDPREvTNPLLGSVHDPIYQGa-  245 (616)
T TIGR02903       172 ASPFPQHIILYGPPGVGKTTAARLALEEAKK-----LKNTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGA-  245 (616)
T ss_pred             CCCCCCCEEEECCCCCCHHHHHHHHHHHCCC-----CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-
T ss_conf             1888660785573388478999998762136-----8744761137857515762667741014776776257655676-


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCC--EEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHH
Q ss_conf             1122466557807899999961387--99984232047135888999999998549689981786867752387405668
Q gi|254781047|r  117 KIEFGEILESDPIPLVASSIALESR--VLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVL  194 (404)
Q Consensus       117 ~~~~~~~~~~dpl~~va~~l~~~~~--lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~F  194 (404)
                      ++...+++.+.|=    ..|..+++  |||+||.==   =|.|+=.+||+-|=++.| -.-+|=+-|||=  |       
T Consensus       246 ~RDLAE~GvPEPk----~GLVT~AHGGvLFIDEIGE---LD~lLQnKLLKVLEDKrV-~F~SsYYDpdD~--N-------  308 (616)
T TIGR02903       246 RRDLAETGVPEPK----LGLVTDAHGGVLFIDEIGE---LDPLLQNKLLKVLEDKRV-EFSSSYYDPDDE--N-------  308 (616)
T ss_pred             CHHHCCCCCCCCC----CCCCCCCCCCEEEEECHHH---HHHHHHHHHHHHHCCCEE-EEEECCCCCCCC--C-------
T ss_conf             4011047879898----9871004775676502112---227876324443226436-653212487537--8-------


Q ss_pred             HH-HHHHHHHCCEEEECCCCCHHHHCCCCC--------------CCEEEECCCHHHHHHH
Q ss_conf             98-999998505089804731122112367--------------8302203530226899
Q gi|254781047|r  195 VS-FIELLEKKLEIISLDSGQDYRRKEQSI--------------LPIYMTPLNSYNRVLM  239 (404)
Q Consensus       195 lP-fI~~lk~~~~V~~l~~~~DYR~~~~~~--------------~~~y~~p~~~~~~~~l  239 (404)
                      +| .|+.|      ++=+.+-||=+...+-              +.+||.|+++..-..+
T Consensus       309 vPkYIK~l------Fe~GAPADFvLIGATTr~P~eINpALRSRCaEvfFePL~p~dI~~I  362 (616)
T TIGR02903       309 VPKYIKKL------FEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIKEI  362 (616)
T ss_pred             CCHHHHHH------HCCCCCCCEEEECCCCCCHHHCCHHHHCCCCEEECCCCCHHHHHHH
T ss_conf             65588885------2268882568726615882440512330143132179887899999


No 139
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.10  E-value=0.12  Score=30.58  Aligned_cols=108  Identities=20%  Similarity=0.177  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             89999999999999998613543332256643102466666688649988888772899999999857811146888999
Q gi|254781047|r   23 PAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYE  102 (404)
Q Consensus        23 ~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~  102 (404)
                      -.|.++.+.|.-....=..                    ...+.--+-+||++|.|||-|-...-+-+...-        
T Consensus        28 iGQ~~i~~~L~v~i~Aak~--------------------r~e~ldH~Ll~GPPGlGKTTLA~iiA~E~~~~~--------   79 (328)
T PRK00080         28 IGQEKVKENLKIFIEAAKK--------------------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNI--------   79 (328)
T ss_pred             CCHHHHHHHHHHHHHHHHH--------------------CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCC--------
T ss_conf             5959999999999999996--------------------499988057658899889999999999868881--------


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             9999999999971311224665578078999999613879998423204713588899999999854968998
Q gi|254781047|r  103 FMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVM  175 (404)
Q Consensus       103 FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~  175 (404)
                               +.   ..+..-.+..|-....  .-.++.+|||+||.|=-..+=-=+   |..++=+..+-++.
T Consensus        80 ---------~~---tsGP~lek~~DL~~iL--t~l~~~dvLFIDEIHRl~~~vEE~---LY~AMEDf~iDi~i  135 (328)
T PRK00080         80 ---------RI---TSGPALEKAGDLAALL--TNLEEGDVLFIDEIHRLSPVVEEI---LYPAMEDFRLDIMI  135 (328)
T ss_pred             ---------EE---CCCCCCCCHHHHHHHH--HHCCCCCEEEEHHHHHCCHHHHHH---HHHHHHHCEEEEEE
T ss_conf             ---------56---2450016747899999--608878767650653248889988---57987752345786


No 140
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.08  E-value=0.088  Score=31.37  Aligned_cols=120  Identities=17%  Similarity=0.126  Sum_probs=67.9

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             68864998888877289999999985781114688899-----9999999999997-13112246655780789999996
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY-----EFMKDVHSRIIMY-RKKIEFGEILESDPIPLVASSIA  137 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh-----~FM~~ih~~l~~~-~~~~~~~~~~~~dpl~~va~~l~  137 (404)
                      ++.--|.|+|..|+||.++--..++..+-+.+-=++-|     +=+  +.++|+-. ++.-.+. .......  +  +.+
T Consensus       207 ~sd~pVLI~GEtGTGKelvAr~IH~~S~R~~~Pfv~vNCaalpe~l--~EseLFGh~kGaFtGA-~~~r~G~--f--e~A  279 (510)
T PRK05022        207 ASDLNVLITGETGVGKELVARAIHQASPRAVKPLVYLNCAALPESL--AESELFGHVKGAFTGA-ISNRSGK--F--ELA  279 (510)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHH--HHHHHCCCCCCCCCCC-CCCCCCC--E--EEC
T ss_conf             8999889889898139999999996688789985788899998567--8998659777886886-5567881--0--177


Q ss_pred             CCCCEEEEEEEEECCCHHHHHHHHHHHHHHH-------------CCCEEEEECCCCHHHHHCCCCCHHHH
Q ss_conf             1387999842320471358889999999985-------------49689981786867752387405668
Q gi|254781047|r  138 LESRVLCFDEFMITNIADAIILSRLFAALFS-------------HGCIIVMTSNFIPENLYKDEINRNVL  194 (404)
Q Consensus       138 ~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~-------------~gv~lV~TSN~~P~dLY~~GLqR~~F  194 (404)
                      .+ --|++||..=  ..-++ =.+|+..|-+             -.+.+|++||+.+.++-..|..|+.+
T Consensus       280 ~g-GTLfLDEI~~--Lpl~~-Q~KLLrvLq~g~iqrvG~~~~~~vdvRIIAATnrdL~~~V~~G~FR~DL  345 (510)
T PRK05022        280 DG-GTLFLDEIGE--LPLAL-QAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVLAGRFRADL  345 (510)
T ss_pred             CC-CEEEEECHHH--CCHHH-HHHHHHHHHCCEEEECCCCCEEEEEEEEEEECCCCHHHHHHCCCHHHHH
T ss_conf             89-8798757454--99999-9999999847958855899466666899960783599998839638999


No 141
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.07  E-value=0.26  Score=28.37  Aligned_cols=89  Identities=21%  Similarity=0.214  Sum_probs=62.8

Q ss_pred             CCCCCHHHHHHH--------HCCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHH
Q ss_conf             111019998521--------024689999985378899818987872463899989999999822898289980789788
Q gi|254781047|r  274 VSRFSFFDLCDR--------PLSANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIED  345 (404)
Q Consensus       274 va~f~F~eLC~~--------~lg~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~  345 (404)
                      |+.++..+|...        ..+..+++......+.++|+|+-.-.. +.-..--+-.+||.-|.++.+.++|+..++++
T Consensus       214 Viy~ta~~L~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDLG~E~~-t~~~~~~Lf~iIN~R~~~~k~tIITTNl~~~e  292 (330)
T PRK06835        214 VIYRTSDELIENLREIRFNNDNDAPELEDLLINCDLLIIDDLGTESI-TEFSKTELFNLINKRLLMNKKMIISTNLSLEE  292 (330)
T ss_pred             EEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEEECCCCCCC-CHHHHHHHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf             99962999999999975457644899999996189899721034558-86899999999999986799979988999899


Q ss_pred             HCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             0134676531348998988745242
Q gi|254781047|r  346 LFPYKLRKGAFEIQRTVSRLYEMFS  370 (404)
Q Consensus       346 L~~~~~~~~~F~f~Rt~SRL~EMqS  370 (404)
                      |-.      . --+|+.|||.+|-+
T Consensus       293 L~~------~-y~eRi~SRi~~~~~  310 (330)
T PRK06835        293 LLK------T-YSERIASRLLGNFT  310 (330)
T ss_pred             HHH------H-HHHHHHHHHHHCCE
T ss_conf             999------8-74899999981854


No 142
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.04  E-value=0.083  Score=31.53  Aligned_cols=95  Identities=17%  Similarity=0.118  Sum_probs=54.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCHH-------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---HHHHHHHHHH-
Q ss_conf             998888877289999999985781114-------68889999999999999971311224665578---0789999996-
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALVPIEKK-------CRLHFYEFMKDVHSRIIMYRKKIEFGEILESD---PIPLVASSIA-  137 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l~~~~K-------~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~d---pl~~va~~l~-  137 (404)
                      +-|.|+||+|||.|.-.+.+.++...-       ..+...+|+..|-+.+..-   . ...+ ...   .|...-.++. 
T Consensus        46 ~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~~~l~~~~ll~~i~~~lg~~---~-~~~~-~~~~~~~l~~~L~~~~~  120 (269)
T TIGR03015        46 ILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLE---T-EGRD-KAALLRELEDFLIEQFA  120 (269)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC---C-CCCC-HHHHHHHHHHHHHHHHH
T ss_conf             99972998988999999998459345489997699999999999999985989---8-8989-99999999999999996


Q ss_pred             -CCCCEEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             -1387999842320471358889999999985
Q gi|254781047|r  138 -LESRVLCFDEFMITNIADAIILSRLFAALFS  168 (404)
Q Consensus       138 -~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~  168 (404)
                       ...-||-+||=|--+..-.--|..|...-.+
T Consensus       121 ~g~~~vliIDEAq~L~~~~Le~Lr~L~n~e~~  152 (269)
T TIGR03015       121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTD  152 (269)
T ss_pred             CCCCEEEEEECHHHCCHHHHHHHHHHHCCCCC
T ss_conf             69946999724221999999999999701358


No 143
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity.  In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs.  Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.03  E-value=0.28  Score=28.20  Aligned_cols=51  Identities=12%  Similarity=0.214  Sum_probs=37.5

Q ss_pred             HHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf             999999613879998423-204713588899999999854968998178686
Q gi|254781047|r  131 LVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIP  181 (404)
Q Consensus       131 ~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P  181 (404)
                      .+|..++.+-++|++||= -=-|+.-...+..++..+-+.|..++.||-...
T Consensus       138 ~la~al~~~p~lllLDEPt~gLDp~~~~~i~~~i~~~~~~g~til~ssH~l~  189 (210)
T cd03269         138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME  189 (210)
T ss_pred             HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf             9999995799899992886679999999999999999968989999888489


No 144
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.02  E-value=0.13  Score=30.23  Aligned_cols=27  Identities=33%  Similarity=0.450  Sum_probs=21.6

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             864998888877289999999985781
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      -+=+-|-|+.|+|||-|+.+.-...+.
T Consensus        28 Ge~i~IvG~sGsGKSTLl~ll~gl~~p   54 (234)
T cd03251          28 GETVALVGPSGSGKSTLVNLIPRFYDV   54 (234)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf             999999989998299999999667667


No 145
>cd03221 ABCF_EF-3 ABCF_EF-3  Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth.  EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site.  The reaction requires ATP hydrolysis.  EF-3 contains two ATP nucleotide binding sequence (NBS) motifs.  NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.01  E-value=0.075  Score=31.79  Aligned_cols=100  Identities=16%  Similarity=0.126  Sum_probs=61.9

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf             86499888887728999999998578111468889999999999999971311224665578078999999613879998
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCF  145 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCf  145 (404)
                      -+=+-|.|+-|+|||-|+++....++... -.+-+..  ..-...+.++    +    +..----.+|..++.+.++|.+
T Consensus        26 ge~~~l~G~NGsGKTTl~~~l~G~~~~~~-G~i~~~~--~~~i~y~~QL----S----gGqkqr~~la~al~~~p~iliL   94 (144)
T cd03221          26 GDRIGLVGRNGAGKSTLLKLIAGELEPDE-GIVTWGS--TVKIGYFEQL----S----GGEKMRLALAKLLLENPNLLLL   94 (144)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCCCC-EEEEECC--CCEEEEEHHC----C----HHHHHHHHHHHHHCCCCCEEEE
T ss_conf             99999998999849999999848988985-0999999--6089987007----9----9999999999997259989999


Q ss_pred             EEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf             423-204713588899999999854968998178
Q gi|254781047|r  146 DEF-MITNIADAIILSRLFAALFSHGCIIVMTSN  178 (404)
Q Consensus       146 DEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN  178 (404)
                      ||- ---|+.....+.+++..+  .+.+++.|.|
T Consensus        95 DEPt~~LD~~~~~~i~~~l~~~--~~tii~vsHd  126 (144)
T cd03221          95 DEPTNHLDLESIEALEEALKEY--PGTVILVSHD  126 (144)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHC--CCEEEEEECC
T ss_conf             5775558999999999999970--9999999679


No 146
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.00  E-value=0.076  Score=31.76  Aligned_cols=93  Identities=17%  Similarity=0.179  Sum_probs=56.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf             49988888772899999999857811146888999999999999997131122466557807899999961387999842
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDE  147 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDE  147 (404)
                      =+.|+|+=++|||.+++++-...+.. .--+-|-+. ..-..++              .|.+...+.....+...|++||
T Consensus        39 i~~i~GpR~~GKTtllk~l~~~~~~~-~iy~~~~d~-~~~~~~l--------------~d~~~~~~~~~~~~~~yifLDE  102 (398)
T COG1373          39 IILILGPRQVGKTTLLKLLIKGLLEE-IIYINFDDL-RLDRIEL--------------LDLLRAYIELKEREKSYIFLDE  102 (398)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCC-EEEEECCCC-CCCHHHH--------------HHHHHHHHHHHCCCCCEEEEEE
T ss_conf             49998886477899999999747773-599973620-0013567--------------7899999985222574599983


Q ss_pred             EEECCCHHHHHHHHHHHHHHHCCC--EEEEECCCCH
Q ss_conf             320471358889999999985496--8998178686
Q gi|254781047|r  148 FMITNIADAIILSRLFAALFSHGC--IIVMTSNFIP  181 (404)
Q Consensus       148 F~V~DiaDAmil~rl~~~lf~~gv--~lV~TSN~~P  181 (404)
                      .|-..=     .-+.+..|.+.|-  +++++||..-
T Consensus       103 Iq~v~~-----W~~~lk~l~d~~~~~v~itgsss~l  133 (398)
T COG1373         103 IQNVPD-----WERALKYLYDRGNLDVLITGSSSSL  133 (398)
T ss_pred             ECCCHH-----HHHHHHHHHCCCCCEEEEECCCHHH
T ss_conf             337610-----8999999975677509998371675


No 147
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.96  E-value=0.28  Score=28.18  Aligned_cols=75  Identities=13%  Similarity=0.128  Sum_probs=58.1

Q ss_pred             HCCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             02468999998537889981898787246389998999999982289828998078978801346765313489989887
Q gi|254781047|r  286 PLSANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRL  365 (404)
Q Consensus       286 ~lg~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL  365 (404)
                      ..+..+++.-..+++.++|+++-.-. ....+.--+-.+||.=|....+.++++..++++|-.+       -=+|+.|||
T Consensus       147 ~~~e~~~l~~l~~~dLLIiDdlG~e~-~t~~~~~~lf~iId~Ry~~~kp~IitTNl~~~eL~~~-------lGeR~~dRl  218 (242)
T PRK07952        147 ETSEEQLLNDLSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKL-------LGERVMDRM  218 (242)
T ss_pred             CCCHHHHHHHHHCCCEEEEECCCCCC-CCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH-------HHHHHHHHH
T ss_conf             75699999986318989873014665-8888999999999999971698899817999999999-------708999999


Q ss_pred             HHH
Q ss_conf             452
Q gi|254781047|r  366 YEM  368 (404)
Q Consensus       366 ~EM  368 (404)
                      .+.
T Consensus       219 ~~~  221 (242)
T PRK07952        219 RLG  221 (242)
T ss_pred             HHC
T ss_conf             727


No 148
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.94  E-value=0.12  Score=30.56  Aligned_cols=80  Identities=20%  Similarity=0.241  Sum_probs=61.4

Q ss_pred             CCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             24689999985378899818987872463899989999999822898289980789788013467653134899898874
Q gi|254781047|r  287 LSANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLY  366 (404)
Q Consensus       287 lg~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~  366 (404)
                      -...+|..--+..++++|+||.-+.. ..-...-|-+.++.||+++..++++++.+|.+|   .+.+     +|-+||+.
T Consensus       191 ~~~~~Fr~~yr~~DvLLIDDIQfl~g-K~~tqeEff~tfN~L~~~~KQIVitsDr~P~el---~~l~-----~RL~SRf~  261 (455)
T PRK12422        191 GEMQRFRSFYRNVDALFIEDIEVFSG-KGATQEEFFHTFNSLHTEGKLIVISSSYAPGDL---KAME-----ERLISRFE  261 (455)
T ss_pred             CCHHHHHHHHHCCCEEEEEHHHHHHC-CHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH---HHHH-----HHHHHHHH
T ss_conf             88999999996388776314788728-488999999999999985996999689895765---1268-----99998863


Q ss_pred             -----HHCCHHHHH
Q ss_conf             -----524278897
Q gi|254781047|r  367 -----EMFSAQYIG  375 (404)
Q Consensus       367 -----EMqS~~yl~  375 (404)
                           +++.+++=.
T Consensus       262 ~GL~v~I~~Pd~et  275 (455)
T PRK12422        262 WGIAIPIHPLTREG  275 (455)
T ss_pred             CCEEECCCCCCHHH
T ss_conf             76132168999899


No 149
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export.  They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins.  The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities.  The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD).  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.86  E-value=0.034  Score=34.03  Aligned_cols=108  Identities=18%  Similarity=0.234  Sum_probs=60.7

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHH-------------HHHHHHHHHHHHHH----HCCCCCCCCCCCCHH
Q ss_conf             6499888887728999999998578111468889-------------99999999999997----131122466557807
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHF-------------YEFMKDVHSRIIMY----RKKIEFGEILESDPI  129 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HF-------------h~FM~~ih~~l~~~----~~~~~~~~~~~~dpl  129 (404)
                      .=+-|-|+-|+|||-|+.++..-++... -++-+             ..-+..|.+.-+-+    +.+.   -++..---
T Consensus        29 e~i~ivG~sGsGKSTLl~ll~gl~~p~~-G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~tv~eNi---LSgGq~Qr  104 (171)
T cd03228          29 EKVAIVGPSGSGKSTLLKLLLRLYDPTS-GEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI---LSGGQRQR  104 (171)
T ss_pred             CEEEEECCCCCHHHHHHHHHHCCCCCCC-CEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHC---CCHHHHHH
T ss_conf             8999999999839999999976775897-4899999998859989986318999666843757799977---44889999


Q ss_pred             HHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf             8999999613879998423-204713588899999999854968998178
Q gi|254781047|r  130 PLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSN  178 (404)
Q Consensus       130 ~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN  178 (404)
                      -.+|..++.+.++|.+||- -=-|...+..+-.++..+.+...+++.|-+
T Consensus       105 i~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~Tvi~vtH~  154 (171)
T cd03228         105 IAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHR  154 (171)
T ss_pred             HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             99999997489989995776679989999999999998099989999579


No 150
>KOG0739 consensus
Probab=94.86  E-value=0.038  Score=33.67  Aligned_cols=28  Identities=32%  Similarity=0.356  Sum_probs=21.8

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf             6688649988888772899999999857
Q gi|254781047|r   63 YCSMQGIYLHGDVGQGKSMLMNLFFALV   90 (404)
Q Consensus        63 ~~~~kGlYL~G~VG~GKT~LMdlFy~~l   90 (404)
                      ..|-+|+.|||++|+|||+|-.+--.-+
T Consensus       163 R~PwrgiLLyGPPGTGKSYLAKAVATEA  190 (439)
T KOG0739         163 RKPWRGILLYGPPGTGKSYLAKAVATEA  190 (439)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             7754257886799975779999987414


No 151
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion.  Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins.  Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.84  E-value=0.19  Score=29.31  Aligned_cols=111  Identities=16%  Similarity=0.084  Sum_probs=58.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHH----HHHHHHH--HHHHHHHHHHHHH------CCCCCCCCCCCCHHHHHHHH
Q ss_conf             4998888877289999999985781114----6888999--9999999999971------31122466557807899999
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEKK----CRLHFYE--FMKDVHSRIIMYR------KKIEFGEILESDPIPLVASS  135 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K----~R~HFh~--FM~~ih~~l~~~~------~~~~~~~~~~~dpl~~va~~  135 (404)
                      =+-|-|+-|+|||-|+..........+-    .+...+.  |.-++.. +....      ++....-++..----.+|..
T Consensus        23 ~~~iiG~nGsGKSTLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~l~~~~l~~~~~~LSGGqkQRvaiAra  101 (176)
T cd03238          23 LVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQF-LIDVGLGYLTLGQKLSTLSGGELQRVKLASE  101 (176)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCHHHCCHHHCCCCCEEEHHHHHH-HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             999999999989999998887610311203210137553688577999-9974886677899168689999999999999


Q ss_pred             HHCCCC--EEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             961387--9998423-2047135888999999998549689981786
Q gi|254781047|r  136 IALESR--VLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNF  179 (404)
Q Consensus       136 l~~~~~--lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~  179 (404)
                      ++.+.+  +|.+||= -=-|+.....+-.++..|-++|.++|+.|-.
T Consensus       102 L~~~p~~~ililDEPtsgLD~~~~~~l~~~l~~l~~~g~TvI~vtHd  148 (176)
T cd03238         102 LFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN  148 (176)
T ss_pred             HHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             98689986899717744589879999999999999879989999478


No 152
>KOG0731 consensus
Probab=94.83  E-value=0.022  Score=35.15  Aligned_cols=141  Identities=18%  Similarity=0.227  Sum_probs=72.3

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf             68864998888877289999999985781114688899999999999999713112246655780789999996138799
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL  143 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL  143 (404)
                      ..|||+-|.|++|+|||+|-.+-..-+.++=- -+-=-+|+-     +..-.+     .+... -|-..|+..  --.++
T Consensus       342 KiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~-svSGSEFvE-----~~~g~~-----asrvr-~lf~~ar~~--aP~ii  407 (774)
T KOG0731         342 KIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF-SVSGSEFVE-----MFVGVG-----ASRVR-DLFPLARKN--APSII  407 (774)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHCCCCCCEE-EECHHHHHH-----HHCCCC-----HHHHH-HHHHHHHCC--CCEEE
T ss_conf             67675178789998678999988530589646-413378888-----760343-----48889-999874326--98079


Q ss_pred             EEEEEEECC------------CHHHHHHHHHHHHH----HHCCCEEEEECCCC----HHHHHCCCCCHHHHH--HH----
Q ss_conf             984232047------------13588899999999----85496899817868----677523874056689--89----
Q gi|254781047|r  144 CFDEFMITN------------IADAIILSRLFAAL----FSHGCIIVMTSNFI----PENLYKDEINRNVLV--SF----  197 (404)
Q Consensus       144 CfDEF~V~D------------iaDAmil~rl~~~l----f~~gv~lV~TSN~~----P~dLY~~GLqR~~Fl--Pf----  197 (404)
                      ++||+-..-            ---+--|..|+..+    -..||+++++-|++    |.-|=++-.-|.-++  |-    
T Consensus       408 fideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r  487 (774)
T KOG0731         408 FIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGR  487 (774)
T ss_pred             EECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCCCEECCCCCHHHH
T ss_conf             71454200312556666788807888999887875277677847998116886642887649875555232469851416


Q ss_pred             HHHHHHCCEEEECC-CCCHHHH
Q ss_conf             99998505089804-7311221
Q gi|254781047|r  198 IELLEKKLEIISLD-SGQDYRR  218 (404)
Q Consensus       198 I~~lk~~~~V~~l~-~~~DYR~  218 (404)
                      -++++-|..-..++ ...||..
T Consensus       488 ~~i~~~h~~~~~~~~e~~dl~~  509 (774)
T KOG0731         488 ASILKVHLRKKKLDDEDVDLSK  509 (774)
T ss_pred             HHHHHHHHHCCCCCCCHHHHHH
T ss_conf             8999998621577631567999


No 153
>KOG0738 consensus
Probab=94.83  E-value=0.026  Score=34.76  Aligned_cols=27  Identities=22%  Similarity=0.410  Sum_probs=22.9

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             886499888887728999999998578
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      |=||+.++|++|+|||||-.+.+.-+.
T Consensus       244 PWkgvLm~GPPGTGKTlLAKAvATEc~  270 (491)
T KOG0738         244 PWKGVLMVGPPGTGKTLLAKAVATECG  270 (491)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             530005567999747899999988616


No 154
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.83  E-value=0.061  Score=32.36  Aligned_cols=23  Identities=26%  Similarity=0.531  Sum_probs=16.9

Q ss_pred             EEEECCCCCCHHHHH-HHHHHHCC
Q ss_conf             998888877289999-99998578
Q gi|254781047|r   69 IYLHGDVGQGKSMLM-NLFFALVP   91 (404)
Q Consensus        69 lYL~G~VG~GKT~LM-dlFy~~l~   91 (404)
                      .-|.|++|+|||.+. ...|+.+.
T Consensus         2 tLi~G~pGsGKT~~a~qfl~~~a~   25 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLA   25 (187)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             158768999999999999999987


No 155
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.82  E-value=0.19  Score=29.19  Aligned_cols=69  Identities=20%  Similarity=0.268  Sum_probs=52.2

Q ss_pred             HHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             8999998537889981898787246389998999999982289-82899807897880134676531348998988745
Q gi|254781047|r  290 NDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHK-IGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLYE  367 (404)
Q Consensus       290 ~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~k-v~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~E  367 (404)
                      .++++=.+.++.|+|+||-.+... .....-|-+++..+++.+ ++++++|+.+|.+|-    .    ...|-.|||.=
T Consensus        89 ~~~l~~l~~~dll~iDDi~~i~g~-~~~ee~lF~l~N~~~~~g~~~ll~ts~~~P~~l~----~----~l~DL~SRl~~  158 (235)
T PRK08084         89 PEVLEGMEQLSLVCIDNIECIAGD-ELWEMAIFDLYNRILESGKTRLLITGDRPPRQLN----L----GLPDLASRLDW  158 (235)
T ss_pred             HHHHHHHHHCCEEEEECHHHHCCC-HHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCC----C----CCHHHHHHHHC
T ss_conf             999987641898998274554699-7899999999999998489669996798824302----3----12889999956


No 156
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.  This family is also known as MRP (mulrtidrug resisitance-associated protein).  Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear.  The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.62  E-value=0.27  Score=28.23  Aligned_cols=27  Identities=26%  Similarity=0.367  Sum_probs=22.0

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             864998888877289999999985781
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      -.=+-|-|+-|+|||-|+.+....++.
T Consensus        31 Ge~~~IvG~sGsGKSTLl~~i~G~~~~   57 (204)
T cd03250          31 GELVAIVGPVGSGKSSLLSALLGELEK   57 (204)
T ss_pred             CCEEEEECCCCCCHHHHHHHHCCCCCC
T ss_conf             989999999998589999998189525


No 157
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters.  PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes.  This PDR subfamily represents domain I of its (ABC-IM)2 organization.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules.  The nucleotide-binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.61  E-value=0.096  Score=31.13  Aligned_cols=118  Identities=14%  Similarity=0.146  Sum_probs=64.0

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCH--HHH--------------------------HHHHHHHHHHHHHHH---HH
Q ss_conf             86499888887728999999998578111--468--------------------------889999999999999---97
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEK--KCR--------------------------LHFYEFMKDVHSRII---MY  114 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~--K~R--------------------------~HFh~FM~~ih~~l~---~~  114 (404)
                      -.=+-|-|+-|.|||-||.+....++...  .-.                          .||...  .+.+.+.   ..
T Consensus        33 Gei~~llG~nGsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~v~q~~~~~~~l--tv~e~l~~~~~~  110 (202)
T cd03233          33 GEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL--TVRETLDFALRC  110 (202)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCHHHHHHHCCEEEECCCCCCCCCC--CHHHHHHHHHHH
T ss_conf             849999989999889999998378789875137999999994051486420199986732237688--099999999984


Q ss_pred             HCCC-CCCCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHH-CCCEEEEECCCCHHHHH
Q ss_conf             1311-224665578078999999613879998423-20471358889999999985-49689981786867752
Q gi|254781047|r  115 RKKI-EFGEILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFS-HGCIIVMTSNFIPENLY  185 (404)
Q Consensus       115 ~~~~-~~~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~-~gv~lV~TSN~~P~dLY  185 (404)
                      +++. -..-++..---..+|..++.+.++|++||- -=-|+..+.-+-+++..+.+ .|.++|+|+..+.++++
T Consensus       111 ~~~~~~~~LSgGqkqRv~iA~aL~~~P~illlDEPt~gLD~~~~~~i~~~l~~l~~~~~~t~ii~~~~~~~~~~  184 (202)
T cd03233         111 KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIY  184 (202)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHH
T ss_conf             65874445899999999999999529988998387656899999999999999998779989999906989999


No 158
>cd03299 ABC_ModC_like Archeal protein closely related to ModC.  ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.55  E-value=0.33  Score=27.69  Aligned_cols=24  Identities=25%  Similarity=0.462  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             499888887728999999998578
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      =+=|-|+-|+|||.||.+..--.+
T Consensus        27 ~~~iiGpSGsGKSTLlr~i~Gl~~   50 (235)
T cd03299          27 YFVILGPTGSGKSVLLETIAGFIK   50 (235)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999999996359999999974999


No 159
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.46  E-value=0.42  Score=27.06  Aligned_cols=25  Identities=36%  Similarity=0.550  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             4998888877289999999985781
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      =+=|-|+-|+|||-|+.+...-.+.
T Consensus        29 ~~~lvGpnGaGKSTLl~~i~Gl~~p   53 (255)
T PRK11248         29 LLVVLGPSGCGKTTLLNLIAGFVPP   53 (255)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf             9999999984699999999759988


No 160
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos).  The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis.  Pentoses include xylose, arabinose, and ribose.  Important hexoses include glucose, galactose, and fructose.  In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains.  However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.45  E-value=0.21  Score=29.00  Aligned_cols=113  Identities=19%  Similarity=0.202  Sum_probs=70.7

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH----HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             8649988888772899999999857811146888999----999999999997131122466557807899999961387
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYE----FMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR  141 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~----FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~  141 (404)
                      ..=+-|-|+-|.|||-||.+..-.++... -++.+..    ++. ..+.. +..-..-..-++..----.+|..++.+-+
T Consensus        26 Gei~~lvG~nGaGKSTl~~~i~Gl~~p~~-G~i~i~G~~i~~~~-~~~~~-~~gi~~v~qLSgG~~Qrv~iaral~~~p~  102 (163)
T cd03216          26 GEVHALLGENGAGKSTLMKILSGLYKPDS-GEILVDGKEVSFAS-PRDAR-RAGIAMVYQLSVGERQMVEIARALARNAR  102 (163)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCCCC-CEEEECCEECCCCC-HHHHH-HCCCCEECCCCHHHHHHHHHHHHHHHCCC
T ss_conf             98999998899899999999957768985-78999999999999-99999-87994894699899999999999972999


Q ss_pred             EEEEEEEE-ECCCHHHHHHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf             99984232-04713588899999999854968998178686
Q gi|254781047|r  142 VLCFDEFM-ITNIADAIILSRLFAALFSHGCIIVMTSNFIP  181 (404)
Q Consensus       142 lLCfDEF~-V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P  181 (404)
                      +|.+||=- =-|+....-+..++..+-++|..+|.+|-...
T Consensus       103 llilDEPt~gLD~~~~~~i~~~l~~l~~~G~til~vtH~l~  143 (163)
T cd03216         103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD  143 (163)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf             99990975579999999999999999878989999938499


No 161
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids.  The  E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.44  E-value=0.43  Score=27.02  Aligned_cols=25  Identities=32%  Similarity=0.533  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             4998888877289999999985781
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      =+=|-|+-|.|||-||.+..-.++.
T Consensus        28 i~~liG~nGaGKSTLl~~i~Gl~~p   52 (222)
T cd03224          28 IVALLGRNGAGKTTLLKTIMGLLPP   52 (222)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf             9999999998599999999779889


No 162
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=94.43  E-value=0.056  Score=32.59  Aligned_cols=163  Identities=19%  Similarity=0.231  Sum_probs=87.4

Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEE-CCCCCCH
Q ss_conf             970058999999997488778989999999999999998613543332256643102466666688649988-8887728
Q gi|254781047|r    1 MSLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLH-GDVGQGK   79 (404)
Q Consensus         1 m~~~~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~-G~VG~GK   79 (404)
                      |+++.+...|+-    +.+..=-+|..++..|.....   ..               +       .---||+ |+-|+||
T Consensus         1 M~y~aLyrkyRP----~~F~dvvGQ~~v~~~L~nai~---~~---------------r-------i~HAyLF~GprGtGK   51 (563)
T PRK06674          1 MSYQALYRVFRP----QKFEDVVGQEHVTKTLQNALL---QE---------------K-------VSHAYLFSGPRGTGK   51 (563)
T ss_pred             CCCHHHHHHHCC----CCHHHHCCHHHHHHHHHHHHH---CC---------------C-------CCCEEEEECCCCCCH
T ss_conf             952878876389----976552480999999999998---49---------------9-------650343128998689


Q ss_pred             HHHHHHHHHHCCCCHHH-------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH-----HCCCCEEEEEE
Q ss_conf             99999999857811146-------8889999999999999971311224665578078999999-----61387999842
Q gi|254781047|r   80 SMLMNLFFALVPIEKKC-------RLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI-----ALESRVLCFDE  147 (404)
Q Consensus        80 T~LMdlFy~~l~~~~K~-------R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l-----~~~~~lLCfDE  147 (404)
                      |-+--.|-.++.+....       --.-......-|..+.+....  +.  ..-|-+..+-+.+     ...++|.-+||
T Consensus        52 ts~Ari~AkaLnC~~~~~~~pC~~C~~C~~i~~g~~~DviEiDaa--sn--~gVd~IR~i~~~v~~~P~~~~yKV~IIDe  127 (563)
T PRK06674         52 TSIAKVFAKAVNCEHAPVAEPCNECPSCLGITNGSISDVLEIDAA--SN--NGVDEIRDIRDKVKFAPSAVEYKVYIIDE  127 (563)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCC--CC--CCHHHHHHHHHHHCCCCCCCCEEEEEEEC
T ss_conf             999999999857999999887766878999855899877985255--55--78799999999826488678737999854


Q ss_pred             EEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf             3204713588899999999854968998178686775238740566898999998505089804
Q gi|254781047|r  148 FMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD  211 (404)
Q Consensus       148 F~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~  211 (404)
                      .|--...-+=-|-+.++.-=.+-+++.+|++  |+.|             ...|..+|..+++.
T Consensus       128 ah~Lt~~A~NALLKtLEEPP~~viFILaTte--p~ki-------------~~TI~SRCQrf~F~  176 (563)
T PRK06674        128 VHMLSIGAFNALLKTLEEPPGHVIFILATTE--PHKI-------------PPTIISRCQRFDFR  176 (563)
T ss_pred             HHHCCHHHHHHHHHHHHCCCCCEEEEEECCC--HHHC-------------CHHHHHHHEEEECC
T ss_conf             5637999999999986388756499996599--4758-------------47887331031278


No 163
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.38  E-value=0.17  Score=29.62  Aligned_cols=51  Identities=20%  Similarity=0.281  Sum_probs=39.6

Q ss_pred             HHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             8999999613879998423-20471358889999999985496899817868
Q gi|254781047|r  130 PLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFI  180 (404)
Q Consensus       130 ~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~  180 (404)
                      -.+|..++.+.++|.+||- -=-|+...--+.+++..+-++|..+|.+|-..
T Consensus       145 v~iAraL~~~P~lLlLDEPtagLD~~~~~~i~~ll~~l~~~G~tiiivsHdl  196 (271)
T PRK13638        145 VAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI  196 (271)
T ss_pred             HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf             9999999659998998387545899999999999999997899999984888


No 164
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=94.37  E-value=0.44  Score=26.93  Aligned_cols=54  Identities=22%  Similarity=0.308  Sum_probs=46.8

Q ss_pred             HHHHHHHHHCCCCEEEEEEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf             7899999961387999842320-47135888999999998549689981786867
Q gi|254781047|r  129 IPLVASSIALESRVLCFDEFMI-TNIADAIILSRLFAALFSHGCIIVMTSNFIPE  182 (404)
Q Consensus       129 l~~va~~l~~~~~lLCfDEF~V-~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~  182 (404)
                      .-.+|..++.+-++|.+||=-- -|++.+..+-.++..|-++|+.+|..|.+..+
T Consensus       151 rv~iA~aL~~~p~lLilDEPt~~LD~~~~~~l~~~l~~l~~~g~til~isH~l~~  205 (513)
T PRK13549        151 LVEIAKALNKQARLLILDEPTASLTESETAILLDIIRDLKQHGIACIYISHKLNE  205 (513)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf             9999887752998864066757888577799999999987559679999457143


No 165
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=94.35  E-value=0.15  Score=29.84  Aligned_cols=122  Identities=16%  Similarity=0.132  Sum_probs=65.2

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH--HHH-HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             8864998888877289999999985781114688899--999-9999999997131122466557807899999961387
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY--EFM-KDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR  141 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh--~FM-~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~  141 (404)
                      +..-|.|.|..|+||.++-...++..+-+.+-=+..+  ..- ..+.++|+-..+..-.+.....-.+-    +.+ +.-
T Consensus       165 s~~~VLI~GEsGTGKe~~Ar~IH~~S~r~~~pFv~vnc~ai~~~l~eseLFG~~kgaftga~~~~~G~~----e~A-~gG  239 (457)
T PRK11361        165 SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLF----ERA-NEG  239 (457)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCH----HHC-CCC
T ss_conf             899589988998578999999998379889983876478798577899971876678788531469861----335-998


Q ss_pred             EEEEEEEEECCCHHHHHHHHHHHHHHH-------------CCCEEEEECCCCHHHHHCCCCCHHHH
Q ss_conf             999842320471358889999999985-------------49689981786867752387405668
Q gi|254781047|r  142 VLCFDEFMITNIADAIILSRLFAALFS-------------HGCIIVMTSNFIPENLYKDEINRNVL  194 (404)
Q Consensus       142 lLCfDEF~V~DiaDAmil~rl~~~lf~-------------~gv~lV~TSN~~P~dLY~~GLqR~~F  194 (404)
                      -||+||..=-...   +=.+|+..|-+             -.+.+|++||+.++++-+.|..|+.+
T Consensus       240 TLfLdeI~~l~~~---~Q~kLLr~L~~~~~~~~g~~~~~~~dvRiIaaT~~~L~~~v~~g~Fr~DL  302 (457)
T PRK11361        240 TLLLDEIGEMPLV---LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDL  302 (457)
T ss_pred             CEECCCHHHHHHH---HHHHHHHHHHCCCEEECCCCCEEEECCEEEECCCCCHHHHHHCCCCHHHH
T ss_conf             2631466452399---99999999864927856997136653489965787859998758323889


No 166
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.31  E-value=0.32  Score=27.77  Aligned_cols=69  Identities=17%  Similarity=0.252  Sum_probs=51.4

Q ss_pred             HHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             999998537889981898787246389998999999982289828998078978801346765313489989887452
Q gi|254781047|r  291 DFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLYEM  368 (404)
Q Consensus       291 DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~EM  368 (404)
                      +.+.--+.++.++|+||-.+.... +...-+-+++..+++++..+++++..+|.++-        +...+=.|||.-+
T Consensus        83 ~~l~~l~~~d~l~iDDi~~i~~~~-~~e~~lF~l~N~~~~~~~~ilits~~~p~~l~--------~~l~dL~SRl~~~  151 (226)
T TIGR03420        83 EVLEGLEQADLVCLDDVEAIAGQP-EWQEALFHLYNRVREAGGRLLIAGRAAPAQLP--------LRLPDLRTRLAWG  151 (226)
T ss_pred             HHHHHCCCCCEEEEECHHHHCCCH-HHHHHHHHHHHHHHHHCCEEEEECCCCHHHCC--------CCHHHHHHHHHCC
T ss_conf             999727448999996633343783-78999999999998652828986788823203--------2017799999688


No 167
>cd03288 ABCC_SUR2 The SUR domain 2.  The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family.  Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel.  Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism.  It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.31  E-value=0.26  Score=28.35  Aligned_cols=27  Identities=41%  Similarity=0.540  Sum_probs=22.8

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             864998888877289999999985781
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      -.=+-|-|+.|+|||-|+.++..-++.
T Consensus        47 Ge~vaIvG~sGsGKSTL~~ll~gl~~p   73 (257)
T cd03288          47 GQKVGICGRTGSGKSSLSLAFFRMVDI   73 (257)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf             999999999998199999999605667


No 168
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component.  Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems.  The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions.  The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.30  E-value=0.22  Score=28.89  Aligned_cols=107  Identities=16%  Similarity=0.134  Sum_probs=64.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHC---CCC--------------HHHHHHHHHHHH----------HHHHHHHHHHCCCCC
Q ss_conf             49988888772899999999857---811--------------146888999999----------999999997131122
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALV---PIE--------------KKCRLHFYEFMK----------DVHSRIIMYRKKIEF  120 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l---~~~--------------~K~R~HFh~FM~----------~ih~~l~~~~~~~~~  120 (404)
                      =+=|-|+-|.|||-|+.+.--..   |.+              ...|....=+|.          .+.+.+.......+ 
T Consensus        28 i~~iiGpnGaGKSTLl~~i~G~~~~~~~~G~I~~~g~~i~~~~~~~~~~~gi~~~~q~~~~~~~~~~~~~l~~~~~~LS-  106 (200)
T cd03217          28 VHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVNEGFS-  106 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCHHHHHHCCEEEECCCHHHCCCCCHHHHHHHHCCCCC-
T ss_conf             9999968999999999997077777852007999999988699999997694896367687079849999976463679-


Q ss_pred             CCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf             4665578078999999613879998423-204713588899999999854968998178
Q gi|254781047|r  121 GEILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSN  178 (404)
Q Consensus       121 ~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN  178 (404)
                         +..---..+|..++.+-+||.+||= -=-|+.....+.+++..+-++|.++|++|-
T Consensus       107 ---GGekqrv~iaral~~~P~lllLDEPtsgLD~~~~~~i~~~i~~l~~~g~tiiiitH  162 (200)
T cd03217         107 ---GGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITH  162 (200)
T ss_pred             ---HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             ---99999999999996099999996962269999999999999999857999999996


No 169
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.29  E-value=0.013  Score=36.64  Aligned_cols=126  Identities=20%  Similarity=0.359  Sum_probs=69.1

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH--HHH------HHHHHCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             64998888877289999999985781114688899999999--999------9997131122466557807899999961
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDV--HSR------IIMYRKKIEFGEILESDPIPLVASSIAL  138 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~i--h~~------l~~~~~~~~~~~~~~~dpl~~va~~l~~  138 (404)
                      .-+.+.|++|+|||+|-.-+-..+...+    .|.-.|...  -++      +..++..         +-.......+.-
T Consensus        40 ehvlllGPPGtAKS~larrl~~~~~~a~----~FeyLltRFstPeElFGP~si~~Lk~~---------g~y~R~t~G~LP  106 (498)
T PRK13531         40 ESVFLLGPPGIAKSLIARRLKFAFQHAR----AFEYLMTRFSTPEEVFGPLSIQALKDE---------GRYERLTSGYLP  106 (498)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHHHCCCH----HHHHHHHCCCCHHHHCCCCCHHHHHHC---------CEEEEECCCCCC
T ss_conf             9469888995138899999999855740----899998746988885383329987117---------848972267588


Q ss_pred             CCCEEEEEEEEECCCHHHHHHHHHHHHH----HHCCC--------EEEEECCCCHHHHHCCCCCH--HHHHHHHHHHHHC
Q ss_conf             3879998423204713588899999999----85496--------89981786867752387405--6689899999850
Q gi|254781047|r  139 ESRVLCFDEFMITNIADAIILSRLFAAL----FSHGC--------IIVMTSNFIPENLYKDEINR--NVLVSFIELLEKK  204 (404)
Q Consensus       139 ~~~lLCfDEF~V~DiaDAmil~rl~~~l----f~~gv--------~lV~TSN~~P~dLY~~GLqR--~~FlPfI~~lk~~  204 (404)
                      ++.+.++||..-..   .-||..|+..+    |.+|.        .+|+.||--|++  ..||.-  ||||       -+
T Consensus       107 ~A~iaFLDEIfKan---sAILNtLLtilNEr~f~nG~~~~~vPL~~li~ASNElP~~--~~~L~AlyDRfL-------~R  174 (498)
T PRK13531        107 EAEIVFLDEIWKAG---PAILNTLLTAINERRFRNGAHEEKIPMRLLVAASNELPEA--DSSLEALYDRML-------IR  174 (498)
T ss_pred             CCEEEHHHHHHHCC---HHHHHHHHHHHHHHEECCCCCEECCCHHHHHHCCCCCCCC--CCCHHHHHHHHH-------HH
T ss_conf             66131578786148---8999999998646403479831304468864304679999--840788887644-------10


Q ss_pred             CEEEECCCCCHHH
Q ss_conf             5089804731122
Q gi|254781047|r  205 LEIISLDSGQDYR  217 (404)
Q Consensus       205 ~~V~~l~~~~DYR  217 (404)
                      +.|-.+.....++
T Consensus       175 ~~v~~v~~~~nF~  187 (498)
T PRK13531        175 LWLDKVQDKANFR  187 (498)
T ss_pred             EECCCCCCHHHHH
T ss_conf             2231316766799


No 170
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.28  E-value=0.14  Score=29.99  Aligned_cols=68  Identities=22%  Similarity=0.321  Sum_probs=53.5

Q ss_pred             HHHHHHHHHCCCCEEEEEE-EEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCE-
Q ss_conf             7899999961387999842-32047135888999999998549689981786867752387405668989999985050-
Q gi|254781047|r  129 IPLVASSIALESRVLCFDE-FMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLE-  206 (404)
Q Consensus       129 l~~va~~l~~~~~lLCfDE-F~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~-  206 (404)
                      --.+|..|+.+.+||++|| |+=-|++....+-+|+..|-+.|.++++.|--                  +....++|+ 
T Consensus       147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHD------------------L~~v~~~~D~  208 (254)
T COG1121         147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHD------------------LGLVMAYFDR  208 (254)
T ss_pred             HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC------------------CHHHHHHCCE
T ss_conf             9999998536999899668754579878999999999998789889999588------------------1776853887


Q ss_pred             EEECCCCC
Q ss_conf             89804731
Q gi|254781047|r  207 IISLDSGQ  214 (404)
Q Consensus       207 V~~l~~~~  214 (404)
                      |+.|+...
T Consensus       209 vi~Ln~~~  216 (254)
T COG1121         209 VICLNRHL  216 (254)
T ss_pred             EEEECCEE
T ss_conf             99985763


No 171
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.26  E-value=0.16  Score=29.70  Aligned_cols=164  Identities=13%  Similarity=0.094  Sum_probs=92.7

Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf             97005899999999748877898999999999999999861354333225664310246666668864998888877289
Q gi|254781047|r    1 MSLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKS   80 (404)
Q Consensus         1 m~~~~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT   80 (404)
                      ||++.+...|+-.    .+..=-.|..++..|..-..+   .                     .-+.-.-..|+.|+|||
T Consensus         1 msy~~la~KYRP~----~F~dvvGQe~vv~~L~nai~~---~---------------------rl~HAyLFsGprG~GKT   52 (560)
T PRK06647          1 MSYRGTATKRRPR----DFNSLEGQDFVVETLKHSIEK---N---------------------KIANAYIFSGPRGVGKT   52 (560)
T ss_pred             CCCHHHHHHHCCC----CHHHHCCCHHHHHHHHHHHHC---C---------------------CCCCEEEEECCCCCCHH
T ss_conf             9537777642898----654403949999999999974---9---------------------97743663289987899


Q ss_pred             HHHHHHHHHCCCCHHHH-------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH-----HCCCCEEEEEEE
Q ss_conf             99999998578111468-------889999999999999971311224665578078999999-----613879998423
Q gi|254781047|r   81 MLMNLFFALVPIEKKCR-------LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI-----ALESRVLCFDEF  148 (404)
Q Consensus        81 ~LMdlFy~~l~~~~K~R-------~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l-----~~~~~lLCfDEF  148 (404)
                      -+--.|-.++.+.....       -.-......-|-.+.+.....   . ..-|-+..+-+..     ...++|.-+||.
T Consensus        53 t~ArilAk~LnC~~~~~~~PCg~C~sC~~i~~g~~~DviEidaas---n-~~VddIR~l~e~v~~~P~~~~yKV~IIDEa  128 (560)
T PRK06647         53 SSARAFARCLNCVNGPTIMPCGECFSCKSIDNDSSLDVIEIDGAS---N-TSVQDVRQIKEEIMFPPASSRYRVYIIDEV  128 (560)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCC---C-CCHHHHHHHHHHHCCCCCCCCEEEEEECCH
T ss_conf             999999999659999998888788788887459998757643645---4-888999999998632876687069996465


Q ss_pred             EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf             204713588899999999854968998178686775238740566898999998505089804
Q gi|254781047|r  149 MITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD  211 (404)
Q Consensus       149 ~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~  211 (404)
                      |--..+-+=-|-+.++.--.+-+.+.+|.+  |+.+             +..|..+|..+++.
T Consensus       129 hmLt~~A~NALLKtLEEPP~~~~FILaTte--~~KI-------------~~TI~SRCQ~f~Fk  176 (560)
T PRK06647        129 HMLSNSAFNALLKTIEEPPPYIVFIFATTE--VHKL-------------PATIKSRCQHFNFR  176 (560)
T ss_pred             HHCCHHHHHHHHHHHHCCCCCEEEEEECCC--HHHC-------------HHHHHHHHEEEECC
T ss_conf             655999999999986348875599997799--4768-------------48999651041055


No 172
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.21  E-value=0.47  Score=26.72  Aligned_cols=115  Identities=12%  Similarity=0.093  Sum_probs=55.6

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCCCCCCHHHH---
Q ss_conf             86499888887728999999998578------111468889999999999999971311-----2246655780789---
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVP------IEKKCRLHFYEFMKDVHSRIIMYRKKI-----EFGEILESDPIPL---  131 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~------~~~K~R~HFh~FM~~ih~~l~~~~~~~-----~~~~~~~~dpl~~---  131 (404)
                      .+=+.+.+|-|-|||-+|.-+...-.      .... --.-..|...+-.-|...-...     .........++..   
T Consensus        32 ~~l~lv~APaG~GKTtl~a~w~~~~~~~~Wlsld~~-d~~~~~f~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (903)
T PRK04841         32 YRLVLVRSPAGYGKTTLASQWAAGKNNVGWYSLDES-DNQPERFASYLIAALQQATNGHCSKSEALAEKRQYASLTSLFA  110 (903)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCC-CCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHH
T ss_conf             997999779998899999999834998599858854-4899999999999999856543311231135566554999999


Q ss_pred             -HHHHHHCC--CCEEEEEEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEECC-CCHH
Q ss_conf             -99999613--87999842320-4713588899999999854968998178-6867
Q gi|254781047|r  132 -VASSIALE--SRVLCFDEFMI-TNIADAIILSRLFAALFSHGCIIVMTSN-FIPE  182 (404)
Q Consensus       132 -va~~l~~~--~~lLCfDEF~V-~DiaDAmil~rl~~~lf~~gv~lV~TSN-~~P~  182 (404)
                       +..++..-  --+|++|.||. .|..=.-.|..|++.+-. ++.+|.+|= .||-
T Consensus       111 ~l~~~l~~~~~~~~lvlDD~h~i~~~~~~~~l~~Ll~~~p~-~l~lvl~sR~~p~l  165 (903)
T PRK04841        111 QLFIELSDWHQPLYLVLDDYHLITNPEIHEAMRFFLRHQPE-NLTLVVLSRNLPPL  165 (903)
T ss_pred             HHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC-CEEEEEEECCCCCC
T ss_conf             99999755899869998683648886899999999983898-83899876899987


No 173
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids.  RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family.  Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft.  RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%.  The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.21  E-value=0.14  Score=30.08  Aligned_cols=102  Identities=14%  Similarity=0.091  Sum_probs=64.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf             49988888772899999999857811146888999999999999997131122466557807899999961387999842
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDE  147 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDE  147 (404)
                      =+=|-|+=|+|||-|+.+.--.+.... -.+.+..-.      +....+..  .-++..----.+|..++.+.+++.+||
T Consensus        27 iv~ilGpNGaGKSTllk~i~G~l~p~~-G~i~~~g~~------~~~~pq~~--~LSGGqrQRv~iAral~~~p~lllLDE   97 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQLIPNG-DNDEWDGIT------PVYKPQYI--DLSGGELQRVAIAAALLRNATFYLFDE   97 (177)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCC-CCEEECCCC------EECCCCCC--CCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             999989999999999999968867889-946666861------22155515--079899999999999823999999748


Q ss_pred             EE-ECCCHHHHHHHHHHHHHHHCC-CEEEEECC
Q ss_conf             32-047135888999999998549-68998178
Q gi|254781047|r  148 FM-ITNIADAIILSRLFAALFSHG-CIIVMTSN  178 (404)
Q Consensus       148 F~-V~DiaDAmil~rl~~~lf~~g-v~lV~TSN  178 (404)
                      -- =-|+....-+.++++.+.+++ .++|.+|-
T Consensus        98 Pts~LD~~~r~~i~~~ik~l~~~~~~Tvl~vsH  130 (177)
T cd03222          98 PSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH  130 (177)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             865389999999999999999965977999858


No 174
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=94.19  E-value=0.32  Score=27.81  Aligned_cols=123  Identities=16%  Similarity=0.122  Sum_probs=65.3

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH--HHH-HHHHHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHCC
Q ss_conf             68864998888877289999999985781114688899--999-9999999997131122466-5578078999999613
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY--EFM-KDVHSRIIMYRKKIEFGEI-LESDPIPLVASSIALE  139 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh--~FM-~~ih~~l~~~~~~~~~~~~-~~~dpl~~va~~l~~~  139 (404)
                      .+..-|-|.|..|+||..+-...+...+-+.+-=+..+  ..- ..+.+.|+-..+..-.+.. ....-+      ...+
T Consensus       160 ~s~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfv~vnC~~l~~~l~eseLFG~~~gaftga~~~~~g~~------~~A~  233 (441)
T PRK10365        160 PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRF------VEAD  233 (441)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCE------EECC
T ss_conf             8899489989998109999999996578778980798789898455589861775568789653468987------7889


Q ss_pred             CCEEEEEEEEECCCHHHHHHHHHHHHHHH-------------CCCEEEEECCCCHHHHHCCCCCHHHHH
Q ss_conf             87999842320471358889999999985-------------496899817868677523874056689
Q gi|254781047|r  140 SRVLCFDEFMITNIADAIILSRLFAALFS-------------HGCIIVMTSNFIPENLYKDEINRNVLV  195 (404)
Q Consensus       140 ~~lLCfDEF~V~DiaDAmil~rl~~~lf~-------------~gv~lV~TSN~~P~dLY~~GLqR~~Fl  195 (404)
                      .--|++||..--+..   +=.+|+..|-+             -.+.+|++||+...++-..|..|+.+.
T Consensus       234 gGTLfLdeI~~l~~~---~Q~kLl~~l~~~~~~~~g~~~~~~~d~RiIaat~~~l~~~v~~g~Fr~dLy  299 (441)
T PRK10365        234 GGTLFLDEIGDISPM---MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLY  299 (441)
T ss_pred             CCEECCCCCCCCCHH---HHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCCHHHHHHCCCCHHHHH
T ss_conf             982550231529999---999999877752100058873441363799837889999988198258999


No 175
>PRK13544 consensus
Probab=94.14  E-value=0.49  Score=26.63  Aligned_cols=64  Identities=13%  Similarity=0.166  Sum_probs=44.9

Q ss_pred             HHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEE
Q ss_conf             8999999613879998423-204713588899999999854968998178686775238740566898999998505089
Q gi|254781047|r  130 PLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEII  208 (404)
Q Consensus       130 ~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~  208 (404)
                      -.+|..++.+.+++.+||= -=-|+...-++..++..+-++|.++|.||....                  .+..-|+++
T Consensus       135 v~la~aL~~~~~illLDEPt~gLD~~s~~~i~~~i~~~~~~g~~vIi~sHd~~------------------e~~~~cd~i  196 (208)
T PRK13544        135 VALSRLLIYNTNVWIIDEPFANLDSATKELILELILTRLEQNGIVIISDHSKT------------------ETYGECQVI  196 (208)
T ss_pred             HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH------------------HHHHHCCEE
T ss_conf             99999985699999997986668999999999999999868999999869999------------------999768999


Q ss_pred             ECC
Q ss_conf             804
Q gi|254781047|r  209 SLD  211 (404)
Q Consensus       209 ~l~  211 (404)
                      .|+
T Consensus       197 ~l~  199 (208)
T PRK13544        197 NLE  199 (208)
T ss_pred             EEC
T ss_conf             803


No 176
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251   This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=94.14  E-value=0.04  Score=33.51  Aligned_cols=141  Identities=16%  Similarity=0.242  Sum_probs=72.3

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH--HHHHHHHHHHHHHCCCCCCCCCCCCHHH-----------
Q ss_conf             688649988888772899999999857811146888999--9999999999971311224665578078-----------
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYE--FMKDVHSRIIMYRKKIEFGEILESDPIP-----------  130 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~--FM~~ih~~l~~~~~~~~~~~~~~~dpl~-----------  130 (404)
                      +-||=|=||||+|+|||==--|-.+-+.... . -=|.+  =..||-+.      +.+-.+.+-.|||-           
T Consensus        84 PNPQHVIiYGPPGVGKTAAARLVLeeAKk~~-~-SPFke~A~FVEiDAT------T~RFDERGIADPLIGSVHDPIYQGA  155 (532)
T TIGR02902        84 PNPQHVIIYGPPGVGKTAAARLVLEEAKKNP-A-SPFKEEAAFVEIDAT------TARFDERGIADPLIGSVHDPIYQGA  155 (532)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHCCC-C-CCCCCCCEEEEEECC------CCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             6896389878869617899999999865087-5-378988668985051------0360214666656776158533376


Q ss_pred             -----------HHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEE----EECCC----CHHHHHCCCCC
Q ss_conf             -----------999999613879998423-20471358889999999985496899----81786----86775238740
Q gi|254781047|r  131 -----------LVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIV----MTSNF----IPENLYKDEIN  190 (404)
Q Consensus       131 -----------~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV----~TSN~----~P~dLY~~GLq  190 (404)
                                 +-..=-....=|||+||- ++|=    ..|.+||+-|=+++|+|=    ..||.    +-.|...||| 
T Consensus       156 GplG~AGIPQPK~GAVT~AHGGvLFIDEIGELHP----~~MNKLLKVLEDRKVFLdSAYY~s~~pniP~hI~dIFqnGl-  230 (532)
T TIGR02902       156 GPLGVAGIPQPKPGAVTKAHGGVLFIDEIGELHP----VQMNKLLKVLEDRKVFLDSAYYSSEDPNIPSHIRDIFQNGL-  230 (532)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCH----HHHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHCCCC-
T ss_conf             5457885575877763202586551212466582----43531411330222000012358777865427899720678-


Q ss_pred             HHHHHHHHHHHHHCCEEEECCCCCHHHHCCCCC--------------CCEEEECCCHHHHHHH
Q ss_conf             566898999998505089804731122112367--------------8302203530226899
Q gi|254781047|r  191 RNVLVSFIELLEKKLEIISLDSGQDYRRKEQSI--------------LPIYMTPLNSYNRVLM  239 (404)
Q Consensus       191 R~~FlPfI~~lk~~~~V~~l~~~~DYR~~~~~~--------------~~~y~~p~~~~~~~~l  239 (404)
                                            +=|||+-..+-              ..+||-|++.+--++.
T Consensus       231 ----------------------PADFRLiGATTR~PeEIpPAlRSRC~EIFFR~L~~EEi~~i  271 (532)
T TIGR02902       231 ----------------------PADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLKEEIKEI  271 (532)
T ss_pred             ----------------------CCCEECCCCCCCCCCCCCHHHHCCCEEEEECCCCHHHHHHH
T ss_conf             ----------------------73401213336987767834650522677168887899999


No 177
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota.  The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed.  The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways.  Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO.  Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.13  E-value=0.29  Score=28.09  Aligned_cols=25  Identities=32%  Similarity=0.453  Sum_probs=21.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             4998888877289999999985781
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      =+=|-|+=|.|||-|+.+..-.++.
T Consensus        28 i~~iiG~nGaGKSTLl~~i~Gl~~p   52 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGLIKE   52 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf             9999889999899999999568577


No 178
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=94.13  E-value=0.49  Score=26.61  Aligned_cols=16  Identities=19%  Similarity=0.569  Sum_probs=13.9

Q ss_pred             EEEEECCCCCCHHHHH
Q ss_conf             4998888877289999
Q gi|254781047|r   68 GIYLHGDVGQGKSMLM   83 (404)
Q Consensus        68 GlYL~G~VG~GKT~LM   83 (404)
                      -+.+-++.|.|||...
T Consensus        16 ~~iv~~pTGsGKT~~~   31 (167)
T pfam00270        16 DVLVQAPTGSGKTLAF   31 (167)
T ss_pred             CEEEECCCCCCHHHHH
T ss_conf             7899889997589999


No 179
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.05  E-value=0.11  Score=30.80  Aligned_cols=131  Identities=15%  Similarity=0.175  Sum_probs=76.8

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH-----CC
Q ss_conf             8864998888877289999999985781114688899999999999999713112246655780789999996-----13
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIA-----LE  139 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~-----~~  139 (404)
                      -|....++|+-|.||+-+...|-..+-....- -.=+.+...+|-.++...-... +....-|-+..+.+.+.     ..
T Consensus        18 l~HAyLf~Gp~G~GK~~~A~~~A~~LLc~~~p-~~~~~i~~~~HPD~~~i~pe~k-~~~~~Id~iR~l~~~i~~~p~~g~   95 (290)
T PRK05917         18 VPSAILLHGQDLSNLSQYAYELASLILLESSP-EAQYKISQKIHPDIHEFFPEGK-GRLHSIETPRAIKKQIWIHPYEAN   95 (290)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHCCCCCEEEECCCCC-CCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf             66068768999865999999999998578996-1688987468998599615777-887867899999999641864688


Q ss_pred             CCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf             8799984232047135888999999998549689981786867752387405668989999985050898047
Q gi|254781047|r  140 SRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS  212 (404)
Q Consensus       140 ~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~  212 (404)
                      ++|.-+||-+--..+-|=-|=+++|.=-.+-+.+.+|++  |+.|             ...|..+|..+++..
T Consensus        96 ~KV~IId~Ad~Mn~~AaNALLKtLEEPP~~tvfILit~~--~~~l-------------LpTI~SRCQ~I~i~~  153 (290)
T PRK05917         96 YKIYIIHEADRMTLDAISAFLKVLEDPPKHSVIILTSAK--PQRL-------------PPTIRSRSLSIHIPG  153 (290)
T ss_pred             CEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEECC--HHHC-------------CHHHHHCCCEEECCC
T ss_conf             269997567763899999999973479878599998699--2548-------------237763351167776


No 180
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.99  E-value=0.52  Score=26.45  Aligned_cols=126  Identities=17%  Similarity=0.249  Sum_probs=72.8

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHHHHHHH------HCC-------------CCC
Q ss_conf             86499888887728999999998578111------46888999999999999997------131-------------122
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEK------KCRLHFYEFMKDVHSRIIMY------RKK-------------IEF  120 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~------K~R~HFh~FM~~ih~~l~~~------~~~-------------~~~  120 (404)
                      +.+.-++|+-|.||+.+--.|-..+-...      ..|+     ...-|-.++..      .++             .+.
T Consensus        26 ~hAyLF~Gp~G~GK~~~A~~fa~~Ll~~~~~~~~~~~ri-----~~~nHPDl~~i~P~~~~~g~~~~~~~~~~~~~~~~~  100 (314)
T PRK07399         26 APAYLFAGPEGVGRKLAALRFIEGLLSQGSPSKNIRRRL-----EEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKS  100 (314)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHH-----HCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             744877899983299999999999857899997665587-----518999778860562003454557789876530268


Q ss_pred             CCCCCCCHHHHHHHHH-----HCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHH
Q ss_conf             4665578078999999-----61387999842320471358889999999985496899817868677523874056689
Q gi|254781047|r  121 GEILESDPIPLVASSI-----ALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLV  195 (404)
Q Consensus       121 ~~~~~~dpl~~va~~l-----~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~Fl  195 (404)
                      .....-|-+..+.+.+     -...+|.-+|+.+--..+-|=-|=+.++. =.+++++..|+|  |+.|           
T Consensus       101 ~~~I~idqIR~l~~~l~~~p~~~~~kVvII~~ae~m~~~AaNaLLKtLEE-P~~~~fILit~~--~~~l-----------  166 (314)
T PRK07399        101 PPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE-PGNGTLILIAPS--PESL-----------  166 (314)
T ss_pred             CCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCC-CCCCEEEEEECC--HHHC-----------
T ss_conf             77787999999999973188568847999889787199999999986147-878569999799--3649-----------


Q ss_pred             HHHHHHHHCCEEEECCC
Q ss_conf             89999985050898047
Q gi|254781047|r  196 SFIELLEKKLEIISLDS  212 (404)
Q Consensus       196 PfI~~lk~~~~V~~l~~  212 (404)
                        +..|..+|..+++..
T Consensus       167 --LpTI~SRCQ~i~F~~  181 (314)
T PRK07399        167 --LPTIVSRCQIIPFYR  181 (314)
T ss_pred             --CHHHHCCCEEEECCC
T ss_conf             --146641875633899


No 181
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=93.97  E-value=0.073  Score=31.90  Aligned_cols=21  Identities=38%  Similarity=0.706  Sum_probs=16.2

Q ss_pred             EEEECCCCCCHHHHH-HHHHHH
Q ss_conf             998888877289999-999985
Q gi|254781047|r   69 IYLHGDVGQGKSMLM-NLFFAL   89 (404)
Q Consensus        69 lYL~G~VG~GKT~LM-dlFy~~   89 (404)
                      +-+.|++|+|||.|. ++|++.
T Consensus         4 ~~V~G~pGtGKTvv~l~l~~~l   25 (348)
T pfam09848         4 FLVTGGPGTGKTVVALNLFAEL   25 (348)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
T ss_conf             9997779938999999999998


No 182
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.91  E-value=0.53  Score=26.42  Aligned_cols=114  Identities=21%  Similarity=0.213  Sum_probs=68.1

Q ss_pred             CCCCCCE-EEEECCCCCCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCHHHHHHH
Q ss_conf             6668864-998888877289999999985781--11468889999999999999971311----2246655780789999
Q gi|254781047|r   62 KYCSMQG-IYLHGDVGQGKSMLMNLFFALVPI--EKKCRLHFYEFMKDVHSRIIMYRKKI----EFGEILESDPIPLVAS  134 (404)
Q Consensus        62 ~~~~~kG-lYL~G~VG~GKT~LMdlFy~~l~~--~~K~R~HFh~FM~~ih~~l~~~~~~~----~~~~~~~~dpl~~va~  134 (404)
                      .+..|-| +..-|+-|+|||-|....-+.+=.  ..--|+.--+||-.  .....+-|..    +..++++  -.+.|  
T Consensus       534 ~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~DMSEy~E~--hsvsrLIGaPPGYVGy~eGG~--LTeaV--  607 (823)
T CHL00095        534 NPNRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLDMSEYMEK--HTVSKLIGSPPGYVGYNEGGQ--LTEAV--  607 (823)
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC--CCHHHHCCCCCCCCCCCCCCC--HHHHH--
T ss_conf             899974689987899887799999999997478202588535101554--207674589987667787882--01988--


Q ss_pred             HHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHC--------------CCEEEEECCCCHHHHHC
Q ss_conf             99613879998423204713588899999999854--------------96899817868677523
Q gi|254781047|r  135 SIALESRVLCFDEFMITNIADAIILSRLFAALFSH--------------GCIIVMTSNFIPENLYK  186 (404)
Q Consensus       135 ~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~--------------gv~lV~TSN~~P~dLY~  186 (404)
                       =-+-+-|+.|||++=-+   .=++.-|++ +++.              ++++|+|||.--+.+.+
T Consensus       608 -rr~PysVvLfDEIEKAH---pdV~nilLQ-vlDdG~LtD~~Gr~vdF~NtIIImTSNlGs~~i~~  668 (823)
T CHL00095        608 -RKKPYTVVLFDEIEKAH---PDIFNLLLQ-ILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIEK  668 (823)
T ss_pred             -HCCCCEEEEECHHHHCC---HHHHHHHHH-HCCCCCCCCCCCCEEECEEEEEEECCCCCHHHHHH
T ss_conf             -71998699862131138---899998876-51688434899998843103999716505588874


No 183
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.90  E-value=0.37  Score=27.42  Aligned_cols=126  Identities=12%  Similarity=0.116  Sum_probs=69.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCHHHH--------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH---
Q ss_conf             6499888887728999999998578111468--------88999999999999997131122466557807899999---
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCR--------LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASS---  135 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R--------~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~---  135 (404)
                      ...-..|+-|+|||-+.-.|-.++.+....-        -.=-++...-|..+.+......   . +-|-+..+.+.   
T Consensus        40 HAyLF~GprGtGKTT~ArilAkaLnC~~~~~~~~pCg~C~~C~~I~~g~~~DViEiDaAs~---~-gVddIRel~e~v~~  115 (462)
T PRK06305         40 HAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAICKEISSGTSLDVIEIDGASH---R-GIEDIRQINETVLF  115 (462)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCC---C-CHHHHHHHHHHHCC
T ss_conf             2343038998599999999999967999988889887668889986389998686435534---4-66899999977100


Q ss_pred             --HHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf             --9613879998423204713588899999999854968998178686775238740566898999998505089804
Q gi|254781047|r  136 --IALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD  211 (404)
Q Consensus       136 --l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~  211 (404)
                        ....++|.-+||.|--.-+-.=-|-+.++.-=.+-+++.+|.+  |+.+             +..|..+|..+++.
T Consensus       116 ~P~~~~yKVyIIDEvhmLs~~AfNALLKtLEEPP~~v~FILaTTe--~~KI-------------p~TIlSRCQrf~F~  178 (462)
T PRK06305        116 TPSKSQYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTE--IHKI-------------PGTILSRCQKMHLK  178 (462)
T ss_pred             CCCCCCEEEEEEECHHHCCHHHHHHHHHHHHCCCCCEEEEEEECC--HHHC-------------CHHHHHHHHEEECC
T ss_conf             886775059998152117999999999986189877499998188--1428-------------54787654023325


No 184
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors.  The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan.  The pigment precursors are encoded by the white, brown, and scarlet genes, respectively.  Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan.  However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes.  Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in 
Probab=93.79  E-value=0.57  Score=26.21  Aligned_cols=55  Identities=20%  Similarity=0.205  Sum_probs=35.6

Q ss_pred             HHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf             8999999613879998423-204713588899999999854968998178686775
Q gi|254781047|r  130 PLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL  184 (404)
Q Consensus       130 ~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL  184 (404)
                      -.+|..|+.+-++|++||= -=-|+..+.-+-+++..+-+.|.++|.|+-.+-+++
T Consensus       152 v~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~l~~~~~~vi~~~H~~~~~~  207 (226)
T cd03234         152 VSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDL  207 (226)
T ss_pred             HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
T ss_conf             99999996599989995886568999999999999999978999999988898999


No 185
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=93.62  E-value=0.19  Score=29.29  Aligned_cols=70  Identities=19%  Similarity=0.277  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             6899999853788998189878724638999899999998228982899807897880134676531348998988745
Q gi|254781047|r  289 ANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLYE  367 (404)
Q Consensus       289 ~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~E  367 (404)
                      ..++.+-.+..+.++|+||..+.. ......-+-++|+.+.+++.++++++..+|.++-    .    .-.+=.|||.-
T Consensus        88 ~~~f~~~l~~~d~l~iDDi~~l~~-~~~~ee~lf~l~N~~~~~~~~lllts~~~p~~l~----~----~~~dL~SRL~~  157 (219)
T pfam00308        88 IEAFKKSYRNVDLLLIDDIQFLAG-KEKTQEEFFHTFNALHENNKQIVLTSDRPPKELE----G----FEDRLRSRFEW  157 (219)
T ss_pred             HHHHHHHHHHCCHHHHCCHHHHCC-CHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC----C----CCHHHHHHHHC
T ss_conf             889999976323365223676568-6478999999999999729869997799810024----5----32779999868


No 186
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity.  In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins.  Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family.  The ATP-binding domain shows the highest similarity between all members of the ABC transporter family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.53  E-value=0.029  Score=34.40  Aligned_cols=111  Identities=17%  Similarity=0.213  Sum_probs=68.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-----------------CCCCCCCHHHH
Q ss_conf             9988888772899999999857811146888999999999999997131122-----------------46655780789
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEF-----------------GEILESDPIPL  131 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~-----------------~~~~~~dpl~~  131 (404)
                      +-|-|+-|.|||-||.+....++... -++.+..-  +++..-...+...+.                 .-++..---..
T Consensus        29 ~gl~G~NGaGKSTLl~~i~Gl~~p~~-G~i~i~g~--~~~~~~~~~~~~ig~v~q~~~l~~~ltv~e~l~LSgG~kqrv~  105 (173)
T cd03230          29 YGLLGPNGAGKTTLIKIILGLLKPDS-GEIKVLGK--DIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLA  105 (173)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCCCC-CEEEECCE--ECCCCHHHHHCCEEEEECCCCCCCCCCHHHHHHCCHHHHHHHH
T ss_conf             99987899799999999976857787-88999999--9886848886578999568766712677898633989999999


Q ss_pred             HHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf             99999613879998423-2047135888999999998549689981786867
Q gi|254781047|r  132 VASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPE  182 (404)
Q Consensus       132 va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~  182 (404)
                      +|..++.+.++|++||= -=-|+.....+..++..+-++|..+|.+|....+
T Consensus       106 ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~i~~l~~~g~tvi~~tH~l~~  157 (173)
T cd03230         106 LAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEE  157 (173)
T ss_pred             HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
T ss_conf             9999964999999908865799999999999999999689999999283899


No 187
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=93.50  E-value=0.043  Score=33.35  Aligned_cols=122  Identities=22%  Similarity=0.242  Sum_probs=59.6

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHH---HHCCCCCCCCCCCCHHHHHH------
Q ss_conf             688649988888772899999999857811-14688899999999999999---71311224665578078999------
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIE-KKCRLHFYEFMKDVHSRIIM---YRKKIEFGEILESDPIPLVA------  133 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~-~K~R~HFh~FM~~ih~~l~~---~~~~~~~~~~~~~dpl~~va------  133 (404)
                      ..-.++.++|++|+|||||-.=.-.-+|.- ...=+-+..-+.-. ..++.   .........+++.-......      
T Consensus       196 AGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~-~~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p  274 (490)
T COG0606         196 AGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA-GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVP  274 (490)
T ss_pred             HCCCCEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC-CCCCCCCCCCEECCCCCCCCCCHHHHHHCCCCCC
T ss_conf             438867875699886567642310259998708889998887635-4324678641107876887402288973789988


Q ss_pred             --HHH-HCCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHHCCCE----------------EEEECCCCHHHHHCCCCCH
Q ss_conf             --999-6138799984232-04713588899999999854968----------------9981786867752387405
Q gi|254781047|r  134 --SSI-ALESRVLCFDEFM-ITNIADAIILSRLFAALFSHGCI----------------IVMTSNFIPENLYKDEINR  191 (404)
Q Consensus       134 --~~l-~~~~~lLCfDEF~-V~DiaDAmil~rl~~~lf~~gv~----------------lV~TSN~~P~dLY~~GLqR  191 (404)
                        -++ ....-||++||+- -.+    -+|.+|-+-| +.|-+                +|+..|-.|-.-|.++++|
T Consensus       275 ~PGeIsLAH~GVLFLDElpef~~----~iLe~LR~PL-E~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~  347 (490)
T COG0606         275 RPGEISLAHNGVLFLDELPEFKR----SILEALREPL-ENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRR  347 (490)
T ss_pred             CCCCEEEECCCEEEEECCCHHHH----HHHHHHHCCC-CCCCEEEEECCCEEEEEEEEEEHHHCCCCCCCCCCCCCCC
T ss_conf             98735430387788614421059----9999973741-2581799975871687212677522399976478887777


No 188
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=93.45  E-value=0.075  Score=31.82  Aligned_cols=209  Identities=16%  Similarity=0.182  Sum_probs=92.3

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH-HHHHHCCCCEE
Q ss_conf             88649988888772899999999857811146888999999999999997131122466557807899-99996138799
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLV-ASSIALESRVL  143 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~v-a~~l~~~~~lL  143 (404)
                      ..|=+||+|+||.|||-|...+-..+..-.                +..+++     -+-.++||..+ ..++....   
T Consensus        84 ~kqIllL~GPVGsGKSsl~e~LK~glE~y~----------------~Y~i~g-----sPm~e~PL~L~~p~~~r~~l---  139 (358)
T pfam08298        84 RKQILYLLGPVGGGKSSLAERLKKLLELVP----------------IYALKG-----SPVFESPLHLFNPHHLRDIL---  139 (358)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHCCCC----------------EEEECC-----CCCCCCCCCCCCHHHHHHHH---
T ss_conf             105899977898775899999998720586----------------488448-----97778985477867759999---


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHCCCCC
Q ss_conf             98423204713588899999999854968998178686775238740566898999998505089804731122112367
Q gi|254781047|r  144 CFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSI  223 (404)
Q Consensus       144 CfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DYR~~~~~~  223 (404)
                       -+|+-+.+.                    -....-.|       ..|.+.--+=.-+ +++.|..+--.+.+|..-.  
T Consensus       140 -e~~~gi~~~--------------------~i~g~l~P-------~~~~rL~e~~Gd~-~~~~V~r~~~S~~~r~gi~--  188 (358)
T pfam08298       140 -EDEYGIPRR--------------------RLEGDLSP-------WCTKRLEEFGGDI-EKFKVVKIFPSILRQIGIA--  188 (358)
T ss_pred             -HHHHCCCHH--------------------HCCCCCCH-------HHHHHHHHHCCCH-HHEEEEEECCCCCCCEEEE--
T ss_conf             -987499521--------------------20898898-------9999999938985-5278999555600456899--


Q ss_pred             CCEEEECCCHHHHH---HHHH-HHHHHCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHH----
Q ss_conf             83022035302268---9999-999860444467763276368089961220211110199985210246899999----
Q gi|254781047|r  224 LPIYMTPLNSYNRV---LMDK-LWAHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEI----  295 (404)
Q Consensus       224 ~~~y~~p~~~~~~~---~l~~-~f~~l~~~~~~~~~~i~v~~gR~i~v~~~~~~va~f~F~eLC~~~lg~~DYi~I----  295 (404)
                         -+.|.|+.++.   ...+ -+.++..-.+.-+. .     -.+.-..+.++-..+.|.|+...|.-.--++--    
T Consensus       189 ---t~~P~D~~nqD~s~L~G~vdi~kl~~~~~~dP~-a-----~~~~G~l~~aNrGl~efvE~~K~~~~~L~~lL~atQE  259 (358)
T pfam08298       189 ---KTEPGDENNQDISALVGKVDIRKLEEYSQNDPD-A-----YSYSGALNRANQGLMEFVEMFKAPIKVLHPLLTATQE  259 (358)
T ss_pred             ---EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC-E-----ECCCCCEECCCCCCEEEHHHHCCCHHHHHHHHCCCCC
T ss_conf             ---968999876337787433209877410447984-2-----4567700003577554098761829999998522124


Q ss_pred             -----HHHCCEEEECCCCCCCCCCHHHHHHHH------HHHHHHHCCCCCEEEE
Q ss_conf             -----853788998189878724638999899------9999982289828998
Q gi|254781047|r  296 -----ANRFDVVIINDIPLLKEDRKDWIKRFI------MLIDVFYEHKIGLIIS  338 (404)
Q Consensus       296 -----a~~f~ti~I~~VP~l~~~~~d~arRFI------~LID~lYd~kv~Li~s  338 (404)
                           .++|..|-++.|- ++-.|..+-++|.      .|+|.++--+++-.+.
T Consensus       260 ~~i~~~~~~~~i~~D~vI-iahsNe~E~~~f~~~~~~eA~~dR~~~v~vPY~lr  312 (358)
T pfam08298       260 GNYNSTEKFSAIPFDGII-LAHSNESEWNSFKSNKNNEAFLDRIVVIKVPYCLR  312 (358)
T ss_pred             CCCCCCCCCCCEECCEEE-ECCCCHHHHHHHHCCCCCHHHHCCEEEEECCCCCC
T ss_conf             622477875603314268-76898499998744864346656379996763267


No 189
>KOG2543 consensus
Probab=93.44  E-value=0.65  Score=25.83  Aligned_cols=121  Identities=21%  Similarity=0.255  Sum_probs=68.1

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHH---HH--HHHHHHHHHHHHHHHHHHCCCCCCCCCC------CCHHHHH
Q ss_conf             68864998888877289999999985781114---68--8899999999999999713112246655------7807899
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKK---CR--LHFYEFMKDVHSRIIMYRKKIEFGEILE------SDPIPLV  132 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K---~R--~HFh~FM~~ih~~l~~~~~~~~~~~~~~------~dpl~~v  132 (404)
                      ..|--++|||.-|+|||.+.-.++..+..+.-   .+  +-.-.+..   +-+.........+....      .|-+...
T Consensus        28 ~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle---~IL~~~~~~d~dg~~~~~~~en~~d~i~~l  104 (438)
T KOG2543          28 TIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLE---KILNKSQLADKDGDKVEGDAENFSDFIYLL  104 (438)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEHHHHCCHHHHHH---HHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             66515799614787455999999860378630541577516799999---999873567874055542799999999999


Q ss_pred             HH--HHHC--CCCEEEEEEEEECCCHHHHHHHHHHH--HHHHCCCEEEEECCCCHHHHHCC
Q ss_conf             99--9961--38799984232047135888999999--99854968998178686775238
Q gi|254781047|r  133 AS--SIAL--ESRVLCFDEFMITNIADAIILSRLFA--ALFSHGCIIVMTSNFIPENLYKD  187 (404)
Q Consensus       133 a~--~l~~--~~~lLCfDEF~V~DiaDAmil~rl~~--~lf~~gv~lV~TSN~~P~dLY~~  187 (404)
                      .+  +..+  +.-+|.+|-++---=.||.++..||+  .+.+.....|.+|-.++++-|..
T Consensus       105 ~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~  165 (438)
T KOG2543         105 VQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLI  165 (438)
T ss_pred             HHHHHHHCCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHC
T ss_conf             8447764467449999747776630650788999989987377736999832666777521


No 190
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.43  E-value=0.26  Score=28.36  Aligned_cols=25  Identities=24%  Similarity=0.413  Sum_probs=21.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             4998888877289999999985781
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      =+-|-|+=|.|||-|+.+..-.++.
T Consensus        29 ~~~l~G~NGaGKSTLl~~l~Gl~~p   53 (204)
T PRK13538         29 LVQIEGPNGAGKTSLLRILAGLARP   53 (204)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf             9999999998599999999768888


No 191
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=93.36  E-value=0.67  Score=25.76  Aligned_cols=53  Identities=26%  Similarity=0.333  Sum_probs=45.8

Q ss_pred             HHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf             8999999613879998423-2047135888999999998549689981786867
Q gi|254781047|r  130 PLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPE  182 (404)
Q Consensus       130 ~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~  182 (404)
                      -.+|+.++.+-++|.+||= ---|+...--|..++..|-+.|+.+|..|++..+
T Consensus       144 v~iA~aL~~~p~lLiLDEPTs~LD~~~~~~l~~~l~~l~~~g~tii~i~h~l~~  197 (490)
T PRK10938        144 TLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDE  197 (490)
T ss_pred             HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf             999999707998999837433699999999999999999649917999545999


No 192
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277   This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=93.33  E-value=0.21  Score=28.99  Aligned_cols=30  Identities=17%  Similarity=0.342  Sum_probs=23.9

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCH
Q ss_conf             886499888887728999999998578111
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEK   94 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~   94 (404)
                      .|.-|-|||.-|+|||....-+.+.+....
T Consensus        42 ~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~   71 (383)
T TIGR02928        42 RPSNIFIYGKTGTGKTAVTKYVMKELEEAA   71 (383)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf             987258878889878899999999999986


No 193
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor.  The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids.  RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family.  Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft.  RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%.  The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.33  E-value=0.58  Score=26.19  Aligned_cols=110  Identities=9%  Similarity=0.138  Sum_probs=56.5

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCH-H-----HHHHH------HHHHHHHHHHHHH-----------------------
Q ss_conf             99888887728999999998578111-4-----68889------9999999999999-----------------------
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALVPIEK-K-----CRLHF------YEFMKDVHSRIIM-----------------------  113 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l~~~~-K-----~R~HF------h~FM~~ih~~l~~-----------------------  113 (404)
                      +=|-|+=|+|||-|+.+....++... .     ..+-|      -.|...+.+.+..                       
T Consensus        28 v~liGpNGaGKSTLlk~l~Gll~p~~G~I~~~g~~i~~~pq~~~~~~~~tv~~~l~~~~~~~~~~~~~~~e~~~~l~l~~  107 (246)
T cd03237          28 IGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQ  107 (246)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHH
T ss_conf             99997999769999999977878886079989820576874332577727999999886431212799999998849956


Q ss_pred             HHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHH-CCCEEEEECC
Q ss_conf             713112246655780789999996138799984232-0471358889999999985-4968998178
Q gi|254781047|r  114 YRKKIEFGEILESDPIPLVASSIALESRVLCFDEFM-ITNIADAIILSRLFAALFS-HGCIIVMTSN  178 (404)
Q Consensus       114 ~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF~-V~DiaDAmil~rl~~~lf~-~gv~lV~TSN  178 (404)
                      +..+.-..-++..----.+|..|+.+.++|.+||=- =-|+...+.+-+++..|.+ .|.++|++|-
T Consensus       108 ~~~r~~~~LSGGqkQRv~iA~aL~~~p~ilLLDEPts~LD~~~~~~i~~~i~~l~~~~~~Tvi~VtH  174 (246)
T cd03237         108 ILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH  174 (246)
T ss_pred             HHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             7648700289859999999999841999999848987689999999999999999867989999837


No 194
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=93.29  E-value=0.076  Score=31.78  Aligned_cols=75  Identities=20%  Similarity=0.315  Sum_probs=42.3

Q ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC----------CCHHH-HHHHCCC--------C----CCCCCC
Q ss_conf             99999974887789899999999999999986135433----------32256-6431024--------6----666668
Q gi|254781047|r    9 RLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQE----------QGIFS-WLWNLRG--------I----KRKYCS   65 (404)
Q Consensus         9 ~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~----------~~~~~-~~~~~~~--------~----~~~~~~   65 (404)
                      .|.++|.+     ||.  .+-.+.+++++.+..+....          -.+|. .+++...        .    ..-...
T Consensus         5 eYL~lv~~-----~P~--v~~~A~qrl~dmI~~~G~~~~~~~~~~i~ry~~F~d~~fG~e~~i~~~V~~~k~AA~g~~~~   77 (361)
T smart00763        5 EYLDIVKE-----DPL--VAANAHQRLLDMIGEAGVEDVVENNRGIKRYRFFDHDFFGMEEAIERFVNYFKSAAQGLEER   77 (361)
T ss_pred             HHHHHHHH-----CHH--HHHHHHHHHHHHHHCCCEEEECCCCCEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99999986-----929--88769999999986679188137996078550110131164899999999999998446712


Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf             8649988888772899999999857
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALV   90 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l   90 (404)
                      .|=+||+|+||.|||-|.+.+-..+
T Consensus        78 k~IllL~GPvGsGKStl~~~Lk~~l  102 (361)
T smart00763       78 KQILYLLGPVGGGKSSLVECLKRGL  102 (361)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             5699998899887799999999999


No 195
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=93.27  E-value=0.69  Score=25.67  Aligned_cols=40  Identities=30%  Similarity=0.455  Sum_probs=25.8

Q ss_pred             CCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf             3879998423-204713588899999999854968998178
Q gi|254781047|r  139 ESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSN  178 (404)
Q Consensus       139 ~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN  178 (404)
                      +.++|.+||= ---|+.....+.++++.+-++|..+|++|-
T Consensus       148 ~p~illLDEPt~gLD~~~~~~l~~~i~~l~~~g~tIi~vtH  188 (245)
T PRK03695        148 AGQLLLLDEPMNSLDVAQQSALDRLLSELCQQGIAVVMSSH  188 (245)
T ss_pred             CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             88789973876678999999999999999847999999942


No 196
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=93.25  E-value=0.7  Score=25.65  Aligned_cols=50  Identities=18%  Similarity=0.221  Sum_probs=32.9

Q ss_pred             HHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             8999999613879998423-2047135888999999998549689981786
Q gi|254781047|r  130 PLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNF  179 (404)
Q Consensus       130 ~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~  179 (404)
                      -.+|..++.+-++|.+||= -=-|+....-+.++++.+-+.|+.+|.+|-.
T Consensus       146 v~iAraL~~~P~illLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvl~~tHd  196 (241)
T PRK10895        146 VEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHN  196 (241)
T ss_pred             HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             999999966998899958754799999999999999999649999999072


No 197
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP.  Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.13  E-value=0.73  Score=25.53  Aligned_cols=24  Identities=33%  Similarity=0.426  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             499888887728999999998578
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      =+=|-|+=|+|||-|+++..--.+
T Consensus        26 ~~~ilGpSGsGKSTLl~li~Gl~~   49 (211)
T cd03298          26 ITAIVGPSGSGKSTLLNLIAGFET   49 (211)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999999999559999999976999


No 198
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.12  E-value=0.6  Score=26.09  Aligned_cols=113  Identities=19%  Similarity=0.231  Sum_probs=67.9

Q ss_pred             CCCCCCCEEEEE-CCCCCCHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCHHHHHH
Q ss_conf             666688649988-888772899999999857811--1468889999999999999971311----224665578078999
Q gi|254781047|r   61 RKYCSMQGIYLH-GDVGQGKSMLMNLFFALVPIE--KKCRLHFYEFMKDVHSRIIMYRKKI----EFGEILESDPIPLVA  133 (404)
Q Consensus        61 ~~~~~~kGlYL~-G~VG~GKT~LMdlFy~~l~~~--~K~R~HFh~FM~~ih~~l~~~~~~~----~~~~~~~~dpl~~va  133 (404)
                      ..+..|-|.+|. |+-|+|||-|-..+-+.+=..  .--|+.-.+||-. | ....+-|..    +..+++   -|...+
T Consensus       592 ~dp~rPiGsFLFlGPTGVGKTElAK~LA~~LF~~e~~liriDMSEy~E~-h-sVSrLiGaPPGYVGy~eGG---~LTeaV  666 (857)
T PRK10865        592 SDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEK-H-SVSRLVGAPPGYVGYEEGG---YLTEAV  666 (857)
T ss_pred             CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHEEEECCHHHCCC-H-HHHHHCCCCCCCCCCCCCC---CHHHHH
T ss_conf             9999973899986898788899999999998389334256253321130-1-2767558998766757788---110999


Q ss_pred             HHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHC--------------CCEEEEECCCCHHHH
Q ss_conf             999613879998423204713588899999999854--------------968998178686775
Q gi|254781047|r  134 SSIALESRVLCFDEFMITNIADAIILSRLFAALFSH--------------GCIIVMTSNFIPENL  184 (404)
Q Consensus       134 ~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~--------------gv~lV~TSN~~P~dL  184 (404)
                        --+-+-|+.|||++=-   +.=++.-|++ +++.              ++++|+|||.--+.+
T Consensus       667 --Rr~PySVvLfDEIEKA---HpdV~nilLQ-vlD~G~LtD~~Gr~vdF~NtIIImTSN~Gs~~i  725 (857)
T PRK10865        667 --RRRPYSVILLDEVEKA---HPDVFNILLQ-VLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLI  725 (857)
T ss_pred             --HHCCCEEEEEHHHHHH---CHHHHHHHHH-HHCCCEEECCCCCEEEEEEEEEEECCCHHHHHH
T ss_conf             --8198778863257663---8589999998-703683207999888513348996462336999


No 199
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=93.08  E-value=0.74  Score=25.49  Aligned_cols=135  Identities=24%  Similarity=0.287  Sum_probs=77.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCC------------------HHHHH--HHHHH--------------HH--------
Q ss_conf             49988888772899999999857811------------------14688--89999--------------99--------
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIE------------------KKCRL--HFYEF--------------MK--------  105 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~------------------~K~R~--HFh~F--------------M~--------  105 (404)
                      =+=|-|+-|||||-|+.+..--.+..                  .+|++  =|.++              -.        
T Consensus        33 ~~~llGpSG~GKTTlLr~iaGL~~p~~~~G~I~~~g~~v~~~~~~~R~ig~VFQ~~aLfPhltV~eNia~~L~~~~~~~~  112 (362)
T TIGR03258        33 LLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKA  112 (362)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCEECCCCCHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHH
T ss_conf             99999999745999999997776777881799999999998998889948971798536898099999899986599999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCH---------HHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHC--CCEE
Q ss_conf             99999999713112246655780---------78999999613879998423-204713588899999999854--9689
Q gi|254781047|r  106 DVHSRIIMYRKKIEFGEILESDP---------IPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSH--GCII  173 (404)
Q Consensus       106 ~ih~~l~~~~~~~~~~~~~~~dp---------l~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~--gv~l  173 (404)
                      ++.+++.++-...+........|         --.+|..|+.+-++|++||= ---|..--.-|...+..|.++  |+++
T Consensus       113 e~~~rv~e~l~~vgL~~~~~r~P~~LSGGq~QRVAlARAL~~~P~ilLlDEP~saLD~~~r~~l~~~l~~l~~~l~~~T~  192 (362)
T TIGR03258       113 DIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTI  192 (362)
T ss_pred             HHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             99999999987789967862696678998999999999975599989981887655999999999999999997679889


Q ss_pred             E-EECCC----------------------CHHHHHCCCCCH--HHHHHHHHHHH
Q ss_conf             9-81786----------------------867752387405--66898999998
Q gi|254781047|r  174 V-MTSNF----------------------IPENLYKDEINR--NVLVSFIELLE  202 (404)
Q Consensus       174 V-~TSN~----------------------~P~dLY~~GLqR--~~FlPfI~~lk  202 (404)
                      | .|-+.                      .|.++|.++-++  ..|+-...++.
T Consensus       193 i~VTHD~~EA~~laDrI~Vm~~G~i~Q~gtp~eiy~~P~~~~vA~f~G~~n~~~  246 (362)
T TIGR03258       193 LCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGFAAEFLGAANILP  246 (362)
T ss_pred             EEECCCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCCHHHHHHCCCCCCCC
T ss_conf             998999899998589999998999999818899986899848975169643255


No 200
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.04  E-value=0.68  Score=25.73  Aligned_cols=20  Identities=10%  Similarity=0.109  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHCCCCCEEE
Q ss_conf             99899999998228982899
Q gi|254781047|r  318 IKRFIMLIDVFYEHKIGLII  337 (404)
Q Consensus       318 arRFI~LID~lYd~kv~Li~  337 (404)
                      .|+=|.+-=+++-+.--|++
T Consensus       481 QrQRiaiARAll~~~~iliL  500 (575)
T PRK11160        481 EQRRLGIARALLHDAPLLLL  500 (575)
T ss_pred             HHHHHHHHHHHHCCCCEEEE
T ss_conf             99999999999459999998


No 201
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.04  E-value=0.75  Score=25.45  Aligned_cols=151  Identities=20%  Similarity=0.205  Sum_probs=88.4

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCH---------------H---H------------------------HHHHHHHH
Q ss_conf             6499888887728999999998578111---------------4---6------------------------88899999
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIEK---------------K---C------------------------RLHFYEFM  104 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~---------------K---~------------------------R~HFh~FM  104 (404)
                      .=+=|-|+=|+|||-|+..+..-++...               |   +                        |.-++.+.
T Consensus        29 ~i~~iiGpNG~GKSTLLk~l~~~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~  108 (258)
T COG1120          29 EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLF  108 (258)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCHHHCCHHHHHHHEEEECCCCCCCCCCEEEEHHHHCCCCCCCCC
T ss_conf             79999899888999999998656788887799999724546988875618993567889999587361742677465533


Q ss_pred             H--------HHHHHHHH-----HHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHH-HC
Q ss_conf             9--------99999999-----71311224665578078999999613879998423-2047135888999999998-54
Q gi|254781047|r  105 K--------DVHSRIIM-----YRKKIEFGEILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALF-SH  169 (404)
Q Consensus       105 ~--------~ih~~l~~-----~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf-~~  169 (404)
                      .        .+..-|..     +..+.-..-++..--.-.+|..++++.++|.+||= -=-|++...-+=.++..|- ++
T Consensus       109 ~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iAraLaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~  188 (258)
T COG1120         109 GRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK  188 (258)
T ss_pred             CCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             57887689999999998294777668551168668899999999845899788279720038777999999999999855


Q ss_pred             CCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCE-EEECCCCCHHHHCCCCCCCEEEECCCHHHHHHHHHHHH
Q ss_conf             9689981786867752387405668989999985050-89804731122112367830220353022689999999
Q gi|254781047|r  170 GCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLE-IISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMDKLWA  244 (404)
Q Consensus       170 gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~-V~~l~~~~DYR~~~~~~~~~y~~p~~~~~~~~l~~~f~  244 (404)
                      |.++|++.--                  ++.--++|+ ++-|+.|.=+-.    +.     |.+--+...+.+.|.
T Consensus       189 g~tvv~vlHD------------------ln~A~ryad~~i~l~~G~i~a~----G~-----p~evlT~e~l~~Vyg  237 (258)
T COG1120         189 GLTVVMVLHD------------------LNLAARYADHLILLKDGKIVAQ----GT-----PEEVLTEENLREVYG  237 (258)
T ss_pred             CCEEEEEECC------------------HHHHHHHCCEEEEEECCEEEEE----CC-----CCHHCCHHHHHHHHC
T ss_conf             9789999559------------------8899974788999979937860----59-----412159999999709


No 202
>KOG1803 consensus
Probab=93.04  E-value=0.032  Score=34.14  Aligned_cols=25  Identities=20%  Similarity=0.304  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             4998888877289999999985781
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      =.-|+|++|+|||.-+-....++-.
T Consensus       203 l~~I~GPPGTGKT~TlvEiI~qlvk  227 (649)
T KOG1803         203 LLIIHGPPGTGKTRTLVEIISQLVK  227 (649)
T ss_pred             CEEEECCCCCCCEEEHHHHHHHHHH
T ss_conf             3575579988840439999999997


No 203
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion.  Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins.  Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.98  E-value=0.77  Score=25.40  Aligned_cols=19  Identities=37%  Similarity=0.377  Sum_probs=16.0

Q ss_pred             CCEEEEECCCCCCHHHHHH
Q ss_conf             8649988888772899999
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMN   84 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMd   84 (404)
                      -+=+=|-|+-|+|||-|++
T Consensus        21 G~~~aIiG~sGsGKSTLl~   39 (261)
T cd03271          21 GVLTCVTGVSGSGKSSLIN   39 (261)
T ss_pred             CCEEEEECCCCCCHHHHHH
T ss_conf             9999998799986999999


No 204
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup.  This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules.  The nucleotide-binding domain shows the highest similarity between all members of the family.   ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.87  E-value=0.38  Score=27.36  Aligned_cols=26  Identities=31%  Similarity=0.359  Sum_probs=21.6

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             64998888877289999999985781
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      .=+-|-|+-|+|||-||.+..-..+.
T Consensus        27 ei~~iiGpnGaGKSTl~~~i~Gl~~p   52 (213)
T cd03259          27 EFLALLGPSGCGKTTLLRLIAGLERP   52 (213)
T ss_pred             CEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf             89999999997399999999759998


No 205
>KOG0740 consensus
Probab=92.86  E-value=0.047  Score=33.12  Aligned_cols=27  Identities=30%  Similarity=0.455  Sum_probs=21.7

Q ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             666688649988888772899999999
Q gi|254781047|r   61 RKYCSMQGIYLHGDVGQGKSMLMNLFF   87 (404)
Q Consensus        61 ~~~~~~kGlYL~G~VG~GKT~LMdlFy   87 (404)
                      .-..+++|+-|.|++|+|||||--..-
T Consensus       181 glr~p~rglLLfGPpgtGKtmL~~aiA  207 (428)
T KOG0740         181 GLREPVRGLLLFGPPGTGKTMLAKAIA  207 (428)
T ss_pred             CCCCCCCHHHEECCCCCCHHHHHHHHH
T ss_conf             354453111200589884479999998


No 206
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome.  The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation.  To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes.  X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family.  The disease is characterized by a striking and unpredictable variation in phenotypic expression.  Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=92.84  E-value=0.41  Score=27.13  Aligned_cols=106  Identities=16%  Similarity=0.246  Sum_probs=59.1

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH-----------HHHH--HHHHHHHH-HHCCCCCCCCCCCCHHHH
Q ss_conf             864998888877289999999985781114688899-----------9999--99999999-713112246655780789
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY-----------EFMK--DVHSRIIM-YRKKIEFGEILESDPIPL  131 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh-----------~FM~--~ih~~l~~-~~~~~~~~~~~~~dpl~~  131 (404)
                      -.-+-|-|+-|+|||.|+.+.....+... -++.++           .+|.  .+-+.+.. +....++    ..----.
T Consensus        27 Ge~v~i~G~sGsGKSTLl~~l~Gl~~~~~-G~i~~~~~~~i~~v~Q~~~l~~~tl~e~l~~p~~~~LSG----GqkQRva  101 (166)
T cd03223          27 GDRLLITGPSGTGKSSLFRALAGLWPWGS-GRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSG----GEQQRLA  101 (166)
T ss_pred             CCEEEEECCCCCCHHHHHHHHCCCCCCCC-CEEEECCCCCEEEECCCCCCCCCCHHHHHHCCCCCCCCH----HHHHHHH
T ss_conf             99999995899988999999869876998-679976998799985646658875999963615467899----9999999


Q ss_pred             HHHHHHCCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             999996138799984232-047135888999999998549689981786
Q gi|254781047|r  132 VASSIALESRVLCFDEFM-ITNIADAIILSRLFAALFSHGCIIVMTSNF  179 (404)
Q Consensus       132 va~~l~~~~~lLCfDEF~-V~DiaDAmil~rl~~~lf~~gv~lV~TSN~  179 (404)
                      +|..+..+.++|.+||-- =-|+..   -..+++.|-+.|.++|+.|.+
T Consensus       102 lARal~~~p~iliLDEpTs~LD~~~---~~~l~~~l~~~~~Tvi~VtH~  147 (166)
T cd03223         102 FARLLLHKPKFVFLDEATSALDEES---EDRLYQLLKELGITVISVGHR  147 (166)
T ss_pred             HHHHHHCCCCEEEECCCCCCCCHHH---HHHHHHHHHHCCCEEEEEECC
T ss_conf             9999964999999758533289999---999999999779989999434


No 207
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.80  E-value=0.073  Score=31.89  Aligned_cols=127  Identities=15%  Similarity=0.114  Sum_probs=74.4

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHHH-------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH---
Q ss_conf             8649988888772899999999857811146-------888999999999999997131122466557807899999---
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKC-------RLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASS---  135 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~-------R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~---  135 (404)
                      +...-.+|+-|+|||-+.-.|-.++.+....       --+-..++..-|-.+.+......   . .-|-+..+...   
T Consensus        36 ~HAYLFsGPrGvGKTt~ArifAkaLnC~~~~~~~PCg~C~sC~~i~~g~hpDViEiDaasn---~-gID~IReLie~~~~  111 (523)
T PRK08451         36 AHAYLFSGLRGSGKTSSARIFSRALVCEQGPSSTPCGTCAQCQAALEGRHIDIIEMDAASN---R-GIDDIRNLIEQTKY  111 (523)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCC---C-CHHHHHHHHHHHCC
T ss_conf             7158757899868899999999997599999989888788899986489998551055333---6-89999999997235


Q ss_pred             --HHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf             --9613879998423204713588899999999854968998178686775238740566898999998505089804
Q gi|254781047|r  136 --IALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD  211 (404)
Q Consensus       136 --l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~  211 (404)
                        ....++|.-+||.|--..+-|=-|=+.++.-=.+-+++.+|++  |+.|             ...|..+|..+++.
T Consensus       112 ~P~~gryKV~IIDEah~Lt~~A~NALLKTLEEPP~~vvFILaTTe--p~KL-------------p~TIlSRCQ~f~Fk  174 (523)
T PRK08451        112 KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD--PLKL-------------PATILSRTQHFRFK  174 (523)
T ss_pred             CCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCC--HHHC-------------HHHHHHHHHCCCCC
T ss_conf             886797279998260304899999999970389878379997599--4768-------------48887420311033


No 208
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1).  NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters.  Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear.  The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed.  MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.70  E-value=0.35  Score=27.59  Aligned_cols=25  Identities=32%  Similarity=0.494  Sum_probs=21.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             4998888877289999999985781
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      =+=|-|+.|+|||-|+.+....++.
T Consensus        36 ~v~ivG~sGsGKSTLl~ll~g~~~p   60 (207)
T cd03369          36 KIGIVGRTGAGKSTLILALFRFLEA   60 (207)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf             9999999998799999999987288


No 209
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=92.64  E-value=0.76  Score=25.42  Aligned_cols=115  Identities=19%  Similarity=0.223  Sum_probs=65.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCH---------------HHHHHHHHH-----H---------------HHHHHHHH
Q ss_conf             499888887728999999998578111---------------468889999-----9---------------99999999
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEK---------------KCRLHFYEF-----M---------------KDVHSRII  112 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~---------------K~R~HFh~F-----M---------------~~ih~~l~  112 (404)
                      =+=|-|+-|+|||-||.+.....+...               +.++-|.+.     |               ..+.+.+.
T Consensus        40 iv~LiG~nGaGKSTLlr~i~Gl~~p~~G~I~~~~~~i~~~~~~i~~vfQ~~~l~~~~tV~eni~~gl~~~~~~~~~e~l~  119 (257)
T PRK11247         40 FVAVVGRSGCGKSTLLRLLAGLETPTAGDLLAGTAPLAEAQEDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALA  119 (257)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHHHCEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             99999899888999999996589888870898987554431100799325644767789999863214106999999999


Q ss_pred             HHH-----CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHH-HCCCEEEEECCCCHH
Q ss_conf             971-----311224665578078999999613879998423-2047135888999999998-549689981786867
Q gi|254781047|r  113 MYR-----KKIEFGEILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALF-SHGCIIVMTSNFIPE  182 (404)
Q Consensus       113 ~~~-----~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf-~~gv~lV~TSN~~P~  182 (404)
                      ...     .+....-++..----.+|..++.+-+||.+||= -=-|+...--+-.++..|. +.|+++|.+|-...+
T Consensus       120 ~vgL~~~~~~~p~~LSGGqkQRvaiAraL~~~P~lLlLDEPtsgLD~~~~~~i~~ll~~L~~e~g~TIi~vTHdl~e  196 (257)
T PRK11247        120 AVGLADRANEWPAALSGGQKQRVALARALIHRPRLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSE  196 (257)
T ss_pred             HCCCCHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHH
T ss_conf             85991355369444899999999999998459999998098765799999999999999999609899998879999


No 210
>KOG1514 consensus
Probab=92.63  E-value=0.072  Score=31.90  Aligned_cols=129  Identities=13%  Similarity=0.165  Sum_probs=69.4

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHH-------HHHHHHH----HHHHHHHHHH-HHCCCCCCCCCCCCHHHH
Q ss_conf             688649988888772899999999857811146-------8889999----9999999999-713112246655780789
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKC-------RLHFYEF----MKDVHSRIIM-YRKKIEFGEILESDPIPL  131 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~-------R~HFh~F----M~~ih~~l~~-~~~~~~~~~~~~~dpl~~  131 (404)
                      ..-..+||.|-+|+|||....-.-+++....+.       -+|-+..    |.++...+-. +.+..    ....-.+..
T Consensus       420 ~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~----~~~~~al~~  495 (767)
T KOG1514         420 GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGER----VTWDAALEA  495 (767)
T ss_pred             CCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCHHHHHHHHHHHCCCCC----CCHHHHHHH
T ss_conf             7740799846999883212999999999877505789860798714461588999999999755574----307788999


Q ss_pred             HHHHHH-----CCCCEEEEEEEEECCCHHHHHHHHHHHHHHH--CCCEEEEECCC--CHHHHHCC------CCCHHHHHH
Q ss_conf             999996-----1387999842320471358889999999985--49689981786--86775238------740566898
Q gi|254781047|r  132 VASSIA-----LESRVLCFDEFMITNIADAIILSRLFAALFS--HGCIIVMTSNF--IPENLYKD------EINRNVLVS  196 (404)
Q Consensus       132 va~~l~-----~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~--~gv~lV~TSN~--~P~dLY~~------GLqR~~FlP  196 (404)
                      .+..+.     +...|+.+||..+-=--.--||-.+|++--.  -.+++|+-+|+  -|+.+..|      |+.|=-|-|
T Consensus       496 L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~p  575 (767)
T KOG1514         496 LNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQP  575 (767)
T ss_pred             HHHHHCCCCCCCCCEEEEECCHHHHHCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHCCCHHHHCCCEEEECCC
T ss_conf             98654167878787799963578773520988977740776789866999951656477988543112330650551377


No 211
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=92.53  E-value=0.15  Score=29.86  Aligned_cols=45  Identities=33%  Similarity=0.440  Sum_probs=26.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf             4887789899999999999999986135433322566431024666666886499888887728999999
Q gi|254781047|r   16 DKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNL   85 (404)
Q Consensus        16 ~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdl   85 (404)
                      +==+++-.+|.++|.+..   ..|...                      .|--=-|-|+||+|||+.--+
T Consensus       303 ~LPF~LT~aQ~r~v~EI~---~DL~~~----------------------~pMnRLlQGDVGSGKT~VA~l  347 (721)
T TIGR00643       303 SLPFELTRAQKRVVKEIL---QDLKSD----------------------VPMNRLLQGDVGSGKTLVAAL  347 (721)
T ss_pred             CCCCCCCHHHHHHHHHHH---HHHCCC----------------------CCCCCCCCCCCCCHHHHHHHH
T ss_conf             288877677899999999---861478----------------------753222110106638999999


No 212
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.42  E-value=0.85  Score=25.11  Aligned_cols=127  Identities=12%  Similarity=0.102  Sum_probs=74.6

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHH-------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH---
Q ss_conf             86499888887728999999998578111468-------88999999999999997131122466557807899999---
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCR-------LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASS---  135 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R-------~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~---  135 (404)
                      |.+.-.+|+.|+|||-+--.|-.++.+.....       -.-..+...-|-.+.+.....   .. .-|-+..+.+.   
T Consensus        38 aHAYLFsGPrGvGKTTlArifAkaLnC~~~~~~dpCg~C~sC~~I~~g~h~DviEIdaas---n~-gIDeIReLie~~~~  113 (613)
T PRK05896         38 THAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAAS---NN-GVDEIRNIIDNINY  113 (613)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCC---CC-CHHHHHHHHHHHCC
T ss_conf             622775589984889999999999669999999988888789998569999868840655---57-88999999997085


Q ss_pred             --HHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf             --9613879998423204713588899999999854968998178686775238740566898999998505089804
Q gi|254781047|r  136 --IALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD  211 (404)
Q Consensus       136 --l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~  211 (404)
                        ....++|.-+||.|--..+-|=-|-++++.-=.+.+.+.+|++  |+.|             ...|..||.-+++.
T Consensus       114 ~P~~gkyKV~IIDEah~Ln~~AaNALLKtLEEPP~~viFIL~Tte--p~KL-------------LpTIlSRCQrf~Fk  176 (613)
T PRK05896        114 LPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTE--FQKI-------------PLTIISRCQRYNFK  176 (613)
T ss_pred             CCCCCCCEEEEECCHHHCCHHHHHHHHHHCCCCCCCCEEEEEECC--HHHC-------------CHHHHHCCCCEECC
T ss_conf             875799459998162217999999999853489878379998288--1549-------------37664035500178


No 213
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=92.27  E-value=0.5  Score=26.59  Aligned_cols=42  Identities=26%  Similarity=0.235  Sum_probs=25.7

Q ss_pred             CCCEEEEEEEE----ECCCHHHH-HHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             38799984232----04713588-89999999985496899817868
Q gi|254781047|r  139 ESRVLCFDEFM----ITNIADAI-ILSRLFAALFSHGCIIVMTSNFI  180 (404)
Q Consensus       139 ~~~lLCfDEF~----V~DiaDAm-il~rl~~~lf~~gv~lV~TSN~~  180 (404)
                      +.+.+.+|-+.    ..|.+.+. .+..|+..+-+.|+++++|+..+
T Consensus       119 ~~~~vVIDsit~l~~~~~~~~~r~~l~~l~~~lk~~g~t~l~t~e~~  165 (231)
T pfam06745       119 GAKRVVIDSITTLFYLLKPAMAREILRRLKRVLKKLGVTAIFTSEKP  165 (231)
T ss_pred             CCCEEEEECCHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf             99889997641640058899999999999999997699199998212


No 214
>KOG2227 consensus
Probab=92.24  E-value=0.51  Score=26.54  Aligned_cols=124  Identities=15%  Similarity=0.185  Sum_probs=62.0

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHH-HHHH---------HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf             688649988888772899999999857811146-8889---------999999999999971311224665578078999
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKC-RLHF---------YEFMKDVHSRIIMYRKKIEFGEILESDPIPLVA  133 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~-R~HF---------h~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va  133 (404)
                      ..+..+|+-|-+|.|||-+|--.+++++...|. -.-+         -.-...|++.+-+..+-    ++.+.|-+..+-
T Consensus       173 ~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s----~~~~~~~~~~~~  248 (529)
T KOG2227         173 NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVS----PGTGMQHLEKFE  248 (529)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHH
T ss_conf             6676457517998654889999987403431665169985123542588999998889887428----950478999999


Q ss_pred             HHHHCCCC--EEEEEEEEECCCHHHHHHHHHHHHH--HHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHH
Q ss_conf             99961387--9998423204713588899999999--854968998178686775238740566898999
Q gi|254781047|r  134 SSIALESR--VLCFDEFMITNIADAIILSRLFAAL--FSHGCIIVMTSNFIPENLYKDEINRNVLVSFIE  199 (404)
Q Consensus       134 ~~l~~~~~--lLCfDEF~V~DiaDAmil~rl~~~l--f~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~  199 (404)
                      +-+.+...  ||.+||+-.-.--+--.|--||++-  -...+++|.--|.-  ||      -|+|||-+.
T Consensus       249 ~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANsl--Dl------TdR~LprL~  310 (529)
T KOG2227         249 KHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSL--DL------TDRFLPRLN  310 (529)
T ss_pred             HHHHCCCCEEEEEECHHHHHHHCCCCEEEEEHHCCCCCCCEEEEEEEHHHH--HH------HHHHHHHHH
T ss_conf             987525633898721256776046531432100136776605666400135--57------777766654


No 215
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D.  PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.21  E-value=0.67  Score=25.76  Aligned_cols=25  Identities=28%  Similarity=0.317  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             4998888877289999999985781
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      =+=|-|+-|+|||-||.+..-..+.
T Consensus        28 ~~~iiGpSGsGKSTllr~i~Gl~~p   52 (232)
T cd03300          28 FFTLLGPSGCGKTTLLRLIAGFETP   52 (232)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf             9999999998399999999779999


No 216
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=92.18  E-value=0.97  Score=24.74  Aligned_cols=135  Identities=19%  Similarity=0.297  Sum_probs=76.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCC----------------HHHHH--HHHHHHH----------------------HH
Q ss_conf             49988888772899999999857811----------------14688--8999999----------------------99
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIE----------------KKCRL--HFYEFMK----------------------DV  107 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~----------------~K~R~--HFh~FM~----------------------~i  107 (404)
                      =+-|-|+=|+|||-||.+..--.+..                .++.+  =|.++.+                      ++
T Consensus        31 ~~~llGpsG~GKSTllr~i~Gl~~p~~G~I~i~g~~v~~~~~~~r~ig~vfQ~~~L~p~ltV~eNi~~~l~~~~~~~~e~  110 (369)
T PRK11000         31 FVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEI  110 (369)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHH
T ss_conf             99999999736999999997799999549999999998799778786999407854789899999977887638988999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCH---------HHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHC-CCEEEEE
Q ss_conf             999999713112246655780---------78999999613879998423-204713588899999999854-9689981
Q gi|254781047|r  108 HSRIIMYRKKIEFGEILESDP---------IPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSH-GCIIVMT  176 (404)
Q Consensus       108 h~~l~~~~~~~~~~~~~~~dp---------l~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~-gv~lV~T  176 (404)
                      .++..++-............|         --.+|..|+.+-++|++||= ---|..-..-+..++..|.+. |+++|..
T Consensus       111 ~~rv~~~l~~~~l~~~~~r~p~~LSGGq~QRvaiARAL~~~P~illlDEP~s~LD~~~r~~~~~~l~~l~~~~g~T~i~v  190 (369)
T PRK11000        111 NQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV  190 (369)
T ss_pred             HHHHHHHHHHHCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHEEHHHHHHHHHHHHHCCEEEEE
T ss_conf             99999999863745355588746694277999999886259985884366678886665247899999999869859999


Q ss_pred             CCC-----------------------CHHHHHCCCCCH--HHHH--HHHHHHH
Q ss_conf             786-----------------------867752387405--6689--8999998
Q gi|254781047|r  177 SNF-----------------------IPENLYKDEINR--NVLV--SFIELLE  202 (404)
Q Consensus       177 SN~-----------------------~P~dLY~~GLqR--~~Fl--PfI~~lk  202 (404)
                      +--                       .|+++|.++-|+  ..|+  |-|.++.
T Consensus       191 THD~~eA~~laDrI~Vm~~G~i~q~GtP~eiy~~P~n~fVA~FiG~P~mN~l~  243 (369)
T PRK11000        191 THDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRFVAGFIGSPKMNFLP  243 (369)
T ss_pred             ECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCCHHHHHHCCCCCCCEEE
T ss_conf             08999999859999999899899994899998689985898641998400178


No 217
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids.  The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis.  YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein.  Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli.  The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=92.15  E-value=0.98  Score=24.72  Aligned_cols=51  Identities=16%  Similarity=0.157  Sum_probs=34.0

Q ss_pred             HHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             78999999613879998423-2047135888999999998549689981786
Q gi|254781047|r  129 IPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNF  179 (404)
Q Consensus       129 l~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~  179 (404)
                      .-.+|..|+.+-+||.+||= -=-|+..+.-+..++..|-++|+.++.||-.
T Consensus       141 rv~iAraL~~~P~illlDEPt~GLDp~~~~~i~~~i~~l~~~g~tili~tH~  192 (232)
T cd03218         141 RVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHN  192 (232)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             9999999966999999889856889999999999999999589999999283


No 218
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.14  E-value=0.98  Score=24.71  Aligned_cols=160  Identities=12%  Similarity=0.127  Sum_probs=82.3

Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEE-CCCCCCH
Q ss_conf             970058999999997488778989999999999999998613543332256643102466666688649988-8887728
Q gi|254781047|r    1 MSLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLH-GDVGQGK   79 (404)
Q Consensus         1 m~~~~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~-G~VG~GK   79 (404)
                      |+++.+...|+-    +.+..=-+|..++..|.....+   .               +      -+. -||+ |+-|+||
T Consensus         1 M~Y~aLyrkyRP----~~f~dvvgQ~~v~~~L~n~i~~---~---------------~------i~h-ayLf~GprG~GK   51 (541)
T PRK05563          1 MGYTALYREWRP----RTFEDVVGQEHITTTLKNQIIN---N---------------R------IAH-AYLFCGTRGTGK   51 (541)
T ss_pred             CCCHHHHHHHCC----CCHHHHCCCHHHHHHHHHHHHC---C---------------C------CCE-EEEEECCCCCCH
T ss_conf             963878876489----9776624849999999999984---9---------------9------320-453038799589


Q ss_pred             HHHHHHHHHHCCCCHHHH-------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH---HHH-----HHCCCCEEE
Q ss_conf             999999998578111468-------88999999999999997131122466557807899---999-----961387999
Q gi|254781047|r   80 SMLMNLFFALVPIEKKCR-------LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLV---ASS-----IALESRVLC  144 (404)
Q Consensus        80 T~LMdlFy~~l~~~~K~R-------~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~v---a~~-----l~~~~~lLC  144 (404)
                      |-.--.|-.++.+..-.-       -.-.......+-.+.+...  .     ....++.|   -..     ....++|.-
T Consensus        52 Ts~Ari~akalnc~~~~~~~pC~~C~~C~~i~~g~~~Dv~Eida--a-----s~~gvd~iR~~~~~~~~~p~~~~~Kv~I  124 (541)
T PRK05563         52 TSTAKIFAKAVNCLNPQDGEPCNECEICKKINEGLLMDVIEIDA--A-----SNNGVDDIREIIENVKYPPQEGKYKVYI  124 (541)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECC--C-----CCCCHHHHHHHHHHCEECCCCCCEEEEE
T ss_conf             99999999995799988898575148899985689887366244--4-----4478899999997610487678705999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf             8423204713588899999999854968998178686775238740566898999998505089804
Q gi|254781047|r  145 FDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD  211 (404)
Q Consensus       145 fDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~  211 (404)
                      +||.|---.+-.=-|-+.++.-=.+-+++.+|-+.+  .+             +..|..+|..+.+.
T Consensus       125 iDEvhmls~~a~nallKtlEePp~~~~Filatte~~--ki-------------~~tI~SRcq~f~f~  176 (541)
T PRK05563        125 MDEVHMLSQGAVNAFLKTLEEPPSNVIFILATTDPQ--KL-------------PITILSRCQRFDFK  176 (541)
T ss_pred             EECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CC-------------CHHHHHHEEEEEEE
T ss_conf             977233899999999999854877756999769844--27-------------45567421357754


No 219
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.06  E-value=0.62  Score=25.97  Aligned_cols=129  Identities=11%  Similarity=0.166  Sum_probs=73.9

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHHH------HHH-HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH--
Q ss_conf             8649988888772899999999857811146------888-9999999999999971311224665578078999999--
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKC------RLH-FYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI--  136 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~------R~H-Fh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l--  136 (404)
                      +...-+.|+.|+||+-+--.|-..+-+....      +-+ =..|....|-.++...-.   +.+...|-+..+.+++  
T Consensus        28 ~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~---~~~i~idqiR~L~~~~~~  104 (329)
T PRK08058         28 AHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIESGNHPDVHLVAPD---GQSIKKDQIRYLKEEFSK  104 (329)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCC---CCCCCHHHHHHHHHHHCC
T ss_conf             61565578999889999999999973999999998878889999876999976774566---140779999999999643


Q ss_pred             ---HCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf             ---6138799984232047135888999999998549689981786867752387405668989999985050898047
Q gi|254781047|r  137 ---ALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS  212 (404)
Q Consensus       137 ---~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~  212 (404)
                         ...++|.-+||-+--..+-|=-|=+.+|.==.+-+++.+|+|  |+.|             ++.|..+|.++++..
T Consensus       105 ~p~~g~~KV~II~~Ae~m~~~AaNALLKtLEEPp~~t~fIL~t~~--~~~l-------------LpTI~SRCq~i~f~~  168 (329)
T PRK08058        105 SGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGDTTAILLTEN--KHQI-------------LPTILSRCQVVEFRP  168 (329)
T ss_pred             CCCCCCCEEEEEECHHHHCHHHHHHHHHHHHCCCCCCEEEEEECC--HHHH-------------HHHHHHCCEEEECCC
T ss_conf             875788679997347762999999999986468978679987299--6664-------------368863142565889


No 220
>KOG0743 consensus
Probab=91.95  E-value=0.27  Score=28.26  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=19.9

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf             688649988888772899999999857
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALV   90 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l   90 (404)
                      +-.||-.||||+|+|||=+..+.-..+
T Consensus       233 awKRGYLLYGPPGTGKSS~IaAmAn~L  259 (457)
T KOG0743         233 AWKRGYLLYGPPGTGKSSFIAAMANYL  259 (457)
T ss_pred             CCCCCCEEECCCCCCHHHHHHHHHHHC
T ss_conf             500041204799998889999997205


No 221
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=91.95  E-value=0.46  Score=26.79  Aligned_cols=135  Identities=13%  Similarity=0.078  Sum_probs=72.4

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCHHH---HHHH
Q ss_conf             886499888887728999999998578111-----4688899999999999999713--11224665578078---9999
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEK-----KCRLHFYEFMKDVHSRIIMYRK--KIEFGEILESDPIP---LVAS  134 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~-----K~R~HFh~FM~~ih~~l~~~~~--~~~~~~~~~~dpl~---~va~  134 (404)
                      -|.++-++|+.|.||+-+.-.|-+.+-...     ..+-. +-+....|-.++...-  ..........-.++   .+.+
T Consensus        25 l~HA~Lf~Gp~G~GK~~~A~~~A~~llc~~~~~~~~~~~~-~~i~~g~HPD~~~i~~~~~~~~~k~k~~I~IdqiR~l~~  103 (319)
T PRK08769         25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPALAQRTR-QLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ  103 (319)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHH-HHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             4206875899987899999999999837997976543388-999668998968775344445431123486999999999


Q ss_pred             H-----HHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEE
Q ss_conf             9-----96138799984232047135888999999998549689981786867752387405668989999985050898
Q gi|254781047|r  135 S-----IALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIIS  209 (404)
Q Consensus       135 ~-----l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~  209 (404)
                      .     .....+|+-+||.+--.+.-|=-|=+.++.- ..++++|.+|+ .|+.|             +..|..+|..++
T Consensus       104 ~~~~~p~~g~~KV~IId~Ad~mn~~AaNalLK~LEEP-p~~~~~iL~~~-~~~~l-------------l~TI~SRCq~~~  168 (319)
T PRK08769        104 KLALTPQYGIAQVVIVDPADAINRSACNALLKTLEEP-SPGRYLWLISA-QPARL-------------PATIRSRCQRLE  168 (319)
T ss_pred             HHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCC-CCCEEEEEEEC-CHHHC-------------CHHHHHCCEEEC
T ss_conf             9613720279569998066752899999999982279-98848999869-93658-------------247764850111


Q ss_pred             CCCCCH
Q ss_conf             047311
Q gi|254781047|r  210 LDSGQD  215 (404)
Q Consensus       210 l~~~~D  215 (404)
                      +....+
T Consensus       169 ~~~p~~  174 (319)
T PRK08769        169 FKLPPA  174 (319)
T ss_pred             CCCCCH
T ss_conf             899699


No 222
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.93  E-value=0.36  Score=27.51  Aligned_cols=24  Identities=25%  Similarity=0.332  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             499888887728999999998578
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      =+=|-|+-|.|||-|+.++...++
T Consensus        34 ~~aiiG~NGaGKSTLl~~i~Gll~   57 (285)
T PRK13636         34 VTAILGGNGAGKSTLFQNLNGILK   57 (285)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999999999809999999965988


No 223
>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Probab=91.91  E-value=0.13  Score=30.30  Aligned_cols=26  Identities=27%  Similarity=0.535  Sum_probs=22.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             64998888877289999999985781
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      -.+.|+|++|+|||||...+-.-+|.
T Consensus        23 H~lLl~GpPG~GKTmlA~rl~~iLP~   48 (207)
T pfam01078        23 HNLLMIGPPGSGKTMLAKRLPGILPP   48 (207)
T ss_pred             CCEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf             75897889980299999763014899


No 224
>TIGR00150 TIGR00150 conserved hypothetical protein TIGR00150; InterPro: IPR003442   This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements . .
Probab=91.84  E-value=0.15  Score=29.83  Aligned_cols=27  Identities=30%  Similarity=0.482  Sum_probs=24.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCH
Q ss_conf             499888887728999999998578111
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEK   94 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~   94 (404)
                      =+||.|++|.|||-+..-|-+.+-+..
T Consensus        30 v~~L~GDlGaGKTtl~~G~~~~LG~~~   56 (147)
T TIGR00150        30 VVLLKGDLGAGKTTLVKGLLQGLGITG   56 (147)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCEE
T ss_conf             899732346665899999998379226


No 225
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance.  Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis.  The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC.  Bacitracin has potent antibiotic activity against gram-positive bacteria.  The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin.  The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC.  B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=91.83  E-value=0.64  Score=25.89  Aligned_cols=52  Identities=19%  Similarity=0.223  Sum_probs=42.1

Q ss_pred             HHHHHHHCCCCEEEEEE-EEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf             99999961387999842-32047135888999999998549689981786867
Q gi|254781047|r  131 LVASSIALESRVLCFDE-FMITNIADAIILSRLFAALFSHGCIIVMTSNFIPE  182 (404)
Q Consensus       131 ~va~~l~~~~~lLCfDE-F~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~  182 (404)
                      .+|..++.+-++|++|| +-=-|+...-.+.+++..+-+.|..++.||-...+
T Consensus       136 ~la~al~~~p~lliLDEPt~GLD~~~~~~i~~~l~~l~~~g~til~~sH~l~e  188 (208)
T cd03268         136 GIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSE  188 (208)
T ss_pred             HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
T ss_conf             99999856999999938876899999999999999999589999998986899


No 226
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=91.79  E-value=0.23  Score=28.66  Aligned_cols=28  Identities=36%  Similarity=0.695  Sum_probs=24.9

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             8864998888877289999999985781
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      ..-||-|-|+.|+|||||.-.+-+-+|.
T Consensus        28 ~~ggvLi~G~~GtgKStlaR~l~~iLP~   55 (334)
T PRK13407         28 GIGGVLVFGDRGTGKSTAVRALAALLPL   55 (334)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf             9860899789986599999999972899


No 227
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=91.69  E-value=0.78  Score=25.34  Aligned_cols=148  Identities=18%  Similarity=0.279  Sum_probs=79.1

Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEE-CCCCCCH
Q ss_conf             970058999999997488778989999999999999998613543332256643102466666688649988-8887728
Q gi|254781047|r    1 MSLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLH-GDVGQGK   79 (404)
Q Consensus         1 m~~~~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~-G~VG~GK   79 (404)
                      ||++.+...|+-    +.+..=-.|..++..|..   .|...         +             .---||+ |.-|+||
T Consensus         1 msy~vlark~RP----~~f~e~vGQ~~v~~~l~n---al~~~---------r-------------l~haylf~G~rGvGK   51 (816)
T PRK07003          1 MTYQVLARKWRP----KDFASLVGQEHVVRALTH---ALDGG---------R-------------LHHAYLFTGTRGVGK   51 (816)
T ss_pred             CCCHHHHHHHCC----CCHHHHCCCHHHHHHHHH---HHHCC---------C-------------CCCEEEEECCCCCCH
T ss_conf             942777755089----857662384999999999---99709---------8-------------631475117898888


Q ss_pred             HHHHHHHHHHCCCCH------------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH---HHH-----HHCC
Q ss_conf             999999998578111------------46888999999999999997131122466557807899---999-----9613
Q gi|254781047|r   80 SMLMNLFFALVPIEK------------KCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLV---ASS-----IALE  139 (404)
Q Consensus        80 T~LMdlFy~~l~~~~------------K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~v---a~~-----l~~~  139 (404)
                      |-+--+|-.++.+..            .+-|.=..|+     .+.+....       ..+.++.+   -..     ....
T Consensus        52 Tt~aRi~Ak~lnC~~~~~~~pcg~C~~C~~i~~g~~~-----d~iEiDaA-------S~~~vd~~r~l~~~~~y~p~~~r  119 (816)
T PRK07003         52 TTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFV-----DYVEMDAA-------SNRGVDEMAALLERAVYAPVDAR  119 (816)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCC-----CEEEEECC-------CCCCHHHHHHHHHHCCCCCCCCC
T ss_conf             8999999998678999998978775557877558877-----54786355-------43576899999986224786674


Q ss_pred             CCEEEEEEEEECCCHHHHHHHHHHHHHH-------HCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf             8799984232047135888999999998-------54968998178686775238740566898999998505089804
Q gi|254781047|r  140 SRVLCFDEFMITNIADAIILSRLFAALF-------SHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD  211 (404)
Q Consensus       140 ~~lLCfDEF~V~DiaDAmil~rl~~~lf-------~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~  211 (404)
                      ++|..|||.|       |+=+.=|..|.       .+-++|.+|..  |..+             -..|-.+|.-+++.
T Consensus       120 ~KvyiiDEvH-------mls~~afnalLKtlEepP~hv~FilaTTd--~~k~-------------p~tilSRc~~f~l~  176 (816)
T PRK07003        120 FKVYMIDEVH-------MLTNHAFNAMLKTLEEPPPHVKFILATTD--PQKI-------------PVTVLSRCLQFNLK  176 (816)
T ss_pred             EEEEEEECHH-------HCCHHHHHHHHHHHCCCCCCEEEEEECCC--HHHC-------------CHHHHHHHHHCCCC
T ss_conf             4799984154-------33999999999840379866489995588--0115-------------28898777652236


No 228
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=91.68  E-value=1.1  Score=24.39  Aligned_cols=114  Identities=22%  Similarity=0.266  Sum_probs=66.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCC-------HHHH-------HHHH--------HHHH--------HHHHHHHHHHCC
Q ss_conf             49988888772899999999857811-------1468-------8899--------9999--------999999997131
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIE-------KKCR-------LHFY--------EFMK--------DVHSRIIMYRKK  117 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~-------~K~R-------~HFh--------~FM~--------~ih~~l~~~~~~  117 (404)
                      =+=|-|+=|.|||-|+.+....++..       .+.|       +++.        .|+.        ++...+....-.
T Consensus        32 i~~LiGpNGaGKSTLlk~I~Gl~~p~~G~I~~~~~~~igyvpq~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~  111 (251)
T PRK09544         32 ILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAG  111 (251)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCEEECCCHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
T ss_conf             99999899988999999996688898608999994026204377621876218999986327665389999999873852


Q ss_pred             -----CCCCCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHC-CCEEEEECCCCH
Q ss_conf             -----1224665578078999999613879998423-204713588899999999854-968998178686
Q gi|254781047|r  118 -----IEFGEILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSH-GCIIVMTSNFIP  181 (404)
Q Consensus       118 -----~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~-gv~lV~TSN~~P  181 (404)
                           .-..-++..----.+|..++.+-++|.+||= -=-|+....-+-.++..|-+. |+.+|.+|-...
T Consensus       112 ~~~~~~~~~LSGGq~QRv~iAraL~~~P~lLiLDEPTsgLD~~~~~~i~~li~~L~~e~g~til~vtHDl~  182 (251)
T PRK09544        112 HLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH  182 (251)
T ss_pred             HHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf             24326544589999999999999974999899809864689999999999999999832989999906899


No 229
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=91.67  E-value=1.1  Score=24.38  Aligned_cols=129  Identities=17%  Similarity=0.160  Sum_probs=71.5

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHHHHH
Q ss_conf             886499888887728999999998578111468889999------9999999999713-112246655780789999996
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEF------MKDVHSRIIMYRK-KIEFGEILESDPIPLVASSIA  137 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~F------M~~ih~~l~~~~~-~~~~~~~~~~dpl~~va~~l~  137 (404)
                      +.--|.|+|.-|+||-.+-....+..+-.+|-   |-..      ..-+-++|+-..+ .-.+......--+     + .
T Consensus       163 s~a~VLI~GESGtGKElvAr~IH~~S~R~~~P---FVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~f-----E-~  233 (464)
T COG2204         163 SDASVLITGESGTGKELVARAIHQASPRAKGP---FIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRF-----E-Q  233 (464)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCC---CEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCE-----E-E
T ss_conf             79978997789875899999998607445899---2563346489888777761456567677643457615-----7-7


Q ss_pred             CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHC-------------CCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf             13879998423204713588899999999854-------------96899817868677523874056689899999850
Q gi|254781047|r  138 LESRVLCFDEFMITNIADAIILSRLFAALFSH-------------GCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKK  204 (404)
Q Consensus       138 ~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~-------------gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~  204 (404)
                      .+.=.|++||..=-..   -+=.+|+..|-++             .|.+|++||+...++-+.|..|+.       |--+
T Consensus       234 A~GGTLfLDEI~~mpl---~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReD-------LyyR  303 (464)
T COG2204         234 ANGGTLFLDEIGEMPL---ELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFRED-------LYYR  303 (464)
T ss_pred             CCCCEEEEECCCCCCH---HHHHHHHHHHHCCEEEECCCCCEECEEEEEEEECCCCHHHHHHCCCCHHH-------HHHH
T ss_conf             3796587323110999---99999999987070673588860000169996057789999881973788-------8865


Q ss_pred             CEEEECCC
Q ss_conf             50898047
Q gi|254781047|r  205 LEIISLDS  212 (404)
Q Consensus       205 ~~V~~l~~  212 (404)
                      +.|++|.-
T Consensus       304 LnV~~i~i  311 (464)
T COG2204         304 LNVVPLRL  311 (464)
T ss_pred             HCCCEECC
T ss_conf             23311048


No 230
>cd01882 BMS1 Bms1.  Bms1 is an essential, evolutionarily conserved, nucleolar protein.  Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits.  Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit.  The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly.  It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=91.60  E-value=0.22  Score=28.80  Aligned_cols=97  Identities=23%  Similarity=0.188  Sum_probs=55.0

Q ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHCC--------------CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             6666886499888887728999999998578--------------11146888999999999999997131122466557
Q gi|254781047|r   61 RKYCSMQGIYLHGDVGQGKSMLMNLFFALVP--------------IEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILES  126 (404)
Q Consensus        61 ~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~--------------~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~  126 (404)
                      ...+||-=+-+-|+.|+|||.||+.+.....              ..+|+|+-|-+-=.++++-+-              
T Consensus        34 ~~epPP~vVavvGPpgvGKtTLiksLvk~ytk~~l~~i~GPiTvvs~K~rRiTfiEc~nDi~smiD--------------   99 (225)
T cd01882          34 PEEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITVVTGKKRRLTFIECPNDINAMID--------------   99 (225)
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEECCCHHHHHHH--------------
T ss_conf             789999699998989977889999999998544375578887999468426899974860999987--------------


Q ss_pred             CHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf             80789999996138799984232047135888999999998549689981786867
Q gi|254781047|r  127 DPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPE  182 (404)
Q Consensus       127 dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~  182 (404)
                        +.+|     .+.-||.+|-    ..+=-|---.++..|..+|..-|+.==++-|
T Consensus       100 --~AKv-----ADlVLl~iD~----s~GfEmEtfEfLnilq~hG~PkV~GVltHlD  144 (225)
T cd01882         100 --IAKV-----ADLVLLLIDA----SFGFEMETFEFLNILQVHGFPRVMGVLTHLD  144 (225)
T ss_pred             --HHHH-----HHEEEEEECC----CCCEEEEHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             --8876-----4336888616----6553520899999999759994378854431


No 231
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=91.58  E-value=0.59  Score=26.12  Aligned_cols=46  Identities=20%  Similarity=0.210  Sum_probs=35.2

Q ss_pred             HHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             7899999961387999842320471358889999999985496899
Q gi|254781047|r  129 IPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIV  174 (404)
Q Consensus       129 l~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV  174 (404)
                      -+.++..+...++++.+||||=||..=--|+.+++..--..++++|
T Consensus       367 ~~~la~~l~~ry~~iLIDEFQDTd~~Q~~I~~~l~~~~~~~~LfmV  412 (1181)
T PRK10876        367 GEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWGHQPETALLLI  412 (1181)
T ss_pred             HHHHHHHHHHHCCEEEEHHHCCCCHHHHHHHHHHHCCCCCCCEEEE
T ss_conf             6999999985185644023204889999999999647998816998


No 232
>PRK08903 hypothetical protein; Validated
Probab=91.36  E-value=0.78  Score=25.35  Aligned_cols=62  Identities=15%  Similarity=0.194  Sum_probs=44.8

Q ss_pred             HHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             998537889981898787246389998999999982289-82899807897880134676531348998988745
Q gi|254781047|r  294 EIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHK-IGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLYE  367 (404)
Q Consensus       294 ~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~k-v~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~E  367 (404)
                      .-....+.++|+||-.++...   ..-|.++++.+++++ ..|++++..||..+.        +. .+=.|||.=
T Consensus        86 ~~~~~~d~l~iDDi~~i~~~~---q~~lF~l~N~~~~~~~~~ll~s~~~~p~~l~--------~~-~DL~SRl~~  148 (227)
T PRK08903         86 DFDPRAELYAVDDVERLDDAQ---QIALFNLFNRVRAHGKTALLVAGPAAPLALD--------VR-EDLRTRLGW  148 (227)
T ss_pred             HHHHCCCEEEEECCCCCCCHH---HHHHHHHHHHHHHCCCCEEEECCCCCHHHCC--------CC-HHHHHHHHC
T ss_conf             420018989996411489569---9999999999997299489971899712012--------00-899999938


No 233
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=91.21  E-value=1.2  Score=24.08  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=17.5

Q ss_pred             EEEECCCCCCHHHHHHHHHHHC
Q ss_conf             9988888772899999999857
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALV   90 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l   90 (404)
                      +-|+|+.|.|||.|+-.+-..+
T Consensus         2 ~li~g~~g~GKttl~~~~~~~~   23 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNI   23 (165)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
T ss_conf             8999899998999999999998


No 234
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482   This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=91.13  E-value=0.17  Score=29.59  Aligned_cols=26  Identities=31%  Similarity=0.560  Sum_probs=21.5

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             86499888887728999999998578
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      ---|-+-||+|+|||||..=.---||
T Consensus       213 GHNlll~GPPGsGKTmla~r~~giLP  238 (505)
T TIGR00368       213 GHNLLLLGPPGSGKTMLASRLQGILP  238 (505)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             56437678249626899987510578


No 235
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB.  This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.97  E-value=0.84  Score=25.14  Aligned_cols=27  Identities=33%  Similarity=0.757  Sum_probs=24.2

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf             649988888772899999999857811
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIE   93 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~   93 (404)
                      +.+-+-|+.|.|||-+|..+.+.+|..
T Consensus        26 ~nIlIsG~tGSGKTTll~al~~~i~~~   52 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAFIPPD   52 (186)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf             989998999998999999999613345


No 236
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=90.89  E-value=1.3  Score=23.89  Aligned_cols=135  Identities=14%  Similarity=0.088  Sum_probs=74.9

Q ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCH
Q ss_conf             74887789899999999999999986135433322566431024666666886499888887728999999998578111
Q gi|254781047|r   15 QDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEK   94 (404)
Q Consensus        15 ~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~   94 (404)
                      ....+.+-+.|..++.++.....+                           .+-.++--+.|.|||++--.....+..+-
T Consensus        31 ~~~~~~lr~yQ~~al~a~~~~~~~---------------------------~~~gvivlpTGaGKT~va~~~~~~~~~~~   83 (442)
T COG1061          31 VAFEFELRPYQEEALDALVKNRRT---------------------------ERRGVIVLPTGAGKTVVAAEAIAELKRST   83 (442)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCC---------------------------CCCEEEEECCCCCHHHHHHHHHHHHCCCE
T ss_conf             235788859999999999962225---------------------------78679996799988999999999826988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCC------CCCCCCCCCCH-------HHHHHH-----HHHC-CCCEEEEEEEEECCCHH
Q ss_conf             46888999999999999997131------12246655780-------789999-----9961-38799984232047135
Q gi|254781047|r   95 KCRLHFYEFMKDVHSRIIMYRKK------IEFGEILESDP-------IPLVAS-----SIAL-ESRVLCFDEFMITNIAD  155 (404)
Q Consensus        95 K~R~HFh~FM~~ih~~l~~~~~~------~~~~~~~~~dp-------l~~va~-----~l~~-~~~lLCfDEF~V~DiaD  155 (404)
                      --=+|-.+.+.+-.+++...-..      .++.. ....|       ++.++.     +... +..+|-|||.|-.=...
T Consensus        84 Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~~~~~-~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~  162 (442)
T COG1061          84 LVLVPTKELLDQWAEALKKFLLLNDEIGIYGGGE-KELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS  162 (442)
T ss_pred             EEEECCHHHHHHHHHHHHHHCCCCCCCCEECCCC-CCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
T ss_conf             9997829999999999997348867660336872-335777489998389764155554035666759997524578477


Q ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf             88899999999854968998178686
Q gi|254781047|r  156 AIILSRLFAALFSHGCIIVMTSNFIP  181 (404)
Q Consensus       156 Amil~rl~~~lf~~gv~lV~TSN~~P  181 (404)
                      +-.+...+...+.    ++.=+=+||
T Consensus       163 ~~~~~~~~~~~~~----~LGLTATp~  184 (442)
T COG1061         163 YRRILELLSAAYP----RLGLTATPE  184 (442)
T ss_pred             HHHHHHHHHCCCE----EEEEECCCC
T ss_conf             9999997510310----467714872


No 237
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=90.82  E-value=0.9  Score=24.95  Aligned_cols=121  Identities=16%  Similarity=0.182  Sum_probs=74.2

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH-----HCCC
Q ss_conf             86499888887728999999998578111468889999999999999971311224665578078999999-----6138
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI-----ALES  140 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l-----~~~~  140 (404)
                      +...-..|+.|+|||-+--.|-..+-.....+-|. +        ++.+...  .+.+..-|-+..+-+++     ..++
T Consensus        26 ~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~-D--------~~~~~~~--~~~~I~vd~IR~l~~~~~~~p~~g~~   94 (313)
T PRK05564         26 SHASLIVGEDGIGKSILAKEIANKILGKSEQREYV-D--------IIEYKPI--NKKSIGVDDIRNIIEEVNKKPYEGDK   94 (313)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCC-C--------EEEEECC--CCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             75043279998509999999999982899778898-6--------5886332--25699989999999998408625895


Q ss_pred             CEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf             799984232047135888999999998549689981786867752387405668989999985050898047
Q gi|254781047|r  141 RVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS  212 (404)
Q Consensus       141 ~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~  212 (404)
                      +|.-+||-+--..+-|=-|=+.++.=-.+-+.+.+|.|  |+.|             +..|..+|.++++..
T Consensus        95 KV~II~~ae~m~~~AaNALLKtLEEPP~~t~fIL~t~~--~~~l-------------LpTI~SRCQ~~~f~~  151 (313)
T PRK05564         95 KVIIIYKSEKMTEQAQNAFLKTIEEPPKGVFIILLCEN--LEQI-------------LDTIKSRCQIYKLNR  151 (313)
T ss_pred             EEEEECCHHHHCHHHHHHHHHCCCCCCCCEEEEEEECC--HHHC-------------CCHHHCCCEEEECCC
T ss_conf             69998077775899999984550368998589986498--3547-------------577870653566899


No 238
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380    Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=90.58  E-value=0.18  Score=29.43  Aligned_cols=27  Identities=26%  Similarity=0.267  Sum_probs=22.7

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             864998888877289999999985781
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      -|=+=|+.+.|+|||+||-++.+..+.
T Consensus       153 GQRiGIFA~aG~GKSTLL~~i~~g~~A  179 (430)
T TIGR02546       153 GQRIGIFAGAGVGKSTLLGMIARGASA  179 (430)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHCCCCC
T ss_conf             530578708886166899998618988


No 239
>KOG0989 consensus
Probab=90.53  E-value=0.99  Score=24.70  Aligned_cols=126  Identities=17%  Similarity=0.207  Sum_probs=70.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCHHHHHHHHHH------
Q ss_conf             49988888772899999999857811--14688899999999999999--713112246655780789999996------
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIE--KKCRLHFYEFMKDVHSRIIM--YRKKIEFGEILESDPIPLVASSIA------  137 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~--~K~R~HFh~FM~~ih~~l~~--~~~~~~~~~~~~~dpl~~va~~l~------  137 (404)
                      -.-.||++|+|||=---+|-..+-.+  .+.|+-          .++.  .+|..     ...--+.-.++-..      
T Consensus        59 ~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl----------~lnaSderGis-----vvr~Kik~fakl~~~~~~~~  123 (346)
T KOG0989          59 HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVL----------ELNASDERGIS-----VVREKIKNFAKLTVLLKRSD  123 (346)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHH----------HHCCCCCCCCC-----CHHHHHCCHHHHHHCCCCCC
T ss_conf             0786689998676899999998557423555424----------31366001431-----00665237998750255656


Q ss_pred             ----CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf             ----1387999842320471358889999999985496899817868677523874056689899999850508980473
Q gi|254781047|r  138 ----LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSG  213 (404)
Q Consensus       138 ----~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~  213 (404)
                          .-++++-|||-+----.----|.|.++. +.+.++.|.--|+.- .|             |.-|..+|.-+....-
T Consensus       124 ~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~-~s~~trFiLIcnyls-ri-------------i~pi~SRC~KfrFk~L  188 (346)
T KOG0989         124 GYPCPPFKIIILDECDSMTSDAQAALRRTMED-FSRTTRFILICNYLS-RI-------------IRPLVSRCQKFRFKKL  188 (346)
T ss_pred             CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHC-CCCCEEEEEECCCHH-HC-------------CHHHHHHHHHHCCCCC
T ss_conf             78898632899741645309999999999862-546659999738856-47-------------7287746777128876


Q ss_pred             CH----HHHCCCCC
Q ss_conf             11----22112367
Q gi|254781047|r  214 QD----YRRKEQSI  223 (404)
Q Consensus       214 ~D----YR~~~~~~  223 (404)
                      .|    +|+..+..
T Consensus       189 ~d~~iv~rL~~Ia~  202 (346)
T KOG0989         189 KDEDIVDRLEKIAS  202 (346)
T ss_pred             CHHHHHHHHHHHHH
T ss_conf             44789999999988


No 240
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128   The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation.
Probab=90.49  E-value=0.26  Score=28.42  Aligned_cols=92  Identities=17%  Similarity=0.238  Sum_probs=55.7

Q ss_pred             CCHHHHHHHHHHCC---EEEECCCCCCCC-----CCHHHHHHHHHHHHHHHCCCCCE-EEECCCCHHHHCCCCCCCCCHH
Q ss_conf             24689999985378---899818987872-----46389998999999982289828-9980789788013467653134
Q gi|254781047|r  287 LSANDFVEIANRFD---VVIINDIPLLKE-----DRKDWIKRFIMLIDVFYEHKIGL-IISSEENIEDLFPYKLRKGAFE  357 (404)
Q Consensus       287 lg~~DYi~Ia~~f~---ti~I~~VP~l~~-----~~~d~arRFI~LID~lYd~kv~L-i~sa~~~~~~L~~~~~~~~~F~  357 (404)
                      .+..-=++|..+.+   |+++|+.|.|..     +-.-++|-|-         +|-+ =+-+.+.++.+| |+.. ++-+
T Consensus       439 ~A~~~lL~L~pn~~RRiW~i~DELPsLHkLp~L~~~~AE~RKFG---------GC~vlG~QS~aQL~~IY-G~~~-GA~~  507 (613)
T TIGR02759       439 IASRSLLSLAPNDDRRIWFIMDELPSLHKLPDLAETIAEVRKFG---------GCYVLGIQSFAQLEKIY-GQNA-GAAT  507 (613)
T ss_pred             HHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHH---------HHHHHHHCCHHHHHHHC-CCCH-HHHH
T ss_conf             99988734688999727888732335445510453520000324---------68988712367765423-7714-5899


Q ss_pred             -HH----HHHHHHHHHCCHHHHHHCCCCCCHHHHHHCCCC
Q ss_conf             -89----989887452427889724442693355425863
Q gi|254781047|r  358 -IQ----RTVSRLYEMFSAQYIGKNKIIIDACKILLSNKS  392 (404)
Q Consensus       358 -f~----Rt~SRL~EMqS~~yl~~~~~~~~~~~~~~~~~~  392 (404)
                       ++    |..=|.-+-+-.+|+.+.   +|+.++.-++|+
T Consensus       508 l~dllnTr~fFR~P~~~~A~~~s~~---lGe~EI~~~~E~  544 (613)
T TIGR02759       508 LFDLLNTRFFFRSPSAKMAKIVSED---LGEQEIEESKEN  544 (613)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHH---HCHHHHHHHHCC
T ss_conf             9977765676507888799999984---167889986137


No 241
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.42  E-value=1.4  Score=23.78  Aligned_cols=24  Identities=33%  Similarity=0.415  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             499888887728999999998578
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      =+-|-|+=|+|||-|+.+..-.++
T Consensus        30 ~vaiiG~nGsGKSTLl~~l~Gll~   53 (275)
T PRK13639         30 MIAILGPNGAGKSTLFLHFNGILK   53 (275)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999999999649999999973989


No 242
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=90.41  E-value=1.5  Score=23.62  Aligned_cols=24  Identities=29%  Similarity=0.545  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             499888887728999999998578
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      =+=|-|+=|.|||-||++..-..+
T Consensus        28 i~~liGpNGaGKSTL~~~i~Gl~~   51 (230)
T TIGR03410        28 VTCVLGRNGVGKTTLLKTLMGLLP   51 (230)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999999999409999999977999


No 243
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=90.32  E-value=0.42  Score=27.05  Aligned_cols=133  Identities=11%  Similarity=0.111  Sum_probs=78.5

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHH-----HH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH--
Q ss_conf             88649988888772899999999857811146-----88-89999999999999971311224665578078999999--
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKC-----RL-HFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI--  136 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~-----R~-HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l--  136 (404)
                      -|-++.++|+.|.||+-+...|-..+-+....     .- .-+-|...-|-.+|...-...+ ....-|-+..+.+.+  
T Consensus        24 l~HA~L~~g~~G~Gk~~la~~la~~LlC~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~pe~~~-k~I~vd~IR~l~~~~~~  102 (319)
T PRK06090         24 IPGALLLQSDEGLGVESLVELFSHALLCQNYQSEACGFCHSCELMKSGNHPDLHVIKPEKEG-KSITVEQIRQCNRLAQE  102 (319)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCC-CCCCHHHHHHHHHHHHH
T ss_conf             63067667999857999999999998089999998877877999875899982366123356-76879999999999754


Q ss_pred             ---HCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf             ---61387999842320471358889999999985496899817868677523874056689899999850508980473
Q gi|254781047|r  137 ---ALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSG  213 (404)
Q Consensus       137 ---~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~  213 (404)
                         .+.++|+.+|+-+--..+-|=-|=+.+|.= ..+++++.+|+.+ +.|             +..|..+|..+++...
T Consensus       103 ~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEP-p~~t~fiL~t~~~-~~l-------------l~TI~SRCq~~~l~~p  167 (319)
T PRK06090        103 SSQLGGYRLFVIEPADAMNESASNALLKTLEEP-APNCLFLLVTHNQ-KRL-------------LPTIVSRCQQWVVTPP  167 (319)
T ss_pred             CCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCC-CCCEEEEEEECCH-HHC-------------CCCHHHCCCCCCCCCC
T ss_conf             521069369998144434999999999984289-9883899876851-208-------------6418761445028995


No 244
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461    Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=89.70  E-value=0.34  Score=27.67  Aligned_cols=129  Identities=20%  Similarity=0.304  Sum_probs=83.8

Q ss_pred             EEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH---HHHHHHHHHH--HHHCCCCCCCCCCCCHHHHHHHHHHCC-CC-E
Q ss_conf             988888772899999999857811146888999---9999999999--971311224665578078999999613-87-9
Q gi|254781047|r   70 YLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYE---FMKDVHSRII--MYRKKIEFGEILESDPIPLVASSIALE-SR-V  142 (404)
Q Consensus        70 YL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~---FM~~ih~~l~--~~~~~~~~~~~~~~dpl~~va~~l~~~-~~-l  142 (404)
                      -+-|++|+|||=+.-=+-..+-...|-==-++.   |-+++=..|.  ++||.-       +.=|+.|+++|.++ -. |
T Consensus       233 l~VGEPGVGKTAI~EGLA~~I~~~~kvPe~Lkn~~IY~LDmG~LLAGTKYRGDF-------E~RLK~V~~Ei~~~~~anI  305 (774)
T TIGR02639       233 LLVGEPGVGKTAIVEGLAQRIAEGQKVPEVLKNAKIYSLDMGTLLAGTKYRGDF-------EERLKAVVSEIEKEPNANI  305 (774)
T ss_pred             CEECCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECHHHHHHHCCCCCHH-------HHHHHHHHHHHHCCCCCCE
T ss_conf             204488864489999999986415646700247834540434564102454247-------8999999999852899954


Q ss_pred             EEEEEEEECCC-----HHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf             99842320471-----358889999999985496899817868677523874056689899999850508980473
Q gi|254781047|r  143 LCFDEFMITNI-----ADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSG  213 (404)
Q Consensus       143 LCfDEF~V~Di-----aDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~  213 (404)
                      |+|||-|--==     +-+|=-++||+-.+..|.+=.+=|-+.-+  |++=.-+|+      .|-+||.=++++.+
T Consensus       306 LFIDEIHTIVGAGATSGGsmDASNLLKPaL~~G~iRCIGsTTy~E--Y~~~FeKDr------ALsRRFQKIDv~EP  373 (774)
T TIGR02639       306 LFIDEIHTIVGAGATSGGSMDASNLLKPALASGKIRCIGSTTYEE--YKNHFEKDR------ALSRRFQKIDVGEP  373 (774)
T ss_pred             EEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCHHH--HHCHHHCCC------CCCCCCCEECCCCC
T ss_conf             664110103317878751552443211253078778622652486--411101020------21654233117957


No 245
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=89.64  E-value=1.6  Score=23.33  Aligned_cols=74  Identities=22%  Similarity=0.169  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCH-----------HHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHH-
Q ss_conf             99999999999999713112246655780-----------789999996138799984232047135888999999998-
Q gi|254781047|r  100 FYEFMKDVHSRIIMYRKKIEFGEILESDP-----------IPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALF-  167 (404)
Q Consensus       100 Fh~FM~~ih~~l~~~~~~~~~~~~~~~dp-----------l~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf-  167 (404)
                      ++++..++.+++...+++.+.-  .-.|-           =+.++..+-.+++.+.+||||=||+.-=-|+.+|+.... 
T Consensus       330 l~~l~~~~~~~~~~~K~~r~~l--dFdDl~~~~~~lL~~~~~~l~~~lr~~~~~iLIDEfQDT~~~Q~~Il~~l~~~~~~  407 (1139)
T COG1074         330 LLKLLEELIERYDAEKRQRNAL--DFDDLIHRLAKLLTSEGEELAESLREQYPHILIDEFQDTDPQQWRILSRLFAGFKA  407 (1139)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf             9999999999999999885778--98999999999984583999999984798588740345998899999999725667


Q ss_pred             -HCCCEEEE
Q ss_conf             -54968998
Q gi|254781047|r  168 -SHGCIIVM  175 (404)
Q Consensus       168 -~~gv~lV~  175 (404)
                       ++++++|.
T Consensus       408 ~~~~lF~VG  416 (1139)
T COG1074         408 GNRTLFLVG  416 (1139)
T ss_pred             CCCCEEEEC
T ss_conf             785079974


No 246
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=89.61  E-value=0.34  Score=27.61  Aligned_cols=132  Identities=14%  Similarity=0.148  Sum_probs=75.8

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHH-------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH-
Q ss_conf             86499888887728999999998578111468-------8899999999999999713112246655780789999996-
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCR-------LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIA-  137 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R-------~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~-  137 (404)
                      |-..-++|+.|+||+-+...|-..+-+....-       -.-+-+....|-.+|...-...+ ....-|-+..+.+.+. 
T Consensus        22 ~HA~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~~~HPD~~~i~pe~~~-~~I~IdqIR~l~~~~~~  100 (328)
T PRK05707         22 AHAYLLHGPAGIGKRALAERLAAFLLCEAPQGGGACGSCKGCQLLAAGSHPDNFVLEPEEAD-KPIKVDQVRELVSFVVQ  100 (328)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCC-CCCCHHHHHHHHHHHHH
T ss_conf             20464479998679999999999984899999899988889999875899987998426667-76979999999999831


Q ss_pred             ----CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf             ----1387999842320471358889999999985496899817868677523874056689899999850508980473
Q gi|254781047|r  138 ----LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSG  213 (404)
Q Consensus       138 ----~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~  213 (404)
                          ...+|..+|+.+--..+-|=-|=+.+|.==. ++++|..|+. |+.|             ...|..+|.++.+...
T Consensus       101 ~~~~g~~KV~iI~~Ae~m~~~AaNALLKtLEEPp~-~t~fiL~t~~-~~~l-------------LpTI~SRCq~~~~~~p  165 (328)
T PRK05707        101 TAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSG-QTVLLLISHQ-PSRL-------------LPTIKSRCQQLACPLP  165 (328)
T ss_pred             CCCCCCCEEEEEEHHHHHCHHHHHHHHHHHHCCCC-CEEEEEEECC-HHHC-------------HHHHHHCCEEEECCCC
T ss_conf             76678957999502877389999999998507898-7599986099-3448-------------2588741413348998


No 247
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=89.53  E-value=1.7  Score=23.17  Aligned_cols=26  Identities=31%  Similarity=0.517  Sum_probs=21.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             64998888877289999999985781
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      .=+=|-|+-|+|||-|+.+..-.++.
T Consensus        26 E~v~iiG~nGaGKSTLl~~i~Gll~p   51 (233)
T PRK10771         26 EQVAILGPSGAGKSTLLNLIAGFLTP   51 (233)
T ss_pred             CEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf             89999999998199999999659999


No 248
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=89.46  E-value=1.7  Score=23.14  Aligned_cols=20  Identities=25%  Similarity=0.391  Sum_probs=15.3

Q ss_pred             EEEEECCCCCCHHHHHHHHH
Q ss_conf             49988888772899999999
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFF   87 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy   87 (404)
                      .+-++++.|.|||+.+-+..
T Consensus         2 ~~lv~~ptGsGKT~~~~~~~   21 (144)
T cd00046           2 DVLLAAPTGSGKTLAALLPI   21 (144)
T ss_pred             CEEEECCCCCHHHHHHHHHH
T ss_conf             99998899717999999999


No 249
>PRK04040 adenylate kinase; Provisional
Probab=89.39  E-value=0.65  Score=25.87  Aligned_cols=45  Identities=20%  Similarity=0.265  Sum_probs=36.3

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             8649988888772899999999857811146888999999999999
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRI  111 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l  111 (404)
                      ++=+++-|-+|+|||-+++..-+-++... +-+-|-++|.++-.+.
T Consensus         2 ~k~VvvtGiPGvGKTTv~~~~~~~l~~~~-~~vn~G~~M~e~A~~~   46 (189)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDY-KIVNFGDVMLEVAKEE   46 (189)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEHHHHHHHHHHHC
T ss_conf             41899975898878999999999723587-5986779999999981


No 250
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=89.35  E-value=0.83  Score=25.19  Aligned_cols=42  Identities=31%  Similarity=0.434  Sum_probs=25.8

Q ss_pred             CCCEEEEECCCCCCHHHHHHH-HHHH----------CCCCHHHHHHHHHHHHH
Q ss_conf             886499888887728999999-9985----------78111468889999999
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNL-FFAL----------VPIEKKCRLHFYEFMKD  106 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdl-Fy~~----------l~~~~K~R~HFh~FM~~  106 (404)
                      .|.---|-|+||+|||.+--+ .+.+          +|+.==.+-||..|-..
T Consensus       277 ~~m~rllqGDVGsGKT~va~~a~~~~~~~g~q~a~maPTeiLa~Qh~~~~~~~  329 (677)
T PRK10917        277 KPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYRNLKKW  329 (677)
T ss_pred             CCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf             54277732876788899999999999981994899876799999999999987


No 251
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=89.20  E-value=1.3  Score=24.03  Aligned_cols=44  Identities=11%  Similarity=0.029  Sum_probs=24.7

Q ss_pred             HHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             999998537889981898787246389998999999982289828998
Q gi|254781047|r  291 DFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIIS  338 (404)
Q Consensus       291 DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~s  338 (404)
                      +--.+...|+|.+=++=..++    --.|.=|.+.=++|.+---|++.
T Consensus       583 ~I~~lp~g~~t~i~e~G~~LS----gGqrQri~lARAl~~~p~ililD  626 (694)
T TIGR03375       583 FVRRHPDGLDMQIGERGRSLS----GGQRQAVALARALLRDPPILLLD  626 (694)
T ss_pred             HHHHCCCCCCCEECCCCCCCC----HHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             997185667877468999468----99999999999995799989997


No 252
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=89.12  E-value=0.51  Score=26.52  Aligned_cols=128  Identities=11%  Similarity=0.116  Sum_probs=77.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHHH------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH-----H
Q ss_conf             49988888772899999999857811146------888999999999999997131122466557807899999-----9
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEKKC------RLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASS-----I  136 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~------R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~-----l  136 (404)
                      .--..|+-|+|||.+--.|-.++.+...-      --.-..++...|-.++...-.   +.+..-|-+..+..+     .
T Consensus        41 AyLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~~~cg~C~~C~~i~~g~hpDv~~i~p~---~~~i~id~iR~l~~~~~~~p~  117 (395)
T PRK07940         41 AWLFTGPPGSGRSNAARAFAAALQCTDPGVPGCGECRACRTVLAGTHPDVRVVVPE---GLSIGVDEVREIVQIAARRPT  117 (395)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECC---CCCCCHHHHHHHHHHHHHCCC
T ss_conf             37636899878899999999996699999999987878999876899871898268---776889999999999852730


Q ss_pred             HCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf             61387999842320471358889999999985496899817868677523874056689899999850508980473
Q gi|254781047|r  137 ALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSG  213 (404)
Q Consensus       137 ~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~  213 (404)
                      ...++|.-+||.+--...-|=-|=+.++.==.+-+.|.+|+|  |+.|          +   ..|..+|..+++...
T Consensus       118 ~~~~kv~ii~~a~~m~~~a~NalLKtLEEPp~~~~fiL~t~~--~~~l----------l---pTI~SRcq~~~f~~~  179 (395)
T PRK07940        118 TGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS--VEDV----------L---PTIRSRCRHVALRTP  179 (395)
T ss_pred             CCCCEEEEEECHHHHCHHHHHHHHHHHCCCCCCEEEEEEECC--HHHH----------H---HHHHHHHEECCCCCC
T ss_conf             379559998077874899999999852178888699987399--7874----------4---688744000237999


No 253
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms.  SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes.  The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge.  SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=89.12  E-value=1.8  Score=22.99  Aligned_cols=112  Identities=18%  Similarity=0.101  Sum_probs=55.7

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCH-H-HH--HHH---------------HHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             86499888887728999999998578111-4-68--889---------------99999999999997131122466557
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEK-K-CR--LHF---------------YEFMKDVHSRIIMYRKKIEFGEILES  126 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~-K-~R--~HF---------------h~FM~~ih~~l~~~~~~~~~~~~~~~  126 (404)
                      +.=..|.|+=|+|||=++|+..=.+-.+. + +|  .++               -.++.+...-+  .++....-.++.+
T Consensus        22 ~~~~~ivG~nGsGKSni~~ai~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~a~v~~~~~~~~~~v--~qg~~~~lLSGGE   99 (178)
T cd03239          22 NSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLV--LQGKVEQILSGGE   99 (178)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC--CCCCHHHCCCCCH
T ss_conf             98179989998877899999999986642765200135432443556744236799998754044--1244100167525


Q ss_pred             CHHHHHHHHH----HCCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHHCC-CEEEEECCC
Q ss_conf             8078999999----6138799984232-047135888999999998549-689981786
Q gi|254781047|r  127 DPIPLVASSI----ALESRVLCFDEFM-ITNIADAIILSRLFAALFSHG-CIIVMTSNF  179 (404)
Q Consensus       127 dpl~~va~~l----~~~~~lLCfDEF~-V~DiaDAmil~rl~~~lf~~g-v~lV~TSN~  179 (404)
                      -.+-.+|--+    .+...+.++||.. --|.+....+.+++..+.+++ -++|+|=|.
T Consensus       100 ksl~alal~~ai~~~~p~p~~iLDEvdAaLD~~N~~r~~~~i~el~~~~sQfIiITH~~  158 (178)
T cd03239         100 KSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK  158 (178)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             89999999999971389966998276554798899999999999973899899998689


No 254
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=89.02  E-value=0.19  Score=29.24  Aligned_cols=31  Identities=19%  Similarity=0.178  Sum_probs=25.0

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             6668864998888877289999999985781
Q gi|254781047|r   62 KYCSMQGIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        62 ~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      .+..|-=+=+||..|+|||++-.+.-+++-.
T Consensus        49 ~p~KpLVlSfHG~tGtGKn~vs~liA~~Ly~   79 (127)
T pfam06309        49 KPRKPLVLSFHGWTGTGKNFVAEIIADNLYR   79 (127)
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf             9999748870189998798999999999875


No 255
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=88.85  E-value=1.8  Score=23.05  Aligned_cols=115  Identities=28%  Similarity=0.359  Sum_probs=54.6

Q ss_pred             CCEEEEECCCCCCHHHHHHHH----HHH-------CCCCHHHHHHHHHHHHHHHH-HHH--HHHCCCCCCCCCCCCHHHH
Q ss_conf             864998888877289999999----985-------78111468889999999999-999--9713112246655780789
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLF----FAL-------VPIEKKCRLHFYEFMKDVHS-RII--MYRKKIEFGEILESDPIPL  131 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlF----y~~-------l~~~~K~R~HFh~FM~~ih~-~l~--~~~~~~~~~~~~~~dpl~~  131 (404)
                      |.-=-|-|+||+|||+.--+-    +++       +|+.==-+-||+.|..-.-. -+.  -+-+...+  ...+.-+..
T Consensus       283 ~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kg--k~r~~~l~~  360 (677)
T COG1200         283 PMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKG--KARKEILEQ  360 (677)
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH--HHHHHHHHH
T ss_conf             667875267677789999999999987288168866379999999999998766519748986446650--679999998


Q ss_pred             HHHH---HHCCCCEEEEEEEEECCCHHHHH--------HHHHHHHHHHCCC----EEEEECCCCHHHH
Q ss_conf             9999---96138799984232047135888--------9999999985496----8998178686775
Q gi|254781047|r  132 VASS---IALESRVLCFDEFMITNIADAII--------LSRLFAALFSHGC----IIVMTSNFIPENL  184 (404)
Q Consensus       132 va~~---l~~~~~lLCfDEF~V~DiaDAmi--------l~rl~~~lf~~gv----~lV~TSN~~P~dL  184 (404)
                      +++.   +.=.++=|+-|+.+-+|.|=++|        --|+  .|.++|.    +||+|--=-|.-|
T Consensus       361 l~~G~~~ivVGTHALiQd~V~F~~LgLVIiDEQHRFGV~QR~--~L~~KG~~~Ph~LvMTATPIPRTL  426 (677)
T COG1200         361 LASGEIDIVVGTHALIQDKVEFHNLGLVIIDEQHRFGVHQRL--ALREKGEQNPHVLVMTATPIPRTL  426 (677)
T ss_pred             HHCCCCCEEEECCHHHHCCEEECCEEEEEEECCCCCCHHHHH--HHHHHCCCCCCEEEEECCCCHHHH
T ss_conf             747998979972212204504420238997252102299999--999737899967999579850788


No 256
>KOG2170 consensus
Probab=88.70  E-value=2  Score=22.80  Aligned_cols=120  Identities=17%  Similarity=0.135  Sum_probs=57.3

Q ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCH--HHHH-HHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf             6666886499888887728999999998578111--4688-899---999999999999713112246655780789999
Q gi|254781047|r   61 RKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEK--KCRL-HFY---EFMKDVHSRIIMYRKKIEFGEILESDPIPLVAS  134 (404)
Q Consensus        61 ~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~--K~R~-HFh---~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~  134 (404)
                      +.+..|-=|=+||..|+||++.-.+.-+.+--..  .-.+ ||+   +|=..  +.+..++.+          --..|..
T Consensus       105 ~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~--~~ie~Yk~e----------L~~~v~~  172 (344)
T KOG2170         105 PNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA--SKIEDYKEE----------LKNRVRG  172 (344)
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCH--HHHHHHHHH----------HHHHHHH
T ss_conf             9999875898308998756489999999987511256268876554159976--789999999----------9999999


Q ss_pred             HHH-CCCCEEEEEEEEECCCHHHHHHHHHHHHHH------HCCCEEEEECCCCHH-------HHHCCCCCHH
Q ss_conf             996-138799984232047135888999999998------549689981786867-------7523874056
Q gi|254781047|r  135 SIA-LESRVLCFDEFMITNIADAIILSRLFAALF------SHGCIIVMTSNFIPE-------NLYKDEINRN  192 (404)
Q Consensus       135 ~l~-~~~~lLCfDEF~V~DiaDAmil~rl~~~lf------~~gv~lV~TSN~~P~-------dLY~~GLqR~  192 (404)
                      ... -...|.-|||..--..+=-=-|+.+++...      -+..+.|.-||.--+       +.+++|..|+
T Consensus       173 ~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~g~~re  244 (344)
T KOG2170         173 TVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENARNGKPRE  244 (344)
T ss_pred             HHHHCCCCEEEECHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCC
T ss_conf             998557754873105435876999876663046321355455148999717861477999999997479756


No 257
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=88.65  E-value=2  Score=22.78  Aligned_cols=28  Identities=29%  Similarity=0.437  Sum_probs=19.8

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             8864998888877289999999985781
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      +..-+-|-|+-|.|||-|.++...-.+.
T Consensus       354 ~Ge~vaiVG~sGsGKSTl~~LL~r~~~~  381 (567)
T COG1132         354 PGEKVAIVGPSGSGKSTLIKLLLRLYDP  381 (567)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf             8987888558888578999999861588


No 258
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=88.59  E-value=2  Score=22.76  Aligned_cols=25  Identities=28%  Similarity=0.457  Sum_probs=21.0

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             6499888887728999999998578
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      .=+-|-|+-|+|||-|+.+...-++
T Consensus        34 e~~~i~G~sGsGKSTLlk~i~gl~~   58 (225)
T PRK10247         34 EFKLITGPSGCGKSTLLKIVASLIS   58 (225)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             6999999999999999999964668


No 259
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=88.44  E-value=0.58  Score=26.18  Aligned_cols=28  Identities=39%  Similarity=0.577  Sum_probs=24.2

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf             8649988888772899999999857811
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIE   93 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~   93 (404)
                      -|-+.+-|++|+|||||-.++-+.+|.+
T Consensus        50 rrhvlliG~PGtGKSmlakam~elLpk~   77 (637)
T PRK13765         50 RRHVMLIGSPGTGKSMLAKAMAELLPKE   77 (637)
T ss_pred             HCCEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf             3738986899987999999999757988


No 260
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake.  NatB possess six putative membrane spanning regions at its C-terminus.  In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane.  The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system.  Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=88.36  E-value=2.1  Score=22.66  Aligned_cols=51  Identities=18%  Similarity=0.264  Sum_probs=33.8

Q ss_pred             HHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf             999999613879998423-204713588899999999854968998178686
Q gi|254781047|r  131 LVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIP  181 (404)
Q Consensus       131 ~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P  181 (404)
                      .+|..++.+-++|++||= ---|+...-.+..++..+-+.|.+++.||...-
T Consensus       146 ~la~al~~~P~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~til~~sH~l~  197 (218)
T cd03266         146 AIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ  197 (218)
T ss_pred             HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf             9999986699899997987676999999999999999857999999898789


No 261
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=88.17  E-value=0.57  Score=26.24  Aligned_cols=44  Identities=32%  Similarity=0.289  Sum_probs=30.1

Q ss_pred             CCCEEEEEEE-EE----CCCHH-HHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf             3879998423-20----47135-888999999998549689981786867
Q gi|254781047|r  139 ESRVLCFDEF-MI----TNIAD-AIILSRLFAALFSHGCIIVMTSNFIPE  182 (404)
Q Consensus       139 ~~~lLCfDEF-~V----~DiaD-Amil~rl~~~lf~~gv~lV~TSN~~P~  182 (404)
                      +.+.+.+|=+ .+    .|... =--+-+|+..|-..|++.++||-...+
T Consensus       123 ~~~RvViDSlt~l~~~~~~~~~~R~~l~~L~~~l~~~g~T~llt~E~~~~  172 (501)
T PRK09302        123 KAKRVVIDSIEALFQQYDNPAVVRRELFRLFAWLKQKGVTAVMTGERGDE  172 (501)
T ss_pred             CCCEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             99999999978998763587899999999999998779779998756666


No 262
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=88.07  E-value=0.5  Score=26.57  Aligned_cols=22  Identities=32%  Similarity=0.626  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q ss_conf             4998888877289999999985
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFAL   89 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~   89 (404)
                      =|.|.|..|.|||+|+.-+...
T Consensus         2 ~i~i~G~aG~GKTtll~kl~~~   23 (165)
T pfam05729         2 TVILQGEAGSGKTTLLQKLALL   23 (165)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
T ss_conf             8999827989899999999999


No 263
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=87.89  E-value=2.2  Score=22.48  Aligned_cols=27  Identities=26%  Similarity=0.564  Sum_probs=22.4

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             886499888887728999999998578
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      +-.=+-|-|+-|+|||-||.+....++
T Consensus        36 ~Ge~~~l~GpNGaGKTTLlr~l~Gl~~   62 (214)
T PRK13543         36 AGEALLVQGDNGAGKTTLLRVLAGLLH   62 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             898999999999879999999976977


No 264
>pfam10236 DAP3 Mitochondrial ribosomal death-associated protein 3. This is a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=87.83  E-value=0.44  Score=26.91  Aligned_cols=26  Identities=31%  Similarity=0.478  Sum_probs=20.0

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf             88649988888772899999999857
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALV   90 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l   90 (404)
                      +...+.|+|+.|+|||++|.-.-..+
T Consensus        22 ~~~r~vL~G~~GsGKS~~L~q~v~~A   47 (274)
T pfam10236        22 KVVRFVLTGERGSGKSVLLAQAMAYA   47 (274)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             95189988979977999999999999


No 265
>pfam02367 UPF0079 Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop.
Probab=87.81  E-value=0.65  Score=25.84  Aligned_cols=88  Identities=18%  Similarity=0.298  Sum_probs=54.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH-HCCCCEEEE
Q ss_conf             6499888887728999999998578111468889999999999999971311224665578078999999-613879998
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI-ALESRVLCF  145 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l-~~~~~lLCf  145 (404)
                      .=++|.|+.|.|||.+...+..++.....  +         -                  -|-=.+++.. ..+..+.=+
T Consensus        16 ~vi~L~G~LGaGKTtfvr~i~~~lg~~~~--V---------~------------------SPTF~lv~~Y~~~~~~i~H~   66 (123)
T pfam02367        16 DVVLLSGDLGAGKTTFVRGLAKGLGITGN--V---------T------------------SPTFTLVNVYEPGKLPLYHY   66 (123)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCCC--C---------C------------------CCCEEEEEEECCCCCEEEEE
T ss_conf             79999888778899999999998599887--3---------7------------------99558899970899639999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf             423204713588899999999854968998178686775
Q gi|254781047|r  146 DEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL  184 (404)
Q Consensus       146 DEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL  184 (404)
                      |=.-+.+..++--++ +.+.+...++++|==..+.++-|
T Consensus        67 DlYRl~~~~e~~~lg-~~e~~~~~~i~~IEWpe~~~~~l  104 (123)
T pfam02367        67 DLYRLEDPEELELLG-ILDYALEDGIILVEWPERLPEIL  104 (123)
T ss_pred             EEECCCCHHHHHHCC-CHHHHCCCCEEEEECCHHHHHHC
T ss_conf             833269977898778-65662699899999923322008


No 266
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=87.78  E-value=2.2  Score=22.44  Aligned_cols=148  Identities=10%  Similarity=0.073  Sum_probs=76.6

Q ss_pred             CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC--CCH
Q ss_conf             138799984232047135888999999998549689981786867752387405668989999985050898047--311
Q gi|254781047|r  138 LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS--GQD  215 (404)
Q Consensus       138 ~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~--~~D  215 (404)
                      ..++|.-+||-+--...-|--|-++++.--.+-+++++|.+  |+.|             +..|..+|..+++..  ..|
T Consensus       140 ~~~kv~Iid~ad~m~~~aaNALLK~LEEPp~~~~fiLit~~--~~~l-------------l~TI~SRCq~~~f~pL~~~d  204 (352)
T PRK09112        140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHS--SGRL-------------LPTIRSRCQPISLKPLDDDE  204 (352)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC--HHHC-------------HHHHHHHCCCCCCCCCCHHH
T ss_conf             88069998187874699999999985348987489988699--7777-------------68999743321488939899


Q ss_pred             HH--HCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCHHHHHHHH-CCHHHH
Q ss_conf             22--112367830220353022689999999860444467763276368089961220211110199985210-246899
Q gi|254781047|r  216 YR--RKEQSILPIYMTPLNSYNRVLMDKLWAHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRP-LSANDF  292 (404)
Q Consensus       216 YR--~~~~~~~~~y~~p~~~~~~~~l~~~f~~l~~~~~~~~~~i~v~~gR~i~v~~~~~~va~f~F~eLC~~~-lg~~DY  292 (404)
                      -.  +..+....    +.  ....... ....+++|......++.-          ..+--..=+...|...| ......
T Consensus       205 i~~~L~~i~~~~----~~--~~~~~~~-~l~~~a~GS~~~Al~L~~----------~~gl~i~~~~~~ll~~p~~d~~~~  267 (352)
T PRK09112        205 LKKALSHLGSKQ----GI--SAGEETE-ALLQRSEGSVRKALLLLN----------YGGLEIIDTVDQLLAGSGFDLPKA  267 (352)
T ss_pred             HHHHHHHHHHCC----CC--CCHHHHH-HHHHHHCCCHHHHHHHHC----------CCHHHHHHHHHHHHHCCCCCHHHH
T ss_conf             999999875126----89--9879999-999870899889998744----------877999999999980899998999


Q ss_pred             HHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             99985378899818987872463899989999999822
Q gi|254781047|r  293 VEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYE  330 (404)
Q Consensus       293 i~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd  330 (404)
                      .++++.+.             .++..-||-.|+|.+-+
T Consensus       268 ~~la~~~~-------------~~~~~~~~~~~~~~l~~  292 (352)
T PRK09112        268 HALAGALS-------------GRESEVQFDLFRDHLLD  292 (352)
T ss_pred             HHHHHHHH-------------CCCCHHHHHHHHHHHHH
T ss_conf             99999984-------------77747899999999999


No 267
>PRK09862 putative ATP-dependent protease; Provisional
Probab=87.77  E-value=0.49  Score=26.63  Aligned_cols=28  Identities=32%  Similarity=0.470  Sum_probs=23.1

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             8864998888877289999999985781
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      .--.+.+.|++|+|||||-.-+-.-+|.
T Consensus       209 GgHnlLl~GpPG~GKTMlA~rlp~ILPp  236 (506)
T PRK09862        209 GGHNLLLIGPPGTGKTMLASRINGLLPD  236 (506)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf             6886598769994598999775123899


No 268
>PRK04328 hypothetical protein; Provisional
Probab=87.76  E-value=1.6  Score=23.36  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=17.9

Q ss_pred             EEEEECCCCCCHHHHHHHHH-HHCC
Q ss_conf             49988888772899999999-8578
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFF-ALVP   91 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy-~~l~   91 (404)
                      -+-|.|++|+|||.|---|- +.+.
T Consensus        26 ~~Lv~G~pGtGKT~la~qFl~~g~~   50 (250)
T PRK04328         26 VVLLSGGPGTGKSIFSQQFLWNGLQ   50 (250)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             9999828999989999999999987


No 269
>PRK10908 cell division protein FtsE; Provisional
Probab=87.67  E-value=2.3  Score=22.40  Aligned_cols=52  Identities=23%  Similarity=0.163  Sum_probs=34.4

Q ss_pred             HHHHHHHHCCCCEEEEEEEEEC-CCHHHHHHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf             8999999613879998423204-713588899999999854968998178686
Q gi|254781047|r  130 PLVASSIALESRVLCFDEFMIT-NIADAIILSRLFAALFSHGCIIVMTSNFIP  181 (404)
Q Consensus       130 ~~va~~l~~~~~lLCfDEF~V~-DiaDAmil~rl~~~lf~~gv~lV~TSN~~P  181 (404)
                      -.+|..++.+-++|.+||=--. |+..+.-+-++++.+-+.|+++|++|....
T Consensus       146 vaiAraL~~~P~iLllDEPt~~LD~~~~~~v~~~l~~l~~~g~tvl~vtHd~~  198 (222)
T PRK10908        146 VGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG  198 (222)
T ss_pred             HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf             99999997699999990987667999999999999999861999999947999


No 270
>TIGR00609 recB exodeoxyribonuclease V, beta subunit; InterPro: IPR004586   Exodeoxyribonuclease V, or RecBCD holoenzyme, (3.1.11.5 from EC) is a multifunctional nuclease with potent ATP-dependent exodeoxyribonuclease activity. Ejection of RecD, as occurs at chi recombinational hotspots, cripples exonuclease activity in favor of recombinagenic helicase activity. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. The complex catalyses exonucleolytic cleavage in either the 5' to 3' or 3' to 5' direction to yield 5-phosphooligonucleotides in the presence of ATP. This is the beta subunit .; GO: 0005524 ATP binding, 0008854 exodeoxyribonuclease V activity, 0006281 DNA repair.
Probab=87.67  E-value=1.6  Score=23.34  Aligned_cols=79  Identities=23%  Similarity=0.219  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH-------------HHHHHHHHCCCCEEEEEEEEECCCHHHHHHH
Q ss_conf             146888999999999999997131122466557807-------------8999999613879998423204713588899
Q gi|254781047|r   94 KKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPI-------------PLVASSIALESRVLCFDEFMITNIADAIILS  160 (404)
Q Consensus        94 ~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl-------------~~va~~l~~~~~lLCfDEF~V~DiaDAmil~  160 (404)
                      -+.++ ++.+..+|++.|...++....  .+..|.|             +.+++.|.+++++..|||||=||+-==-|+.
T Consensus       369 ~~~~~-~~~~l~~v~~~L~~~k~~~~~--~gfddll~~L~~aL~~n~~~~~l~~~ir~~y~~aLIDEFQDTD~~Qy~IF~  445 (1324)
T TIGR00609       369 LKDRV-RLRLLKEVQEELKKEKKRRRE--IGFDDLLSRLEKALKSNEEGEKLAQAIREQYPIALIDEFQDTDPQQYRIFS  445 (1324)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHH
T ss_conf             89999-999999999999998523104--783368999999974086786899999832967887243368878999999


Q ss_pred             HHHHHHH--HCCCEEEE
Q ss_conf             9999998--54968998
Q gi|254781047|r  161 RLFAALF--SHGCIIVM  175 (404)
Q Consensus       161 rl~~~lf--~~gv~lV~  175 (404)
                      ++|.+=-  ..+.+||.
T Consensus       446 ~lf~~~~~~~~~LfLIG  462 (1324)
T TIGR00609       446 KLFIAQKDFETALFLIG  462 (1324)
T ss_pred             HHHHCCCCCCCCCEEEC
T ss_conf             98307886443532431


No 271
>pfam01057 Parvo_NS1 Parvovirus non-structural protein NS1. This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity.
Probab=87.43  E-value=1.1  Score=24.35  Aligned_cols=120  Identities=13%  Similarity=0.150  Sum_probs=59.5

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCHH-----HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH--HHHHHHH
Q ss_conf             8864998888877289999999985781114-----68889999999999999971311224665578078--9999996
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKK-----CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIP--LVASSIA  137 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K-----~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~--~va~~l~  137 (404)
                      ...-|.+||++.+|||+|..+.-.++|.-.-     .-+.|.+..    ..++-+     -.+.  ..+-.  ..++.+.
T Consensus       112 krN~i~~~Gp~~TGks~la~ai~~~~~~~g~v~~~N~~fp~~d~~----~~~~~w-----wee~--~~~~~~ve~~r~il  180 (271)
T pfam01057       112 KRNTVWFYGPASTGKTNLAQAIAHAVPLYGCVNWTNENFPFNDCP----NKLLIW-----WEEG--LMTVKVVELAKAIL  180 (271)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCC----CCEEEE-----ECCC--CCCHHHHHHHHHHH
T ss_conf             875699988987678999999998689527851787788764465----478999-----8078--87188999999972


Q ss_pred             CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf             138799984232047135888999999998549689981786867752387405668989999985050898047
Q gi|254781047|r  138 LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS  212 (404)
Q Consensus       138 ~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~  212 (404)
                      .... +|+|-=+-.             .---....+|+|||.-----..++....-.-   +.|++++..+++..
T Consensus       181 ~G~~-i~vD~k~k~-------------~~~l~~~PviiTsn~di~~v~~g~~~s~~Ha---~~Lk~rm~~~~~~~  238 (271)
T pfam01057       181 GGTD-VRVDQKCKG-------------SVEIEPTPVIITSNHDITLVVDGNTTSFEHA---QPLKDRMYKFNLTK  238 (271)
T ss_pred             CCCC-CEEECCCCC-------------CCCCCCCCEEEEECCCEEEEEECCCCCHHHH---HHHHHHEEEEEECC
T ss_conf             9996-256347898-------------0023799789982785799986875357777---78765368988576


No 272
>PRK04863 mukB cell division protein MukB; Provisional
Probab=87.13  E-value=0.32  Score=27.82  Aligned_cols=48  Identities=31%  Similarity=0.460  Sum_probs=31.8

Q ss_pred             CCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             332256643102466666688649988888772899999999857811146888999
Q gi|254781047|r   46 EQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYE  102 (404)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~  102 (404)
                      ++|+|.+-|.....        =.=|-||=|-|||-+|-.|+-++ ++--.++||-+
T Consensus        15 wNGffARTfdLd~l--------VttLsGgNGAGKSTtMaAf~taL-IPD~tlLhfrn   62 (1486)
T PRK04863         15 WNGFFARTFDLDEL--------VTTLSGGNGAGKSTTMAAFVTAL-IPDLTLLHFRN   62 (1486)
T ss_pred             ECCEEEEEEECCCC--------EEEEECCCCCCHHHHHHHHHHHH-CCCCCEEECCC
T ss_conf             43531013102442--------03300588865798999999996-76430231146


No 273
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter; InterPro: IPR005898   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. This model describes a family of cyclic peptide transporters in bacteria. Syringomycin is an amphipathic, cyclic lipodepsipeptide when inserted into host causes formation of channels, permeable to a variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.; GO: 0005524 ATP binding, 0015197 peptide transporter activity, 0015833 peptide transport, 0016021 integral to membrane.
Probab=87.05  E-value=0.58  Score=26.16  Aligned_cols=49  Identities=22%  Similarity=0.484  Sum_probs=33.2

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHH------------CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             864998888877289999999985------------7811146888999999999999997
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFAL------------VPIEKKCRLHFYEFMKDVHSRIIMY  114 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~------------l~~~~K~R~HFh~FM~~ih~~l~~~  114 (404)
                      -.=+||-|+=|||||-|..+|.--            .|+....|=-|-+...-|.+.-|-.
T Consensus       368 G~~VyIVG~NGCGK~TL~K~l~GLY~PQ~G~~LL~G~~V~~~~R~DYR~LFS~~F~Dy~LF  428 (555)
T TIGR01194       368 GDLVYIVGENGCGKSTLIKLLLGLYIPQEGELLLDGEAVSDDSRDDYRDLFSAVFADYYLF  428 (555)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             5289996488973899999997258787675443575456332023899999998889988


No 274
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR).  DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes.  Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=87.05  E-value=2.5  Score=22.17  Aligned_cols=112  Identities=17%  Similarity=0.158  Sum_probs=71.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCC---C-----------H-H--HHH-------HHHHHHHHHHHHHHH---HHCCCCC
Q ss_conf             4998888877289999999985781---1-----------1-4--688-------899999999999999---7131122
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPI---E-----------K-K--CRL-------HFYEFMKDVHSRIIM---YRKKIEF  120 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~---~-----------~-K--~R~-------HFh~FM~~ih~~l~~---~~~~~~~  120 (404)
                      =+=|-|+-|.|||-||.+..-.+..   +           . +  +++       ++... .-+.+.+..   +++ .  
T Consensus        37 i~~ilGpnGaGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ig~v~Q~~~l~~~-ltv~e~l~~~a~l~~-L--  112 (194)
T cd03213          37 LTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPT-LTVRETLMFAAKLRG-L--  112 (194)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCEECCHHHHHHEEEEECCCCCCCCC-CCHHHHHHHHHHHCC-C--
T ss_conf             999998999519999999857777899628999999999757843128998466523776-849999999987269-8--


Q ss_pred             CCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH
Q ss_conf             4665578078999999613879998423-2047135888999999998549689981786867752
Q gi|254781047|r  121 GEILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLY  185 (404)
Q Consensus       121 ~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY  185 (404)
                        ++..----.+|..++.+-++|++||= -=-|+..+.-+-+++..+-+.|.++|+++-...++++
T Consensus       113 --SgGqrqRv~iA~aL~~~P~illlDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~  176 (194)
T cd03213         113 --SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIF  176 (194)
T ss_pred             --CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
T ss_conf             --8899999999999963998899948987889899999999999999689899999588859999


No 275
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=86.98  E-value=0.6  Score=26.06  Aligned_cols=34  Identities=24%  Similarity=0.355  Sum_probs=24.0

Q ss_pred             CCC-CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf             778-98999999999999999861354333225664310246666668864998888877289999
Q gi|254781047|r   19 LKY-NPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLM   83 (404)
Q Consensus        19 i~~-D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LM   83 (404)
                      |+| ++.|..++..|..                               ..=+.+.|+.|+|||+|-
T Consensus         2 I~P~~~~Q~~~~~~l~~-------------------------------~~iv~~~GpAGtGKT~la   36 (205)
T pfam02562         2 IKPKTLGQKRYVEAIRK-------------------------------NDIVFGIGPAGTGKTYLA   36 (205)
T ss_pred             CCCCCHHHHHHHHHHHC-------------------------------CCEEEEECCCCCCHHHHH
T ss_conf             87898889999999717-------------------------------980799899986099999


No 276
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=86.95  E-value=1.7  Score=23.17  Aligned_cols=28  Identities=21%  Similarity=0.379  Sum_probs=23.8

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf             8649988888772899999999857811
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIE   93 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~   93 (404)
                      .+.+-+-|+.|.|||-||+.+-..+|..
T Consensus       160 r~NilI~G~TgSGKTTll~aL~~~ip~~  187 (332)
T PRK13900        160 KKNIIISGGTSTGKTTFTNAALREIPAI  187 (332)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf             8719998888988999999998358953


No 277
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction.  The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase).  A similar protein is also found in a few bacteria.
Probab=86.86  E-value=1.7  Score=23.25  Aligned_cols=24  Identities=17%  Similarity=0.250  Sum_probs=18.8

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf             649988888772899999999857
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALV   90 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l   90 (404)
                      +=.-|-|+-|+|||.|+++.-+..
T Consensus       158 qr~~I~g~~g~GKT~l~~~i~k~~  181 (369)
T cd01134         158 GTAAIPGPFGCGKTVIQQSLSKYS  181 (369)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHCC
T ss_conf             646776687768999999998537


No 278
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=86.52  E-value=2.6  Score=21.99  Aligned_cols=22  Identities=23%  Similarity=0.311  Sum_probs=15.9

Q ss_pred             EEEEECCCCCCHHHH-HHHHHHH
Q ss_conf             499888887728999-9999985
Q gi|254781047|r   68 GIYLHGDVGQGKSML-MNLFFAL   89 (404)
Q Consensus        68 GlYL~G~VG~GKT~L-MdlFy~~   89 (404)
                      =+-|+|++|+|||.| |.+..+.
T Consensus        25 itei~G~pG~GKTtl~lq~a~~~   47 (224)
T PRK09361         25 ITQIYGPPGSGKTNICIQLAVEA   47 (224)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99998999985999999999999


No 279
>KOG1970 consensus
Probab=86.43  E-value=2.7  Score=21.96  Aligned_cols=107  Identities=14%  Similarity=0.171  Sum_probs=63.0

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCC---------HHHHHH-----------HHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             688649988888772899999999857811---------146888-----------999999999999997131122466
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIE---------KKCRLH-----------FYEFMKDVHSRIIMYRKKIEFGEI  123 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~---------~K~R~H-----------Fh~FM~~ih~~l~~~~~~~~~~~~  123 (404)
                      ...+=+||-|+.|||||--....-.-+-.+         -+---|           |-.+|...-..+-...+       
T Consensus       108 l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~k-------  180 (634)
T KOG1970         108 LGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATK-------  180 (634)
T ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHH-------
T ss_conf             6760799857988871319999998648021230477665665554554400133036678999989999876-------


Q ss_pred             CCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCC---CEEEEE-CCC
Q ss_conf             5578078999999613879998423-2047135888999999998549---689981-786
Q gi|254781047|r  124 LESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHG---CIIVMT-SNF  179 (404)
Q Consensus       124 ~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~g---v~lV~T-SN~  179 (404)
                        -+.+....+++..+-++|.+||+ .+.-+-|+--+..++..+...|   +++|.| |+.
T Consensus       181 --yg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~  239 (634)
T KOG1970         181 --YGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLS  239 (634)
T ss_pred             --HCHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf             --23165313333467507985026144400369999999999984577767999863535


No 280
>smart00350 MCM minichromosome  maintenance proteins.
Probab=86.41  E-value=0.99  Score=24.70  Aligned_cols=105  Identities=24%  Similarity=0.279  Sum_probs=55.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCCCCCH------HHHHHHHHH
Q ss_conf             49988888772899999999857811146888999999999999997131122----46655780------789999996
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEF----GEILESDP------IPLVASSIA  137 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~----~~~~~~dp------l~~va~~l~  137 (404)
                      -+-|-|++|+|||-|+.....-.|..-                  ...|+..+    .....+||      |+.=|--++
T Consensus       238 hiLLvGDPGtgKSqlLk~~~~iaprsv------------------ytsG~gsS~aGLTaav~rd~~~ge~~leaGALVlA  299 (509)
T smart00350      238 NILLLGDPGTAKSQLLKYVEKTAPRAV------------------YTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLA  299 (509)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCEE------------------EEECCCCCCCCCEEEEEECCCCCCEEECCCCEECC
T ss_conf             499846998236299999998588606------------------87344455577068999817888378725641205


Q ss_pred             CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf             1387999842320471358889999999985496899817868677523874056689899999850508980473
Q gi|254781047|r  138 LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSG  213 (404)
Q Consensus       138 ~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~  213 (404)
                      ++ -+.|+|||.=-+..|--   .|.+++ +++.+=|+          |.|+.-        .|+.+|-|+.-.++
T Consensus       300 D~-GiccIDEfdKm~~~dr~---alhEaM-EQQtisia----------KaGi~~--------tL~aR~sVlAAaNP  352 (509)
T smart00350      300 DN-GVCCIDEFDKMDDSDRT---AIHEAM-EQQTISIA----------KAGITT--------TLNARCSVLAAANP  352 (509)
T ss_pred             CC-CEEEEEEHHHCCHHHHH---HHHHHH-HHCEEEEE----------CCCEEE--------EEECCCEEEEEECC
T ss_conf             67-54785213207877899---999999-74877874----------375179--------98557359986556


No 281
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=86.34  E-value=2.7  Score=21.93  Aligned_cols=74  Identities=18%  Similarity=0.240  Sum_probs=50.2

Q ss_pred             HHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHC-CCEEEEECCC-----------------------CHHH
Q ss_conf             78999999613879998423-204713588899999999854-9689981786-----------------------8677
Q gi|254781047|r  129 IPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSH-GCIIVMTSNF-----------------------IPEN  183 (404)
Q Consensus       129 l~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~-gv~lV~TSN~-----------------------~P~d  183 (404)
                      --.+|..|+.+-+||.+||= -=-|..-..-+-.++..|.+. |+++|..+--                       .|++
T Consensus       155 RVaiARAL~~~P~vLLLDEPts~LD~~~r~~~~~~l~~l~~~~g~T~i~VTHD~~eA~~laDrI~VM~~G~I~q~GtP~e  234 (378)
T PRK09452        155 RVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE  234 (378)
T ss_pred             HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCEEEEEECCEEEEEECHHH
T ss_conf             99999986239989995786444799999999999999999849989999889999998699899998998999948899


Q ss_pred             HHCCCCCHH--HHHHHHHHHH
Q ss_conf             523874056--6898999998
Q gi|254781047|r  184 LYKDEINRN--VLVSFIELLE  202 (404)
Q Consensus       184 LY~~GLqR~--~FlPfI~~lk  202 (404)
                      +|.++-++-  .|+-...+|.
T Consensus       235 iy~~P~~~fvA~fiG~~N~l~  255 (378)
T PRK09452        235 IYEEPKNLFVARFIGEINVFD  255 (378)
T ss_pred             HHHCCCCHHHHHHCCCCEEEE
T ss_conf             986899858986378561589


No 282
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=86.30  E-value=2.4  Score=22.30  Aligned_cols=20  Identities=20%  Similarity=0.268  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHCCCCCEEEE
Q ss_conf             98999999982289828998
Q gi|254781047|r  319 KRFIMLIDVFYEHKIGLIIS  338 (404)
Q Consensus       319 rRFI~LID~lYd~kv~Li~s  338 (404)
                      |.=|++-=+++-+.--|++.
T Consensus       455 rQRiaIARAll~~p~ILILD  474 (547)
T PRK10522        455 KKRLALLLALAEERDILLLD  474 (547)
T ss_pred             HHHHHHHHHHHCCCCEEEEE
T ss_conf             99999999997499999996


No 283
>PTZ00243 ABC transporter; Provisional
Probab=86.20  E-value=0.95  Score=24.80  Aligned_cols=112  Identities=12%  Similarity=0.131  Sum_probs=62.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCH-----------------------HHHHHHHH-HHHHHHH----------HHHH
Q ss_conf             499888887728999999998578111-----------------------46888999-9999999----------9999
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEK-----------------------KCRLHFYE-FMKDVHS----------RIIM  113 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~-----------------------K~R~HFh~-FM~~ih~----------~l~~  113 (404)
                      =+=+-|+||+|||-|+.+...-++...                       |-.|=|.+ |=.+-.+          .|..
T Consensus       688 L~~IvG~vGSGKSSLL~aiLGE~~~~~G~v~~~g~iAYv~Q~pWi~n~TiReNILFg~~~d~~rY~~Vi~aCaL~~Dl~~  767 (1560)
T PTZ00243        688 LTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQ  767 (1560)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCHHCCCCHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             89998999987999999996888435638997470897578444058739998108861049999999999678888985


Q ss_pred             HH-------CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCC-HHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             71-------311224665578078999999613879998423-20471-35888999999998549689981786
Q gi|254781047|r  114 YR-------KKIEFGEILESDPIPLVASSIALESRVLCFDEF-MITNI-ADAIILSRLFAALFSHGCIIVMTSNF  179 (404)
Q Consensus       114 ~~-------~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~Di-aDAmil~rl~~~lf~~gv~lV~TSN~  179 (404)
                      +-       |..+..-++.---=-.+|..+-++.+++.+||- ---|. .-.-|+.+.+..+.+...++++|.+.
T Consensus       768 LP~GD~TeIGErGinLSGGQKQRIALARAvYsdadIyLLDDpLSALDahV~~~If~~~I~g~LkgKT~ILVTH~l  842 (1560)
T PTZ00243        768 LGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQV  842 (1560)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             689776630567635771378999999987426775752285433456779999999988886799699996857


No 284
>KOG3928 consensus
Probab=86.05  E-value=0.92  Score=24.90  Aligned_cols=30  Identities=20%  Similarity=0.325  Sum_probs=22.5

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf             688649988888772899999999857811
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIE   93 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~   93 (404)
                      .|.+-+-|||.+|+|||..|....+.+-..
T Consensus       177 ~P~~r~vL~Ge~GtGKSiaL~qa~h~a~~~  206 (461)
T KOG3928         177 HPVKRFVLDGEPGTGKSIALAQAVHYAADQ  206 (461)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf             763589985799876205999999987317


No 285
>pfam01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase. Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.
Probab=85.89  E-value=1.6  Score=23.44  Aligned_cols=79  Identities=15%  Similarity=0.169  Sum_probs=38.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH-HHCCCCEEEEEE
Q ss_conf             9988888772899999999857811146888999999999999997131122466557807899999-961387999842
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASS-IALESRVLCFDE  147 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~-l~~~~~lLCfDE  147 (404)
                      +.++|-.|+|||.+.--+.+.-..     ++--.+     .....+..+......  . -+...... .....+++.+||
T Consensus         1 ~vV~gvpGsGKSt~I~~l~~~~~~-----~~~p~~-----~~~~~~~~~~~~~~~--~-~i~~~~~~~~~~~~~~~iiDE   67 (226)
T pfam01443         1 IVVHGVPGCGKSTLIRKLLRTDLT-----VIRPTA-----ELRTEGKPDLPNLNV--R-TVDTFLMALLKPTGKILILDE   67 (226)
T ss_pred             CEEEECCCCCHHHHHHHHHHHCCC-----CCCCCH-----HHHHCCCCCCCCCCC--C-EEEEHHHCCCCCCCCEEEECC
T ss_conf             959407999889999999864786-----423227-----776556777877775--3-774411246788778899896


Q ss_pred             EEECCCHHHHHHH
Q ss_conf             3204713588899
Q gi|254781047|r  148 FMITNIADAIILS  160 (404)
Q Consensus       148 F~V~DiaDAmil~  160 (404)
                      ++.-+.+--.++.
T Consensus        68 ~~~~~~g~l~~~~   80 (226)
T pfam01443        68 YTLLPPGYILLLA   80 (226)
T ss_pred             CCCCCHHHHHHHH
T ss_conf             4566816899987


No 286
>pfam07693 KAP_NTPase KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.
Probab=85.89  E-value=2.8  Score=21.79  Aligned_cols=29  Identities=28%  Similarity=0.229  Sum_probs=24.0

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             68864998888877289999999985781
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      .+|--+=|+|+=|+|||.++++..+.+..
T Consensus        18 ~~~~vIgl~G~WGsGKTs~l~~~~~~L~~   46 (301)
T pfam07693        18 APGFVIGLYGAWGSGKTSFLNLLEDELKE   46 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             99979999898999999999999999861


No 287
>pfam01580 FtsK_SpoIIIE FtsK/SpoIIIE family. FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif.  It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Probab=85.79  E-value=1.2  Score=24.07  Aligned_cols=23  Identities=26%  Similarity=0.533  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf             49988888772899999999857
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALV   90 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l   90 (404)
                      -+.+-|..|.|||.++.....++
T Consensus        40 H~Lv~G~tGsGKS~~l~~li~sl   62 (202)
T pfam01580        40 HLLIAGATGSGKSTFLNTLILSL   62 (202)
T ss_pred             CEEEECCCCCCCCHHHHHHHHHH
T ss_conf             68996589998009999999999


No 288
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344   This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=85.69  E-value=0.47  Score=26.76  Aligned_cols=100  Identities=23%  Similarity=0.376  Sum_probs=55.0

Q ss_pred             EEEECCCCCCHHHHHHHHH----HHCCCC-------------HHHHHHHHHHHHH-------------------------
Q ss_conf             9988888772899999999----857811-------------1468889999999-------------------------
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFF----ALVPIE-------------KKCRLHFYEFMKD-------------------------  106 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy----~~l~~~-------------~K~R~HFh~FM~~-------------------------  106 (404)
                      .-|-||||+|||....=.-    ...+.+             .|-=.|-++=|..                         
T Consensus       245 ~li~GGPGTGKTTTv~~LL~al~~~~~~~G~~~~~I~l~APTGKAa~RL~esl~~~~~~L~~~~~aid~~~~~~~~~~~~  324 (753)
T TIGR01447       245 SLITGGPGTGKTTTVARLLLALIKQSPKQGKPRLRIALAAPTGKAAARLAESLRKAVKKLAAENMAIDEDLIAALPSEAT  324 (753)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHH
T ss_conf             89987988977899999999999989864997404788668447999999999988632234236658798548720456


Q ss_pred             -HHHHHHHHH-CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHC-C--------CEEEE
Q ss_conf             -999999971-311224665578078999999613879998423204713588899999999854-9--------68998
Q gi|254781047|r  107 -VHSRIIMYR-KKIEFGEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSH-G--------CIIVM  175 (404)
Q Consensus       107 -ih~~l~~~~-~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~-g--------v~lV~  175 (404)
                       ||+.|-... .+.... -+..|||+         .+||-+||=--   -|.-+|.+|++++-.. .        .+|+-
T Consensus       325 TiHrLLG~~~I~~~~fr-~h~~N~L~---------~DVLvvDEaSM---Vdl~lm~kL~~A~~~~~k~~KLy~~~LIllG  391 (753)
T TIGR01447       325 TIHRLLGIKPIDTKRFR-HHERNPLP---------LDVLVVDEASM---VDLPLMAKLLKALPPNTKDKKLYADRLILLG  391 (753)
T ss_pred             HHHHHHCCCCCCCCCCC-CCCCCCCC---------CCEEEECCCHH---CCHHHHHHHHHHCCCCCCCCCHHHCCCCEEC
T ss_conf             88886166147876776-77778898---------55278706002---2679999999722630013201010200122


Q ss_pred             ECCCCH
Q ss_conf             178686
Q gi|254781047|r  176 TSNFIP  181 (404)
Q Consensus       176 TSN~~P  181 (404)
                      =.|--|
T Consensus       392 D~nQL~  397 (753)
T TIGR01447       392 DKNQLP  397 (753)
T ss_pred             CCCCCC
T ss_conf             678888


No 289
>PRK10646 putative ATPase; Provisional
Probab=85.54  E-value=1  Score=24.60  Aligned_cols=88  Identities=17%  Similarity=0.218  Sum_probs=52.3

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH-CCCCEEEE
Q ss_conf             64998888877289999999985781114688899999999999999713112246655780789999996-13879998
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIA-LESRVLCF  145 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~-~~~~lLCf  145 (404)
                      .=|+|+|+.|.|||.+...+.+++.....  +                           .-|-=.+++... ....+.-+
T Consensus        29 ~vi~L~G~LGaGKTtf~r~i~~~lg~~~~--V---------------------------~SPTf~lv~~Y~~~~~~~~H~   79 (153)
T PRK10646         29 TVIYLYGDLGAGKTTFSRGFLQALGHQGN--V---------------------------KSPTYTLVEPYTLDNLMVYHF   79 (153)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCCC--C---------------------------CCCCEEEEEEECCCCCEEEEE
T ss_conf             79999888878999999999998499786--2---------------------------699764799732899338999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf             423204713588899999999854968998178686775
Q gi|254781047|r  146 DEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL  184 (404)
Q Consensus       146 DEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL  184 (404)
                      |=+-+.+..++--++ +-+.+-+.++.+|==..+.++-|
T Consensus        80 DlYRl~~~~e~~~lg-~~e~~~~~~i~lIEWpe~~~~~l  117 (153)
T PRK10646         80 DLYRLADPEELEFMG-IRDYFANDAICLVEWPQQGTGVL  117 (153)
T ss_pred             EEECCCCHHHHHHCC-CHHHHCCCCEEEEECCCCCCCCC
T ss_conf             853469988998778-78885799699998976510108


No 290
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.27  E-value=3  Score=21.60  Aligned_cols=25  Identities=32%  Similarity=0.522  Sum_probs=20.3

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             6499888887728999999998578
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      .=+=|-|+=|+|||-|+.+.---.+
T Consensus        27 e~~~iiG~SGsGKSTll~~i~gL~~   51 (235)
T cd03261          27 EILAIIGPSGSGKSTLLRLIVGLLR   51 (235)
T ss_pred             CEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             8999999999729999999975999


No 291
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.20  E-value=3.1  Score=21.58  Aligned_cols=25  Identities=32%  Similarity=0.404  Sum_probs=20.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             6499888887728999999998578
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      .=+-|-|+=|+|||-|+.+..--.+
T Consensus        31 e~~~iiGpsGsGKSTLl~~i~Gl~~   55 (220)
T cd03293          31 EFVALVGPSGCGKSTLLRIIAGLER   55 (220)
T ss_pred             CEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             8999999999579999999975999


No 292
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=84.91  E-value=0.73  Score=25.55  Aligned_cols=131  Identities=10%  Similarity=0.095  Sum_probs=71.3

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHH-------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH-
Q ss_conf             86499888887728999999998578111468-------8899999999999999713112246655780789999996-
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCR-------LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIA-  137 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R-------~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~-  137 (404)
                      +-++.+.|+.|.||+-+-..|-..+-+..+..       -.-+-+...-|-.++......  +....-|-+..+.+.+. 
T Consensus        23 ~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~~~~--~k~I~vd~IR~l~~~~~~  100 (324)
T PRK06871         23 HHALLFKADSGLGTEQLIRALAQWLMCQAPGDEQPCGQCHSCHLFQAGNHPDFHILEPID--GKDIGVDQVREINEKVSQ  100 (324)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCC--CCCCCHHHHHHHHHHHHH
T ss_conf             437876899997899999999999828999999988889899999738999879984678--887889999999999864


Q ss_pred             ----CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf             ----1387999842320471358889999999985496899817868677523874056689899999850508980473
Q gi|254781047|r  138 ----LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSG  213 (404)
Q Consensus       138 ----~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~  213 (404)
                          +..+|+.+|+.+--..+-|=-|=+.+|.==.+-+++.+|++ + +.|             ...|..+|.++++...
T Consensus       101 ~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEPp~~~~fiL~t~~-~-~~l-------------l~TI~SRCq~~~~~~p  165 (324)
T PRK06871        101 FAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADL-S-ASL-------------LATIYSRCQTWLIHVP  165 (324)
T ss_pred             CCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC-C-CCC-------------CCHHHHCCCCEECCCC
T ss_conf             622059669997588885799999999983389878389998787-0-103-------------2408626612008994


No 293
>KOG3859 consensus
Probab=84.77  E-value=0.47  Score=26.77  Aligned_cols=98  Identities=14%  Similarity=0.114  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHCCEEEECCCCCHHHH--------------CCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCC-CCCCE
Q ss_conf             68989999985050898047311221--------------1236783022035302268999999986044446-77632
Q gi|254781047|r  193 VLVSFIELLEKKLEIISLDSGQDYRR--------------KEQSILPIYMTPLNSYNRVLMDKLWAHITKGKKS-LSLNI  257 (404)
Q Consensus       193 ~FlPfI~~lk~~~~V~~l~~~~DYR~--------------~~~~~~~~y~~p~~~~~~~~l~~~f~~l~~~~~~-~~~~i  257 (404)
                      +=|-+++-|..+..|+.+-..-|--.              ...++..+|-.|.|.++-++.+........=... ....+
T Consensus       165 lDLvtmk~LdskVNIIPvIAKaDtisK~eL~~FK~kimsEL~sngv~IYqfPtDdetva~~N~~mn~~lPFAVvGSte~v  244 (406)
T KOG3859         165 LDLVTMKKLDSKVNIIPVIAKADTISKEELKRFKIKIMSELVSNGVQIYQFPTDDETVAKANSEMNHSLPFAVVGSTEEV  244 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCHHHH
T ss_conf             79999998753401578888764430999999999999999865854663465277898888876337862676523765


Q ss_pred             EEECCEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHH
Q ss_conf             76368089961220211110199985210246899999853
Q gi|254781047|r  258 STEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANR  298 (404)
Q Consensus       258 ~v~~gR~i~v~~~~~~va~f~F~eLC~~~lg~~DYi~Ia~~  298 (404)
                      .+ .+.-+..+..--|++-+..+..|       ||..+.+-
T Consensus       245 Kv-gnkmvraRqyPwG~v~vENE~HC-------DFVKLREm  277 (406)
T KOG3859         245 KV-GNKMVKARQYPWGTVQVENELHC-------DFVKLREM  277 (406)
T ss_pred             HH-HHHHHHHCCCCCCCEEECCHHHH-------HHHHHHHH
T ss_conf             43-11455530599984210113330-------89999998


No 294
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=84.70  E-value=3.2  Score=21.44  Aligned_cols=50  Identities=16%  Similarity=0.153  Sum_probs=35.6

Q ss_pred             HHHHHHHHCCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHHC-CCEEEEECCC
Q ss_conf             89999996138799984232-04713588899999999854-9689981786
Q gi|254781047|r  130 PLVASSIALESRVLCFDEFM-ITNIADAIILSRLFAALFSH-GCIIVMTSNF  179 (404)
Q Consensus       130 ~~va~~l~~~~~lLCfDEF~-V~DiaDAmil~rl~~~lf~~-gv~lV~TSN~  179 (404)
                      -.+|..|+.+-+||++||=. --|..-..-+...+..|.+. |+++|.++--
T Consensus       143 valARAL~~~P~vlllDEP~s~LD~~~r~~~~~~l~~l~~~~g~T~i~vTHd  194 (358)
T PRK11650        143 VAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLGTTSLYVTHD  194 (358)
T ss_pred             HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECC
T ss_conf             9983575049986887388776799899999999999999759779999899


No 295
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=84.69  E-value=3.2  Score=21.44  Aligned_cols=56  Identities=16%  Similarity=0.126  Sum_probs=42.6

Q ss_pred             HHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHC-CCEEEEECCCCHHHH
Q ss_conf             78999999613879998423-204713588899999999854-968998178686775
Q gi|254781047|r  129 IPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSH-GCIIVMTSNFIPENL  184 (404)
Q Consensus       129 l~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~-gv~lV~TSN~~P~dL  184 (404)
                      --.+|..|+.+-+||.+||= ---|+.-..-+-.+++.+-+. |+.+|..|-...+-+
T Consensus       136 RvaiARAL~~~P~lLllDEP~s~LD~~~~~~i~~~l~~l~~~~~~til~VTHd~~e~~  193 (352)
T PRK11144        136 RVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAQEINIPILYVSHSLDEIL  193 (352)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHH
T ss_conf             4999998724999999878400279779999999999999973988999939999999


No 296
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=84.60  E-value=2.1  Score=22.58  Aligned_cols=24  Identities=29%  Similarity=0.360  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             499888887728999999998578
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      =+=|-|+=|+|||-|+.+.-..+.
T Consensus        39 ~v~iiG~nGsGKSTL~r~l~gl~~   62 (281)
T PRK13633         39 FLVILGHNGSGKSTIAKHMNALLL   62 (281)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999999999849999999975887


No 297
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=84.60  E-value=2  Score=22.70  Aligned_cols=89  Identities=17%  Similarity=0.200  Sum_probs=61.5

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH-CCCCEEE
Q ss_conf             864998888877289999999985781114688899999999999999713112246655780789999996-1387999
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIA-LESRVLC  144 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~-~~~~lLC  144 (404)
                      ..=|||.|+.|.|||-+...+-..+-+..  .+                           +-|-=.+++... ..-+|.-
T Consensus        25 g~Vv~L~GdLGAGKTtf~rgi~~~Lg~~~--~V---------------------------~SPTFtlv~~Y~~~~~~lyH   75 (149)
T COG0802          25 GDVVLLSGDLGAGKTTLVRGIAKGLGVDG--NV---------------------------KSPTFTLVEEYEEGRLPLYH   75 (149)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCC--CC---------------------------CCCCEEEEHHHCCCCCCEEE
T ss_conf             98899977876885999999999749997--52---------------------------49876101211379987799


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf             8423204713588899999999854968998178686775
Q gi|254781047|r  145 FDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL  184 (404)
Q Consensus       145 fDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL  184 (404)
                      ||=..+.|..+.-.++ +.+.+...||.+|==+.+.++.|
T Consensus        76 ~DlYRl~d~ee~~~lg-~~e~~~~~gv~lIEW~e~~~~~l  114 (149)
T COG0802          76 FDLYRLSDPEELDELG-LDEYFDGDGICLIEWPERLAELL  114 (149)
T ss_pred             EEEECCCCHHHHHHCC-HHHHHCCCCEEEEECCCHHCCCC
T ss_conf             8611258867756669-88974778489998741121589


No 298
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149   This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=84.54  E-value=2.5  Score=22.12  Aligned_cols=28  Identities=29%  Similarity=0.478  Sum_probs=23.5

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             8864998888877289999999985781
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      +.|-|-+-||-|.|||-|-|+.-+.+..
T Consensus       138 ar~NIlv~GGTGSGKTTLaNAlla~I~~  165 (315)
T TIGR02782       138 ARKNILVVGGTGSGKTTLANALLAEIAK  165 (315)
T ss_pred             HCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             1298899814588579999999998852


No 299
>KOG0054 consensus
Probab=84.37  E-value=2.9  Score=21.73  Aligned_cols=114  Identities=14%  Similarity=0.176  Sum_probs=61.2

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCH-----------------------HHHHHHHHHHHH-HHHH----------HH
Q ss_conf             6499888887728999999998578111-----------------------468889999999-9999----------99
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIEK-----------------------KCRLHFYEFMKD-VHSR----------II  112 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~-----------------------K~R~HFh~FM~~-ih~~----------l~  112 (404)
                      +=+=+-|+||+|||=|+.+.-..++.-+                       +-.+=|-.-|-+ -.++          |.
T Consensus       548 ~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs~aYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle  627 (1381)
T KOG0054         548 QLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLE  627 (1381)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCHHHCCCHHHHHCCCCCCCHHHHHHHHHHCCCHHHHH
T ss_conf             88999899988889999999658755675599847489866655641785667500687035999999999706776797


Q ss_pred             HH-H------CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEE-ECCC-HHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             97-1------3112246655780789999996138799984232-0471-358889999999985496899817868
Q gi|254781047|r  113 MY-R------KKIEFGEILESDPIPLVASSIALESRVLCFDEFM-ITNI-ADAIILSRLFAALFSHGCIIVMTSNFI  180 (404)
Q Consensus       113 ~~-~------~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF~-V~Di-aDAmil~rl~~~lf~~gv~lV~TSN~~  180 (404)
                      .+ .      |..+..-+++--.=-..|..+=++.++-.+|--. --|. .--.|+.+.+..+.+...++..|-+-.
T Consensus       628 ~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~  704 (1381)
T KOG0054         628 ILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ  704 (1381)
T ss_pred             HCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf             46898753577886277676999999999986579989887963224077669999999987645988999847166


No 300
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=84.33  E-value=1.5  Score=23.47  Aligned_cols=44  Identities=23%  Similarity=0.265  Sum_probs=39.9

Q ss_pred             CEEEEEEEEECCCH-HHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf             79998423204713-588899999999854968998178686775
Q gi|254781047|r  141 RVLCFDEFMITNIA-DAIILSRLFAALFSHGCIIVMTSNFIPENL  184 (404)
Q Consensus       141 ~lLCfDEF~V~Dia-DAmil~rl~~~lf~~gv~lV~TSN~~P~dL  184 (404)
                      -++-|||+|..+.- ..-++.++++.+-..|+.+|.+|=+.|..+
T Consensus       340 S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~  384 (733)
T COG1203         340 SLVILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPPFL  384 (733)
T ss_pred             CCEEEECHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
T ss_conf             677874275416543089999999999968997899927899799


No 301
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=84.21  E-value=3.4  Score=21.31  Aligned_cols=19  Identities=21%  Similarity=0.256  Sum_probs=14.3

Q ss_pred             EEEECCCCCCHHHHHHHHH
Q ss_conf             9988888772899999999
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFF   87 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy   87 (404)
                      +-|+|++|+|||-|+=-+-
T Consensus        22 t~i~G~pG~GKStl~lq~a   40 (218)
T cd01394          22 TQVYGPPGTGKTNIAIQLA   40 (218)
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9998999984999999999


No 302
>COG2766 PrkA Putative Ser protein kinase [Signal transduction mechanisms]
Probab=84.07  E-value=0.44  Score=26.94  Aligned_cols=24  Identities=42%  Similarity=0.452  Sum_probs=19.6

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             688649988888772899999999
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFF   87 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy   87 (404)
                      ...++|||-|+||-|||-|.-..-
T Consensus       101 ~~kqiL~LlGPVggGKSsl~e~lk  124 (649)
T COG2766         101 ERKQILYLLGPVGGGKSSLAERLK  124 (649)
T ss_pred             HHHHHHEEECCCCCCHHHHHHHHH
T ss_conf             666553043567876678999999


No 303
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=84.07  E-value=3.3  Score=21.41  Aligned_cols=45  Identities=16%  Similarity=0.200  Sum_probs=28.3

Q ss_pred             HHHHHHHHHCCCCEEEEEEE--EECCCHHHHHHHHHHHHHHHC-CCEEEEEC
Q ss_conf             78999999613879998423--204713588899999999854-96899817
Q gi|254781047|r  129 IPLVASSIALESRVLCFDEF--MITNIADAIILSRLFAALFSH-GCIIVMTS  177 (404)
Q Consensus       129 l~~va~~l~~~~~lLCfDEF--~V~DiaDAmil~rl~~~lf~~-gv~lV~TS  177 (404)
                      --.+|..|+.+-+||.+||=  ++ |+..   +..|.+.|-+. |.+||.|-
T Consensus       171 Rv~LA~aL~~~PdlLlLDEPTn~L-D~~~---i~~L~~~L~~~~gtvivVSH  218 (556)
T PRK11819        171 RVALCRLLLSKPDMLLLDEPTNHL-DAES---VAWLEQFLHDYPGTVVAVTH  218 (556)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCC-CHHH---HHHHHHHHHHCCCCEEEEEE
T ss_conf             999999984699989984887778-9778---99999997633787799991


No 304
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=83.80  E-value=3.5  Score=21.20  Aligned_cols=108  Identities=19%  Similarity=0.318  Sum_probs=68.1

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCH-------------------HHH----HHHHHHHH--------------------
Q ss_conf             99888887728999999998578111-------------------468----88999999--------------------
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALVPIEK-------------------KCR----LHFYEFMK--------------------  105 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l~~~~-------------------K~R----~HFh~FM~--------------------  105 (404)
                      +||-|+=|-|||-||.|.|.....++                   ..|    +=|-||=+                    
T Consensus        31 ~FLtG~SGAGKttLLKLl~~~~~P~~G~v~~~G~~~~~l~~~~~P~LRR~iGvvFQDf~LL~~rTv~eNVAl~L~V~G~~  110 (215)
T TIGR02673        31 LFLTGPSGAGKTTLLKLLYGALTPSRGQVRVAGEDVSRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKK  110 (215)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCEECCCCCCCCCHHHHCCCCEEEECCCCCCCCCHHHHCCHHHHCCCCC
T ss_conf             78872778617899999985269875808888740466775643122131543784221101166134112101113888


Q ss_pred             --HHHHHHHHHHCCCCCCCCCCCCHHH---------HHHHHHHCCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHHCCCEE
Q ss_conf             --9999999971311224665578078---------9999996138799984232-047135888999999998549689
Q gi|254781047|r  106 --DVHSRIIMYRKKIEFGEILESDPIP---------LVASSIALESRVLCFDEFM-ITNIADAIILSRLFAALFSHGCII  173 (404)
Q Consensus       106 --~ih~~l~~~~~~~~~~~~~~~dpl~---------~va~~l~~~~~lLCfDEF~-V~DiaDAmil~rl~~~lf~~gv~l  173 (404)
                        +|+.+-.+.=...+........|..         .||..+..+=.||-=||== =-|.+-+-=+=+||+.+-++|+++
T Consensus       111 ~~~I~~rV~~~L~~vGL~~K~~~~P~~LSGGEQQRvaIARAiv~~P~lLLADEPTGNLD~~~~~~iL~ll~~~n~~GtTV  190 (215)
T TIGR02673       111 KREIQRRVEAALRLVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPELLLADEPTGNLDPALSERILDLLKELNKRGTTV  190 (215)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEE
T ss_conf             03367899999985286325425721004725788888765304896798778899968767899999999984189879


Q ss_pred             EEE
Q ss_conf             981
Q gi|254781047|r  174 VMT  176 (404)
Q Consensus       174 V~T  176 (404)
                      |.+
T Consensus       191 ~vA  193 (215)
T TIGR02673       191 IVA  193 (215)
T ss_pred             EEE
T ss_conf             998


No 305
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=83.65  E-value=3.6  Score=21.16  Aligned_cols=27  Identities=33%  Similarity=0.404  Sum_probs=21.9

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             864998888877289999999985781
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      -.=+-|-|+=|+|||-|+.+..-..+.
T Consensus        36 GE~v~ivG~sGsGKSTLl~~i~Gl~~p   62 (228)
T PRK10584         36 GETIALIGESGSGKSTLLAILAGLDDG   62 (228)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf             989999999985899999999669999


No 306
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=83.60  E-value=1.7  Score=23.17  Aligned_cols=27  Identities=33%  Similarity=0.650  Sum_probs=24.5

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             864998888877289999999985781
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      +-|+-|-|+.|+|||.++-.+-+.+|.
T Consensus        33 iGgVLi~G~~GtgKStlvRala~lLP~   59 (347)
T CHL00081         33 IGGVMIMGDRGTGKSTTIRALVDLLPE   59 (347)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf             786998789987499999999985787


No 307
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane.  The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=83.45  E-value=3.6  Score=21.11  Aligned_cols=24  Identities=33%  Similarity=0.528  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             499888887728999999998578
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      =+-|-|+=|+|||-|+.+..--..
T Consensus        29 ~v~i~GpSGsGKSTLl~~i~gl~~   52 (214)
T cd03292          29 FVFLVGPSGAGKSTLLKLIYKEEL   52 (214)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999997999539999999962989


No 308
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=83.37  E-value=3.7  Score=21.09  Aligned_cols=59  Identities=12%  Similarity=0.131  Sum_probs=43.0

Q ss_pred             CCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEC--CCCHHHHCC
Q ss_conf             24689999985378899818987872463899989999999822898289980--789788013
Q gi|254781047|r  287 LSANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISS--EENIEDLFP  348 (404)
Q Consensus       287 lg~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa--~~~~~~L~~  348 (404)
                      ....|-.++.++|..+=+   -.+=....|++.++-++++++++.+.+|.+.+  +--||+|-.
T Consensus       330 ~~~~dl~~i~~~f~~~~~---~~lI~TKlDEt~~~G~il~~~~~~~lplsy~t~GQ~VPeDi~~  390 (412)
T PRK05703        330 TKYRDLKDIVKHFSRLPL---DGLILTKLDETSSLGSILSLLIESGLPISYLTDGQRVPDDIKV  390 (412)
T ss_pred             CCHHHHHHHHHHHCCCCC---CEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHC
T ss_conf             998999999998467999---8799971128998629999999988796999469997243422


No 309
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=83.09  E-value=3.8  Score=21.02  Aligned_cols=98  Identities=16%  Similarity=0.174  Sum_probs=53.6

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCH-----------H-HHHHHHHH-----------HHHHHHHHHHHHCCCCCCC
Q ss_conf             86499888887728999999998578111-----------4-68889999-----------9999999999713112246
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEK-----------K-CRLHFYEF-----------MKDVHSRIIMYRKKIEFGE  122 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~-----------K-~R~HFh~F-----------M~~ih~~l~~~~~~~~~~~  122 (404)
                      .+=|.|.|+.|+|||-.+.++-..+...-           . ...-+++|           +.+..+.+....+...   
T Consensus        45 ~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP~~~~~~~~~~q~~d~~g~~~~~~~S~~~~F~eFLlr~~ky~s---  121 (490)
T pfam03215        45 QLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNPEYLHNPDNECQKPDFRGDCIVNSLSQMEQFREFLLRGARYGS---  121 (490)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC---
T ss_conf             31899879899889999999999759689981486545677502210121234576666377776788762233565---


Q ss_pred             CCCCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCC----CEEEEE
Q ss_conf             655780789999996138799984232047135888999999998549----689981
Q gi|254781047|r  123 ILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHG----CIIVMT  176 (404)
Q Consensus       123 ~~~~dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~g----v~lV~T  176 (404)
                            +.    ....+-+||.++||==.--.|..-+...+......+    +|+|+|
T Consensus       122 ------L~----~~~~~kriILIEE~Pn~~~~d~~~fr~~L~~~L~s~~~~PlV~IiS  169 (490)
T pfam03215       122 ------LQ----GGGLKKKLILVEELPNQFYSDAEKFREVIREVLQSIWHLPLIFCLT  169 (490)
T ss_pred             ------CC----CCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             ------44----5788735999965887442366999999999997089998799997


No 310
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=82.93  E-value=3.8  Score=20.98  Aligned_cols=160  Identities=14%  Similarity=0.107  Sum_probs=82.9

Q ss_pred             HCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC--CC
Q ss_conf             6138799984232047135888999999998549689981786867752387405668989999985050898047--31
Q gi|254781047|r  137 ALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS--GQ  214 (404)
Q Consensus       137 ~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~--~~  214 (404)
                      ...++|.-+||-+--+..-|=-|=+++|.==.+-++ |..|+. |+          +.+|   .|..+|..+.+.-  ..
T Consensus       137 ~g~~kV~IId~ad~mn~~aaNALLK~LEEPP~~t~f-iLit~~-~~----------~llp---TI~SRCq~~~~~~l~~~  201 (363)
T PRK07471        137 EGGWRVVIVDTADEMNANAANALLKVLEEPPARSLL-LLVSHA-PA----------RLLP---TIRSRCRKLRLRPLAPE  201 (363)
T ss_pred             CCCCEEEEEECHHHHCHHHHHHHHHHHCCCCCCEEE-EEEECC-HH----------HCHH---HHHHHCCCCCCCCCCHH
T ss_conf             489669998687873889999999972158988389-986399-77----------7779---99973524258995999


Q ss_pred             HHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCHHHHHHH-H-CCHHHH
Q ss_conf             12211236783022035302268999999986044446776327636808996122021111019998521-0-246899
Q gi|254781047|r  215 DYRRKEQSILPIYMTPLNSYNRVLMDKLWAHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDR-P-LSANDF  292 (404)
Q Consensus       215 DYR~~~~~~~~~y~~p~~~~~~~~l~~~f~~l~~~~~~~~~~i~v~~gR~i~v~~~~~~va~f~F~eLC~~-~-lg~~DY  292 (404)
                      |-...-....    .  .+..+..+. ....++.|.......+.-.          .+--++-.+..|... | +-....
T Consensus       202 ~~~~~L~~~~----~--~~~~~~~~~-~la~~a~Gs~~~Al~l~~~----------~~~~l~~~~~~ll~~~~~~d~~~~  264 (363)
T PRK07471        202 DVIAALAEAG----G--PALDDAELA-ALAALAEGSVGRALRLAGG----------DGLALYQRTTALLDTLPRLDRRAL  264 (363)
T ss_pred             HHHHHHHHHC----C--CCCCHHHHH-HHHHHCCCCHHHHHHHHCC----------CHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf             9999999843----8--999989999-9999758999999987479----------859999999999974767899999


Q ss_pred             HHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf             99985378899818987872463899989999999822898289980
Q gi|254781047|r  293 VEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISS  339 (404)
Q Consensus       293 i~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa  339 (404)
                      .++++.+.           ....+....|+.+++.+.-+..+.-...
T Consensus       265 ~~lad~~a-----------~~~~~~~~~~l~l~~~~l~~~~r~~~~~  300 (363)
T PRK07471        265 HALADAAA-----------GGDRAAFALFLDLLDRWLARLARAGARN  300 (363)
T ss_pred             HHHHHHHC-----------CCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999981-----------6877999999999999999999875227


No 311
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=82.86  E-value=3.8  Score=20.97  Aligned_cols=54  Identities=28%  Similarity=0.280  Sum_probs=45.9

Q ss_pred             HHHHHHHHHCCCCEEEEEE-EEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf             7899999961387999842-32047135888999999998549689981786867
Q gi|254781047|r  129 IPLVASSIALESRVLCFDE-FMITNIADAIILSRLFAALFSHGCIIVMTSNFIPE  182 (404)
Q Consensus       129 l~~va~~l~~~~~lLCfDE-F~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~  182 (404)
                      .-.+|..++.+.++|-+|| +---|+..+.-+-+++..|-++|+.+|..|.+..+
T Consensus       149 rv~iA~aL~~~p~lliLDEPt~~Ld~~~~~~l~~~l~~l~~~g~til~isH~l~~  203 (501)
T PRK10762        149 MVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRMKE  203 (501)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHH
T ss_conf             9999999845998775358755788788899999887877448414775142576


No 312
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=82.79  E-value=3.9  Score=20.94  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=17.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHC
Q ss_conf             9988888772899999999857
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALV   90 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l   90 (404)
                      |-+=|.+|+|||-|...+-+.+
T Consensus         2 I~IEGnIG~GKTTl~~~La~~l   23 (219)
T cd02030           2 ITVDGNIASGKGKLAKELAEKL   23 (219)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
T ss_conf             8996785679999999999985


No 313
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=82.75  E-value=2.1  Score=22.66  Aligned_cols=31  Identities=19%  Similarity=0.229  Sum_probs=26.0

Q ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             6666886499888887728999999998578
Q gi|254781047|r   61 RKYCSMQGIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        61 ~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      ++...|+-+.|=|++|.|||.+...+...+.
T Consensus         7 ~~~~~Pkai~laG~pGAGKS~~~~~~~~~~~   37 (191)
T pfam06414         7 PPQERPVAVLLGGQPGAGKTELARALLEELG   37 (191)
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             9876987999957998888999999987537


No 314
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=82.65  E-value=0.67  Score=25.77  Aligned_cols=24  Identities=29%  Similarity=0.394  Sum_probs=18.9

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf             668864998888877289999999
Q gi|254781047|r   63 YCSMQGIYLHGDVGQGKSMLMNLF   86 (404)
Q Consensus        63 ~~~~kGlYL~G~VG~GKT~LMdlF   86 (404)
                      .+..||+..-|++|.||||||.--
T Consensus      1491 lnt~R~~i~cGppGSgK~mlM~~s 1514 (3164)
T COG5245        1491 LNTLRSYIYCGPPGSGKEMLMCPS 1514 (3164)
T ss_pred             HHCCCEEEEECCCCCCCCHHCCHH
T ss_conf             740634999789997510112636


No 315
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815   Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases .   Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=82.47  E-value=0.61  Score=26.02  Aligned_cols=134  Identities=21%  Similarity=0.238  Sum_probs=68.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH----HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf             499888887728999999998578111468889999----9999999999713112246655780789999996138799
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEF----MKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL  143 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~F----M~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL  143 (404)
                      =|=++||+|+|||=|=..--.++.-  |    |-.|    |.++ +++.-.|.+-=+.-++   -|-+--++-..+-.|+
T Consensus       452 IlClvGPPGVGKTSlg~SIA~ALnR--k----FvR~SlGG~~De-AEIrGHRRTYvGAMPG---riiQ~lk~~~t~NPl~  521 (941)
T TIGR00763       452 ILCLVGPPGVGKTSLGKSIAKALNR--K----FVRFSLGGVRDE-AEIRGHRRTYVGAMPG---RIIQGLKKAKTKNPLI  521 (941)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC--E----EEEEEECCCEEH-HHCCCCCCCCCCCCHH---HHHHHHHHCCCCCCEE
T ss_conf             7872072695422278999999688--0----499952672203-1127864320346725---7899987604158806


Q ss_pred             EEEEEEE--------CCCHHHHHH-------HHHHHHHHH-----CCCE--EEEECCCC---HHHHHCCCCCHHHHHHHH
Q ss_conf             9842320--------471358889-------999999985-----4968--99817868---677523874056689899
Q gi|254781047|r  144 CFDEFMI--------TNIADAIIL-------SRLFAALFS-----HGCI--IVMTSNFI---PENLYKDEINRNVLVSFI  198 (404)
Q Consensus       144 CfDEF~V--------~DiaDAmil-------~rl~~~lf~-----~gv~--lV~TSN~~---P~dLY~~GLqR~~FlPfI  198 (404)
                      .+||.-=        -|+|.|.|=       .+|..++.+     -.|.  .|||+|+.   |.=               
T Consensus       522 LlDEIDK~~~~~~~~GDPaSALLEvLDPEQN~~F~DHYldvp~DLS~V~CyFi~TAN~~d~IP~P---------------  586 (941)
T TIGR00763       522 LLDEIDKIGLKSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVLCYFIATANSIDTIPRP---------------  586 (941)
T ss_pred             EEEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCCCCCCCCCCHHHHHHHEEECCCCCCCCCCC---------------
T ss_conf             86202200167886556378886412864360425530023400420021000244757677722---------------


Q ss_pred             HHHHHCCEEEECCCCCHHHHCCCCCCCEEEEC
Q ss_conf             99985050898047311221123678302203
Q gi|254781047|r  199 ELLEKKLEIISLDSGQDYRRKEQSILPIYMTP  230 (404)
Q Consensus       199 ~~lk~~~~V~~l~~~~DYR~~~~~~~~~y~~p  230 (404)
                        |.+||+|++|.|-+.==+  +.-+..|+.|
T Consensus       587 --LLDRMEvI~lsGY~~~EK--~~IA~~yLiP  614 (941)
T TIGR00763       587 --LLDRMEVIELSGYTEEEK--LEIAKKYLIP  614 (941)
T ss_pred             --CCCCEEEEECCCCCHHHH--HHHHHHCCHH
T ss_conf             --137402452388876789--9999854713


No 316
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=82.10  E-value=1.3  Score=23.95  Aligned_cols=26  Identities=35%  Similarity=0.358  Sum_probs=22.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf             49988888772899999999857811
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIE   93 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~   93 (404)
                      -+.++|+.|+|||-||..|.......
T Consensus         7 kivv~G~~g~GKTtl~~~l~~~~~~~   32 (219)
T COG1100           7 KIVVLGDGGVGKTTLLNRLVGDEFPE   32 (219)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf             99999999998899999996476765


No 317
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155   This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase  and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=82.07  E-value=1.6  Score=23.44  Aligned_cols=33  Identities=21%  Similarity=0.483  Sum_probs=27.7

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCH
Q ss_conf             666886499888887728999999998578111
Q gi|254781047|r   62 KYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEK   94 (404)
Q Consensus        62 ~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~   94 (404)
                      +-...|-|=|-||-|.|||-+|++.-+.+|..+
T Consensus       154 Ai~~~knIii~GGTgSGKTTf~kal~~~IP~~E  186 (328)
T TIGR02788       154 AIASRKNIIISGGTGSGKTTFLKALVKEIPKDE  186 (328)
T ss_pred             HHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCC
T ss_conf             987389199990689718999999973276225


No 318
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381   Members of this family function in ethanolamine  and propanediol  degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively.  The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems.  Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=82.03  E-value=0.54  Score=26.38  Aligned_cols=19  Identities=37%  Similarity=0.550  Sum_probs=14.7

Q ss_pred             EEEECCCCCCHHHHHHHHH
Q ss_conf             9988888772899999999
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFF   87 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy   87 (404)
                      +-+=|+||||||-|.+.+-
T Consensus         3 ~~f~G~~gCGKTTL~q~L~   21 (144)
T TIGR02528         3 IMFIGSVGCGKTTLTQALQ   21 (144)
T ss_pred             EEEEECCCCCHHHHHHHCC
T ss_conf             7887158887443543116


No 319
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=81.96  E-value=4.1  Score=20.75  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=15.9

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf             86499888887728999999998
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFA   88 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~   88 (404)
                      -.-+=|-|.-|+|||-|..+.-.
T Consensus       364 GEkvAIlG~SGsGKSTllqLl~~  386 (573)
T COG4987         364 GEKVAILGRSGSGKSTLLQLLAG  386 (573)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
T ss_conf             87688877999878999999972


No 320
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function.  Barmotin belongs to the SMC protein family.  SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains.  Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins.  The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases.  The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=81.88  E-value=4.2  Score=20.73  Aligned_cols=22  Identities=27%  Similarity=0.452  Sum_probs=17.1

Q ss_pred             CCEE-EEECCCCCCHHHHHHHHH
Q ss_conf             8649-988888772899999999
Q gi|254781047|r   66 MQGI-YLHGDVGQGKSMLMNLFF   87 (404)
Q Consensus        66 ~kGl-YL~G~VG~GKT~LMdlFy   87 (404)
                      |.|+ =|-|+=|+|||-|+++.-
T Consensus        21 p~GitaIvGpsGsGKSTLl~~i~   43 (197)
T cd03278          21 PPGLTAIVGPNGSGKSNIIDAIR   43 (197)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHH
T ss_conf             89828999999998899999999


No 321
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=81.83  E-value=4.2  Score=20.72  Aligned_cols=46  Identities=24%  Similarity=0.242  Sum_probs=31.5

Q ss_pred             HHHHHHHCCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             9999996138799984232-047135888999999998549689981
Q gi|254781047|r  131 LVASSIALESRVLCFDEFM-ITNIADAIILSRLFAALFSHGCIIVMT  176 (404)
Q Consensus       131 ~va~~l~~~~~lLCfDEF~-V~DiaDAmil~rl~~~lf~~gv~lV~T  176 (404)
                      .||..+..+-.||.=||=- =-|+.-|-=+=+||+.+-..|+++++.
T Consensus       147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~A  193 (223)
T COG2884         147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMA  193 (223)
T ss_pred             HHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             99999816987686048878888588999999999986448579997


No 322
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=81.82  E-value=4.2  Score=20.71  Aligned_cols=114  Identities=19%  Similarity=0.236  Sum_probs=59.8

Q ss_pred             CEEEEECCCCCCHHHHHHHH-HHHCCCCH--------HHHHHHHHHHHHHHHHHHHH--HCCCCCC--------CCCCCC
Q ss_conf             64998888877289999999-98578111--------46888999999999999997--1311224--------665578
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLF-FALVPIEK--------KCRLHFYEFMKDVHSRIIMY--RKKIEFG--------EILESD  127 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlF-y~~l~~~~--------K~R~HFh~FM~~ih~~l~~~--~~~~~~~--------~~~~~d  127 (404)
                      .=+-+-|++|+|||.+..-| |..+....        --.-.|-+.|..+.-.+..+  .++...-        ....++
T Consensus        25 s~~li~G~~GtGKsi~~~~~~~~~l~~g~~~~yis~e~t~~~~i~qm~s~g~di~~~~~~G~l~~i~~~~~~~~~~~~~~  104 (230)
T PRK08533         25 SIILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSSQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEKRD  104 (230)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCHHHHHCCCEEEEECCCCCCCHHHHHH
T ss_conf             48999868998789999999999987898699999438999999999986998179975796799961343354045789


Q ss_pred             HHHHHHHH-HHCCCCEEEEEEEE-E--CCCHHHHH--HHHHHHHHHHCCCEEEEECCCC
Q ss_conf             07899999-96138799984232-0--47135888--9999999985496899817868
Q gi|254781047|r  128 PIPLVASS-IALESRVLCFDEFM-I--TNIADAII--LSRLFAALFSHGCIIVMTSNFI  180 (404)
Q Consensus       128 pl~~va~~-l~~~~~lLCfDEF~-V--~DiaDAmi--l~rl~~~lf~~gv~lV~TSN~~  180 (404)
                      -|..+... -..+.+++-+|=|- +  .|.-.+++  +-..|+.+-..|-+++.|.+..
T Consensus       105 ~L~~ll~~~~~~~~dvIIIDSlS~l~~~~~~~~~~~~~~~~lk~l~s~gktIilTv~p~  163 (230)
T PRK08533        105 FLDKLMNTRRFYEKDVVIIDSLSSLVSRDASEVQIRDLMAFFKRISSLNKVIILTANPK  163 (230)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             99999732664379899990531885167778999999999999985898899995633


No 323
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=81.80  E-value=1.4  Score=23.69  Aligned_cols=130  Identities=13%  Similarity=0.161  Sum_probs=65.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCC--------------HHHHHHHH--HHHHHHHHHHHHHHCCCC-CCCCCCCC--HH
Q ss_conf             9988888772899999999857811--------------14688899--999999999999713112-24665578--07
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALVPIE--------------KKCRLHFY--EFMKDVHSRIIMYRKKIE-FGEILESD--PI  129 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l~~~--------------~K~R~HFh--~FM~~ih~~l~~~~~~~~-~~~~~~~d--pl  129 (404)
                      +.|-|++|+|||-|+.-..+.+...              ..+|+=|-  ++...-...|........ ......-|  -+
T Consensus         2 i~ITG~pGvGKTTli~kv~~~l~~~~~~v~GF~T~evre~g~R~GF~iv~l~~g~~~~la~~~~~~~~~vGky~v~~~~f   81 (168)
T pfam03266         2 IFITGPPGVGKTTLVKKVIELLKSEGVKVGGFYTPEVREGGRRIGFDIVDLASGERGPLARVGGVSGPRVGKYVVNLEEF   81 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCEECCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCEECHHHH
T ss_conf             89978999889999999999998679707489930212589378999999047826774440688775457716668999


Q ss_pred             HHHHHHHH----CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHC-
Q ss_conf             89999996----1387999842320471358889999999985496899817868677523874056689899999850-
Q gi|254781047|r  130 PLVASSIA----LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKK-  204 (404)
Q Consensus       130 ~~va~~l~----~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~-  204 (404)
                      +.+|-...    .+++|+.+||.==--.. +--+.+....+++.+..+++|=.++            .-.||++.|+++ 
T Consensus        82 e~~~~~~L~~a~~~~dlivIDEIG~mEl~-s~~F~~~v~~~l~~~~~vl~ti~~~------------~~~~~v~~i~~~~  148 (168)
T pfam03266        82 EEIALPALRRALEEADLIIIDEIGPMELK-SPKFREAIEEVLSSNKPVLAVVHRR------------SDSPLVERIRRRP  148 (168)
T ss_pred             HHHHHHHHHHCCCCCCEEEEECCCHHHHH-HHHHHHHHHHHHCCCCCEEEEEEEC------------CCCHHHHHHHCCC
T ss_conf             99999999840668989999763145331-4999999999966999799999725------------8983899974179


Q ss_pred             -CEEEECC
Q ss_conf             -5089804
Q gi|254781047|r  205 -LEIISLD  211 (404)
Q Consensus       205 -~~V~~l~  211 (404)
                       +.++++.
T Consensus       149 d~~i~~vt  156 (168)
T pfam03266       149 DVKIFVVT  156 (168)
T ss_pred             CCEEEEEC
T ss_conf             93899978


No 324
>KOG3889 consensus
Probab=81.63  E-value=3.5  Score=21.17  Aligned_cols=159  Identities=21%  Similarity=0.242  Sum_probs=78.7

Q ss_pred             CCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf             78078999999613879998423204713588899999999854968998178686775238740566898999998505
Q gi|254781047|r  126 SDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKL  205 (404)
Q Consensus       126 ~dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~  205 (404)
                      .+|...--..+..+.+.+-||==++.-  ...=|..+.+.|...||++|-  |.+|--=-- -+--++-.|-.+.+--.|
T Consensus        96 ~~~~~lWNs~i~q~erhlrfd~p~~~~--s~~~l~sf~~nlv~YGi~fvd--~V~pT~e~T-Ekl~~r~~pv~~TffG~m  170 (371)
T KOG3889          96 NKIYELWNSSISQKERHLRFDVPRISK--STLSLQSFSKNLVKYGIIFVD--GVEPTSEAT-EKLCQRLVPVHDTFFGQM  170 (371)
T ss_pred             CCCCCCHHHHHHHHCCCCCCCCHHHHH--CCHHHHHHHHHHHHEEEEEEC--CCCCHHHHH-HHHHHHHHHHHHHHHHEE
T ss_conf             663001236777531366777325532--557899999988862179975--888526899-999987657887450225


Q ss_pred             EEEECC---CCCHHHHCCCC--CCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEECCC-----CCCCC
Q ss_conf             089804---73112211236--783022035302268999999986044446776327636808996122-----02111
Q gi|254781047|r  206 EIISLD---SGQDYRRKEQS--ILPIYMTPLNSYNRVLMDKLWAHITKGKKSLSLNISTEGGYEIHVPFF-----CSRVS  275 (404)
Q Consensus       206 ~V~~l~---~~~DYR~~~~~--~~~~y~~p~~~~~~~~l~~~f~~l~~~~~~~~~~i~v~~gR~i~v~~~-----~~~va  275 (404)
                      =++.=+   +++-|-+..+.  -.++||...-  .-    +.|.-++.         .-.+|+++-+...     -.+-+
T Consensus       171 W~Fsd~p~~~DTAYtkl~lg~HTD~TYF~~~~--Gi----QvfHCl~h---------~gtGG~t~lVDgfy~ae~l~~~~  235 (371)
T KOG3889         171 WVFSDEPAYEDTAYTKLELGPHTDGTYFDQTP--GI----QVFHCLTH---------AGTGGDTVLVDGFYCAEKLRNES  235 (371)
T ss_pred             EEECCCCCCCCCCCEEEEECCCCCCCEECCCC--CC----EEEEEECC---------CCCCCCEEEEEHHHHHHHHHHHC
T ss_conf             78527876454200001104668886623687--72----68984123---------68788438982278899997638


Q ss_pred             CCCHHHHHHHHCCHHHHHHHHH--HCCEEEEC
Q ss_conf             1019998521024689999985--37889981
Q gi|254781047|r  276 RFSFFDLCDRPLSANDFVEIAN--RFDVVIIN  305 (404)
Q Consensus       276 ~f~F~eLC~~~lg~~DYi~Ia~--~f~ti~I~  305 (404)
                      --+|+-||..+.+ ..||+=+.  ++|++-|+
T Consensus       236 Pe~feiLc~v~i~-heYiE~~ge~h~H~v~~~  266 (371)
T KOG3889         236 PEDFEILCNVKIS-HEYIEGSGESHIHSVSLE  266 (371)
T ss_pred             HHHHHHHHCCCCC-HHHHCCCCCCCCEEECCC
T ss_conf             3766686468666-053137886431020467


No 325
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=81.28  E-value=2.6  Score=22.05  Aligned_cols=45  Identities=13%  Similarity=0.321  Sum_probs=34.2

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             86499888887728999999998578111468889999999999999
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRII  112 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~  112 (404)
                      ++=+-+-|=+|+|||-+++..-.-+ ...| -+-|-++|.++..+..
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~~~-ivNyG~~Mle~A~k~g   48 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKEL-VKHK-IVNYGDLMLEIAKKKG   48 (189)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH-HHCE-EEEHHHHHHHHHHHHC
T ss_conf             5599997579887266999999877-5220-0007699999999838


No 326
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=81.10  E-value=3.7  Score=21.08  Aligned_cols=27  Identities=19%  Similarity=0.255  Sum_probs=21.9

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             886499888887728999999998578
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      .-|++.|-|++|+|||-|-=..-+.+-
T Consensus        49 aGraiLlaGppGTGKTAlA~aiakeLG   75 (395)
T pfam06068        49 AGRAVLIAGPPGTGKTALAIAISKELG   75 (395)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             773899877999888999999999748


No 327
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=81.09  E-value=4.4  Score=20.55  Aligned_cols=53  Identities=13%  Similarity=0.223  Sum_probs=43.2

Q ss_pred             HHHHHHHHHCCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf             789999996138799984232-047135888999999998549689981786867
Q gi|254781047|r  129 IPLVASSIALESRVLCFDEFM-ITNIADAIILSRLFAALFSHGCIIVMTSNFIPE  182 (404)
Q Consensus       129 l~~va~~l~~~~~lLCfDEF~-V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~  182 (404)
                      -..+|..++.+-++|++||=- =-|+.-..-+..++..+ .++.+++.||-...+
T Consensus       141 rl~la~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l-~~~~TillssH~l~e  194 (301)
T TIGR03522       141 RVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNI-GKDKTIILSTHIMQE  194 (301)
T ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCHHH
T ss_conf             599889870799899994886678989999999999987-599999998785899


No 328
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.60  E-value=4.6  Score=20.45  Aligned_cols=24  Identities=25%  Similarity=0.384  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             499888887728999999998578
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      =+-|-|+-|+|||-|+.+...-.+
T Consensus        37 ~vaiiG~sGsGKSTLl~ll~Gl~~   60 (269)
T PRK13648         37 WTSIVGHNGSGKSTIAKLMIGIEK   60 (269)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             999999999979999999964979


No 329
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=80.43  E-value=4.7  Score=20.41  Aligned_cols=115  Identities=20%  Similarity=0.250  Sum_probs=60.9

Q ss_pred             CCCE--EEEECCCCCCHHHHHHHHHHHCCCCH----------------HHH-----------------------------
Q ss_conf             8864--99888887728999999998578111----------------468-----------------------------
Q gi|254781047|r   65 SMQG--IYLHGDVGQGKSMLMNLFFALVPIEK----------------KCR-----------------------------   97 (404)
Q Consensus        65 ~~kG--lYL~G~VG~GKT~LMdlFy~~l~~~~----------------K~R-----------------------------   97 (404)
                      -+.|  +=|-|.-|+|||-|+.++-.-.+...                ..|                             
T Consensus       496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~  575 (709)
T COG2274         496 IPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEAT  575 (709)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHEEEECCCCHHHCCCHHHHHHCCCCCCC
T ss_conf             67998899987999988999999836788888559999872786699999865468746653204739879746899999


Q ss_pred             ---HHHHHHHHHHHHHHHHHHC-------CCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEE--EECCCHHHHHHHHHHHH
Q ss_conf             ---8899999999999999713-------11224665578078999999613879998423--20471358889999999
Q gi|254781047|r   98 ---LHFYEFMKDVHSRIIMYRK-------KIEFGEILESDPIPLVASSIALESRVLCFDEF--MITNIADAIILSRLFAA  165 (404)
Q Consensus        98 ---~HFh~FM~~ih~~l~~~~~-------~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF--~V~DiaDAmil~rl~~~  165 (404)
                         +-=--.|..+|+.+.++-.       ..+..-++.--=...+|..+..+-++|-+||=  .++..+.+-|+..|-+.
T Consensus       576 ~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~  655 (709)
T COG2274         576 DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI  655 (709)
T ss_pred             HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf             79999999983768999836054562320489888888999999999854699989970742236986799999999998


Q ss_pred             HHHCCCEEEEECCCCH
Q ss_conf             9854968998178686
Q gi|254781047|r  166 LFSHGCIIVMTSNFIP  181 (404)
Q Consensus       166 lf~~gv~lV~TSN~~P  181 (404)
                      .  .|.++|.-+-|++
T Consensus       656 ~--~~~T~I~IaHRl~  669 (709)
T COG2274         656 L--QGRTVIIIAHRLS  669 (709)
T ss_pred             H--CCCEEEEEECCCH
T ss_conf             4--5886999976616


No 330
>PRK13695 putative NTPase; Provisional
Probab=80.39  E-value=1.8  Score=23.08  Aligned_cols=24  Identities=29%  Similarity=0.340  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             499888887728999999998578
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      =+.|-|.+|+|||-|+.-..+.+.
T Consensus         5 kI~iTG~PGvGKTTli~Kv~~~L~   28 (174)
T PRK13695          5 RIGITGMPGVGKTTLVLKIAELLA   28 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             999878999889999999999986


No 331
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=80.33  E-value=4.7  Score=20.39  Aligned_cols=65  Identities=20%  Similarity=0.286  Sum_probs=45.7

Q ss_pred             HHHHHHHCCCCEEEEEEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEE
Q ss_conf             99999961387999842320-47135888999999998549689981786867752387405668989999985050898
Q gi|254781047|r  131 LVASSIALESRVLCFDEFMI-TNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIIS  209 (404)
Q Consensus       131 ~va~~l~~~~~lLCfDEF~V-~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~  209 (404)
                      .+|+.+.++..++.|||=-- -|+-.+-|+...+..+++..+++++|-- .                  ..+++-=.|+-
T Consensus       466 aLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHr-l------------------~~~~~~D~I~v  526 (559)
T COG4988         466 ALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHR-L------------------EDAADADRIVV  526 (559)
T ss_pred             HHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECC-H------------------HHHHCCCEEEE
T ss_conf             9999855888889854875679876799999999999727869999767-3------------------77854998999


Q ss_pred             CCCCC
Q ss_conf             04731
Q gi|254781047|r  210 LDSGQ  214 (404)
Q Consensus       210 l~~~~  214 (404)
                      ||.|+
T Consensus       527 ld~G~  531 (559)
T COG4988         527 LDNGR  531 (559)
T ss_pred             ECCCC
T ss_conf             64883


No 332
>PRK06851 hypothetical protein; Provisional
Probab=80.17  E-value=1.3  Score=23.94  Aligned_cols=42  Identities=24%  Similarity=0.216  Sum_probs=25.2

Q ss_pred             CCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf             3332256643102466666688649988888772899999999857
Q gi|254781047|r   45 QEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLFFALV   90 (404)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l   90 (404)
                      ...|+.|.+-....    ...-|=+.|=||+|+|||-||.-.-+..
T Consensus        14 T~~GF~S~~~~i~~----~~~~ri~ilKGGpGtGKStlmK~ig~~~   55 (368)
T PRK06851         14 TARGFYSLYDSILP----GDANRIFILKGGPGTGKSTLMKKIGEEF   55 (368)
T ss_pred             CCCCHHHHHHHHCC----CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             77427888875425----6512799996899977899999999999


No 333
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=79.86  E-value=3.8  Score=21.00  Aligned_cols=25  Identities=28%  Similarity=0.311  Sum_probs=19.7

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf             6886499888887728999999998
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFA   88 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~   88 (404)
                      ++.+=+.|-|+||=|||.|+.-..+
T Consensus        30 ~~~~lIfLCGSvGDGKShILs~~k~   54 (504)
T TIGR03238        30 PSSSLLFLCGSSGDGKSEILAENKR   54 (504)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf             9774899965888868999999889


No 334
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=79.70  E-value=2.6  Score=22.07  Aligned_cols=18  Identities=28%  Similarity=0.442  Sum_probs=13.9

Q ss_pred             EEEECCCCCCHHHHHHHH
Q ss_conf             998888877289999999
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLF   86 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlF   86 (404)
                      +++-||++.|||-.---.
T Consensus         4 ~LVtGG~rSGKS~~AE~l   21 (170)
T PRK05800          4 ILVTGGARSGKSRFAERL   21 (170)
T ss_pred             EEEECCCCCCHHHHHHHH
T ss_conf             999798763489999999


No 335
>KOG0990 consensus
Probab=79.69  E-value=2  Score=22.69  Aligned_cols=90  Identities=19%  Similarity=0.146  Sum_probs=51.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH-----------
Q ss_conf             499888887728999999998578111468889999999999999971311224665578078999999-----------
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI-----------  136 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l-----------  136 (404)
                      -+|.||++|.|||=-|...-..+..+++-+     -|.   .+|+.          ..++++..|...+           
T Consensus        64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~-----~m~---lelna----------Sd~rgid~vr~qi~~fast~~~~~  125 (360)
T KOG0990          64 HLLFYGPPGTGKTSTILANARDFYSPHPTT-----SML---LELNA----------SDDRGIDPVRQQIHLFASTQQPTT  125 (360)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHCCCCCCH-----HHH---HHHHC----------CCCCCCCCHHHHHHHHHHHCCCEE
T ss_conf             534348998899873666566505899824-----699---98643----------676688614788898776416400


Q ss_pred             ---HCCCCEEEEEEEEECCCHHHHH------HHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf             ---6138799984232047135888------999999998549689981786867
Q gi|254781047|r  137 ---ALESRVLCFDEFMITNIADAII------LSRLFAALFSHGCIIVMTSNFIPE  182 (404)
Q Consensus       137 ---~~~~~lLCfDEF~V~DiaDAmi------l~rl~~~lf~~gv~lV~TSN~~P~  182 (404)
                         ....+++-+||      ||||-      |.|..+.+ ..+..+.+-+|.+-.
T Consensus       126 fst~~~fKlvILDE------ADaMT~~AQnALRRviek~-t~n~rF~ii~n~~~k  173 (360)
T KOG0990         126 YSTHAAFKLVILDE------ADAMTRDAQNALRRVIEKY-TANTRFATISNPPQK  173 (360)
T ss_pred             CCCCCCEEEEEECC------HHHHHHHHHHHHHHHHHHH-CCCEEEEEECCCHHH
T ss_conf             02467615887334------1376698999999999871-332379986167644


No 336
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=79.64  E-value=5  Score=20.25  Aligned_cols=25  Identities=28%  Similarity=0.406  Sum_probs=21.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             4998888877289999999985781
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      =+=|-|+-|.|||-|+.+..-.++.
T Consensus        34 i~~iiG~nGaGKSTLl~~i~G~~~p   58 (258)
T PRK11701         34 VLGIVGESGSGKTTLLNALSARLAP   58 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf             9999888998899999998567888


No 337
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=79.42  E-value=2.3  Score=22.42  Aligned_cols=28  Identities=21%  Similarity=0.451  Sum_probs=22.9

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf             8649988888772899999999857811
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIE   93 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~   93 (404)
                      .+-+-+-|+-|.|||-+|+.+-+.+|..
T Consensus       162 r~NIlIsGgTGSGKTTllnALl~~IP~~  189 (343)
T PRK13851        162 RLTMLLCGPTGSGKTTMSKTLISAIPPQ  189 (343)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf             9889998889861999999999628965


No 338
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=79.42  E-value=5  Score=20.21  Aligned_cols=131  Identities=12%  Similarity=0.168  Sum_probs=68.5

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCHHHH-------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHC---
Q ss_conf             99888887728999999998578111468-------88999999999999997131122466557807899999961---
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALVPIEKKCR-------LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIAL---  138 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l~~~~K~R-------~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~---  138 (404)
                      -||.-| |.||+-+.-.|-..+-+..+.-       -.-..++..-|-.++.....   +.....|-+..+.+.+..   
T Consensus        26 AyLf~G-~~Gk~~~A~~~A~~l~C~~~~~~~pCg~C~~C~~i~~~~hpDv~~i~~~---~~~I~vd~IR~l~~~~~~~~~  101 (290)
T PRK07276         26 AYLFSG-DFASFEMALFLAQSLFCEQKEDVLPCGHCRSCRLIEQGDFSDVTVIEPQ---GQVIKTDTIRELTANFSQSGY  101 (290)
T ss_pred             EEECCC-CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCEEECCC---CCCCCHHHHHHHHHHHHHCCC
T ss_conf             542169-8687999999999981899999898988999999876999871377167---775768899999999844561


Q ss_pred             --CCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHH
Q ss_conf             --387999842320471358889999999985496899817868677523874056689899999850508980473112
Q gi|254781047|r  139 --ESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDY  216 (404)
Q Consensus       139 --~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DY  216 (404)
                        ..+|.-+|+.+--....|=-|=++++.=-..-+++..|+|.  +          +.+|   .|..+|.++++....|+
T Consensus       102 ~g~~KV~II~~Ad~mt~~AaNaLLK~LEEPp~~t~~iLlt~~~--~----------~lLp---TI~SRCQ~i~fp~~~~~  166 (290)
T PRK07276        102 EGKRQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDE--N----------KVLP---TIKSRTQIFHFPKNEAY  166 (290)
T ss_pred             CCCEEEEEECCHHHCCHHHHHHHHHHHCCCCCCCEEEEEECCH--H----------HCCH---HHHHCCCCCCCCCCHHH
T ss_conf             3782799977656529999999999703898883799887992--5----------4937---88736601028996799


Q ss_pred             HH
Q ss_conf             21
Q gi|254781047|r  217 RR  218 (404)
Q Consensus       217 R~  218 (404)
                      -.
T Consensus       167 l~  168 (290)
T PRK07276        167 LY  168 (290)
T ss_pred             HH
T ss_conf             99


No 339
>PRK13909 putative recombination protein RecB; Provisional
Probab=79.31  E-value=5.1  Score=20.19  Aligned_cols=41  Identities=20%  Similarity=0.152  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             07899999961387999842320471358889999999985
Q gi|254781047|r  128 PIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFS  168 (404)
Q Consensus       128 pl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~  168 (404)
                      +-+.+...+-..++-+.+||||=||..=.-|+..|+..+..
T Consensus       314 ~~~~l~~rl~~~~~~ilVDEFQDTn~~Q~~il~~L~~~~~~  354 (911)
T PRK13909        314 DKDFLYFRLDSKISHILIDEFQDTSLLQYKILLPLIDEIKS  354 (911)
T ss_pred             CHHHHHHHHHCCCCEEEEEHHCCCCHHHHHHHHHHHHHHHC
T ss_conf             26899999860576899640024899999999999987623


No 340
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939    This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=79.24  E-value=0.91  Score=24.92  Aligned_cols=11  Identities=36%  Similarity=0.625  Sum_probs=6.3

Q ss_pred             EECCCCCCHHH
Q ss_conf             88888772899
Q gi|254781047|r   71 LHGDVGQGKSM   81 (404)
Q Consensus        71 L~G~VG~GKT~   81 (404)
                      |||++|.|||=
T Consensus        17 iYGp~G~GKTn   27 (223)
T TIGR02237        17 IYGPPGSGKTN   27 (223)
T ss_pred             EECCCCCCHHH
T ss_conf             87589986789


No 341
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=79.13  E-value=4.8  Score=20.35  Aligned_cols=88  Identities=17%  Similarity=0.181  Sum_probs=47.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHH
Q ss_conf             77898999999999999999861354333225664310246666668864998888877289999999985781114688
Q gi|254781047|r   19 LKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRL   98 (404)
Q Consensus        19 i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~   98 (404)
                      ++.-+.|.++++++.+                              ..+ ..++.+.|.|||++|-..-..+... .+|+
T Consensus         2 ~~LR~yQ~~a~~~~~~------------------------------~~~-~~i~~pTGsGKT~~~~~~i~~~~~~-~~~~   49 (103)
T pfam04851         2 LELRPYQIEAIRNLLE------------------------------KKR-GLIVMATGSGKTLTAAKLIARLLKG-KKKV   49 (103)
T ss_pred             CCCCHHHHHHHHHHHH------------------------------CCC-EEEEECCCCCHHHHHHHHHHHHHHC-CCCE
T ss_conf             9872999999999996------------------------------398-6999589998799999999999846-9929


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf             89999999999999971311224665578078999999613879998423204713588899999999
Q gi|254781047|r   99 HFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAAL  166 (404)
Q Consensus        99 HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~l  166 (404)
                      =|                         -=|-..++++..++. ++.+||-|-.- |+.+ ..++++.+
T Consensus        50 lv-------------------------lvp~~~L~~Q~~~~~-lii~DE~H~~~-a~~~-~~~l~~~~   89 (103)
T pfam04851        50 LF-------------------------LVPRKDLLEQALEEF-VIIIDEAHHSS-AKTK-YRKILEYF   89 (103)
T ss_pred             EE-------------------------EECCHHHHHHHHHHH-HHHHHHHHHCC-CHHH-HHHHHHHC
T ss_conf             99-------------------------908299999999965-64601635235-3789-99999957


No 342
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=79.04  E-value=5.2  Score=20.13  Aligned_cols=29  Identities=24%  Similarity=0.462  Sum_probs=24.2

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf             88649988888772899999999857811
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIE   93 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~   93 (404)
                      .+.-+-|-|+-|+|||+|....-..+..+
T Consensus       108 ~KsNILliGPTG~GKTlla~tLAk~l~vP  136 (411)
T PRK05342        108 QKSNILLIGPTGSGKTLLAQTLARILNVP  136 (411)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             34538998999977889999999986999


No 343
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=78.92  E-value=2.6  Score=22.05  Aligned_cols=114  Identities=16%  Similarity=0.180  Sum_probs=75.7

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf             68089961220211110199985210246899999853788998189878724638999899999998228982899807
Q gi|254781047|r  261 GGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSE  340 (404)
Q Consensus       261 ~gR~i~v~~~~~~va~f~F~eLC~~~lg~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~  340 (404)
                      .|-++.+...-..-+.++|++||-.+-....+..+.++=+.++|=-=|.=+  .+.  --.-+++-.+-....+ +++.+
T Consensus       219 ~GEkvVlRil~~~~~~l~l~~Lg~~~~~~~~~~~~~~~p~GliLvTGPTGS--GKT--TTLY~~L~~ln~~~~n-I~TiE  293 (500)
T COG2804         219 YGEKVVLRILDKDQVILDLEKLGMSPFQLARLLRLLNRPQGLILVTGPTGS--GKT--TTLYAALSELNTPERN-IITIE  293 (500)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHCCCEEEEEECCCCC--CHH--HHHHHHHHHHCCCCCE-EEEEE
T ss_conf             785789998333124688878389988999999997289708999689999--889--9999999986278850-89840


Q ss_pred             CCHHHHCCC------------------------------------------------CC-------CCCCHHHHHHHHHH
Q ss_conf             897880134------------------------------------------------67-------65313489989887
Q gi|254781047|r  341 ENIEDLFPY------------------------------------------------KL-------RKGAFEIQRTVSRL  365 (404)
Q Consensus       341 ~~~~~L~~~------------------------------------------------~~-------~~~~F~f~Rt~SRL  365 (404)
                      .|+|-...+                                                ||       +..  +-.=++.||
T Consensus       294 DPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD~ETAeiavqAalTGHLVlSTlHtn--da~~ai~RL  371 (500)
T COG2804         294 DPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRDLETAEIAVQAALTGHLVLSTLHTN--DAPGAITRL  371 (500)
T ss_pred             CCEEEECCCCCEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCC--CHHHHHHHH
T ss_conf             780451598515631403599789999998665998599835577889999999984288676610217--658899999


Q ss_pred             HHHCCHHHHHHCCCCC
Q ss_conf             4524278897244426
Q gi|254781047|r  366 YEMFSAQYIGKNKIII  381 (404)
Q Consensus       366 ~EMqS~~yl~~~~~~~  381 (404)
                      .||+=+.|+-..++..
T Consensus       372 ~~mGv~~~~l~s~l~g  387 (500)
T COG2804         372 LEMGVEPYLLASSLLG  387 (500)
T ss_pred             HHCCCCHHHHHHHHHH
T ss_conf             9849988999999999


No 344
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=78.64  E-value=1.8  Score=23.07  Aligned_cols=24  Identities=29%  Similarity=0.524  Sum_probs=16.7

Q ss_pred             CCEEE-EECCCCCCHHHH-HHHHHHH
Q ss_conf             86499-888887728999-9999985
Q gi|254781047|r   66 MQGIY-LHGDVGQGKSML-MNLFFAL   89 (404)
Q Consensus        66 ~kGlY-L~G~VG~GKT~L-MdlFy~~   89 (404)
                      +..++ |+|+.|+|||-| |.+...+
T Consensus        18 ~G~itEi~G~~GsGKTql~lqla~~~   43 (235)
T cd01123          18 TGSITEIFGEFGSGKTQLCHQLAVTV   43 (235)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             78799999999984999999999998


No 345
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=78.55  E-value=5.3  Score=20.04  Aligned_cols=70  Identities=16%  Similarity=0.187  Sum_probs=39.7

Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             99999997488778989999999999999998613543332256643102466666688649988888772899999999
Q gi|254781047|r    8 SRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLFF   87 (404)
Q Consensus         8 ~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlFy   87 (404)
                      ......+.+--+--+.+-..+..+|-.=|.+.   +-            ....+..-.|+-+-+-|+-|+|||.|.--.-
T Consensus         7 ~eIv~~LD~yIIGQ~~AKkavAVAlrNr~RR~---~l------------~~~lr~Ei~pkNILmIGPTGvGKTeIARrLA   71 (442)
T PRK05201          7 REIVSELDKYIIGQDDAKRAVAIALRNRWRRM---QL------------PEELRDEVTPKNILMIGPTGVGKTEIARRLA   71 (442)
T ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH---CC------------CCCCCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf             99999853601082776678777887778753---16------------6221233464316887888866789999999


Q ss_pred             HHCCC
Q ss_conf             85781
Q gi|254781047|r   88 ALVPI   92 (404)
Q Consensus        88 ~~l~~   92 (404)
                      ..+..
T Consensus        72 kl~~a   76 (442)
T PRK05201         72 KLANA   76 (442)
T ss_pred             HHHCC
T ss_conf             98489


No 346
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=78.41  E-value=1.7  Score=23.15  Aligned_cols=24  Identities=17%  Similarity=0.156  Sum_probs=18.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf             649988888772899999999857
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALV   90 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l   90 (404)
                      +=.-|.||.|+|||.||.+.-..+
T Consensus        17 QR~gI~g~~gvGKT~Ll~~i~~~~   40 (249)
T cd01128          17 QRGLIVAPPKAGKTTLLQSIANAI   40 (249)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             677887899988999999999999


No 347
>pfam00493 MCM MCM2/3/5 family.
Probab=78.40  E-value=2.3  Score=22.39  Aligned_cols=24  Identities=38%  Similarity=0.600  Sum_probs=21.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             499888887728999999998578
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      -+-|-|++|+|||.|+.......|
T Consensus        59 hiLLvGdPG~gKSqlLk~~~~~~p   82 (327)
T pfam00493        59 NVLLVGDPGTAKSQLLKYVAKLAP   82 (327)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             189846998156099999998688


No 348
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine.  MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli  branched-chain amino acid transporter.  MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs.  The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=77.97  E-value=5.6  Score=19.93  Aligned_cols=25  Identities=32%  Similarity=0.325  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             4998888877289999999985781
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      =+=|-|+-|.|||-|+.++.-.++.
T Consensus        28 i~gliG~nGaGKSTL~~~i~Gl~~p   52 (236)
T cd03219          28 IHGLIGPNGAGKTTLFNLISGFLRP   52 (236)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf             9999989997399999999679878


No 349
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import.  Responsible for energy coupling to the transport system.  The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP).  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.58  E-value=5.7  Score=19.86  Aligned_cols=24  Identities=33%  Similarity=0.452  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             499888887728999999998578
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      =+=|-|+-|+|||-|+.+..--.+
T Consensus        30 ~~~iiGpSGsGKSTll~~i~Gl~~   53 (239)
T cd03296          30 LVALLGPSGSGKTTLLRLIAGLER   53 (239)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999999999779999999976999


No 350
>TIGR01249 pro_imino_pep_1 proline iminopeptidase; InterPro: IPR005944   Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases .   Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This group of serine peptidase belong to MEROPS peptidase family S33 (clan SC). They are proline iminopeptidase (Prolyl aminopeptidase, 3.4.11.5 from EC), which catalyzes the removal of the N-terminal proline from peptides. This family represents one of two related families of proline iminopeptidase containing the alpha/beta fold. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.  ; GO: 0016804 prolyl aminopeptidase activity, 0005737 cytoplasm.
Probab=77.35  E-value=1.2  Score=24.15  Aligned_cols=109  Identities=18%  Similarity=0.218  Sum_probs=51.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH--HHHCCCC--CCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf             499888887728999999998578111468889999999999999--9713112--246655780789999996138799
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRII--MYRKKIE--FGEILESDPIPLVASSIALESRVL  143 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~--~~~~~~~--~~~~~~~dpl~~va~~l~~~~~lL  143 (404)
                      =||||||+|.|=.            ++.||+|==++.     |+-  -.||..+  ...-..+|--...+.++-+=-.-|
T Consensus        30 V~~lHGGPGsGt~------------~~~r~fFdpe~~-----rIvL~DQRGcGkS~p~a~~~eNtTWdLV~DiEkLR~~L   92 (310)
T TIGR01249        30 VVFLHGGPGSGTD------------PECRRFFDPETY-----RIVLLDQRGCGKSTPHACLEENTTWDLVADIEKLREKL   92 (310)
T ss_pred             EEEEECCCCCCCC------------CCCCCCCCCCCE-----EEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             8997568789988------------344645376635-----89998307888986243322477056674399999862


Q ss_pred             EEEEEEE-----------------CCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCC-------CHHHHHHHHH
Q ss_conf             9842320-----------------471358889999999985496899817868677523874-------0566898999
Q gi|254781047|r  144 CFDEFMI-----------------TNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEI-------NRNVLVSFIE  199 (404)
Q Consensus       144 CfDEF~V-----------------~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GL-------qR~~FlPfI~  199 (404)
                      =|-+-+|                 .+..+-++|+.+|         |.=.  .--+.+|.+|+       +.++|.-.|.
T Consensus        93 ~I~~W~vFGGSWGStLALaYAq~HP~~v~~lvLRgiF---------L~R~--~e~~w~~~~G~~~~~YP~~w~~F~d~IP  161 (310)
T TIGR01249        93 GIKKWLVFGGSWGSTLALAYAQTHPEKVTGLVLRGIF---------LLRE--KELSWFYEGGLASMIYPDAWQRFVDSIP  161 (310)
T ss_pred             CCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHH---------HCCH--HHHHHHHHCCCCCCCCCHHHHHHHCCCC
T ss_conf             8971488538778999999860162465355655676---------3286--6789997268702347255665410587


Q ss_pred             HHHHC
Q ss_conf             99850
Q gi|254781047|r  200 LLEKK  204 (404)
Q Consensus       200 ~lk~~  204 (404)
                      --+++
T Consensus       162 ~~~r~  166 (310)
T TIGR01249       162 ENERN  166 (310)
T ss_pred             CCCCC
T ss_conf             40136


No 351
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=77.07  E-value=3.2  Score=21.44  Aligned_cols=133  Identities=11%  Similarity=0.080  Sum_probs=72.7

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHH------H-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             88649988888772899999999857811146------8-8899999999999999713112246655780789999996
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKC------R-LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIA  137 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~------R-~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~  137 (404)
                      -|-++-+.|+.|.||.-+...|-..+-+..+.      . -.=.-+...-|-.+|......+ +....-|-|..+.+.+.
T Consensus        23 l~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~~C~l~~~~~HPD~~~i~pe~~-~~~I~IdqIR~l~~~~~  101 (334)
T PRK07993         23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KSSLGVDAVREVTEKLY  101 (334)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCC-CCCCCHHHHHHHHHHHH
T ss_conf             10467547999988999999999998189999999999997899986689998477534223-45599999999999984


Q ss_pred             -----CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf             -----138799984232047135888999999998549689981786867752387405668989999985050898047
Q gi|254781047|r  138 -----LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS  212 (404)
Q Consensus       138 -----~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~  212 (404)
                           ...+|+-+|+-+--+++-|=-|=+.+|.= -.++++|.+|+.+ +          +.+|   .|..+|.++++..
T Consensus       102 ~~~~~g~~kV~iI~~Ae~mn~~AaNaLLKtLEEP-p~~t~~iL~t~~~-~----------~lLp---TI~SRCq~~~~~~  166 (334)
T PRK07993        102 EHARLGGAKVVWLPDAALLTDAAANALLKTLEEP-PEKTWFFLACREP-A----------RLLA---TLRSRCRLHYLAP  166 (334)
T ss_pred             HCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCC-CCCEEEEEECCCH-H----------HCCC---HHHHHCCCCCCCC
T ss_conf             3665699479997667775999999999861279-9884999866985-6----------5723---8875230415899


Q ss_pred             C
Q ss_conf             3
Q gi|254781047|r  213 G  213 (404)
Q Consensus       213 ~  213 (404)
                      .
T Consensus       167 ~  167 (334)
T PRK07993        167 P  167 (334)
T ss_pred             C
T ss_conf             7


No 352
>pfam04310 MukB MukB N-terminal. This family represents the N-terminal region of MukB, one of a group of bacterial proteins essential for the movement of nucleoids from mid-cell towards the cell quarters (i.e. chromosome partitioning). The structure of the N-terminal domain consists of an antiparallel six-stranded beta sheet surrounded by one helix on one side and by five helices on the other side. It contains an exposed Walker A loop in an unexpected helix-loop-helix motif (in other proteins, Walker A motifs generally adopt a P loop conformation as part of a strand-loop-helix motif embedded in a conserved topology of alternating helices and (parallel) beta strands).
Probab=77.04  E-value=1  Score=24.62  Aligned_cols=33  Identities=36%  Similarity=0.466  Sum_probs=27.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             4998888877289999999985781114688899
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY  101 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh  101 (404)
                      =.-|-|+=|.|||-+|..|+-++ ++.-+.+||-
T Consensus        29 vttLsG~NGAGKsT~m~Af~tal-IPDl~~l~fr   61 (227)
T pfam04310        29 VTTLSGGNGAGKSTTMAAFITAL-IPDLSLLHFR   61 (227)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH-CCCCEEEEEC
T ss_conf             68864478765487999999986-6664388621


No 353
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=76.96  E-value=5.9  Score=19.75  Aligned_cols=135  Identities=12%  Similarity=0.160  Sum_probs=70.2

Q ss_pred             EEEEECCCCCCHHHHHHHHH-HHCCCC------HHHHHHHHHHHHHHHHHHHHHHCCC-----CCCC-CCCCCHHH----
Q ss_conf             49988888772899999999-857811------1468889999999999999971311-----2246-65578078----
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFF-ALVPIE------KKCRLHFYEFMKDVHSRIIMYRKKI-----EFGE-ILESDPIP----  130 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy-~~l~~~------~K~R~HFh~FM~~ih~~l~~~~~~~-----~~~~-~~~~dpl~----  130 (404)
                      -+-|-|+.|+|||-..=.++ +.-...      .=||+-=..-=..|-+++.+--|..     .... .....-|.    
T Consensus        22 ~~vl~a~tGsGKtTqvP~~ll~~~~~~g~I~~~qPRR~AA~s~A~RvA~e~~e~~G~~VGY~vR~e~~~s~~Tri~~~T~  101 (812)
T PRK11664         22 QVLLKAPTGAGKSTWLPLQLLQQGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKVGPNTRLEVVTE  101 (812)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEECH
T ss_conf             79999089999899999999964688993899388399999999999997299999867578256778899857999755


Q ss_pred             ------HHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHH--HHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             ------999999613879998423204713588899999999--854968998178686775238740566898999998
Q gi|254781047|r  131 ------LVASSIALESRVLCFDEFMITNIADAIILSRLFAAL--FSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLE  202 (404)
Q Consensus       131 ------~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~l--f~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk  202 (404)
                            ...+-...++..+-|||||=.++.--.+|+=+.+..  ....+.||..|-+.-.+.+.+         +    -
T Consensus       102 GiLlr~l~~dp~L~~~~~vI~DE~HER~l~~Dl~l~l~~~~~~~~r~dLklvvMSATld~~~~~~---------~----~  168 (812)
T PRK11664        102 GILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQ---------L----L  168 (812)
T ss_pred             HHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH---------H----C
T ss_conf             89999972497767788899957546875189999999999986189828999847888488997---------5----8


Q ss_pred             HCCEEEECCCCCHH
Q ss_conf             50508980473112
Q gi|254781047|r  203 KKLEIISLDSGQDY  216 (404)
Q Consensus       203 ~~~~V~~l~~~~DY  216 (404)
                      ..|.|++..| +-|
T Consensus       169 ~~~~~i~~~g-r~f  181 (812)
T PRK11664        169 PDAPYIESEG-RSF  181 (812)
T ss_pred             CCCCEEEECC-CCC
T ss_conf             9998898787-433


No 354
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=76.52  E-value=2.2  Score=22.44  Aligned_cols=27  Identities=26%  Similarity=0.298  Sum_probs=21.4

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             886499888887728999999998578
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      .-||+.+-||+|+|||-|-=..-+.+-
T Consensus        64 aGrgiLi~GppgTGKTAlA~gIa~eLG   90 (450)
T COG1224          64 AGRGILIVGPPGTGKTALAMGIARELG   90 (450)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             661799978999768899999999858


No 355
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=76.47  E-value=6.1  Score=19.67  Aligned_cols=52  Identities=15%  Similarity=0.202  Sum_probs=43.9

Q ss_pred             HHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCC-CEEEEECCCCH
Q ss_conf             8999999613879998423-2047135888999999998549-68998178686
Q gi|254781047|r  130 PLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHG-CIIVMTSNFIP  181 (404)
Q Consensus       130 ~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~g-v~lV~TSN~~P  181 (404)
                      ..+|..|+.+.++|++||= -=-|+.-+..+..++..+-+.| .++++||-..-
T Consensus       145 l~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~  198 (293)
T COG1131         145 LSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE  198 (293)
T ss_pred             HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH
T ss_conf             999999966999999969977879999999999999999679959999838869


No 356
>PRK10689 transcription-repair coupling factor; Provisional
Probab=76.32  E-value=6.2  Score=19.64  Aligned_cols=24  Identities=13%  Similarity=-0.072  Sum_probs=12.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             499888887728999999998578
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      -..+-|=.|..+++++..++...+
T Consensus        16 ~~~l~gL~GSA~al~lA~l~~~~~   39 (1148)
T PRK10689         16 QRQLGELTGAACATLVAEIAERHA   39 (1148)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             126778860699999999999709


No 357
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=76.32  E-value=3.5  Score=21.25  Aligned_cols=31  Identities=10%  Similarity=0.143  Sum_probs=17.8

Q ss_pred             CCCHHHHHCCCCCHHHHHHHHHHH-HHCCEEE
Q ss_conf             868677523874056689899999-8505089
Q gi|254781047|r  178 NFIPENLYKDEINRNVLVSFIELL-EKKLEII  208 (404)
Q Consensus       178 N~~P~dLY~~GLqR~~FlPfI~~l-k~~~~V~  208 (404)
                      ...+++|-..|-..+....|+... +.+..++
T Consensus       112 ~~tl~~L~~~g~~~~~~~~~L~~~v~~~~~il  143 (283)
T pfam00437       112 SLTLDDLGMTGAFDADIAEFLRQAVQARGNIL  143 (283)
T ss_pred             CCCHHHHCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf             89999973897785999999999998197599


No 358
>KOG0480 consensus
Probab=75.90  E-value=3.7  Score=21.08  Aligned_cols=252  Identities=17%  Similarity=0.229  Sum_probs=122.5

Q ss_pred             CCCCCE---EEEECCCCCCHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC------HH
Q ss_conf             668864---9988888772899999999857811----1468889999999999999971311224665578------07
Q gi|254781047|r   63 YCSMQG---IYLHGDVGQGKSMLMNLFFALVPIE----KKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESD------PI  129 (404)
Q Consensus        63 ~~~~kG---lYL~G~VG~GKT~LMdlFy~~l~~~----~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~d------pl  129 (404)
                      ..+.||   +-|-|++|.|||=++..-.+-+|-.    .|-                  ....+......+|      .|
T Consensus       372 g~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGka------------------SSaAGLTaaVvkD~esgdf~i  433 (764)
T KOG0480         372 GTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKA------------------SSAAGLTAAVVKDEESGDFTI  433 (764)
T ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEECCCC------------------CCCCCCEEEEEECCCCCCEEE
T ss_conf             86546773189957997138899999865487315850763------------------443464689976377773355


Q ss_pred             HHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCC-----CEEEEECCCCHHHHHC-----CCCCHHHHH----
Q ss_conf             89999996138799984232047135888999999998549-----6899817868677523-----874056689----
Q gi|254781047|r  130 PLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHG-----CIIVMTSNFIPENLYK-----DEINRNVLV----  195 (404)
Q Consensus       130 ~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~g-----v~lV~TSN~~P~dLY~-----~GLqR~~Fl----  195 (404)
                      +. ..-+..+.-+.|+|||-=-|+.|-.-|   ++++=++-     .-++||=|.--.-|-.     +-.+|.+=+    
T Consensus       434 EA-GALmLADnGICCIDEFDKMd~~dqvAi---hEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi  509 (764)
T KOG0480         434 EA-GALMLADNGICCIDEFDKMDVKDQVAI---HEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENI  509 (764)
T ss_pred             EC-CCEEECCCCEEEECHHCCCCHHHHHHH---HHHHHHHEEHHEECCEEEEECCHHHHHHHCCCCCCCCCCCCCHHHHC
T ss_conf             34-737881696688310003570768999---99987510003302068862223555553277677455330066522


Q ss_pred             HHHHHHHHCCEEEE-----CCCCCHHHHC--------CCCCC--C----------------EEEEC-CCHHHHHHHHHHH
Q ss_conf             89999985050898-----0473112211--------23678--3----------------02203-5302268999999
Q gi|254781047|r  196 SFIELLEKKLEIIS-----LDSGQDYRRK--------EQSIL--P----------------IYMTP-LNSYNRVLMDKLW  243 (404)
Q Consensus       196 PfI~~lk~~~~V~~-----l~~~~DYR~~--------~~~~~--~----------------~y~~p-~~~~~~~~l~~~f  243 (404)
                      .+=+-|-.+|+.+-     .+...||-..        .+..+  .                ++|.| ++.++...+.+.+
T Consensus       510 ~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y  589 (764)
T KOG0480         510 NMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKY  589 (764)
T ss_pred             CCCCHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             77804542222799993578667779999999987436211023256664999999999987537532489999999999


Q ss_pred             HHHCCCCCCC----CCCEEEECCEEE-EECCCCCCCCCCCHHHHHHHHCCHHHHHHHHH-HCCEEEECCCCCCC------
Q ss_conf             9860444467----763276368089-96122021111019998521024689999985-37889981898787------
Q gi|254781047|r  244 AHITKGKKSL----SLNISTEGGYEI-HVPFFCSRVSRFSFFDLCDRPLSANDFVEIAN-RFDVVIINDIPLLK------  311 (404)
Q Consensus       244 ~~l~~~~~~~----~~~i~v~~gR~i-~v~~~~~~va~f~F~eLC~~~lg~~DYi~Ia~-~f~ti~I~~VP~l~------  311 (404)
                      ..+.......    +-.|.+   |.+ ...+.+...|+..-.+.-. +--++|-.+|-+ .+=-+-.+++-..+      
T Consensus       590 ~~lR~~~~~~~~~~s~~ITv---RqLESlIRLsEA~Ar~~~~devt-~~~v~ea~eLlk~Siv~ve~ddi~~~d~~~~~~  665 (764)
T KOG0480         590 KGLRQRDAQGNNRSSYRITV---RQLESLIRLSEARARVECRDEVT-KEDVEEAVELLKKSIVRVEGDDIELDDNDGEND  665 (764)
T ss_pred             HHHHHHHCCCCCCCCCCCCH---HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCC
T ss_conf             99877410256766665069---99898999999998633242326-999999999987533140254114566655567


Q ss_pred             ---CCCHHHHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf             ---24638999899999998228982899807
Q gi|254781047|r  312 ---EDRKDWIKRFIMLIDVFYEHKIGLIISSE  340 (404)
Q Consensus       312 ---~~~~d~arRFI~LID~lYd~kv~Li~sa~  340 (404)
                         .+..-.+.||+.=-|.--+....++.+-.
T Consensus       666 ~~g~s~~~~~k~~~~a~~~y~~~~~~~v~~~~  697 (764)
T KOG0480         666 SGGESAQKPKKKFTSALDEYVRLSNGIVLSIR  697 (764)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCEEEEEE
T ss_conf             64323310466889999999987616268988


No 359
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=75.73  E-value=6.4  Score=19.55  Aligned_cols=19  Identities=16%  Similarity=0.137  Sum_probs=14.0

Q ss_pred             EEEECCCCCCHHHHHHHHH
Q ss_conf             9988888772899999999
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFF   87 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy   87 (404)
                      +-+-|++|.|||.++--+-
T Consensus        22 ~vi~g~pg~GKS~~~~~~a   40 (186)
T pfam03796        22 IIIAARPSMGKTAFALNIA   40 (186)
T ss_pred             EEEEECCCCCHHHHHHHHH
T ss_conf             9999679998799999999


No 360
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=75.59  E-value=6.5  Score=19.52  Aligned_cols=54  Identities=24%  Similarity=0.316  Sum_probs=46.4

Q ss_pred             HHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf             78999999613879998423-2047135888999999998549689981786867
Q gi|254781047|r  129 IPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPE  182 (404)
Q Consensus       129 l~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~  182 (404)
                      .-.+|..++.+.++|.+||= ---|+..+.-+.+++..|-+.|.++|.+|-+..+
T Consensus       148 rv~ia~aL~~~p~lliLDEPts~LD~~~~~~l~~~l~~l~~~G~til~isH~l~~  202 (501)
T PRK11288        148 MVEIAKALMRNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEE  202 (501)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCHHH
T ss_conf             9999999860998999658745689899999988999998727612651332899


No 361
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487   ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent  molecular chaperone and is the regulatory subunit of the ClpXP protease .   ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates .    The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA .  ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=75.28  E-value=3.2  Score=21.47  Aligned_cols=205  Identities=12%  Similarity=0.193  Sum_probs=93.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC--------
Q ss_conf             499888887728999999998578111468889999999999999971311224665578078999999613--------
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALE--------  139 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~--------  139 (404)
                      -|-|=||-|.|||+|-.++-..+.++=-        |.+.= .|.++-    ..   .+| .+=|-.+|...        
T Consensus       154 NILLiGPTGSGKTLLAqTLA~~L~VPfA--------iADAT-tLTEAG----YV---GED-VENIL~~Llq~ad~DV~kA  216 (452)
T TIGR00382       154 NILLIGPTGSGKTLLAQTLARILNVPFA--------IADAT-TLTEAG----YV---GED-VENILLKLLQAADYDVEKA  216 (452)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCCEE--------ECCHH-HHHCCC----CC---CCC-HHHHHHHHHHHCCCCHHHH
T ss_conf             6245468885268999999987388742--------11111-020066----42---422-8899999987414552452


Q ss_pred             -CCEEEEEEEE-----------ECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEE
Q ss_conf             -8799984232-----------0471358889999999985496899817868677523874056689899999850508
Q gi|254781047|r  140 -SRVLCFDEFM-----------ITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEI  207 (404)
Q Consensus       140 -~~lLCfDEF~-----------V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V  207 (404)
                       -=+++|||.-           -.||.=--.=--||+ +.+ |.+    .|.||..==|++-|-  |+   ++  +.-+|
T Consensus       217 ~kGIiYIDEIDKIaRkSEN~SITRDVSGEGVQQALLK-i~E-GTv----A~vPPqGGRKHP~~~--~i---qi--DTs~I  283 (452)
T TIGR00382       217 QKGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLK-IIE-GTV----ANVPPQGGRKHPQQE--FI---QI--DTSNI  283 (452)
T ss_pred             CCCEEEEECCCCHHHHCCCCEEEEEECCCHHHHHHHH-HHH-CCE----EEECCCCCCCCCCCC--EE---EE--CCCCE
T ss_conf             7850898422310121577801122175549999998-760-323----431754488688657--68---86--47640


Q ss_pred             EECCC--------CCHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCH
Q ss_conf             98047--------3112211236783022035302268999999986044446776327636808996122021111019
Q gi|254781047|r  208 ISLDS--------GQDYRRKEQSILPIYMTPLNSYNRVLMDKLWAHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSF  279 (404)
Q Consensus       208 ~~l~~--------~~DYR~~~~~~~~~y~~p~~~~~~~~l~~~f~~l~~~~~~~~~~i~v~~gR~i~v~~~~~~va~f~F  279 (404)
                      .=+-|        -.+-|....++-++--.......+.....++..+....=..-.-|.-.=|| +|+..+-+.+--=..
T Consensus       284 LFICGGAF~GL~~iI~~R~~~~~~iGF~~~~~~~~~~~~~~~~L~~v~~~DL~kFGLIPEfIGR-LPV~a~L~~L~~eAL  362 (452)
T TIGR00382       284 LFICGGAFVGLEKIIKKRTEKKSSIGFGAEVKKKSKEKSEEELLRQVEPEDLVKFGLIPEFIGR-LPVIATLEKLDEEAL  362 (452)
T ss_pred             EEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCC-CCCEECCCCCCHHHH
T ss_conf             0110543444899998874555333545521004578789999975171112210555101105-340202787887899


Q ss_pred             HHHHHHHCCHHHHHHHHHHCCEEE-ECCCC
Q ss_conf             998521024689999985378899-81898
Q gi|254781047|r  280 FDLCDRPLSANDFVEIANRFDVVI-INDIP  308 (404)
Q Consensus       280 ~eLC~~~lg~~DYi~Ia~~f~ti~-I~~VP  308 (404)
                      =++-.+|.     .+|.++|..+| +++|-
T Consensus       363 ~~IL~~Pk-----NAlvKQY~~lf~ld~Ve  387 (452)
T TIGR00382       363 IAILTKPK-----NALVKQYQALFKLDNVE  387 (452)
T ss_pred             HHHHHCCC-----HHHHHHHHHHHCCCCCC
T ss_conf             99852544-----44889999971645611


No 362
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=75.02  E-value=6  Score=19.74  Aligned_cols=100  Identities=25%  Similarity=0.270  Sum_probs=51.9

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHCC--------------CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             666886499888887728999999998578--------------111468889999999999999971311224665578
Q gi|254781047|r   62 KYCSMQGIYLHGDVGQGKSMLMNLFFALVP--------------IEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESD  127 (404)
Q Consensus        62 ~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~--------------~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~d  127 (404)
                      ..+||==+-+-|++|+|||-||..+.....              -.+++|+-|-+--.++|+-+--+             
T Consensus        65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~Dl~~miDva-------------  131 (1077)
T COG5192          65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSDLHQMIDVA-------------  131 (1077)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEEEECHHHHHHHHHHH-------------
T ss_conf             5899758996369988746899999999877542036786478615635789886717888887688-------------


Q ss_pred             HHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCC
Q ss_conf             078999999613879998423204713588899999999854968998178686775238
Q gi|254781047|r  128 PIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKD  187 (404)
Q Consensus       128 pl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~  187 (404)
                             +|+ +.-||.+|-    +-+=-|=--.++.-|..+|..-|+.--++- ||+++
T Consensus       132 -------KIa-DLVlLlIdg----nfGfEMETmEFLnil~~HGmPrvlgV~Thl-Dlfk~  178 (1077)
T COG5192         132 -------KIA-DLVLLLIDG----NFGFEMETMEFLNILISHGMPRVLGVVTHL-DLFKN  178 (1077)
T ss_pred             -------HHH-HEEEEEECC----CCCCEEHHHHHHHHHHHCCCCCEEEEEEEC-CCCCC
T ss_conf             -------752-135788636----667042488999998664897247888621-13358


No 363
>PRK01172 ski2-like helicase; Provisional
Probab=74.88  E-value=6.7  Score=19.41  Aligned_cols=140  Identities=15%  Similarity=0.215  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf             89999999974887789899999999999999986135433322566431024666666886499888887728999999
Q gi|254781047|r    6 VSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNL   85 (404)
Q Consensus         6 ~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdl   85 (404)
                      +...+.+..+.+++++.|-|..++..+.       +                        -+.+-+--|-|.|||++-.+
T Consensus         8 ~~~~~~~~~~~~g~~l~p~Q~ea~~~~~-------~------------------------gkNllvsaPTgsGKTlvAe~   56 (674)
T PRK01172          8 YDDEFLNLFTGNDFELYDHQRMAIEQLR-------K------------------------GENVIVSVPTAAGKTLIAYS   56 (674)
T ss_pred             CCHHHHHHHHHCCCCCCHHHHHHHHHHH-------C------------------------CCCEEEECCCCCCHHHHHHH
T ss_conf             9979999999679988989999999997-------7------------------------99599978999869999999


Q ss_pred             HHH-HCCCCHH----------HHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCCH-----------HHHHHHH------
Q ss_conf             998-5781114----------6888999999999999997131--12246655780-----------7899999------
Q gi|254781047|r   86 FFA-LVPIEKK----------CRLHFYEFMKDVHSRIIMYRKK--IEFGEILESDP-----------IPLVASS------  135 (404)
Q Consensus        86 Fy~-~l~~~~K----------~R~HFh~FM~~ih~~l~~~~~~--~~~~~~~~~dp-----------l~~va~~------  135 (404)
                      .-- .+...+|          -+=-|.+|     .++....-+  ...+. ...+|           -...++.      
T Consensus        57 ai~~~l~~~~k~iyi~P~kAL~~EK~~~~-----~~~~~~g~~v~~~tGd-~~~~~~~~~~~~I~V~T~Ek~~sl~~~~~  130 (674)
T PRK01172         57 AIYETFLAGLKSIYIVPLRSLAMEKYEEL-----SRLRSLGMRVKISIGD-YDDPPDFIKRYDVVILTSEKADSLIHHDP  130 (674)
T ss_pred             HHHHHHHHCCCEEEECCHHHHHHHHHHHH-----HHHHCCCCEEEEEECC-CCCCCCCCCCCCEEEECHHHHHHHHHCCC
T ss_conf             99999985897999877899999999999-----9887379827788538-88980102558999987899999986495


Q ss_pred             -HHCCCCEEEEEEEEEC-CCHHHHHHHHHHHHH--HHCCCEEEEECCCCHH
Q ss_conf             -9613879998423204-713588899999999--8549689981786867
Q gi|254781047|r  136 -IALESRVLCFDEFMIT-NIADAIILSRLFAAL--FSHGCIIVMTSNFIPE  182 (404)
Q Consensus       136 -l~~~~~lLCfDEF~V~-DiaDAmil~rl~~~l--f~~gv~lV~TSN~~P~  182 (404)
                       ..++..++-+||+|.- |-.=.-.+.-++..+  ...++-+|+-|=+-|+
T Consensus       131 ~~l~~v~~vViDEiH~i~d~~RG~~lE~~l~kl~~l~~~~qiIgLSATi~N  181 (674)
T PRK01172        131 YIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSN  181 (674)
T ss_pred             HHHCCCCEEEEECCEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             022136989982652506877249999999999853866079971578689


No 364
>PRK01156 chromosome segregation protein; Provisional
Probab=74.87  E-value=2.6  Score=22.00  Aligned_cols=39  Identities=13%  Similarity=0.174  Sum_probs=19.5

Q ss_pred             CHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             4689999985378899818987872463899989999999822
Q gi|254781047|r  288 SANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYE  330 (404)
Q Consensus       288 g~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd  330 (404)
                      |-++|+  +.....+|||.+-.  .-..+...+++..|+.+..
T Consensus       817 aL~~~~--~~~~~~~ilDE~~~--~LD~~~~~~l~~~l~~~~~  855 (895)
T PRK01156        817 AVAQFL--NNDKSLLIMDEPTA--FLDEDRRTNLKDIIEYSLK  855 (895)
T ss_pred             HHHHHH--HCCCCEEEEECCCC--CCCHHHHHHHHHHHHHHHH
T ss_conf             999998--45899599859987--7587789999999999986


No 365
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component.  The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=74.62  E-value=6.8  Score=19.37  Aligned_cols=21  Identities=43%  Similarity=0.733  Sum_probs=18.1

Q ss_pred             EECCCCCCHHHHHHHHHHHCC
Q ss_conf             888887728999999998578
Q gi|254781047|r   71 LHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        71 L~G~VG~GKT~LMdlFy~~l~   91 (404)
                      |-|+=|.|||-||.+..-.++
T Consensus        30 llGpNGAGKSTll~~i~Gl~~   50 (211)
T cd03264          30 LLGPNGAGKTTLMRILATLTP   50 (211)
T ss_pred             EECCCCCHHHHHHHHHHCCCC
T ss_conf             999998239999999975966


No 366
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP).  It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=74.57  E-value=6.9  Score=19.36  Aligned_cols=122  Identities=19%  Similarity=0.181  Sum_probs=55.9

Q ss_pred             CCEEE-EECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf             86499-88888772899999999857811146888999999999999997131122466557807899999961387999
Q gi|254781047|r   66 MQGIY-LHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC  144 (404)
Q Consensus        66 ~kGlY-L~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC  144 (404)
                      +.|+. +-|+.|.|||-.|..+.+.+....+ ++.=-+=  -+...+....+. ........+.-..+..-|-.+-++|.
T Consensus        79 ~~GlilitGptGSGKtTtl~a~l~~~~~~~~-~i~tiEd--PvE~~~~~~~Q~-~v~~~~g~~~~~~lr~~LR~dPDvi~  154 (264)
T cd01129          79 PHGIILVTGPTGSGKTTTLYSALSELNTPEK-NIITVED--PVEYQIPGINQV-QVNEKAGLTFARGLRAILRQDPDIIM  154 (264)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCCCCC-EEEEEEC--CCCCCCCCCCEE-EECCCCCCCHHHHHHHHHCCCCCEEE
T ss_conf             9988999789999779999999986436885-0899867--631456887357-61666687899999998556999887


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHCCCEEEEE--CCCCHHH---HHCCCCCHHHHHHH
Q ss_conf             84232047135888999999998549689981--7868677---52387405668989
Q gi|254781047|r  145 FDEFMITNIADAIILSRLFAALFSHGCIIVMT--SNFIPEN---LYKDEINRNVLVSF  197 (404)
Q Consensus       145 fDEF~V~DiaDAmil~rl~~~lf~~gv~lV~T--SN~~P~d---LY~~GLqR~~FlPf  197 (404)
                      ++|.  .|-..|.+.   +++. ..|-.+++|  .|-+++-   |-.=|+.+...-..
T Consensus       155 igEi--RD~eta~~a---~~aa-~tGhlV~tTlHa~~a~~~i~RL~~lgv~~~~l~~~  206 (264)
T cd01129         155 VGEI--RDAETAEIA---VQAA-LTGHLVLSTLHTNDAPGAITRLLDMGIESYLLSSA  206 (264)
T ss_pred             ECCC--CCHHHHHHH---HHHH-HHCCEEEEEECCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf             4688--999999999---9999-70996999970399999999999829998999999


No 367
>pfam03237 Terminase_6 Terminase-like family. This family represents a group of terminase proteins.
Probab=74.56  E-value=6.1  Score=19.70  Aligned_cols=112  Identities=14%  Similarity=0.115  Sum_probs=50.5

Q ss_pred             EECCCCCCHHHHHHHH--HHHCCCCHH-----------HHHHHHHHHHHHHHHHHHHHCCCCCCC-----CCCC---CHH
Q ss_conf             8888877289999999--985781114-----------688899999999999999713112246-----6557---807
Q gi|254781047|r   71 LHGDVGQGKSMLMNLF--FALVPIEKK-----------CRLHFYEFMKDVHSRIIMYRKKIEFGE-----ILES---DPI  129 (404)
Q Consensus        71 L~G~VG~GKT~LMdlF--y~~l~~~~K-----------~R~HFh~FM~~ih~~l~~~~~~~~~~~-----~~~~---dpl  129 (404)
                      +.|+.|.|||+++-..  +.++..+.+           .|.=|...+.++...+....-......     .+..   -+.
T Consensus         2 ~~ggr~~GKT~~~~~~~~~~a~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nGs~i~~~~~   81 (380)
T pfam03237         2 ILGSRQSGKTFAFAREALRHALGNGPKNQIILSASKAQARLEFKKGIIEIAGDLLEITFEEKNGNPIILPNGAKLYFLGL   81 (380)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEECCCCEEEEEEC
T ss_conf             42645252839999999999985899728999799999999999999996688638716727887399159988999625


Q ss_pred             H--HHHHHHH-CCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf             8--9999996-13879998423-20471358889999999985496899817868677
Q gi|254781047|r  130 P--LVASSIA-LESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPEN  183 (404)
Q Consensus       130 ~--~va~~l~-~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~d  183 (404)
                      .  .-++.+- .+...+.+||+ ++.+-+--..+.++.... ..+..+++|..-.|..
T Consensus        82 ~~~~~~~~~rG~~~~~i~~DE~a~~~~~~~~~~~~~~~~~~-~~~~~~~~stp~~~~~  138 (380)
T pfam03237        82 ESETTAQGYRGASIAGIYFDEATWLPKFQESELVRRLRATK-GKWRKTFFSTPPSPGH  138 (380)
T ss_pred             CCCCCHHHCCCCCCCEEEEEEHHHCCCHHHHHHHHHHHCCC-CCCCEEEEECCCCCCC
T ss_conf             77664310348545549983045366278999986441047-9975799988989985


No 368
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota.  The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed.  This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways.  Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO.  Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=74.48  E-value=6.9  Score=19.34  Aligned_cols=24  Identities=33%  Similarity=0.491  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             499888887728999999998578
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      =+-|-|+-|+|||-|+.+..-.++
T Consensus        29 i~~iiG~nGaGKSTLlk~i~Gl~~   52 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGLLG   52 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             999988999989999999964677


No 369
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=74.36  E-value=3.2  Score=21.47  Aligned_cols=148  Identities=20%  Similarity=0.258  Sum_probs=75.5

Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEE-CCCCCCH
Q ss_conf             970058999999997488778989999999999999998613543332256643102466666688649988-8887728
Q gi|254781047|r    1 MSLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLH-GDVGQGK   79 (404)
Q Consensus         1 m~~~~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~-G~VG~GK   79 (404)
                      ||++.+...|+-.    .+..=-.|..++..|..   .|...                      ..---||+ |.-|+||
T Consensus         1 msy~vlark~RP~----~f~e~vGQ~~v~~~L~n---al~~~----------------------rl~haylf~G~rGvGK   51 (717)
T PRK08853          1 MSYLALARKWRPT----QFKEVVGQSHVLTALEN---ALAHN----------------------RLHHAYLFSGTRGVGK   51 (717)
T ss_pred             CCCHHHHHHHCCC----CHHHHCCCHHHHHHHHH---HHHCC----------------------CCCCEEEEECCCCCCH
T ss_conf             9417777651798----56551385999999999---99709----------------------9740576108898889


Q ss_pred             HHHHHHHHHHCCCCHH--------H----H---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH-----HHCC
Q ss_conf             9999999985781114--------6----8---88999999999999997131122466557807899999-----9613
Q gi|254781047|r   80 SMLMNLFFALVPIEKK--------C----R---LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASS-----IALE  139 (404)
Q Consensus        80 T~LMdlFy~~l~~~~K--------~----R---~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~-----l~~~  139 (404)
                      |.+--+|-.++.+..-        .    -   -+|-+++     ++-...+      .+.+| +..+-..     ....
T Consensus        52 Tt~ARi~Ak~lNC~~~~~~~pcg~C~~C~~i~~g~~~d~~-----EiDaAs~------~~vdd-~rel~~~~~y~p~~~~  119 (717)
T PRK08853         52 TTIGRLFAKGLNCETGITSTPCGQCATCKEIDEGRFVDLL-----EIDAASR------TKVED-TRELLDNVQYKPARGR  119 (717)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCEE-----EECCCCC------CCHHH-HHHHHHHCCCCCCCCC
T ss_conf             8999999998678999999978887026767447877524-----5405656------78899-9999985554887785


Q ss_pred             CCEEEEEEEEECCCHHHHHHHHHHHHHH-------HCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf             8799984232047135888999999998-------54968998178686775238740566898999998505089804
Q gi|254781047|r  140 SRVLCFDEFMITNIADAIILSRLFAALF-------SHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD  211 (404)
Q Consensus       140 ~~lLCfDEF~V~DiaDAmil~rl~~~lf-------~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~  211 (404)
                      ++|..+||.|       |+=+.-|.+|.       .+-++|.+|-.  |..+             -..|-.+|.-+++.
T Consensus       120 yKvyiiDEvH-------mls~~afnAlLKtlEEPP~hv~FilaTT~--~~ki-------------p~TilSRc~~f~l~  176 (717)
T PRK08853        120 FKVYLIDEVH-------MLSRHSFNALLKTLEEPPEYVKFLLATTD--PQKL-------------PVTILSRCLQFHLK  176 (717)
T ss_pred             EEEEEEECHH-------HCCHHHHHHHHHHHCCCCCCEEEEEECCC--HHHC-------------CHHHHHHHHHCCCC
T ss_conf             4799983054-------43899999998760378756489984387--3437-------------38898765442326


No 370
>pfam05272 VirE Virulence-associated protein E. This family contains several bacterial virulence-associated protein E like proteins.
Probab=74.32  E-value=3.2  Score=21.49  Aligned_cols=123  Identities=20%  Similarity=0.285  Sum_probs=72.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf             49988888772899999999857811146888999999999999997131122466557807899999961387999842
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDE  147 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDE  147 (404)
                      -+=|.|+=|.|||-.    +..+- +        +|..+   .+.         ....+|.+.     ......++++||
T Consensus        54 vlvL~G~QG~gKStf----~~~L~-~--------~~~~d---~~~---------~~~~kD~~~-----~l~~~wi~el~E  103 (198)
T pfam05272        54 VLILQGAQGSGKSTF----LKKLG-G--------EWFTD---SIR---------SFEGKDAYE-----KLQGVWIVEIAE  103 (198)
T ss_pred             EEEEECCCCCCHHHH----HHHHH-H--------HHCCC---CCC---------CCCCCHHHH-----HHHHHHHHHHHH
T ss_conf             789988986789999----99973-7--------75156---555---------767738999-----999878732598


Q ss_pred             EEECCCHHHHHHHHHHHHH--------------HHCCCEEEEECCCCHHHHHCCCC-CHHHHHHHHHHHHHCCEEEECCC
Q ss_conf             3204713588899999999--------------85496899817868677523874-05668989999985050898047
Q gi|254781047|r  148 FMITNIADAIILSRLFAAL--------------FSHGCIIVMTSNFIPENLYKDEI-NRNVLVSFIELLEKKLEIISLDS  212 (404)
Q Consensus       148 F~V~DiaDAmil~rl~~~l--------------f~~gv~lV~TSN~~P~dLY~~GL-qR~~FlPfI~~lk~~~~V~~l~~  212 (404)
                      |.-..-+|.--++.++..-              +.+..++|+|+|...  ..+|.= +|            ++-++++..
T Consensus       104 l~~~~k~~~~~lK~fls~~~d~~R~pY~~~~~~~pR~~vfigTtN~~~--~L~D~TGnR------------RF~pi~v~~  169 (198)
T pfam05272       104 LDGFSKAEVEAIKAFITRTVDSFRAPYGRRAESFPRQCVFVGTTNRDE--FLKDPTGNR------------RFWPVKVGK  169 (198)
T ss_pred             HHHCCHHHHHHHHHHHCCHHHCCHHCCCCCCEECCEEEEEEEECCCCC--CCCCCCCCE------------EEEEEEECC
T ss_conf             751365329999998454131231022356400654799999638876--557999981------------689999688


Q ss_pred             CCHHHHCCCCCCCEEEECCCHHHHHHHHHHHHH
Q ss_conf             311221123678302203530226899999998
Q gi|254781047|r  213 GQDYRRKEQSILPIYMTPLNSYNRVLMDKLWAH  245 (404)
Q Consensus       213 ~~DYR~~~~~~~~~y~~p~~~~~~~~l~~~f~~  245 (404)
                      ..|-....           .+..++..+++|.+
T Consensus       170 ~~~~~~~~-----------~d~l~~~rdqlWAe  191 (198)
T pfam05272       170 KINIKHPV-----------SELLDEVRDQLWAE  191 (198)
T ss_pred             CCCCCCCC-----------HHHHHHHHHHHHHH
T ss_conf             54557675-----------57779999999999


No 371
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=74.29  E-value=7  Score=19.32  Aligned_cols=68  Identities=18%  Similarity=0.233  Sum_probs=48.9

Q ss_pred             HHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHC-CCEEEEECCC-----------------------CHHHH
Q ss_conf             8999999613879998423-204713588899999999854-9689981786-----------------------86775
Q gi|254781047|r  130 PLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSH-GCIIVMTSNF-----------------------IPENL  184 (404)
Q Consensus       130 ~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~-gv~lV~TSN~-----------------------~P~dL  184 (404)
                      -.+|..|+.+-+||++||= ---|+.-..-+..++..|.+. |+++|..+--                       .|+++
T Consensus       145 VaiARAL~~~P~vLLLDEPts~LD~~~r~~i~~~l~~L~~e~g~T~i~VTHD~~eA~~laDrI~Vm~~G~I~q~GtP~ev  224 (352)
T PRK10851        145 VALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV  224 (352)
T ss_pred             HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCEEEEEECCEEEEEECHHHH
T ss_conf             99999986599999990887668989999999999999997399899998899999986989999989999999388999


Q ss_pred             HCCCCCH--HHHHHH
Q ss_conf             2387405--668989
Q gi|254781047|r  185 YKDEINR--NVLVSF  197 (404)
Q Consensus       185 Y~~GLqR--~~FlPf  197 (404)
                      |.++-++  ..|+-.
T Consensus       225 y~~P~~~~vA~f~G~  239 (352)
T PRK10851        225 WREPATRFVLEFMGE  239 (352)
T ss_pred             HHCCCCHHHHHHCCC
T ss_conf             878998389873783


No 372
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=73.97  E-value=1.7  Score=23.15  Aligned_cols=21  Identities=29%  Similarity=0.475  Sum_probs=16.6

Q ss_pred             EEECCCCCCHHHHHHHHHHHC
Q ss_conf             988888772899999999857
Q gi|254781047|r   70 YLHGDVGQGKSMLMNLFFALV   90 (404)
Q Consensus        70 YL~G~VG~GKT~LMdlFy~~l   90 (404)
                      =|-|++|.|||-|++.+-..+
T Consensus         3 GitG~pGaGKStLi~~l~~~~   23 (148)
T cd03114           3 GITGVPGAGKSTLIDALITAL   23 (148)
T ss_pred             EECCCCCCCHHHHHHHHHHHH
T ss_conf             625899787899999999999


No 373
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D; InterPro: IPR011776    This entry represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (IPR011775 from INTERPRO), this subunit is not found in archaea.; GO: 0005524 ATP binding, 0016851 magnesium chelatase activity, 0015995 chlorophyll biosynthetic process.
Probab=73.87  E-value=3.2  Score=21.48  Aligned_cols=105  Identities=22%  Similarity=0.358  Sum_probs=65.3

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHH---------HHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCHHH----
Q ss_conf             86499888887728999999998578111468---------8899999999999999713112246--65578078----
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCR---------LHFYEFMKDVHSRIIMYRKKIEFGE--ILESDPIP----  130 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R---------~HFh~FM~~ih~~l~~~~~~~~~~~--~~~~dpl~----  130 (404)
                      ..||-|-|.+|+|||-|.+.|-+.||.....-         --=|+|--+...|+.+..+-..+.-  ...+-|+-    
T Consensus        17 lgGv~I~~r~Gtgk~al~ral~~~Lp~~~~~~g~~i~~~~PA~P~~W~~~~~ER~~~~~GlsD~~~~~~~~~~p~~~lP~   96 (705)
T TIGR02031        17 LGGVAIRARAGTGKTALARALAEILPPIEELEGSIISNADPAEPDEWEDDLDERIEEEAGLSDSEVKVVIVKAPFVELPL   96 (705)
T ss_pred             HCCEEEECCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEECCC
T ss_conf             05455416777388999999998588874326620147888887323445654233204776662204650564102589


Q ss_pred             ----------------------HHHHHHHCCCC--EEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             ----------------------99999961387--999842320471358889999999985496899
Q gi|254781047|r  131 ----------------------LVASSIALESR--VLCFDEFMITNIADAIILSRLFAALFSHGCIIV  174 (404)
Q Consensus       131 ----------------------~va~~l~~~~~--lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV  174 (404)
                                            .+=..|..+..  ||.+|+...   -|.-+..+|++.| +.|.++|
T Consensus        97 ~vtedrL~G~iDve~sl~~G~~V~~~GlL~~A~~gvlyvd~~~l---ld~~~~n~l~~AL-~~G~~~v  160 (705)
T TIGR02031        97 GVTEDRLLGGIDVEESLASGQRVLQPGLLDEANRGVLYVDSLNL---LDDSLVNRLLDAL-DEGVVIV  160 (705)
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEECCCHHHCCCCCEECCCHHH---HHHHHHHHHHHHH-HCCCEEE
T ss_conf             87320302640020146878254407603116897043154541---1068999999886-5497688


No 374
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos).  The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis.  In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains.  However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=73.68  E-value=7.2  Score=19.22  Aligned_cols=115  Identities=18%  Similarity=0.239  Sum_probs=66.0

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH----------H-------HHHH--HHH----HHHHHHC-CCCCCC
Q ss_conf             64998888877289999999985781114688899----------9-------9999--999----9999713-112246
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY----------E-------FMKD--VHS----RIIMYRK-KIEFGE  122 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh----------~-------FM~~--ih~----~l~~~~~-~~~~~~  122 (404)
                      .=+=|-|+-|.|||-||.+..-..+... -++.|+          +       |+-+  ...    .+.-..+ .....-
T Consensus        27 Ei~~liG~nGaGKSTll~~l~G~~~p~~-G~I~~~G~~~~~~~~~~~~~~~i~~vp~~r~~~~l~~~~~v~en~~~~~~L  105 (182)
T cd03215          27 EIVGIAGLVGNGQTELAEALFGLRPPAS-GEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSLL  105 (182)
T ss_pred             CEEEEECCCCCCCCHHHHHHCCCCCCCC-CEEEECCEECCCCCHHHHHHCCEEEEEHHHHHCCCCCCCCHHHHHHCCCCC
T ss_conf             6999988899992637787669867887-759999999886499999978969960207662567899099995185579


Q ss_pred             CCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf             65578078999999613879998423-2047135888999999998549689981786867
Q gi|254781047|r  123 ILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPE  182 (404)
Q Consensus       123 ~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~  182 (404)
                      ++..----.+|..++.+.+||.+||= -=-|+.....+-+++..+-++|..+|.+|...++
T Consensus       106 SGG~~Qrv~lAral~~~p~llllDEPT~gLD~~~~~~i~~~i~~l~~~g~tvi~isHdl~~  166 (182)
T cd03215         106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDE  166 (182)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf             9899999999999971999999868754589999999999999999789999999687999


No 375
>KOG0057 consensus
Probab=73.64  E-value=7.2  Score=19.22  Aligned_cols=21  Identities=14%  Similarity=0.305  Sum_probs=9.7

Q ss_pred             EECCCCCCHHHHHHHHHHHCC
Q ss_conf             888887728999999998578
Q gi|254781047|r   71 LHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        71 L~G~VG~GKT~LMdlFy~~l~   91 (404)
                      .-|-.+.|--.+++.|.-.+.
T Consensus       285 ~~~~mtvgdlv~~n~l~~qL~  305 (591)
T KOG0057         285 AAGKMTVGDLVMVNSLLFQLS  305 (591)
T ss_pred             HHCCCCCCCHHHHHHHHHHHH
T ss_conf             420565240156899999997


No 376
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=73.60  E-value=2.5  Score=22.17  Aligned_cols=20  Identities=40%  Similarity=0.605  Sum_probs=16.6

Q ss_pred             EEEECCCCCCHHHHHHHHHH
Q ss_conf             99888887728999999998
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFA   88 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~   88 (404)
                      +=|.|++|.|||.+.+.|-+
T Consensus         2 igiTG~igSGKStv~~~l~~   21 (179)
T cd02022           2 IGLTGGIGSGKSTVAKLLKE   21 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHH
T ss_conf             88637875789999999998


No 377
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=73.51  E-value=3.1  Score=21.54  Aligned_cols=16  Identities=31%  Similarity=0.715  Sum_probs=7.1

Q ss_pred             EECCCCCCHHHHHHHH
Q ss_conf             8888877289999999
Q gi|254781047|r   71 LHGDVGQGKSMLMNLF   86 (404)
Q Consensus        71 L~G~VG~GKT~LMdlF   86 (404)
                      |+|+.|.|||.|+|..
T Consensus        35 I~G~TGAGKSTIlDAI   50 (1047)
T PRK10246         35 ITGPTGAGKTTLLDAI   50 (1047)
T ss_pred             EECCCCCCHHHHHHHH
T ss_conf             8899999889999999


No 378
>PRK10536 hypothetical protein; Provisional
Probab=73.29  E-value=2.5  Score=22.19  Aligned_cols=134  Identities=16%  Similarity=0.251  Sum_probs=71.3

Q ss_pred             CEEEEECCCCCCHHHHHHHHH-HHCCCC---------------HH-------HHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             649988888772899999999-857811---------------14-------6888999999999999997131122466
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFF-ALVPIE---------------KK-------CRLHFYEFMKDVHSRIIMYRKKIEFGEI  123 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy-~~l~~~---------------~K-------~R~HFh~FM~~ih~~l~~~~~~~~~~~~  123 (404)
                      .=+...|+.|+|||+|--..- +.+..+               ++       ..--+.-||.-+.+-|++.-+.......
T Consensus        75 ~ivf~~GpAGTGKT~lA~a~Al~~l~~~~~~kIIltRP~V~~ge~lGfLPGdl~EK~~Pyl~Pi~D~L~~~lg~~~~~~~  154 (262)
T PRK10536         75 QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGASFMQYC  154 (262)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf             83999899987589999999999998588868999667875676667698987998878887899999999685999999


Q ss_pred             -------CCCCHHHHHHHHHHCCCCEEEEEEEEECCCHHH-HHHHHHHHHHHHCCCEEEEECCCCHHHHH---CCCCCHH
Q ss_conf             -------557807899999961387999842320471358-88999999998549689981786867752---3874056
Q gi|254781047|r  124 -------LESDPIPLVASSIALESRVLCFDEFMITNIADA-IILSRLFAALFSHGCIIVMTSNFIPENLY---KDEINRN  192 (404)
Q Consensus       124 -------~~~dpl~~va~~l~~~~~lLCfDEF~V~DiaDA-mil~rl~~~lf~~gv~lV~TSN~~P~dLY---~~GLqR~  192 (404)
                             ..--|+..+=-.-. +-.++-+||.|=..+... |+|.|     +..|..+|.|-...-.||-   +|||.  
T Consensus       155 ~~~e~G~Iei~PlafmRGrTf-~na~IIvDEaQN~T~~qmk~iLTR-----iG~~SKiVi~GD~~Q~Dl~~~~~SGL~--  226 (262)
T PRK10536        155 LRPEIGKVEIAPFAYMRGRTF-ENAVVILDEAQNVTAAQMKMFLTR-----LGENVTVIVNGDITQCDLPRGVKSGLS--  226 (262)
T ss_pred             HHHHCCCEEEEEHHHHCCCCC-CCEEEEEEHHHCCCHHHHHHHHHH-----CCCCCEEEEECCCCCCCCCCCCCCCHH--
T ss_conf             873059489987587447751-442899841212899999889854-----259968999688202269999987399--


Q ss_pred             HHHHHHHHHHHC--CEEEECC
Q ss_conf             689899999850--5089804
Q gi|254781047|r  193 VLVSFIELLEKK--LEIISLD  211 (404)
Q Consensus       193 ~FlPfI~~lk~~--~~V~~l~  211 (404)
                         .+++.++..  +.+++++
T Consensus       227 ---~~~~~l~~~~~i~~i~F~  244 (262)
T PRK10536        227 ---DALERFEEDEMVGIVRFG  244 (262)
T ss_pred             ---HHHHHHCCCCCEEEEECC
T ss_conf             ---999995699965899836


No 379
>pfam05970 DUF889 PIF1 helicase. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated.
Probab=73.21  E-value=2.1  Score=22.58  Aligned_cols=95  Identities=18%  Similarity=0.146  Sum_probs=47.3

Q ss_pred             CCCCCCHHHHHHHHHHHCCCCHH------------HHHH----HHHHHHHHHHHHHHHHCCCCCCCCCCCC-HHHHHHHH
Q ss_conf             88877289999999985781114------------6888----9999999999999971311224665578-07899999
Q gi|254781047|r   73 GDVGQGKSMLMNLFFALVPIEKK------------CRLH----FYEFMKDVHSRIIMYRKKIEFGEILESD-PIPLVASS  135 (404)
Q Consensus        73 G~VG~GKT~LMdlFy~~l~~~~K------------~R~H----Fh~FM~~ih~~l~~~~~~~~~~~~~~~d-pl~~va~~  135 (404)
                      |+-|+|||+|...+.+.+....|            ..+|    .|.|..        +.-.  ..+....+ ....-..+
T Consensus         1 G~AGTGKS~ll~~i~~~l~~~~~~v~vtA~TGiAA~~i~gG~TiHs~~g--------i~~~--~~~~~~~~~~~~~~~~~   70 (418)
T pfam05970         1 GYGGTGKTFLWNALSARIRSRGKIVLNVASSGIAALLLPGGRTAHSRFG--------IPLD--IDEDSTCKIKRGSKLAE   70 (418)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCEEHHHCCC--------CCCC--CCCCCCEEECCCHHHHH
T ss_conf             9798879999999999997689889998968999851699873985269--------8988--77420112133778899


Q ss_pred             HHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHC-------CCEEEEEC
Q ss_conf             9613879998423204713588899999999854-------96899817
Q gi|254781047|r  136 IALESRVLCFDEFMITNIADAIILSRLFAALFSH-------GCIIVMTS  177 (404)
Q Consensus       136 l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~-------gv~lV~TS  177 (404)
                      ...++++|-+||.---+..=-..|.+.++.+...       |+-+|++-
T Consensus        71 ~~~~~~vLIIDEiSMv~~~lfd~id~~lr~i~~~~~~~PFGGiqvIl~G  119 (418)
T pfam05970        71 LLKKASLIIWDEAPMTHRHCFEALDRTLRDILKNTDDKPFGGKTVVLGG  119 (418)
T ss_pred             HHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC
T ss_conf             8740879998541135789999999999998712787677974799824


No 380
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily.  Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus.  Arl5 is developmentally regulated during embryogenesis in mice.  Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion.  Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library.  It is found in brain, heart, lung, cartilage, and kidney.  No function has been assigned for Arl8 to date.
Probab=72.89  E-value=4.2  Score=20.68  Aligned_cols=35  Identities=26%  Similarity=0.491  Sum_probs=23.0

Q ss_pred             HHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             256643102466666688649988888772899999999
Q gi|254781047|r   49 IFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLFF   87 (404)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlFy   87 (404)
                      +|+|+|+....++.   - =|-+-|..|.|||-|+.-+-
T Consensus         2 ~~~~~~~~~~~~k~---~-KililG~~~sGKTsil~~l~   36 (174)
T cd04153           2 LFSSLWSLFFPRKE---Y-KVIIVGLDNAGKTTILYQFL   36 (174)
T ss_pred             CHHHHHHHHCCCCE---E-EEEEECCCCCCHHHHHHHHH
T ss_conf             35899987658977---9-99999899998899999997


No 381
>KOG0478 consensus
Probab=72.86  E-value=7.5  Score=19.10  Aligned_cols=122  Identities=19%  Similarity=0.232  Sum_probs=63.2

Q ss_pred             CCCCHHHHHHHCCCCCCCCC----CCCEEEEECCCCCCHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             33322566431024666666----88649988888772899999999857811----14688899999999999999713
Q gi|254781047|r   45 QEQGIFSWLWNLRGIKRKYC----SMQGIYLHGDVGQGKSMLMNLFFALVPIE----KKCRLHFYEFMKDVHSRIIMYRK  116 (404)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~----~~kGlYL~G~VG~GKT~LMdlFy~~l~~~----~K~R~HFh~FM~~ih~~l~~~~~  116 (404)
                      .+++++-.+|+..++.....    .-=-|.|-|++|+|||-|+...+..+|-.    .|.--         ..-|..   
T Consensus       437 vKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsS---------avGLTa---  504 (804)
T KOG0478         437 VKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSS---------AVGLTA---  504 (804)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCC---------HHCCEE---
T ss_conf             66667788756876322334442455228994699867899999999747754040587630---------220035---


Q ss_pred             CCCCCCCCCCCH-----HHHHHHHHHCCCCEEEEEEEEEC-CCHHHHHHHHHHHH--HHHCCCEEEEECCCCHHHHH
Q ss_conf             112246655780-----78999999613879998423204-71358889999999--98549689981786867752
Q gi|254781047|r  117 KIEFGEILESDP-----IPLVASSIALESRVLCFDEFMIT-NIADAIILSRLFAA--LFSHGCIIVMTSNFIPENLY  185 (404)
Q Consensus       117 ~~~~~~~~~~dp-----l~~va~~l~~~~~lLCfDEF~V~-DiaDAmil~rl~~~--lf~~gv~lV~TSN~~P~dLY  185 (404)
                            ...+||     +..-..-++++.-+.|+|||-=- |-+-+++. ..++.  +---..-+|+|=|.-+.=|-
T Consensus       505 ------yVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLh-EvMEQQTvSIAKAGII~sLNAR~SVLA  574 (804)
T KOG0478         505 ------YVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLH-EVMEQQTLSIAKAGIIASLNARCSVLA  574 (804)
T ss_pred             ------EEEECCCCCEEEEECCCEEECCCCEEECHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCEEEECCCCCEEEE
T ss_conf             ------6776576554665048489728965771123333277889999-999876311743022342166530344


No 382
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=72.80  E-value=4  Score=20.86  Aligned_cols=27  Identities=33%  Similarity=0.501  Sum_probs=23.4

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             886499888887728999999998578
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      .--.+-|+|+-|.|||-||.++|....
T Consensus        36 aGECvvL~G~SG~GKStllr~LYaNY~   62 (235)
T COG4778          36 AGECVVLHGPSGSGKSTLLRSLYANYL   62 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf             750799668988768899999985147


No 383
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=72.78  E-value=7.6  Score=19.09  Aligned_cols=69  Identities=12%  Similarity=0.179  Sum_probs=40.9

Q ss_pred             CHHHHHHHHC----CHHHHHHHHH------HCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHC
Q ss_conf             1999852102----4689999985------37889981898787246389998999999982289828998078978801
Q gi|254781047|r  278 SFFDLCDRPL----SANDFVEIAN------RFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLF  347 (404)
Q Consensus       278 ~F~eLC~~~l----g~~DYi~Ia~------~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~  347 (404)
                      ++.++-+-|+    .+.|.-....      .++.|+|+-.=+ +..+......+..+.+......+-|++||.....++.
T Consensus       290 TYAeIMgVPV~VV~dp~eL~~AL~~lkdka~~DLILIDTAGR-S~RD~~~I~EL~~~l~~~~p~ev~LVLSATTK~~DL~  368 (436)
T PRK11889        290 DYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGK-NYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMI  368 (436)
T ss_pred             HHHHHHCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHH
T ss_conf             999984994399688899999999876336888899929898-8468999999999985127771699997889989999


No 384
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=72.65  E-value=7.6  Score=19.07  Aligned_cols=25  Identities=32%  Similarity=0.389  Sum_probs=21.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             4998888877289999999985781
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      =+=|-|+-|+|||-|+.+....++.
T Consensus        35 ~vaivG~nGsGKSTL~k~l~Gl~~p   59 (279)
T PRK13635         35 WVAIVGHNGSGKSTLAKLLNGLLLP   59 (279)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf             9999999996599999999728888


No 385
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=72.34  E-value=7.7  Score=19.02  Aligned_cols=133  Identities=16%  Similarity=0.141  Sum_probs=70.0

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHHH--------HHHHHHHHHHHHHHHHHHHC---------------------
Q ss_conf             8649988888772899999999857811146--------88899999999999999713---------------------
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKC--------RLHFYEFMKDVHSRIIMYRK---------------------  116 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~--------R~HFh~FM~~ih~~l~~~~~---------------------  116 (404)
                      |-.+-++|+-|.||..+--.|-..+-+....        =---|-|+..-|-.++...-                     
T Consensus        21 ~HA~Lf~Gp~G~Gk~~lA~~~A~~llC~~~~~~~~~Cg~C~sC~~~~~~~HPD~~~i~Pe~~~~~~~~~~~~~~~~~~~~  100 (342)
T PRK06964         21 PHALLLHGQAGIGKLAFAQHLAQGLLCETPQPNGEPCGTCAACTWFAQGNHPDYRIVRPEALAAEAPGAADDAKAADADE  100 (342)
T ss_pred             HEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCHHCCCCCCCCCHHHHHHHHH
T ss_conf             30576579998679999999999983899998889786777788886279997455340021022333210010111222


Q ss_pred             --CCC--CCCCCCCCHHHHHHHHHH-----CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCC
Q ss_conf             --112--246655780789999996-----13879998423204713588899999999854968998178686775238
Q gi|254781047|r  117 --KIE--FGEILESDPIPLVASSIA-----LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKD  187 (404)
Q Consensus       117 --~~~--~~~~~~~dpl~~va~~l~-----~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~  187 (404)
                        +..  ......-|-+..+.+.+.     +.++|.-+|..+--+.+-|==|=+.++.==. ++++|.+|+.+       
T Consensus       101 ~~~~~~~~~~~I~idqiR~l~~~l~~~~~~g~~kVviI~~Ae~mn~~aaNalLK~LEEPp~-~~~~iL~~~~~-------  172 (342)
T PRK06964        101 GGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYPAEALNVAAANALLKTLEEPPP-GVVFLLVSARI-------  172 (342)
T ss_pred             HCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCC-CEEEEEEECCH-------
T ss_conf             1012356556454999999999970075458844999827787389999999997237987-84899986992-------


Q ss_pred             CCCHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf             74056689899999850508980473
Q gi|254781047|r  188 EINRNVLVSFIELLEKKLEIISLDSG  213 (404)
Q Consensus       188 GLqR~~FlPfI~~lk~~~~V~~l~~~  213 (404)
                          ++.+|   .|..+|..+.+...
T Consensus       173 ----~~llp---TI~SRcq~~~~~~~  191 (342)
T PRK06964        173 ----DRLLP---TILSRCRQWPMTVP  191 (342)
T ss_pred             ----HHCCH---HHHHCCEEECCCCC
T ss_conf             ----54836---88767643028995


No 386
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters.  This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc.  The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor.  The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri.  Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=72.30  E-value=7.8  Score=19.02  Aligned_cols=26  Identities=27%  Similarity=0.410  Sum_probs=21.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             64998888877289999999985781
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      .=+-|=|+=|.|||-||.+..-.++.
T Consensus        26 e~~~liGpNGaGKSTllk~i~Gl~~p   51 (213)
T cd03235          26 EFLAIVGPNGAGKSTLLKAILGLLKP   51 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf             89999999998699999999768788


No 387
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional
Probab=72.29  E-value=7.8  Score=19.01  Aligned_cols=54  Identities=20%  Similarity=0.285  Sum_probs=46.8

Q ss_pred             HHHHHHHHHCCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf             789999996138799984232-047135888999999998549689981786867
Q gi|254781047|r  129 IPLVASSIALESRVLCFDEFM-ITNIADAIILSRLFAALFSHGCIIVMTSNFIPE  182 (404)
Q Consensus       129 l~~va~~l~~~~~lLCfDEF~-V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~  182 (404)
                      -..+|..++.+-+||++||-- =-|+...-.+-.++..+-++|.+++.||-...+
T Consensus       144 rl~ia~al~~~P~lliLDEPT~GLDp~~r~~i~~~i~~l~~~G~TillttH~l~E  198 (304)
T PRK13537        144 RLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEE  198 (304)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
T ss_conf             9999999837999999938866789999999999999999689999998884899


No 388
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=72.27  E-value=3.2  Score=21.44  Aligned_cols=31  Identities=29%  Similarity=0.426  Sum_probs=24.8

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf             6688649988888772899999999857811
Q gi|254781047|r   63 YCSMQGIYLHGDVGQGKSMLMNLFFALVPIE   93 (404)
Q Consensus        63 ~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~   93 (404)
                      ....+.+-++|.+|+|||-+|.-+...+-..
T Consensus       182 ~sE~qH~li~GTtGtGKS~~ir~LL~qIR~R  212 (732)
T PRK13700        182 DSEIQNFCLHGTVGAGKSEVIRRLANYARQR  212 (732)
T ss_pred             CCHHHEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             5203126774688888999999999999972


No 389
>PRK13542 consensus
Probab=72.02  E-value=7.9  Score=18.97  Aligned_cols=25  Identities=28%  Similarity=0.491  Sum_probs=21.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             4998888877289999999985781
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      =+-|-|+-|.|||-||.+..-.++.
T Consensus        46 i~~liGpNGaGKTTLlk~l~Gll~p   70 (224)
T PRK13542         46 LLQVMGPNGSGKTSLLRVLSGLMPP   70 (224)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf             9999999999999999999579788


No 390
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=72.00  E-value=4.6  Score=20.46  Aligned_cols=28  Identities=25%  Similarity=0.478  Sum_probs=23.5

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf             8649988888772899999999857811
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIE   93 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~   93 (404)
                      .-.+.|-|+-|+|||+|-..+-..+.++
T Consensus        97 KSNILLiGPTGsGKTlLAqTLAk~LnVP  124 (408)
T COG1219          97 KSNILLIGPTGSGKTLLAQTLAKILNVP  124 (408)
T ss_pred             ECCEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             0317998889975779999999984898


No 391
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=71.98  E-value=3.3  Score=21.41  Aligned_cols=82  Identities=16%  Similarity=0.220  Sum_probs=39.7

Q ss_pred             CEE-EEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf             649-98888877289999999985781114688899-9999999999997131122466557807899999961387999
Q gi|254781047|r   67 QGI-YLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY-EFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC  144 (404)
Q Consensus        67 kGl-YL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh-~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC  144 (404)
                      ||+ .+-|+.|.|||-.|..+.+.++...++++--- +--..+|..-...-.+...+ ....+--..+...|-.+-++|+
T Consensus         1 ~GliLitG~TGSGKTTtl~all~~i~~~~~~~IiTiEDPiE~~~~~~~~~i~q~e~g-~~~~sf~~~lr~aLR~~PDvI~   79 (198)
T cd01131           1 RGLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVG-LDTLSFENALKAALRQDPDVIL   79 (198)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCCCEEEEECCCC-CCCCCHHHHHHHHHHHCCCEEE
T ss_conf             938999899999799999999985363788369996473775236764488733307-8863799999999854888575


Q ss_pred             EEEEE
Q ss_conf             84232
Q gi|254781047|r  145 FDEFM  149 (404)
Q Consensus       145 fDEF~  149 (404)
                      +.|.-
T Consensus        80 vGEiR   84 (198)
T cd01131          80 VGEMR   84 (198)
T ss_pred             CCCCC
T ss_conf             27778


No 392
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=71.94  E-value=7.9  Score=18.96  Aligned_cols=135  Identities=16%  Similarity=0.166  Sum_probs=77.8

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHHHHHHHCCCCC----------CCCCCC
Q ss_conf             886499888887728999999998578--------11146888999999999999997131122----------466557
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVP--------IEKKCRLHFYEFMKDVHSRIIMYRKKIEF----------GEILES  126 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~--------~~~K~R~HFh~FM~~ih~~l~~~~~~~~~----------~~~~~~  126 (404)
                      ..+=+-|-|+.|+|||--.-.|.-..+        +..=||+-=-    .+..++++.-+..-+          .....+
T Consensus        64 ~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAAr----svA~RvAeel~~~~G~~VGY~iRfe~~~s~~  139 (845)
T COG1643          64 QNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAAR----SVAERVAEELGEKLGETVGYSIRFESKVSPR  139 (845)
T ss_pred             HCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHH----HHHHHHHHHHCCCCCCEEEEEEEEECCCCCC
T ss_conf             697899867998875878899999600166875996584389999----9999999983898676543799962267877


Q ss_pred             CHHH---------HHH-HHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCC--CEEEEECCCCHHHHHCCCCCHHHH
Q ss_conf             8078---------999-9996138799984232047135888999999998549--689981786867752387405668
Q gi|254781047|r  127 DPIP---------LVA-SSIALESRVLCFDEFMITNIADAIILSRLFAALFSHG--CIIVMTSNFIPENLYKDEINRNVL  194 (404)
Q Consensus       127 dpl~---------~va-~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~g--v~lV~TSN~~P~dLY~~GLqR~~F  194 (404)
                      ..|+         .+- +-+.+++.++-|||||=.-+.-..+|+=+.+-+-.+.  +.+|++|-+.=.+         +|
T Consensus       140 Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~~---------rf  210 (845)
T COG1643         140 TRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAE---------RF  210 (845)
T ss_pred             CEEEEECCHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH---------HH
T ss_conf             146895147999998438020458779970133556888999999999986468870599972535889---------99


Q ss_pred             HHHHHHHHHCCEEEECCCCCHHH
Q ss_conf             98999998505089804731122
Q gi|254781047|r  195 VSFIELLEKKLEIISLDSGQDYR  217 (404)
Q Consensus       195 lPfI~~lk~~~~V~~l~~~~DYR  217 (404)
                      --    .-..|.|++++| +-|+
T Consensus       211 s~----~f~~apvi~i~G-R~fP  228 (845)
T COG1643         211 SA----YFGNAPVIEIEG-RTYP  228 (845)
T ss_pred             HH----HCCCCCEEEECC-CCCC
T ss_conf             97----628998787558-8664


No 393
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=71.84  E-value=4.3  Score=20.65  Aligned_cols=26  Identities=27%  Similarity=0.454  Sum_probs=20.5

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             86499888887728999999998578
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      .+.+.+-|+.|.|||-+|+.+-..+|
T Consensus       149 r~nilI~G~TgsGKTTll~all~~i~  174 (320)
T PRK13894        149 HRNILVIGGTGSGKTTLVNAIINEMV  174 (320)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             87589985888656899999986320


No 394
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=71.58  E-value=8  Score=18.92  Aligned_cols=22  Identities=27%  Similarity=0.389  Sum_probs=11.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHH
Q ss_conf             6783022035302268999999
Q gi|254781047|r  222 SILPIYMTPLNSYNRVLMDKLW  243 (404)
Q Consensus       222 ~~~~~y~~p~~~~~~~~l~~~f  243 (404)
                      ++-++-..|+.++++..+++.+
T Consensus       311 sGrPvl~~plteEa~r~idrf~  332 (593)
T COG2401         311 SGRPVLPTPLTEEAKRYIDRFV  332 (593)
T ss_pred             CCCEEECCCHHHHHHHHHHHHH
T ss_conf             8976303120578999999872


No 395
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains.  The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence.  This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=71.52  E-value=8.1  Score=18.90  Aligned_cols=22  Identities=18%  Similarity=0.375  Sum_probs=17.1

Q ss_pred             EEEECCCCCCHHHHHHHHHHHC
Q ss_conf             9988888772899999999857
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALV   90 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l   90 (404)
                      +=|-|+=|.|||-|+.+....+
T Consensus        25 taivG~NGaGKSTLl~~i~~~l   46 (204)
T cd03240          25 TLIVGQNGAGKTTIIEALKYAL   46 (204)
T ss_pred             EEEECCCCCCHHHHHHHHHHCC
T ss_conf             9999899999999999986304


No 396
>PRK13768 GTPase; Provisional
Probab=71.43  E-value=4.7  Score=20.39  Aligned_cols=25  Identities=20%  Similarity=0.409  Sum_probs=21.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             6499888887728999999998578
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      -|+.+-|+.|.|||-+...+.+.+.
T Consensus         3 ~~~~ViGpaGSGKsT~~~~l~~~l~   27 (253)
T PRK13768          3 YIVFFLGTAGSGKTTLVGALSDWLE   27 (253)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             1899989999988999999999999


No 397
>cd01125 repA Hexameric Replicative Helicase RepA.  RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=71.16  E-value=2.5  Score=22.19  Aligned_cols=16  Identities=38%  Similarity=0.399  Sum_probs=12.9

Q ss_pred             EEECCCCCCHHHHHHH
Q ss_conf             9888887728999999
Q gi|254781047|r   70 YLHGDVGQGKSMLMNL   85 (404)
Q Consensus        70 YL~G~VG~GKT~LMdl   85 (404)
                      -|+|+.|+|||||+=-
T Consensus         5 ~l~g~gG~GKS~lal~   20 (239)
T cd01125           5 ALVAPGGTGKSSLLLV   20 (239)
T ss_pred             EEEECCCCCHHHHHHH
T ss_conf             9980899888999999


No 398
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=71.00  E-value=8.3  Score=18.83  Aligned_cols=25  Identities=28%  Similarity=0.623  Sum_probs=12.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             6499888887728999999998578
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      +-+=++|+-|.|||-++-+.|.-..
T Consensus       290 ~tvAiVG~SG~gKsTI~rLlfRFyD  314 (497)
T COG5265         290 KTVAIVGESGAGKSTILRLLFRFYD  314 (497)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf             4799980788747799999999817


No 399
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=70.89  E-value=7  Score=19.28  Aligned_cols=44  Identities=18%  Similarity=0.278  Sum_probs=34.5

Q ss_pred             HHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHH-HHHHHHHC
Q ss_conf             9999999854968998178686775238740566898-99999850
Q gi|254781047|r  160 SRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVS-FIELLEKK  204 (404)
Q Consensus       160 ~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlP-fI~~lk~~  204 (404)
                      .+|+-..-.+||.||...+.+-++ -.|+-.|+.|+. .|+.|+++
T Consensus        67 ~~l~c~ah~~~vr~v~~~~~~~~~-v~np~~R~~FI~s~V~flrk~  111 (358)
T cd02875          67 DELLCYAHSKGVRLVLKGDVPLEQ-ISNPTYRTQWIQQKVELAKSQ  111 (358)
T ss_pred             HHHHHHHHHCCCEEEEECCCCHHH-CCCHHHHHHHHHHHHHHHHHC
T ss_conf             536214442781899955753664-389899999999999999981


No 400
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=70.41  E-value=8.5  Score=18.75  Aligned_cols=142  Identities=19%  Similarity=0.226  Sum_probs=73.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCH-------HHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCHHHHHHHH----H
Q ss_conf             99888887728999999998578111-------4688899999999999999-7131122466557807899999----9
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALVPIEK-------KCRLHFYEFMKDVHSRIIM-YRKKIEFGEILESDPIPLVASS----I  136 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l~~~~-------K~R~HFh~FM~~ih~~l~~-~~~~~~~~~~~~~dpl~~va~~----l  136 (404)
                      +-+-|.||.|||++--+.-++.+..+       |.++-=    ..++..+.. +..+.   .....--++.+...    .
T Consensus        54 ~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~----~~~~~ai~~~l~~~p---~~~~~~~~e~~~~~L~al~  126 (269)
T COG3267          54 LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSD----ATLLEAIVADLESQP---KVNVNAVLEQIDRELAALV  126 (269)
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHH----HHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHH
T ss_conf             999744777636999999985578851799835763017----889999999840583---2006889999999999999


Q ss_pred             HCCC--CEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEE-EEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEE-EECCC
Q ss_conf             6138--799984232047135888999999998549689-9817868677523874056689899999850508-98047
Q gi|254781047|r  137 ALES--RVLCFDEFMITNIADAIILSRLFAALFSHGCII-VMTSNFIPENLYKDEINRNVLVSFIELLEKKLEI-ISLDS  212 (404)
Q Consensus       137 ~~~~--~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~l-V~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V-~~l~~  212 (404)
                      ++..  .++..||-|.-.. ++|=-=|+|..+-..+... =.-=|-.|      -|++..=+|....+.++|.+ +++..
T Consensus       127 ~~g~r~v~l~vdEah~L~~-~~le~Lrll~nl~~~~~~~l~ivL~Gqp------~L~~~lr~~~l~e~~~R~~ir~~l~P  199 (269)
T COG3267         127 KKGKRPVVLMVDEAHDLND-SALEALRLLTNLEEDSSKLLSIVLIGQP------KLRPRLRLPVLRELEQRIDIRIELPP  199 (269)
T ss_pred             HHCCCCEEEEEHHHHHHCH-HHHHHHHHHHHHCCCCCCCEEEEECCCC------CCCHHHCHHHHHHHHHEEEEEEECCC
T ss_conf             8178873785016766175-4899999988620346672114550780------11435442889854316778995388


Q ss_pred             -----CCHHHHCCCCCC
Q ss_conf             -----311221123678
Q gi|254781047|r  213 -----GQDYRRKEQSIL  224 (404)
Q Consensus       213 -----~~DYR~~~~~~~  224 (404)
                           ..+|=+..+.++
T Consensus       200 ~~~~~t~~yl~~~Le~a  216 (269)
T COG3267         200 LTEAETGLYLRHRLEGA  216 (269)
T ss_pred             CCHHHHHHHHHHHHHCC
T ss_conf             67478999999998505


No 401
>KOG1969 consensus
Probab=70.23  E-value=6  Score=19.74  Aligned_cols=135  Identities=16%  Similarity=0.080  Sum_probs=69.3

Q ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf             6666688649988888772899999999857811-------146888999999999999997131122466557807899
Q gi|254781047|r   60 KRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIE-------KKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLV  132 (404)
Q Consensus        60 ~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~-------~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~v  132 (404)
                      ....++.|=+.|.|++|-|||-|--..-..+--+       --|-.|      .||.++-.+-++.+.. +..       
T Consensus       320 ~s~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~------~v~~kI~~avq~~s~l-~ad-------  385 (877)
T KOG1969         320 PSKRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAP------MVKEKIENAVQNHSVL-DAD-------  385 (877)
T ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHH------HHHHHHHHHHHHCCCC-CCC-------
T ss_conf             66798400687536887872479999998628548873255543478------8999999988641122-568-------


Q ss_pred             HHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH----HC-CCCCH-------HHHHHHHHH
Q ss_conf             9999613879998423204713588899999999854968998178686775----23-87405-------668989999
Q gi|254781047|r  133 ASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL----YK-DEINR-------NVLVSFIEL  200 (404)
Q Consensus       133 a~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL----Y~-~GLqR-------~~FlPfI~~  200 (404)
                           ..-.-|-+||.-=.+.|--=+|-    ++.+.... -+|---.|++=    -+ .-|-|       ++|.|+..-
T Consensus       386 -----srP~CLViDEIDGa~~~~Vdvil----slv~a~~k-~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~  455 (877)
T KOG1969         386 -----SRPVCLVIDEIDGAPRAAVDVIL----SLVKATNK-QATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRP  455 (877)
T ss_pred             -----CCCCEEEEECCCCCCHHHHHHHH----HHHHHHCC-HHHCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCHHHHH
T ss_conf             -----88635998424687289999999----99974161-421686632034555304654587789864755533331


Q ss_pred             HHHCCEEEECCCCCHHHH
Q ss_conf             985050898047311221
Q gi|254781047|r  201 LEKKLEIISLDSGQDYRR  218 (404)
Q Consensus       201 lk~~~~V~~l~~~~DYR~  218 (404)
                      |+..|.++++--+.+=|+
T Consensus       456 Lr~~A~ii~f~~p~~s~L  473 (877)
T KOG1969         456 LRPFAEIIAFVPPSQSRL  473 (877)
T ss_pred             CCCCEEEEEECCCCHHHH
T ss_conf             021048999569976689


No 402
>PRK03918 chromosome segregation protein; Provisional
Probab=70.22  E-value=3.9  Score=20.93  Aligned_cols=100  Identities=14%  Similarity=0.285  Sum_probs=50.1

Q ss_pred             HHHHHHHHHCCCCCC--------CCCCEE-EECCEEEEECCCCCCCCCCCHHHHHHH--HCCHHHHHHHHHHCCEEEECC
Q ss_conf             999999986044446--------776327-636808996122021111019998521--024689999985378899818
Q gi|254781047|r  238 LMDKLWAHITKGKKS--------LSLNIS-TEGGYEIHVPFFCSRVSRFSFFDLCDR--PLSANDFVEIANRFDVVIIND  306 (404)
Q Consensus       238 ~l~~~f~~l~~~~~~--------~~~~i~-v~~gR~i~v~~~~~~va~f~F~eLC~~--~lg~~DYi~Ia~~f~ti~I~~  306 (404)
                      ..+..|..+++|.-.        ....+. ...|...++...+||=.   |  ++.-  .+|-++|+  +....++|||.
T Consensus       751 ~an~~~~~lt~g~y~~~~~~~~~~~~~~~~~~~g~~r~~~~LSGGE~---~--~~aLAL~Lals~~~--~~~~~~lflDE  823 (882)
T PRK03918        751 IASEIFEELTEGKYSGVTVKAEENKVKLFVVYEGKERPLGFLSGGER---I--ALGLAFRLALSMYL--AGEISLLILDE  823 (882)
T ss_pred             HHHHHHHHHHCCCCCEEEECCCCCCEEEEEECCCEECCCCCCCHHHH---H--HHHHHHHHHHHHHH--HCCCCEEEEEC
T ss_conf             99999999829986657531466761599935983617777888899---9--99999999999987--14999499879


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCCCE-EEECCCCHHHH
Q ss_conf             98787246389998999999982289828-99807897880
Q gi|254781047|r  307 IPLLKEDRKDWIKRFIMLIDVFYEHKIGL-IISSEENIEDL  346 (404)
Q Consensus       307 VP~l~~~~~d~arRFI~LID~lYd~kv~L-i~sa~~~~~~L  346 (404)
                      +  ++.-..+...+++..+..+=.....+ |+|-...+.+-
T Consensus       824 g--fg~LD~~~~~~~~~~L~~l~~~~~qi~IISH~~el~~~  862 (882)
T PRK03918        824 P--TPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDA  862 (882)
T ss_pred             C--CCCCCHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH
T ss_conf             9--78879899999999999986589989999575789986


No 403
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=69.99  E-value=8.7  Score=18.69  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=14.9

Q ss_pred             EEEECCCCCCHHHHHHHHHHH
Q ss_conf             998888877289999999985
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFAL   89 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~   89 (404)
                      +-|-|.+|.|||.++..+--.
T Consensus        33 ~viaarpg~GKT~f~~~~a~~   53 (271)
T cd01122          33 IILTAGTGVGKTTFLREYALD   53 (271)
T ss_pred             EEEEECCCCCHHHHHHHHHHH
T ss_conf             999968998699999999999


No 404
>TIGR01192 chvA glucan exporter ATP-binding protein; InterPro: IPR005896   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This family contains glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. In general, this protein is in some ways implicated in osmo-regulation and is suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bacterial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmo-adaptaion are related. ; GO: 0005215 transporter activity, 0006810 transport.
Probab=69.82  E-value=8.8  Score=18.67  Aligned_cols=112  Identities=17%  Similarity=0.200  Sum_probs=68.0

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCC----------------HHHHHHHHHHHHH----------------------
Q ss_conf             88649988888772899999999857811----------------1468889999999----------------------
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIE----------------KKCRLHFYEFMKD----------------------  106 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~----------------~K~R~HFh~FM~~----------------------  106 (404)
                      .-+-+=|-||-|-|||-|.||+=.--..+                +..|----.-.++                      
T Consensus       360 AG~TvAIVGPTGAGKTTLiNLLQRVydP~~G~I~IDG~~I~~v~r~SLR~s~ATVFQDAGL~~R~Ir~NI~lG~~~At~~  439 (592)
T TIGR01192       360 AGQTVAIVGPTGAGKTTLINLLQRVYDPKVGQILIDGIDINTVTRESLRKSIATVFQDAGLLNRSIRENIRLGREGATDE  439 (592)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCEEHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCHH
T ss_conf             47568987789971789988775310698654887242400103477887887787310200131233200377778778


Q ss_pred             --------------HHHHHHHHH---CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHH
Q ss_conf             --------------999999971---311224665578078999999613879998423-20471358889999999985
Q gi|254781047|r  107 --------------VHSRIIMYR---KKIEFGEILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFS  168 (404)
Q Consensus       107 --------------ih~~l~~~~---~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~  168 (404)
                                    |.++++.+.   |..++.-++.+--=-.||..+.|+.++|.+||= ---||-.-.=++.=.+.|-+
T Consensus       440 E~~~Aa~aAaA~DFI~~~~~~Y~T~VGERG~~LSGGERQR~AIARAILKNAPILvLDEATSALDVETE~RVK~AiDal~~  519 (592)
T TIGR01192       440 EVVEAAKAAAASDFIEKRLNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRK  519 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             99999975436677886413444001146774777237899999999723884652001221001456789988887521


Q ss_pred             CCCEEEEE
Q ss_conf             49689981
Q gi|254781047|r  169 HGCIIVMT  176 (404)
Q Consensus       169 ~gv~lV~T  176 (404)
                      ...+.|+-
T Consensus       520 ~RTTFIIA  527 (592)
T TIGR01192       520 NRTTFIIA  527 (592)
T ss_pred             CCCEEEEE
T ss_conf             88547762


No 405
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=69.72  E-value=5.9  Score=19.79  Aligned_cols=25  Identities=32%  Similarity=0.421  Sum_probs=21.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             4998888877289999999985781
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      =+-|-|+-|.|||.|++...+..|.
T Consensus         3 livl~GPSG~GK~tl~~~L~~~~~~   27 (182)
T pfam00625         3 PIVLSGPSGVGKSHIKKALLDEYPE   27 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf             6999898999999999999984866


No 406
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=69.70  E-value=3.1  Score=21.56  Aligned_cols=137  Identities=16%  Similarity=0.176  Sum_probs=66.3

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHH--------------H-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf             688649988888772899999999857811146--------------8-8899999999999999713112246655780
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKC--------------R-LHFYEFMKDVHSRIIMYRKKIEFGEILESDP  128 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~--------------R-~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dp  128 (404)
                      .....+||-|-+|+|||.-.-.--..+......              | .+=|+-...+...|..-+.      +.....
T Consensus       291 GtG~cLYISGVPGTGKTATV~eVIr~L~~~~~~~~lp~F~fVEINGMkLt~P~qaY~~L~e~Ltg~k~------~~~~~A  364 (650)
T PTZ00112        291 GTGQILYISGVPGTGKTATVYMVIKELQNKKLKGQLPWFNLFEINGVNLVHPNAAYRVFYKKLFNKKP------PNALNS  364 (650)
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHHHHCCCC------CCHHHH
T ss_conf             86656999789999800369999999999997089998159997363779878899999999848988------867899


Q ss_pred             HHHHHHHHH--CCCCEEEEEEEEECCCHHHHHHHHHHHHHH--HCCCEEEEECCCC--HHHHHC-----CCCCHHHHHHH
Q ss_conf             789999996--138799984232047135888999999998--5496899817868--677523-----87405668989
Q gi|254781047|r  129 IPLVASSIA--LESRVLCFDEFMITNIADAIILSRLFAALF--SHGCIIVMTSNFI--PENLYK-----DEINRNVLVSF  197 (404)
Q Consensus       129 l~~va~~l~--~~~~lLCfDEF~V~DiaDAmil~rl~~~lf--~~gv~lV~TSN~~--P~dLY~-----~GLqR~~FlPf  197 (404)
                      ....-+...  +..-||.+||.-.-=-..--.|-.||++=-  ....++|+-+|+.  |+.|-.     =|++|=.|-|.
T Consensus       365 ~~lL~k~F~~~r~p~VlLvDELD~LvTkkQ~VlYNLFdWPT~~~SkLIVIaIANTMDLPERL~~RVsSRLGltRltF~PY  444 (650)
T PTZ00112        365 YKELDKLFNNNRTPSILIVDEADYIVTKTQKVLFTLFDWPTKKNSKLILIIISNTMDLPYKMKPSCRSRLAFGRLVFSPY  444 (650)
T ss_pred             HHHHHHHHCCCCCCEEEEECHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCEECCCCC
T ss_conf             99999982689971899971577776367745777366889888707999985067860656666555228850043998


Q ss_pred             -----HHHHHHCCE
Q ss_conf             -----999985050
Q gi|254781047|r  198 -----IELLEKKLE  206 (404)
Q Consensus       198 -----I~~lk~~~~  206 (404)
                           .++|+.++.
T Consensus       445 t~~QL~eII~sRL~  458 (650)
T PTZ00112        445 KYQQIEKVIKERLE  458 (650)
T ss_pred             CHHHHHHHHHHHHC
T ss_conf             99999999999862


No 407
>PRK07413 hypothetical protein; Validated
Probab=69.65  E-value=8.3  Score=18.84  Aligned_cols=166  Identities=16%  Similarity=0.149  Sum_probs=90.6

Q ss_pred             EEEEECCCCCCHHHH-HHHHHHHCC----CCHHHHHHHHHHHHH------HHHHHHHHHCC---------CCCCC---CC
Q ss_conf             499888887728999-999998578----111468889999999------99999997131---------12246---65
Q gi|254781047|r   68 GIYLHGDVGQGKSML-MNLFFALVP----IEKKCRLHFYEFMKD------VHSRIIMYRKK---------IEFGE---IL  124 (404)
Q Consensus        68 GlYL~G~VG~GKT~L-MdlFy~~l~----~~~K~R~HFh~FM~~------ih~~l~~~~~~---------~~~~~---~~  124 (404)
                      -|.+|=|-|.|||-= |-+-..++-    ..++.|+..-.||.-      -+..+..++..         .+...   ..
T Consensus        21 lVqVYTGnGKGKTTAAlGlalRA~G~Gl~~~~~~rV~vvQFiKG~~~~~gE~~a~e~l~~~~p~~i~~~~~G~~~~~~~~  100 (382)
T PRK07413         21 QLHVYDGEGKGKSQAALGVVLRTIGLGICEKRQTRVLLLRFLKGPGRAYDEDAAIEALQRGFPHLIDQVRTGRAEFFGAD  100 (382)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCEECCC
T ss_conf             69997689977899999999997348876567865999994727998776688999985059840799861344322689


Q ss_pred             CCCHH--------HHHHHHHH--CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHC--CCEEEEECCCCHHHHHCCCCCHH
Q ss_conf             57807--------89999996--13879998423204713588899999999854--96899817868677523874056
Q gi|254781047|r  125 ESDPI--------PLVASSIA--LESRVLCFDEFMITNIADAIILSRLFAALFSH--GCIIVMTSNFIPENLYKDEINRN  192 (404)
Q Consensus       125 ~~dpl--------~~va~~l~--~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~--gv~lV~TSN~~P~dLY~~GLqR~  192 (404)
                      ..++.        ...|++..  .+++++-+||.-+.=--.-+-+..+++.|-++  .+-+|.|--.+|.+|-.      
T Consensus       101 ~~~~~D~~~A~~gwe~Ak~~i~sg~ydlVVLDEIn~Al~~Gll~~deVl~~L~~RP~~~eVVlTGR~AP~eLIe------  174 (382)
T PRK07413        101 EITKFDRQEAQRGWDIAKGAIASGLYSVVVLDELNPVLDLGLLPVDEVVKTLKSRPEGLEIIITGRAAPQSLLD------  174 (382)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHH------
T ss_conf             99889999999999999999848998989972166784579805999999997099998899959999999998------


Q ss_pred             HHHHHHHHHHHCCEEEECC---CCCHH---H-HCCCCCCCEEEECCCHHHHHHHHHHHHHHCCC
Q ss_conf             6898999998505089804---73112---2-11236783022035302268999999986044
Q gi|254781047|r  193 VLVSFIELLEKKLEIISLD---SGQDY---R-RKEQSILPIYMTPLNSYNRVLMDKLWAHITKG  249 (404)
Q Consensus       193 ~FlPfI~~lk~~~~V~~l~---~~~DY---R-~~~~~~~~~y~~p~~~~~~~~l~~~f~~l~~~  249 (404)
                             .   -=.|-+|.   .+.+-   + .....+-++|--..-..|.+.+.-.+..+..|
T Consensus       175 -------~---ADLVTEMrp~~hp~~~~~~~~~~~~~~I~VYTG~GKGKTTAAlGlAlRA~G~G  228 (382)
T PRK07413        175 -------I---ADLHSEMRAHRRPEASEDGVPFNSSGGIEIYTGEGKGKSTSALGKALQAIGRG  228 (382)
T ss_pred             -------H---HCHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf             -------6---23355257656886553454457889759955899769999999999974499


No 408
>TIGR01618 phage_P_loop phage nucleotide-binding protein; InterPro: IPR006505   These sequences represent an uncharacterised family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of these proteins is unknown..
Probab=69.45  E-value=2.2  Score=22.50  Aligned_cols=116  Identities=15%  Similarity=0.090  Sum_probs=57.8

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCC------------------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             649988888772899999999857811------------------------14688899999999999999713112246
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIE------------------------KKCRLHFYEFMKDVHSRIIMYRKKIEFGE  122 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~------------------------~K~R~HFh~FM~~ih~~l~~~~~~~~~~~  122 (404)
                      --+-|||.+|.|||=+..    .+|.+                        .-.+-|=-++|.|.-.+            
T Consensus        14 ~~~lIYG~~G~GKTS~~K----~l~GktL~l~~D~SSkVL~G~~nvdiim~~~d~~~~~~~~~e~~~~------------   77 (229)
T TIGR01618        14 FRYLIYGKPGLGKTSTIK----YLPGKTLVLSLDKSSKVLAGDENVDIIMADLDDEKPIQEMVEFYKE------------   77 (229)
T ss_pred             CEEEEECCCCCCCCCEEE----ECCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHH------------
T ss_conf             368887589887230566----4588789883678644346899833899860699847899999999------------


Q ss_pred             CCCCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECC-CCHHHHHCCCCCH--HHHHHHHH
Q ss_conf             65578078999999613879998423204713588899999999854968998178-6867752387405--66898999
Q gi|254781047|r  123 ILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSN-FIPENLYKDEINR--NVLVSFIE  199 (404)
Q Consensus       123 ~~~~dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN-~~P~dLY~~GLqR--~~FlPfI~  199 (404)
                               .++..+.+|+.|-+|=           ++.|+...+..-..  .|=| +.|+-=   --||  --|+-.+.
T Consensus        78 ---------~~~~~~~~Y~niViDN-----------is~lq~~~L~~~gr--~~K~~~~p~~q---~Y~~~~~~~~d~~~  132 (229)
T TIGR01618        78 ---------LQNIQAEEYDNIVIDN-----------ISELQKLWLINLGR--EAKNGRSPELQ---HYQKLDLYFLDLLT  132 (229)
T ss_pred             ---------HHCCHHHCCCEEEEEC-----------HHHHHHHHHHHCCC--CCCCCCCCCCC---CHHHHHHHHHHHHH
T ss_conf             ---------7322534576589814-----------27899999984684--42457886500---03688899999999


Q ss_pred             HHHH--CCEEEECCCCCHHHHCCCCC
Q ss_conf             9985--05089804731122112367
Q gi|254781047|r  200 LLEK--KLEIISLDSGQDYRRKEQSI  223 (404)
Q Consensus       200 ~lk~--~~~V~~l~~~~DYR~~~~~~  223 (404)
                      +|++  +-.|+-..-..+--....+|
T Consensus       133 vl~~l~~~~i~~tAwe~~~~~~~e~G  158 (229)
T TIGR01618       133 VLKELKNKNIYVTAWEDTNQLSLESG  158 (229)
T ss_pred             HHHHCCCCEEEEEEEECCCCCCHHHH
T ss_conf             99855898799987656675340114


No 409
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=69.39  E-value=9  Score=18.61  Aligned_cols=108  Identities=15%  Similarity=0.110  Sum_probs=58.5

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE-E
Q ss_conf             998888877289999999985781114688899999999999999713112246655780789999996138799984-2
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFD-E  147 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfD-E  147 (404)
                      +.+.|-.|.|||-|-..++..+......=+|+-                        .|-+..          .||=| .
T Consensus         2 iW~tGLsgsGKTTlA~~l~~~L~~~~~~~~~lD------------------------GD~iR~----------~l~~~lg   47 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD------------------------GDNVRH----------GLNKDLG   47 (149)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC------------------------CHHHHH----------HHCCCCC
T ss_conf             898799999999999999999998699759977------------------------488997----------7365559


Q ss_pred             EEECC-CHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHH-HCCEEEECCCCCHHHHC
Q ss_conf             32047-13588899999999854968998178686775238740566898999998-50508980473112211
Q gi|254781047|r  148 FMITN-IADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLE-KKLEIISLDSGQDYRRK  219 (404)
Q Consensus       148 F~V~D-iaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk-~~~~V~~l~~~~DYR~~  219 (404)
                      |...| ...+..+..+-..|.++|+.+|++-..|.++.      |+..-   +.+. .++-.+.++...+-..+
T Consensus        48 ys~~~R~~n~~r~~~lak~l~~qg~~VIvs~isp~~~~------R~~~r---~~i~~~~y~eIyl~~~le~~~~  112 (149)
T cd02027          48 FSREDREENIRRIAEVAKLLADAGLIVIAAFISPYRED------REAAR---KIIGGGDFLEVFVDTPLEVCEQ  112 (149)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH------HHHHH---HHCCCCCEEEEEECCCHHHHHH
T ss_conf             88788999999999999999837982788416788999------99999---8747776699997187899987


No 410
>KOG0927 consensus
Probab=69.25  E-value=9  Score=18.59  Aligned_cols=46  Identities=20%  Similarity=0.275  Sum_probs=32.5

Q ss_pred             HHHHHHHCCCCEEEEEEEEEC-CCHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf             999999613879998423204-713588899999999854968998178
Q gi|254781047|r  131 LVASSIALESRVLCFDEFMIT-NIADAIILSRLFAALFSHGCIIVMTSN  178 (404)
Q Consensus       131 ~va~~l~~~~~lLCfDEF~V~-DiaDAmil~rl~~~lf~~gv~lV~TSN  178 (404)
                      ..|+.|..+-.||.+||=.-+ |.+.-.-|...+... +++ +||.+|-
T Consensus       231 aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~-d~~-~lVi~sh  277 (614)
T KOG0927         231 ALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY-DRI-ILVIVSH  277 (614)
T ss_pred             HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHC-CCC-EEEEEEC
T ss_conf             9999883499878743875678899999999999853-576-1899935


No 411
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=68.96  E-value=5.4  Score=20.04  Aligned_cols=25  Identities=32%  Similarity=0.486  Sum_probs=18.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             6499888887728999999998578
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      +-+-+-|+.|.|||-||+.+-..+|
T Consensus       145 ~nilVsGgTGSGKTTllnaL~~~i~  169 (323)
T PRK13833        145 LNIVISGGTGSGKTTLANAVIAEIV  169 (323)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             9689991777756899999998640


No 412
>PRK03839 putative kinase; Provisional
Probab=68.69  E-value=7  Score=19.29  Aligned_cols=34  Identities=24%  Similarity=0.394  Sum_probs=23.9

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             9988888772899999999857811146888999999
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMK  105 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~  105 (404)
                      +-|-|.+|+|||-+-.++-+.+..+   -++..++..
T Consensus         3 I~ITGTPGtGKTTva~~La~~lg~~---~i~v~~la~   36 (180)
T PRK03839          3 IAITGTPGVGKTTISKLLAEKLGYE---YVNLRDFAL   36 (180)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCE---EEEHHHHHH
T ss_conf             9997899999899999999976987---987999999


No 413
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=68.49  E-value=9.4  Score=18.49  Aligned_cols=69  Identities=16%  Similarity=0.162  Sum_probs=47.9

Q ss_pred             CCEEEEEEEEE-CC-CHH--HHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCE---EEECCC
Q ss_conf             87999842320-47-135--888999999998549689981786867752387405668989999985050---898047
Q gi|254781047|r  140 SRVLCFDEFMI-TN-IAD--AIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLE---IISLDS  212 (404)
Q Consensus       140 ~~lLCfDEF~V-~D-iaD--Amil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~---V~~l~~  212 (404)
                      +-++-+||+-- -. ..+  --.+.||-..--..|+-||.|+.|+=.|.             |.-|++++.   .+.+.+
T Consensus       640 ~iviiiDe~adlm~~~~k~ve~~i~rLa~~ara~GIHlilatqRps~dV-------------it~ikan~psrIaf~v~s  706 (858)
T COG1674         640 YIVIIIDEYADLMMVAGKELEELIARLAQKGRAAGIHLILATQRPSVDV-------------ITGIKANIPTRIALRLSS  706 (858)
T ss_pred             CEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCH-------------HHHHHHCCCCCEEEEECC
T ss_conf             0899944478886123176999999999978765826999748999504-------------088885387525665168


Q ss_pred             CCHHHHCCC
Q ss_conf             311221123
Q gi|254781047|r  213 GQDYRRKEQ  221 (404)
Q Consensus       213 ~~DYR~~~~  221 (404)
                      ..|+|..-.
T Consensus       707 ~~dsr~il~  715 (858)
T COG1674         707 KIDSRLILG  715 (858)
T ss_pred             CCCEEEEEC
T ss_conf             765256624


No 414
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701    Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=68.39  E-value=4.8  Score=20.36  Aligned_cols=110  Identities=18%  Similarity=0.277  Sum_probs=64.5

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCC-HHH-HHHHHHHH--HH-HHHHHHHHHCCCCCCCCCC-------------
Q ss_conf             688649988888772899999999857811-146-88899999--99-9999999713112246655-------------
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIE-KKC-RLHFYEFM--KD-VHSRIIMYRKKIEFGEILE-------------  125 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~-~K~-R~HFh~FM--~~-ih~~l~~~~~~~~~~~~~~-------------  125 (404)
                      .+-..+-|+|+=|-|||-||.+.|.+.-.. .+- --|=-++.  .. --.++-+.|++.= +-..|             
T Consensus        32 ~aGEcv~L~G~SGaGKSTlLk~lYaNYlp~~G~i~~~H~G~~~DL~~a~pr~vl~vRr~ti-GYVSQFLRViPRvsalev  110 (224)
T TIGR02324        32 NAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTI-GYVSQFLRVIPRVSALEV  110 (224)
T ss_pred             ECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHCCCHHHHHHHHHHHC-CCEEEEEEECCCCCHHHH
T ss_conf             3673588536888767899997663047468677776240476750768457787730033-515553031288672888


Q ss_pred             -CCHHH------------------------------------------HHHHHHHCCCCEEEEEEE-EECCCHHHHHHHH
Q ss_conf             -78078------------------------------------------999999613879998423-2047135888999
Q gi|254781047|r  126 -SDPIP------------------------------------------LVASSIALESRVLCFDEF-MITNIADAIILSR  161 (404)
Q Consensus       126 -~dpl~------------------------------------------~va~~l~~~~~lLCfDEF-~V~DiaDAmil~r  161 (404)
                       ..|+.                                          =||..+..++.+|.+||= ===|-++--..-.
T Consensus       111 V~ePL~~~G~~~~~A~~~A~~LL~rLniPERLW~LpPaTFSGGEqQRVNIARg~i~d~PiLLLdEPTASLd~~nr~vVvE  190 (224)
T TIGR02324       111 VAEPLLERGVPREAARARARELLARLNIPERLWSLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDATNRKVVVE  190 (224)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             87879872895899999999999755740244288788656605899999876525774001135540241142488999


Q ss_pred             HHHHHHHCCCEEE
Q ss_conf             9999985496899
Q gi|254781047|r  162 LFAALFSHGCIIV  174 (404)
Q Consensus       162 l~~~lf~~gv~lV  174 (404)
                      |++..-.+|+.||
T Consensus       191 Li~e~K~~G~Ali  203 (224)
T TIGR02324       191 LIAEAKARGAALI  203 (224)
T ss_pred             HHHHHHHCCCEEE
T ss_conf             9999976597689


No 415
>pfam02283 CobU Cobinamide kinase / cobinamide phosphate guanyltransferase. This family is composed of a group of bifunctional cobalamin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape.
Probab=68.34  E-value=7.1  Score=19.28  Aligned_cols=22  Identities=23%  Similarity=0.276  Sum_probs=15.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHC
Q ss_conf             9988888772899999999857
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALV   90 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l   90 (404)
                      +++-||++.|||-.---.....
T Consensus         1 iLVtGG~rSGKS~~AE~la~~~   22 (166)
T pfam02283         1 ILVTGGARSGKSRFAERLALAS   22 (166)
T ss_pred             CEEECCCCCCHHHHHHHHHHHC
T ss_conf             9886887733899999999855


No 416
>TIGR00634 recN DNA repair protein RecN; InterPro: IPR004604   DNA repair protein RecN is thought to be DNA damage inducible and involved in recombinational processes. The N-terminal region of most of the bacterial RecN proteins sequenced to date contains an ATP/GTP binding domain within an SMC-like motif. SMC-like domains are involved in chromosomal scaffolding and segregation. It is possible that the function of RecN in homologous recombination is either structural or enzymatic or both. RecN may be involved in the proper positioning of the recombining segments of DNA, ensuring normal recombination. The observation that inactivation of this gene leads to a decreased transformation efficiency, as well as increased sensitivity to DNA-damaging agents, may be due to some defect in chromosomal partitioning or positioning during these recombination-dependent processes . The protein may function presynaptically to process double-stranded breaks to produce 3 single-stranded DNA intermediates during recombination. ; GO: 0005524 ATP binding, 0006281 DNA repair, 0006310 DNA recombination.
Probab=68.25  E-value=3.2  Score=21.48  Aligned_cols=19  Identities=16%  Similarity=0.478  Sum_probs=14.9

Q ss_pred             HHHHHHCCEEEECCCCCCC
Q ss_conf             9998537889981898787
Q gi|254781047|r  293 VEIANRFDVVIINDIPLLK  311 (404)
Q Consensus       293 i~Ia~~f~ti~I~~VP~l~  311 (404)
                      -.|+++-.+|||+..|+..
T Consensus       515 ~~LS~~~QV~cvTHlp~vA  533 (605)
T TIGR00634       515 AQLSERKQVLCVTHLPQVA  533 (605)
T ss_pred             HHHHHHCCEEEECCCHHHH
T ss_conf             9985309589981837989


No 417
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=68.25  E-value=9.5  Score=18.46  Aligned_cols=116  Identities=16%  Similarity=0.180  Sum_probs=63.5

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHHHHHHCCC-------------------CC-
Q ss_conf             886499888887728999999998578111----468889999999999999971311-------------------22-
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEK----KCRLHFYEFMKDVHSRIIMYRKKI-------------------EF-  120 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~----K~R~HFh~FM~~ih~~l~~~~~~~-------------------~~-  120 (404)
                      +-.=+||-|+=|.|||-|+-+.---+....    -..-|-+.++...|+.++.+--+.                   .. 
T Consensus        27 ~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~  106 (209)
T COG4133          27 AGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSG  106 (209)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             88779998999875889999997126877775785478873203568888788606534432202988889999973887


Q ss_pred             ------------CCCCCCC-----------HHHHHHHHHHCCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             ------------4665578-----------0789999996138799984232-047135888999999998549689981
Q gi|254781047|r  121 ------------GEILESD-----------PIPLVASSIALESRVLCFDEFM-ITNIADAIILSRLFAALFSHGCIIVMT  176 (404)
Q Consensus       121 ------------~~~~~~d-----------pl~~va~~l~~~~~lLCfDEF~-V~DiaDAmil~rl~~~lf~~gv~lV~T  176 (404)
                                  +-.+..|           -.-.+|+-+.....|=-+||-. --|...--++..+|..=..+|..+++|
T Consensus       107 ~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllt  186 (209)
T COG4133         107 NAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLT  186 (209)
T ss_pred             CHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             52049999997386653446022236468999999999727887166448532249878999999999985279889996


Q ss_pred             CCCC
Q ss_conf             7868
Q gi|254781047|r  177 SNFI  180 (404)
Q Consensus       177 SN~~  180 (404)
                      |--+
T Consensus       187 tHq~  190 (209)
T COG4133         187 THQP  190 (209)
T ss_pred             CCCC
T ss_conf             4775


No 418
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=68.24  E-value=9.5  Score=18.46  Aligned_cols=52  Identities=31%  Similarity=0.392  Sum_probs=35.2

Q ss_pred             HHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHC-CCEEEEECCCCH
Q ss_conf             8999999613879998423-204713588899999999854-968998178686
Q gi|254781047|r  130 PLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSH-GCIIVMTSNFIP  181 (404)
Q Consensus       130 ~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~-gv~lV~TSN~~P  181 (404)
                      -.+|..|+.+-+||.+||= -=-|+.....+-+++..|-+. |+++|.+|-..+
T Consensus       153 v~iAraL~~~P~iLlLDEPtsgLD~~~~~~i~~li~~l~~~~g~TiiivtHdl~  206 (269)
T PRK11831        153 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP  206 (269)
T ss_pred             HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf             999999975999999828756799999999999999999852989999864989


No 419
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=68.18  E-value=9.5  Score=18.45  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=20.2

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             688649988888772899999999
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFF   87 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy   87 (404)
                      ++-+=+.|-|+-|+|||-++.|.-
T Consensus       409 ~~G~t~AlVG~SGsGKSTii~LL~  432 (1467)
T PTZ00265        409 KEGKTYAFVGESGCGKSTILKLIE  432 (1467)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf             389779986688875667999996


No 420
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=68.12  E-value=4  Score=20.85  Aligned_cols=20  Identities=45%  Similarity=0.735  Sum_probs=16.9

Q ss_pred             EEEECCCCCCHHHHHHHHHH
Q ss_conf             99888887728999999998
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFA   88 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~   88 (404)
                      +=|.|+.|+|||.+.+.|-+
T Consensus         5 IgiTG~igsGKStv~~~l~~   24 (199)
T PRK00081          5 IGLTGGIGSGKSTVANIFAE   24 (199)
T ss_pred             EEEECCCCCCHHHHHHHHHH
T ss_conf             99578887779999999998


No 421
>PRK12608 transcription termination factor Rho; Provisional
Probab=68.07  E-value=6  Score=19.74  Aligned_cols=33  Identities=21%  Similarity=0.219  Sum_probs=23.8

Q ss_pred             CEEEEEEE--EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf             79998423--204713588899999999854968998178686775
Q gi|254781047|r  141 RVLCFDEF--MITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL  184 (404)
Q Consensus       141 ~lLCfDEF--~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL  184 (404)
                      -+|.+||=  +|+|.-...           +|-|+..|+-.+|++=
T Consensus       166 ivLLIDERPEEVTdm~r~v-----------~gEVvaSTfD~~~~~h  200 (379)
T PRK12608        166 MVLLIDERPEEVTDMKRSV-----------KGEVYASTFDRPYDRH  200 (379)
T ss_pred             EEEECCCCCHHHHHHHHHC-----------CEEEEEECCCCCHHHH
T ss_conf             9998168935888888623-----------7079997798998999


No 422
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP); InterPro: IPR005292   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This family consists of multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to the ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux reduced its function. The C-terminal domain seems to be highly conserved. ; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=67.86  E-value=3.3  Score=21.40  Aligned_cols=74  Identities=20%  Similarity=0.340  Sum_probs=41.1

Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCC------CCCCCE--EEEECCCCCCH
Q ss_conf             9999999748877898999999999999999861354333225664310246666------668864--99888887728
Q gi|254781047|r    8 SRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRK------YCSMQG--IYLHGDVGQGK   79 (404)
Q Consensus         8 ~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~kG--lYL~G~VG~GK   79 (404)
                      +|.+..++..+++||.--++.|+.=+.-+.     -.-+++-|.|-    ...++      -.-|+|  +=.-|+|||||
T Consensus       610 KRl~~FLS~EEL~P~S~ER~~i~~G~G~~~-----ITv~~aTFTWA----~~~PPTL~~~~~~~P~GALVAVVG~VGCGK  680 (1542)
T TIGR00957       610 KRLRIFLSHEELEPDSIERRTIKPGEGTNS-----ITVKNATFTWA----RDLPPTLNGITFSIPEGALVAVVGQVGCGK  680 (1542)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCEE-----EEEECCEEEEC----CCCCCCCCCCEEECCCCCEEEEECCCCCCH
T ss_conf             999987422048987402411368897026-----88742601103----775595232015448862689875778776


Q ss_pred             HHHHHHHHHHC
Q ss_conf             99999999857
Q gi|254781047|r   80 SMLMNLFFALV   90 (404)
Q Consensus        80 T~LMdlFy~~l   90 (404)
                      |=|+.++..-.
T Consensus       681 SSL~SALLaEM  691 (1542)
T TIGR00957       681 SSLLSALLAEM  691 (1542)
T ss_pred             HHHHHHHHHHH
T ss_conf             89999998632


No 423
>PRK04296 thymidine kinase; Provisional
Probab=67.76  E-value=4.8  Score=20.36  Aligned_cols=70  Identities=11%  Similarity=0.033  Sum_probs=45.1

Q ss_pred             HHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCH
Q ss_conf             96138799984232047135888999999998549689981786867752387405668989999985050898047311
Q gi|254781047|r  136 IALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQD  215 (404)
Q Consensus       136 l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~D  215 (404)
                      ...+++++.+||-|--+-.+   +-.+.+.+-+.|+.+++..      | ..-.+|+.|-+...+|.--=.|..|.+-..
T Consensus        77 ~~~~~dvI~IDEaQFf~~~~---i~~~~~~~~~~~~~Viv~G------L-d~Df~~~~F~~~~~Li~~Ad~V~kl~a~C~  146 (197)
T PRK04296         77 EGGKIDCVLIDEAQFLDKEQ---VVQLAEVVDDLGIPVICYG------L-DTDFRGEPFEGSPYLLALADKVTELKAICV  146 (197)
T ss_pred             CCCCCCEEEECCHHCCCHHH---HHHHHHHHHHCCCEEEEEE------E-CCCCCCCCCHHHHHHHHHCCCEEEEEEECC
T ss_conf             04785689972021279899---9999999983185899976------5-033024865439999972680999743977


No 424
>pfam01121 CoaE Dephospho-CoA kinase. This family catalyses the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24. This enzyme uses ATP in its reaction.
Probab=67.48  E-value=4.1  Score=20.77  Aligned_cols=20  Identities=45%  Similarity=0.735  Sum_probs=16.7

Q ss_pred             EEEECCCCCCHHHHHHHHHH
Q ss_conf             99888887728999999998
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFA   88 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~   88 (404)
                      +=|.|+.|.|||.+..+|-+
T Consensus         3 IgiTG~IgsGKStv~~~l~~   22 (179)
T pfam01121         3 VGLTGGIGSGKSTVANLFAD   22 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHH
T ss_conf             99857864789999999998


No 425
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein; InterPro: IPR013505   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=67.30  E-value=5.7  Score=19.89  Aligned_cols=108  Identities=20%  Similarity=0.272  Sum_probs=62.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCC-CCHHHHH----------------------HHHHHHHHH-----------------
Q ss_conf             499888887728999999998578-1114688----------------------899999999-----------------
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVP-IEKKCRL----------------------HFYEFMKDV-----------------  107 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~-~~~K~R~----------------------HFh~FM~~i-----------------  107 (404)
                      =+||-|.=|.|||-+|.|...... ...+-|+                      =|.||-+-.                 
T Consensus        31 m~fL~GHSGaGKST~lkLi~~~~~P~~G~i~~~G~d~~~L~~r~~P~LRr~iG~VFQD~~LL~drtv~dNVa~pL~iiG~  110 (216)
T TIGR00960        31 MVFLVGHSGAGKSTLLKLILGIEKPTRGKIRFSGQDLTRLRGREVPFLRRHIGMVFQDHRLLSDRTVYDNVALPLRIIGV  110 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEECCEEECCHHHHHHCCHHHHHHHHHHHCCC
T ss_conf             79985688860789999998522899860787154210015774673000104267011553116554552433552289


Q ss_pred             -----HHHHHHHHCCCCCCCCCCCCHHH---------HHHHHHHCCCCEEEEEEEEE-CCCHHHHHHHHHHHHHHHCCCE
Q ss_conf             -----99999971311224665578078---------99999961387999842320-4713588899999999854968
Q gi|254781047|r  108 -----HSRIIMYRKKIEFGEILESDPIP---------LVASSIALESRVLCFDEFMI-TNIADAIILSRLFAALFSHGCI  172 (404)
Q Consensus       108 -----h~~l~~~~~~~~~~~~~~~dpl~---------~va~~l~~~~~lLCfDEF~V-~DiaDAmil~rl~~~lf~~gv~  172 (404)
                           ..+....=.+.+.......+|.+         .||..+..+=.||.=||=-= -|.+-+.=+=+||+.+-..|++
T Consensus       111 ~~~~~~~rv~~aL~~VGL~~K~~~lP~~LSGGEQQRv~IARA~V~~P~lLLADEPTGNLD~~~S~~il~Lf~~~n~~G~T  190 (216)
T TIGR00960       111 PGRDINERVSAALEKVGLKGKAHALPVQLSGGEQQRVAIARAVVNKPALLLADEPTGNLDPELSRDILRLFEEFNRAGTT  190 (216)
T ss_pred             CCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf             97426789999987306112124076200485034556644430679701310889887888899999999875037854


Q ss_pred             EEE
Q ss_conf             998
Q gi|254781047|r  173 IVM  175 (404)
Q Consensus       173 lV~  175 (404)
                      +++
T Consensus       191 Vl~  193 (216)
T TIGR00960       191 VLV  193 (216)
T ss_pred             EEE
T ss_conf             777


No 426
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=66.62  E-value=10  Score=18.26  Aligned_cols=124  Identities=10%  Similarity=0.124  Sum_probs=68.9

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHHH----HHH-HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH--HC
Q ss_conf             8649988888772899999999857811146----888-9999999999999971311224665578078999999--61
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKC----RLH-FYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI--AL  138 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~----R~H-Fh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l--~~  138 (404)
                      +.+.-+.|+-|+|||-+.-.|..++-.....    .-| ..-+..++      ........  ...+.+..+...=  ..
T Consensus        20 sHAYLF~G~~G~Gk~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~id~------~~~~i~~~--~i~~~i~~~~~~~~~~~   91 (303)
T PRK07132         20 SHSFLLKSNYNNDLDESILYFLNKFNNLQSLNLNLEELPYNIFLFDI------FDEDLSKE--EFLSAIEKFSFSSFVSN   91 (303)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECC------CCCCHHHH--HHHHHHHHHHHCCCCCC
T ss_conf             61688678998679999999999972998788875456532304133------22200168--89999999973665568


Q ss_pred             CCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf             38799984232047135888999999998549689981786867752387405668989999985050898047
Q gi|254781047|r  139 ESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS  212 (404)
Q Consensus       139 ~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~  212 (404)
                      +++|.-+||.+--..+.|=-|=+.++.-=.+-+.+.+|.|.  +          +-   +..|..||.++++..
T Consensus        92 ~~Kv~IIdea~~lt~~A~NaLLKtLEEPp~~~~fil~t~~~--~----------~i---l~TI~SRCq~~~f~~  150 (303)
T PRK07132         92 QKKILIIKNIEKTSNSSLNALLKTIEEPSKNTYFLLTTKNI--N----------KV---IPTIVSRCQVINVKE  150 (303)
T ss_pred             CEEEEEEECHHHCCHHHHHHHHHHCCCCCCCEEEEEEECCH--H----------HC---CHHHHHCCEEEECCC
T ss_conf             70699981655339999999998703898684899972882--4----------38---377863665663788


No 427
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the  chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=66.60  E-value=10  Score=18.26  Aligned_cols=22  Identities=18%  Similarity=0.327  Sum_probs=15.2

Q ss_pred             EEEECCCCCCHHHH-HHHHHHHC
Q ss_conf             99888887728999-99999857
Q gi|254781047|r   69 IYLHGDVGQGKSML-MNLFFALV   90 (404)
Q Consensus        69 lYL~G~VG~GKT~L-MdlFy~~l   90 (404)
                      +-+-|++|.|||.+ +++.++.+
T Consensus        16 ~vi~a~~g~GKS~~~~~la~~~a   38 (242)
T cd00984          16 IIIAARPSMGKTAFALNIAENIA   38 (242)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHH
T ss_conf             99996899999999999999999


No 428
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=66.41  E-value=10  Score=18.23  Aligned_cols=82  Identities=21%  Similarity=0.238  Sum_probs=60.5

Q ss_pred             HHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEE
Q ss_conf             89999996138799984232047135888999999998549689981786867752387405668989999985050898
Q gi|254781047|r  130 PLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIIS  209 (404)
Q Consensus       130 ~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~  209 (404)
                      +.+...+...++-+..||||=++.+-+.+++.|...  ..++.+|.-.|...=.  .-|-.-+.|+.|-.-... ..++.
T Consensus       204 ~~v~~~~~~rf~~iLvDE~QDtn~~Q~~ll~~la~~--~~~l~~VGD~dQsIY~--frGA~~~ni~~f~~df~~-~~~i~  278 (655)
T COG0210         204 PEVLEALQARFRYILVDEFQDTNPLQYELLKLLAGN--AANLFVVGDDDQSIYG--FRGADPENILDFEKDFPA-AKVIK  278 (655)
T ss_pred             HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCC--CCCEEEECCCCCCEEE--ECCCCCHHHHHHHHHCCC-CCEEE
T ss_conf             478999995689898787778518799999998448--7757998589873676--778783678978763565-54676


Q ss_pred             CCCCCHHHH
Q ss_conf             047311221
Q gi|254781047|r  210 LDSGQDYRR  218 (404)
Q Consensus       210 l~~~~DYR~  218 (404)
                      |.  ..||.
T Consensus       279 Le--~nyRS  285 (655)
T COG0210         279 LE--QNYRS  285 (655)
T ss_pred             CC--CCCCC
T ss_conf             04--24488


No 429
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=66.38  E-value=3.6  Score=21.16  Aligned_cols=24  Identities=25%  Similarity=0.340  Sum_probs=18.7

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf             649988888772899999999857
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALV   90 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l   90 (404)
                      .-+=+-|+||.|||.|..-....+
T Consensus        14 ~~i~v~Gp~GSGKTaLie~~~~~L   37 (202)
T COG0378          14 LRIGVGGPPGSGKTALIEKTLRAL   37 (202)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             899961799867899999999999


No 430
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=66.30  E-value=7.7  Score=19.05  Aligned_cols=24  Identities=33%  Similarity=0.468  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             499888887728999999998578
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      =+.|-|+-|.|||-|++.+.+..|
T Consensus         3 livl~GpsG~GK~tl~~~l~~~~~   26 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             999989998899999999997689


No 431
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=66.17  E-value=6.3  Score=19.61  Aligned_cols=39  Identities=15%  Similarity=0.250  Sum_probs=25.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCH-----HHHHHHHHHHHH
Q ss_conf             499888887728999999998578111-----468889999999
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEK-----KCRLHFYEFMKD  106 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~-----K~R~HFh~FM~~  106 (404)
                      =+-|+|.=|.|||-||+++.=|+-.+.     +...-|+.|...
T Consensus        30 i~li~G~NG~GKTTll~Ai~~~LYG~~~~~~~~~~~~y~~~~~~   73 (650)
T TIGR03185        30 IILIGGLNGAGKTTLLDAIQLGLYGKRAYCSKRGNQSYEQYLHG   73 (650)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf             79997799997899999999995695100345454469999999


No 432
>pfam02456 Adeno_IVa2 Adenovirus IVa2 protein. IVa2 protein can interact with the adenoviral packaging signal and that this interaction involves DNA sequences that have previously been demonstrated to be required for packaging. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter.
Probab=66.13  E-value=5  Score=20.21  Aligned_cols=24  Identities=25%  Similarity=0.202  Sum_probs=18.1

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             864998888877289999999985
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFAL   89 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~   89 (404)
                      |-=.-+||+-|+|||-|+.-.-.+
T Consensus        87 P~I~vVYGPTG~GKSQLlRNlis~  110 (370)
T pfam02456        87 PVIGVVYGPTGCGKSQLLRNLLSC  110 (370)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHC
T ss_conf             449999889987789999998734


No 433
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=66.04  E-value=10  Score=18.19  Aligned_cols=54  Identities=13%  Similarity=0.169  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf             0589999999974-88778989999999999999998613543332256643102466666688649988888772899
Q gi|254781047|r    4 DLVSSRLISLIQD-KKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSM   81 (404)
Q Consensus         4 ~~~~~~y~~~v~~-~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~   81 (404)
                      ..+.+.|+++.+. .++++=+.|.+.+.+.   +..+.+..                     ..+-+-+=-|.|+|||+
T Consensus         8 ~~~~~~~~~l~~~~~gfe~R~~Q~~Ma~~V---~~al~~~~---------------------~~~~l~iEAgTGtGKTl   62 (697)
T PRK11747          8 AQIRQAYKALQEQLPGFIPRAGQRQMIAEV---AKTLAGEY---------------------GRHILVIEAGTGVGKSL   62 (697)
T ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHHHHHH---HHHHHCCC---------------------CCCEEEEECCCCCHHHH
T ss_conf             999999999998688997187899999999---99961666---------------------78669998999720899


No 434
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=66.01  E-value=8.2  Score=18.87  Aligned_cols=110  Identities=18%  Similarity=0.202  Sum_probs=56.6

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH----HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             88649988888772899999999857811146888999----99999999999713112246655780789999996138
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYE----FMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALES  140 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~----FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~  140 (404)
                      ..+-+++-|+.|.|||-+|+..-..+|...  |+|--+    ++.. |.--.+.....+......-++...+-..+-..-
T Consensus       142 ~~~siii~G~t~sGKTt~lnall~~Ip~~~--rivtIEdt~E~~~~-~~n~~~l~~r~~~~~~~~v~~~dll~aalR~rP  218 (312)
T COG0630         142 ARKSIIICGGTASGKTTLLNALLDFIPPEE--RIVTIEDTPELKLP-HENWVQLVTREGESGSSEVSLEDLLRAALRQRP  218 (312)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHCCCCC--CEEEECCCCEECCC-CCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf             699499988888864959999986378522--18995255541478-876589983257776566669999999862399


Q ss_pred             CEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf             7999842320471358889999999985496899817868677
Q gi|254781047|r  141 RVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPEN  183 (404)
Q Consensus       141 ~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~d  183 (404)
                      +-|-++|..-...      .-+|+++-.-...+.+.=.-.|.+
T Consensus       219 d~IivgEvrg~e~------~~~~~a~~tGh~~isT~ha~s~~~  255 (312)
T COG0630         219 DYIIVGELRGREA------FVLFQAMQTGHGTISTIHADSPEL  255 (312)
T ss_pred             CEEEEEEEECHHH------HHHHHHHHCCCCCEEEEECCCHHH
T ss_conf             8699963333779------999999865998216880689999


No 435
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE).  They are clustered together phylogenetically.  MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all.  An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport.  The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=65.81  E-value=11  Score=18.16  Aligned_cols=49  Identities=18%  Similarity=0.205  Sum_probs=32.7

Q ss_pred             HHHHHHHCCCCEEEEEEEEE-CCCHHHHHHHHHHHHHHHC-CCEEEEECCC
Q ss_conf             99999961387999842320-4713588899999999854-9689981786
Q gi|254781047|r  131 LVASSIALESRVLCFDEFMI-TNIADAIILSRLFAALFSH-GCIIVMTSNF  179 (404)
Q Consensus       131 ~va~~l~~~~~lLCfDEF~V-~DiaDAmil~rl~~~lf~~-gv~lV~TSN~  179 (404)
                      .+|..|+.+-+||.+||=-. -|+..+..+-+++..+.+. |+++|.+|..
T Consensus       150 ~iAraL~~~P~llllDEPTs~LD~~~~~~i~~~l~~l~~~~~~tii~itHd  200 (218)
T cd03255         150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHD  200 (218)
T ss_pred             HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             999998559999998188876899999999999999999629899998968


No 436
>PRK00300 gmk guanylate kinase; Provisional
Probab=65.35  E-value=8.1  Score=18.90  Aligned_cols=26  Identities=31%  Similarity=0.331  Sum_probs=22.2

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             64998888877289999999985781
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      +=+.|-|+-|.|||-|++.+.+.-|.
T Consensus         8 ~livisGPSG~GK~tl~~~L~~~~p~   33 (208)
T PRK00300          8 LLIVLSAPSGAGKSTLVRALLERDPN   33 (208)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf             38999999988999999999972998


No 437
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=65.34  E-value=11  Score=18.10  Aligned_cols=24  Identities=29%  Similarity=0.378  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             499888887728999999998578
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      =+-|-|+=|+|||-|+.+..--.+
T Consensus        29 ~~~liG~nGsGKSTll~~i~Gl~~   52 (240)
T PRK09493         29 VVVIIGPSGSGKSTLLRCINKLEE   52 (240)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999999999809999999963899


No 438
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.21  E-value=5.5  Score=19.99  Aligned_cols=27  Identities=19%  Similarity=0.294  Sum_probs=14.8

Q ss_pred             HCCEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             37889981898787246389998999999
Q gi|254781047|r  298 RFDVVIINDIPLLKEDRKDWIKRFIMLID  326 (404)
Q Consensus       298 ~f~ti~I~~VP~l~~~~~d~arRFI~LID  326 (404)
                      .|.||+|+.-  |+..+.-.|+|-|.+--
T Consensus      1021 ~f~tVIlDEA--F~R~s~~~a~~~i~~f~ 1047 (1104)
T COG4913        1021 LFGTVILDEA--FSRSSHVVAGRIIAAFR 1047 (1104)
T ss_pred             CEEEEEECHH--HCCCCHHHHHHHHHHHH
T ss_conf             2036761023--14478788999999999


No 439
>PRK10869 recombination and repair protein; Provisional
Probab=65.18  E-value=5.1  Score=20.19  Aligned_cols=21  Identities=24%  Similarity=0.474  Sum_probs=12.6

Q ss_pred             EEECCCCCCHHHHHHHHHHHC
Q ss_conf             988888772899999999857
Q gi|254781047|r   70 YLHGDVGQGKSMLMNLFFALV   90 (404)
Q Consensus        70 YL~G~VG~GKT~LMdlFy~~l   90 (404)
                      =|-|.-|.|||+|||..--.+
T Consensus        26 viTGETGAGKSill~al~lll   46 (553)
T PRK10869         26 VITGETGAGKSIAIDALGLCL   46 (553)
T ss_pred             EEECCCCCCHHHHHHHHHHHH
T ss_conf             877899987999999999984


No 440
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=65.01  E-value=11  Score=18.06  Aligned_cols=52  Identities=17%  Similarity=0.191  Sum_probs=37.2

Q ss_pred             HHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHH-CCCEEEEECCCC
Q ss_conf             78999999613879998423-20471358889999999985-496899817868
Q gi|254781047|r  129 IPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFS-HGCIIVMTSNFI  180 (404)
Q Consensus       129 l~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~-~gv~lV~TSN~~  180 (404)
                      --.+|..++.+-+||.+||= -=-|+..+..+-.++..|-+ .|+++|++|--.
T Consensus       160 Rv~IArAL~~~P~iLllDEPta~LDp~~~~~i~~~l~~l~~~~g~Til~vtHdl  213 (262)
T PRK09984        160 RVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV  213 (262)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf             999999997199999983886779999999999999999985497999988898


No 441
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin.  In addition to DrrA, the complex includes an integral membrane protein called DrrB.  DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called  P-glycoprotein.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=64.96  E-value=11  Score=18.06  Aligned_cols=52  Identities=19%  Similarity=0.239  Sum_probs=39.6

Q ss_pred             HHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHC-CCEEEEECCCCH
Q ss_conf             8999999613879998423-204713588899999999854-968998178686
Q gi|254781047|r  130 PLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSH-GCIIVMTSNFIP  181 (404)
Q Consensus       130 ~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~-gv~lV~TSN~~P  181 (404)
                      ..+|..++.+-++|++||- -=-|+.....+..++..+-+. |.+++.||...-
T Consensus       140 v~ia~Al~~~P~lliLDEPt~gLDp~~~~~i~~~i~~l~~~~g~tiilssH~l~  193 (220)
T cd03265         140 LEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME  193 (220)
T ss_pred             HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf             999999856999899808866889999999999999999838979999888889


No 442
>PRK08118 topology modulation protein; Reviewed
Probab=64.92  E-value=7.7  Score=19.02  Aligned_cols=26  Identities=35%  Similarity=0.349  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf             49988888772899999999857811
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIE   93 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~   93 (404)
                      =|.|-|.+|.|||.|-.-.-+.+.++
T Consensus         3 rI~IiG~~GsGKSTlAr~L~~~~~ip   28 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIP   28 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             79998899987999999999988969


No 443
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=64.84  E-value=3.2  Score=21.47  Aligned_cols=159  Identities=16%  Similarity=0.153  Sum_probs=79.1

Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf             97005899999999748877898999999999999999861354333225664310246666668864998888877289
Q gi|254781047|r    1 MSLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKS   80 (404)
Q Consensus         1 m~~~~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT   80 (404)
                      ||++.+...|+-.    .+..=-.|..++..|..-   +...         +            -.......|.-|+|||
T Consensus         1 msy~vlark~RP~----~F~e~vGQ~~v~~~L~na---l~~~---------r------------l~haylf~G~rGvGKT   52 (704)
T PRK08691          1 MAYQVLARKWRPK----TFADLVGQEHVVKALQNA---LDEG---------R------------LHHAYLLTGTRGVGKT   52 (704)
T ss_pred             CCCHHHHHHHCCC----CHHHHCCCHHHHHHHHHH---HHHC---------C------------CCCEEEEECCCCCCHH
T ss_conf             9428777651887----475641869999999999---9819---------9------------7523750278987888


Q ss_pred             HHHHHHHHHCCCCHH------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH-----HHCCCCEE
Q ss_conf             999999985781114------------6888999999999999997131122466557807899999-----96138799
Q gi|254781047|r   81 MLMNLFFALVPIEKK------------CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASS-----IALESRVL  143 (404)
Q Consensus        81 ~LMdlFy~~l~~~~K------------~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~-----l~~~~~lL  143 (404)
                      -+--.|-.++.+...            +.+.-..|     -.+.+.....+   .+. |-+..+-+.     ....++|.
T Consensus        53 t~Ari~Ak~lNC~~~~~~~pCg~C~~C~~i~~g~~-----~D~~EiDaAs~---~~v-dd~R~l~~~~~y~P~~~~yKVy  123 (704)
T PRK08691         53 TIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRY-----VDLLEIDAASN---TGI-DNIREVLENAQYAPTAGKYKVY  123 (704)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCC-----CCEEEEECCCC---CCH-HHHHHHHHHCCCCCCCCCEEEE
T ss_conf             99999999967999999997877776787855899-----87477424544---588-9999999853468867853599


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf             98423204713588899999999854968998178686775238740566898999998505089804
Q gi|254781047|r  144 CFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD  211 (404)
Q Consensus       144 CfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~  211 (404)
                      -|||.|--.-.-.=-|=+.++.==.+-++|.+|..  |+.|             -..|-.+|.-+++.
T Consensus       124 iiDEvhmLs~~afNAlLKtLEEPP~~v~FilaTTd--p~Kl-------------p~TIlSRC~~f~l~  176 (704)
T PRK08691        124 IIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTD--PHKV-------------PVTVLSRCLQFVLR  176 (704)
T ss_pred             EEECHHHCCHHHHHHHHHHHCCCCCCEEEEEECCC--HHHC-------------CHHHHHHHHHHCCC
T ss_conf             98315443899999999861479756089985488--4647-------------58999888771026


No 444
>PRK07594 type III secretion system ATPase; Validated
Probab=64.63  E-value=5  Score=20.23  Aligned_cols=26  Identities=23%  Similarity=0.275  Sum_probs=20.3

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             86499888887728999999998578
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      -+=+-|.|+-|+|||.||.+.-....
T Consensus       155 GQR~gIfgg~GvGKTtLl~~i~~~~~  180 (433)
T PRK07594        155 GQRVGIFSAPGVGKSTLLAMLCNAPD  180 (433)
T ss_pred             CCEEEECCCCCCCHHHHHHHHHHCCC
T ss_conf             78742047899985589999984247


No 445
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=64.58  E-value=11  Score=18.01  Aligned_cols=56  Identities=21%  Similarity=0.224  Sum_probs=47.3

Q ss_pred             HHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf             78999999613879998423-204713588899999999854968998178686775
Q gi|254781047|r  129 IPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL  184 (404)
Q Consensus       129 l~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL  184 (404)
                      .-.+|..++.+.++|.+||= ---|...+-.|-.++..|-++|+.+|..|.+.++-.
T Consensus       153 rv~ia~al~~~p~llilDEPTa~Ld~~~~~~l~~~l~~l~~~g~tii~isH~l~~v~  209 (510)
T PRK09700        153 MLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIR  209 (510)
T ss_pred             HHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf             999999998598849987885666867899999998888872871799952367788


No 446
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=64.42  E-value=3.6  Score=21.12  Aligned_cols=21  Identities=24%  Similarity=0.624  Sum_probs=17.9

Q ss_pred             ECCCCCCHHHHHHHHHHHCCC
Q ss_conf             888877289999999985781
Q gi|254781047|r   72 HGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        72 ~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      -|+.|.|||-+...+.+.++.
T Consensus         2 iGpaGSGKTT~~~~l~~~l~~   22 (234)
T pfam03029         2 VGGAGSGKTTFVGALSEILPL   22 (234)
T ss_pred             CCCCCCCHHHHHHHHHHHHHH
T ss_conf             898989889999999999997


No 447
>TIGR00101 ureG urease accessory protein UreG; InterPro: IPR004400 This is a GTP hydrolase for assembly of the nickel metallocentre of urease. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. They play a central role in nitrogen metabolism.; GO: 0005524 ATP binding, 0016151 nickel ion binding.
Probab=64.26  E-value=5.3  Score=20.08  Aligned_cols=24  Identities=29%  Similarity=0.422  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             998888877289999999985781
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      +=+-|+||.|||-|+..+...+..
T Consensus         4 iG~~GPvG~Gktal~e~l~~~~~~   27 (199)
T TIGR00101         4 IGVAGPVGSGKTALIEALTRELAK   27 (199)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             665047776468999999998874


No 448
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=64.22  E-value=6  Score=19.72  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=15.9

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             99888887728999999998578
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      .-|.|+-|.|||.|+|+..=++-
T Consensus        28 ~lI~G~nGsGKSSIldAI~~ALy   50 (908)
T COG0419          28 FLIVGPNGAGKSSILDAITFALY   50 (908)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
T ss_conf             79989999978899999999982


No 449
>KOG1942 consensus
Probab=64.19  E-value=4.7  Score=20.42  Aligned_cols=27  Identities=22%  Similarity=0.278  Sum_probs=21.3

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf             688649988888772899999999857
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALV   90 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l   90 (404)
                      -+-|++.|-|++|+|||-|-=..-+-+
T Consensus        62 maGravLlaGppgtGKTAlAlaisqEL   88 (456)
T KOG1942          62 MAGRAVLLAGPPGTGKTALALAISQEL   88 (456)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             267279973699876568999999974


No 450
>KOG0056 consensus
Probab=64.08  E-value=11  Score=17.95  Aligned_cols=21  Identities=19%  Similarity=0.434  Sum_probs=14.7

Q ss_pred             HHHHHHCCEEEECCCCCHHHH
Q ss_conf             999985050898047311221
Q gi|254781047|r  198 IELLEKKLEIISLDSGQDYRR  218 (404)
Q Consensus       198 I~~lk~~~~V~~l~~~~DYR~  218 (404)
                      .+++|+.-+|+++.+.-|++-
T Consensus       513 fdllkee~eVvd~P~a~pl~~  533 (790)
T KOG0056         513 FDLLKEEPEVVDLPGAPPLKV  533 (790)
T ss_pred             HHHHHCCCHHHCCCCCCCCCC
T ss_conf             998616751113899997330


No 451
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=63.81  E-value=12  Score=17.92  Aligned_cols=26  Identities=27%  Similarity=0.377  Sum_probs=18.8

Q ss_pred             CCEEEEECCCCCCHHHHHHHHH-HHCC
Q ss_conf             8649988888772899999999-8578
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFF-ALVP   91 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy-~~l~   91 (404)
                      ..-+.|-|++|+|||.+---|. +.+.
T Consensus        32 g~~~li~G~~G~GKt~~~~~f~~~~~~   58 (241)
T PRK06067         32 GSLILIEGENDTGKSVLSQQFVWGALN   58 (241)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             908999807998879999999999986


No 452
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=63.73  E-value=12  Score=17.91  Aligned_cols=192  Identities=17%  Similarity=0.100  Sum_probs=92.5

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf             86499888887728999999998578111468889999999999999971311224665578078999999613879998
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCF  145 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCf  145 (404)
                      |+=+-+-|+-|+|||--.          .|.=.||.            .++                     .+.-+++.
T Consensus         1 P~vi~lvGptGvGKTTTi----------aKLAa~~~------------~~~---------------------~~V~lit~   37 (196)
T pfam00448         1 PNVILLVGLQGSGKTTTI----------AKLAAYLK------------KQG---------------------KKVLLVAA   37 (196)
T ss_pred             CEEEEEECCCCCCHHHHH----------HHHHHHHH------------HCC---------------------CEEEEEEC
T ss_conf             969999899999889999----------99999999------------779---------------------92899975


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHCCCEEEE-ECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHCCCCCC
Q ss_conf             423204713588899999999854968998-1786867752387405668989999985050898047311221123678
Q gi|254781047|r  146 DEFMITNIADAIILSRLFAALFSHGCIIVM-TSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSIL  224 (404)
Q Consensus       146 DEF~V~DiaDAmil~rl~~~lf~~gv~lV~-TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DYR~~~~~~~  224 (404)
                      |-|.+-=+----..++.      .|+.+.. .+...|.+.-+++++.-        -.+.++++=+|..         + 
T Consensus        38 Dt~R~gA~eQL~~ya~~------l~v~~~~~~~~~d~~~~~~~~l~~~--------~~~~~D~IlIDTa---------G-   93 (196)
T pfam00448        38 DTFRAAAIEQLKQLAER------LGVPVFGSGTGSDPAAVAFDAVEKA--------KAENYDVVLVDTA---------G-   93 (196)
T ss_pred             CCCCHHHHHHHHHHHHH------CCCEEEECCCCCCHHHHHHHHHHHH--------HHCCCCEEEEECC---------C-
T ss_conf             87768899999999986------3981781487778789999999998--------8468999999899---------9-


Q ss_pred             CEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCEEEE
Q ss_conf             30220353022689999999860444467763276368089961220211110199985210246899999853788998
Q gi|254781047|r  225 PIYMTPLNSYNRVLMDKLWAHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFDVVII  304 (404)
Q Consensus       225 ~~y~~p~~~~~~~~l~~~f~~l~~~~~~~~~~i~v~~gR~i~v~~~~~~va~f~F~eLC~~~lg~~DYi~Ia~~f~ti~I  304 (404)
                         ..|.++.--.++.+++...    ++. ..+++.       ....                +..|...+...|..+=+
T Consensus        94 ---r~~~d~~~~~el~~~~~~~----~~~-~~~LVl-------~a~~----------------~~~~~~~~~~f~~~~~~  142 (196)
T pfam00448        94 ---RLQNDKNLMDELKKIKRVI----APD-EVLLVL-------DATT----------------GQNALNQAKAFNEAVGI  142 (196)
T ss_pred             ---CCCCCHHHHHHHHHHHHHC----CCC-CEEEEE-------ECCC----------------CCCHHHHHHHHHHHCCC
T ss_conf             ---8747677899999998522----873-028998-------5677----------------82137899987600477


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECC-CCHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             189878724638999899999998228982899807-8978801346765313489989887
Q gi|254781047|r  305 NDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSE-ENIEDLFPYKLRKGAFEIQRTVSRL  365 (404)
Q Consensus       305 ~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~-~~~~~L~~~~~~~~~F~f~Rt~SRL  365 (404)
                      +.+   =-...|+++++-.++.++...+.++.+.+. ..+++|       +.|.-+|-++||
T Consensus       143 ~~~---I~TKlDet~~~G~~l~~~~~~~~Pi~~~t~Gq~v~Dl-------~~~~~~~~~~~l  194 (196)
T pfam00448       143 TGV---ILTKLDGDAKGGAALSIAAETGKPIKFIGVGEKIDDL-------EPFDPERFVSRL  194 (196)
T ss_pred             CCE---EEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCHHHC-------CCCCHHHHHHHH
T ss_conf             626---8884057887529998999989697999679981206-------347999999985


No 453
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family; InterPro: IPR004346   This family includes the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration . Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro .    Similar type IV transport systems are also found in other bacteria. This family includes proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding.
Probab=63.31  E-value=6.4  Score=19.54  Aligned_cols=73  Identities=18%  Similarity=0.241  Sum_probs=46.0

Q ss_pred             CCCEEEEEEE--EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCH-HHHHCCCCCHHHHHHHHHHHHHCCEEEECCCC--
Q ss_conf             3879998423--204713588899999999854968998178686-77523874056689899999850508980473--
Q gi|254781047|r  139 ESRVLCFDEF--MITNIADAIILSRLFAALFSHGCIIVMTSNFIP-ENLYKDEINRNVLVSFIELLEKKLEIISLDSG--  213 (404)
Q Consensus       139 ~~~lLCfDEF--~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P-~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~--  213 (404)
                      .--++|+|||  -+.|..=+--++..+..+=++++++|.--+ .| +|+|+=+.-+.       +|++.-..+-+-.+  
T Consensus       754 r~~~~~~DEaw~~l~~p~~~~~i~~~l~t~RK~NG~~v~ATQ-~~Y~d~~~s~i~~~-------~~~~~~T~I~lPn~~a  825 (931)
T TIGR00929       754 RRFLIVIDEAWKLLGDPVFAAKIKDWLKTLRKANGIVVLATQ-SIYNDALESRIADT-------LIEQCATKIFLPNPKA  825 (931)
T ss_pred             CCEEEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCEEEEECC-HHHHHHHCCCHHHH-------HHHHCCCEEECCCCCC
T ss_conf             867998513053326907899999998757660977986300-14777631542468-------8961583432488456


Q ss_pred             --CHHHHC
Q ss_conf             --112211
Q gi|254781047|r  214 --QDYRRK  219 (404)
Q Consensus       214 --~DYR~~  219 (404)
                        .||+..
T Consensus       826 ~~~dy~~~  833 (931)
T TIGR00929       826 DREDYAEG  833 (931)
T ss_pred             CHHHHHHH
T ss_conf             85899985


No 454
>cd01127 TrwB Bacterial conjugation protein TrwB,  ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=63.25  E-value=8.7  Score=18.71  Aligned_cols=29  Identities=21%  Similarity=0.266  Sum_probs=21.7

Q ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             66668864998888877289999999985
Q gi|254781047|r   61 RKYCSMQGIYLHGDVGQGKSMLMNLFFAL   89 (404)
Q Consensus        61 ~~~~~~kGlYL~G~VG~GKT~LMdlFy~~   89 (404)
                      ++....+.+-+.|+.|.|||-.+.-+-.+
T Consensus        37 p~~~e~~H~lv~G~tGsGKT~~i~~li~~   65 (410)
T cd01127          37 PKDAEEAHTMIIGTTGTGKTTQIRELLAS   65 (410)
T ss_pred             CCCHHHCCEEEECCCCCCHHHHHHHHHHH
T ss_conf             86520274799889999889999999999


No 455
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=63.23  E-value=12  Score=17.85  Aligned_cols=72  Identities=18%  Similarity=0.229  Sum_probs=42.8

Q ss_pred             HHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHH-HCCCEEEEECCC-----------------------CHHHH
Q ss_conf             8999999613879998423-2047135888999999998-549689981786-----------------------86775
Q gi|254781047|r  130 PLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALF-SHGCIIVMTSNF-----------------------IPENL  184 (404)
Q Consensus       130 ~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf-~~gv~lV~TSN~-----------------------~P~dL  184 (404)
                      -.+|..|+.+-+||.+||= ---|..-..-+..++..|. +.|+++|.++--                       .|++|
T Consensus       158 VaiArAL~~~P~lLllDEPts~LD~~~r~~l~~~l~~l~~~~g~Tii~VTHD~~eA~~laDrI~Vm~~G~Ivq~GtP~Ei  237 (377)
T PRK11607        158 VALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI  237 (377)
T ss_pred             HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCEEEEEECCEEEEEECHHHH
T ss_conf             99999874499789964875447999999999999999997399999999899999986999999989999999688999


Q ss_pred             HCCCCCH--HHHHHHHHHH
Q ss_conf             2387405--6689899999
Q gi|254781047|r  185 YKDEINR--NVLVSFIELL  201 (404)
Q Consensus       185 Y~~GLqR--~~FlPfI~~l  201 (404)
                      |.++-++  ..|+-...+|
T Consensus       238 y~~P~~~fva~f~G~~N~l  256 (377)
T PRK11607        238 YEHPTTRYSAEFIGSVNVF  256 (377)
T ss_pred             HHCCCCHHHHHHCCCCCEE
T ss_conf             8689985898727935057


No 456
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=63.16  E-value=6.1  Score=19.69  Aligned_cols=20  Identities=35%  Similarity=0.519  Sum_probs=17.5

Q ss_pred             EEEEECCCCCCHHHHHHHHH
Q ss_conf             49988888772899999999
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFF   87 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy   87 (404)
                      =|-|-||=|+|||-|+.|.=
T Consensus        33 iViltGPSGSGKTTLLtLiG   52 (220)
T TIGR02982        33 IVILTGPSGSGKTTLLTLIG   52 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHH
T ss_conf             79843788984688999887


No 457
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462    The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=63.08  E-value=4.8  Score=20.33  Aligned_cols=120  Identities=20%  Similarity=0.271  Sum_probs=64.6

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCC----------------------HHHHHHHHHHHHHHHHHHHHH-HCCCCCCCC
Q ss_conf             649988888772899999999857811----------------------146888999999999999997-131122466
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVPIE----------------------KKCRLHFYEFMKDVHSRIIMY-RKKIEFGEI  123 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~~~----------------------~K~R~HFh~FM~~ih~~l~~~-~~~~~~~~~  123 (404)
                      .-|=+-||-|||||-|-=..-.++.-+                      ..+.+        +-+.+|.. |.+....+-
T Consensus        22 ~PvHl~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd~eL~~~DLvG~~~g~~~~kv--------~DqfihnV~K~~d~~~~~   93 (265)
T TIGR02640        22 YPVHLRGPAGTGKTTLAMHVARKRDRPVVLINGDAELTTSDLVGSYAGYTRKKV--------VDQFIHNVVKLEDIVRQN   93 (265)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEEE--------EECCEEEEECCCCCCCCC
T ss_conf             866744788855689999999736896899865823265442315467522223--------201211134251220026


Q ss_pred             CCCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCC-------------------EEEEECCCCHHHH
Q ss_conf             557807899999961387999842320471358889999999985496-------------------8998178686775
Q gi|254781047|r  124 LESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGC-------------------IIVMTSNFIPENL  184 (404)
Q Consensus       124 ~~~dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv-------------------~lV~TSN~~P~dL  184 (404)
                      =..+||...    .++.-=|-.|||-=+=++--    ++|=+.|+.||                   ..|+|||-.=   
T Consensus        94 W~D~rLt~A----v~eG~TLVYdEF~RskP~~n----NVLLSvlEE~vL~LPg~~~~~~Yv~VhP~FR~IfTSNp~E---  162 (265)
T TIGR02640        94 WVDNRLTLA----VREGFTLVYDEFTRSKPETN----NVLLSVLEEGVLELPGKRGESRYVDVHPEFRVIFTSNPVE---  162 (265)
T ss_pred             CCCCHHHHH----HHCCCEEEECCCCCCCCHHH----HHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEECCCCCC---
T ss_conf             678357899----75697276647578862045----6567555523215888787787225788702463148701---


Q ss_pred             HCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf             238740566898999998505089804
Q gi|254781047|r  185 YKDEINRNVLVSFIELLEKKLEIISLD  211 (404)
Q Consensus       185 Y~~GLqR~~FlPfI~~lk~~~~V~~l~  211 (404)
                      |.| .+-.+     ++|-.++--+.||
T Consensus       163 YAG-Vh~~Q-----DALlDRL~ti~~D  183 (265)
T TIGR02640       163 YAG-VHETQ-----DALLDRLVTISMD  183 (265)
T ss_pred             CCC-CCCHH-----HHHHHHHCCCCCC
T ss_conf             057-67716-----6776644004578


No 458
>pfam11004 DUF2843 Protein of unknown function (DUF2843). This bacterial family of proteins has no known function.
Probab=63.01  E-value=7.8  Score=19.01  Aligned_cols=31  Identities=19%  Similarity=0.292  Sum_probs=17.2

Q ss_pred             CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             28999999998578111468889999999999999
Q gi|254781047|r   78 GKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRII  112 (404)
Q Consensus        78 GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~  112 (404)
                      |++.|+.    .+-+.+.+|-+|-++|+.+|+.|.
T Consensus       181 ~~a~ll~----~LgiTK~~RS~YDh~ML~LHD~mK  211 (281)
T pfam11004       181 LSAWLLH----ALGITKRPRSRYDHLMLQLHDLMK  211 (281)
T ss_pred             HHHHHHH----HHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             5899999----848887878768899999988752


No 459
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=63.00  E-value=12  Score=17.83  Aligned_cols=54  Identities=20%  Similarity=0.231  Sum_probs=45.2

Q ss_pred             HHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf             8999999613879998423-20471358889999999985496899817868677
Q gi|254781047|r  130 PLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPEN  183 (404)
Q Consensus       130 ~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~d  183 (404)
                      -.+|..++.+-++|.+||= ---|+..+.-+-+++..|-++|+.+|..|.+..+-
T Consensus       143 v~ia~al~~~p~ililDEPt~~LD~~~~~~l~~~l~~l~~~g~til~itH~l~~v  197 (491)
T PRK10982        143 IEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEI  197 (491)
T ss_pred             HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
T ss_conf             9999998539988981587345587888999888888774285367862436744


No 460
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=63.00  E-value=5.4  Score=19.99  Aligned_cols=28  Identities=21%  Similarity=0.286  Sum_probs=21.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf             4998888877289999999985781114
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEKK   95 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K   95 (404)
                      -+=+=|.+|.|||.|+.=.-+.+..+.|
T Consensus        36 ~lNfmsspGSGKT~LiEk~~~~~~~~~K   63 (225)
T TIGR00073        36 VLNFMSSPGSGKTTLIEKLIERLDDEVK   63 (225)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             9980258861158999999998457897


No 461
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=62.94  E-value=3  Score=21.64  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             99888887728999999998578
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      +=|+||.|+|||.||.-.-..+.
T Consensus       150 iGLFGGAGVGKTVl~~ELI~Nia  172 (468)
T COG0055         150 IGLFGGAGVGKTVLIQELINNIA  172 (468)
T ss_pred             EEEECCCCCCCEEEHHHHHHHHH
T ss_conf             44423677562010999999999


No 462
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes.  The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch.  Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily.  MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes.  The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis.  All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action.  MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=62.88  E-value=12  Score=17.81  Aligned_cols=97  Identities=18%  Similarity=0.315  Sum_probs=60.4

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHH------HH-CCCCH--HHHHH-H-----------------HHHHHHHHHHHHHHHCC
Q ss_conf             88649988888772899999999------85-78111--46888-9-----------------99999999999997131
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFF------AL-VPIEK--KCRLH-F-----------------YEFMKDVHSRIIMYRKK  117 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy------~~-l~~~~--K~R~H-F-----------------h~FM~~ih~~l~~~~~~  117 (404)
                      ..+.+-|.|+=..|||.+|...-      +. ++++.  +..+- |                 -.||.|+.+        
T Consensus        27 ~~~~~iiTGpN~sGKSt~lk~i~l~~iLAq~G~~vpa~~~~~~~~~d~i~~~i~~~d~~~~~~S~F~~E~~~--------   98 (200)
T cd03280          27 NKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSHMKN--------   98 (200)
T ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCEECCCCCEEEEEECCCCCHHHHHHHHHHHHHH--------
T ss_conf             933999988987750999999999999999777800110047266567888846733666778799999999--------


Q ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHH-HHHHHHHHCCCEEEEECCCCH
Q ss_conf             1224665578078999999613879998423-204713588899-999999854968998178686
Q gi|254781047|r  118 IEFGEILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILS-RLFAALFSHGCIIVMTSNFIP  181 (404)
Q Consensus       118 ~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~-rl~~~lf~~gv~lV~TSN~~P  181 (404)
                                 +..+.+ .+.+-.++.+||+ .=|+..|++-+. .+++.|.+++...+.|+-.+.
T Consensus        99 -----------~~~il~-~~~~~sLvliDE~~~gTn~~eg~~~a~a~l~~l~~~~~~~i~tTH~~e  152 (200)
T cd03280          99 -----------IARILQ-HADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGE  152 (200)
T ss_pred             -----------HHHHHH-HCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf             -----------999998-588888797556668988789999999999999857997999897178


No 463
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=62.79  E-value=6.6  Score=19.46  Aligned_cols=25  Identities=20%  Similarity=0.242  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             4998888877289999999985781
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      =.-|.|+-|.|||-|+|+..=++-.
T Consensus        30 lflI~G~nGsGKSTIlDAI~~aLYG   54 (213)
T cd03279          30 LFLICGPTGAGKSTILDAITYALYG   54 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             8999889999788999999999838


No 464
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=62.69  E-value=5  Score=20.25  Aligned_cols=77  Identities=23%  Similarity=0.271  Sum_probs=42.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf             49988888772899999999857811146-88899999999999999713112246655780789999996138799984
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEKKC-RLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFD  146 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~-R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfD  146 (404)
                      -+-.-|.||||||-|....+..-...+|- -+-|                                            +|
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQAve~--------------------------------------------~d   38 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAVEF--------------------------------------------ND   38 (148)
T ss_pred             EEEEECCCCCCCHHHHHHHHCCHHHHCCCCEEEC--------------------------------------------CC
T ss_conf             0687514565731678886160332100001330--------------------------------------------47


Q ss_pred             EEEECCCH----HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCC
Q ss_conf             23204713----5888999999998549689981786867752387
Q gi|254781047|r  147 EFMITNIA----DAIILSRLFAALFSHGCIIVMTSNFIPENLYKDE  188 (404)
Q Consensus       147 EF~V~Dia----DAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~G  188 (404)
                      +.-+.-++    .-+.-+.|+..+-+-.+++..-|-..|+-.++-|
T Consensus        39 ~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~   84 (148)
T COG4917          39 KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPG   84 (148)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC
T ss_conf             5565880666524678999988761133255430026844448842


No 465
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=62.58  E-value=8.1  Score=18.90  Aligned_cols=22  Identities=27%  Similarity=0.273  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q ss_conf             4998888877289999999985
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFAL   89 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~   89 (404)
                      .+++-|++|.|||-|+-.|-+.
T Consensus         2 k~v~iGd~gvGks~l~~rf~~~   23 (124)
T smart00010        2 KVVGIGDSGVGKVGKSARFVQF   23 (124)
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             6999899998899999998527


No 466
>cd01892 Miro2 Miro2 subfamily.  Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs.  Genes encoding Miro-like proteins were found in several eukaryotic organisms.  This CD represents the putative GTPase domain in the C terminus of Miro proteins.  These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis.  Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=62.55  E-value=7.6  Score=19.06  Aligned_cols=20  Identities=35%  Similarity=0.700  Sum_probs=17.7

Q ss_pred             EEEECCCCCCHHHHHHHHHH
Q ss_conf             99888887728999999998
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFA   88 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~   88 (404)
                      +++-|+.|+|||-|+.-|.+
T Consensus         7 ~~VlG~~~VGKTsLi~rf~~   26 (169)
T cd01892           7 CFVLGAKGSGKSALLRAFLG   26 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHC
T ss_conf             99999999889999999964


No 467
>KOG0745 consensus
Probab=62.50  E-value=8.9  Score=18.64  Aligned_cols=28  Identities=21%  Similarity=0.459  Sum_probs=24.3

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf             8649988888772899999999857811
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIE   93 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~   93 (404)
                      .-.+.|-|+-|.|||+|-..+-.++.++
T Consensus       226 KSNvLllGPtGsGKTllaqTLAr~ldVP  253 (564)
T KOG0745         226 KSNVLLLGPTGSGKTLLAQTLARVLDVP  253 (564)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             3547997788876438999999970887


No 468
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=62.35  E-value=6.9  Score=19.35  Aligned_cols=23  Identities=35%  Similarity=0.514  Sum_probs=15.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             99888887728999999998578
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      .-|-|+-|.|||.||.++-....
T Consensus       459 tlIiGpTGsGKTvll~fl~aq~~  481 (818)
T PRK13830        459 TLIFGPTGSGKSTLLALIAAQFR  481 (818)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
T ss_conf             58989999988999999999986


No 469
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=62.27  E-value=9.4  Score=18.48  Aligned_cols=24  Identities=33%  Similarity=0.439  Sum_probs=20.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             998888877289999999985781
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      +.|-|+-|.|||-|++.+.+..|.
T Consensus         2 ivi~GPSG~GK~tl~~~L~~~~~~   25 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFDP   25 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCC
T ss_conf             999999988999999999851987


No 470
>PRK09694 hypothetical protein; Provisional
Probab=62.16  E-value=12  Score=17.73  Aligned_cols=49  Identities=18%  Similarity=0.213  Sum_probs=43.5

Q ss_pred             HHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf             9613879998423204713588899999999854968998178686775
Q gi|254781047|r  136 IALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL  184 (404)
Q Consensus       136 l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL  184 (404)
                      +.-..+++-|||.|--|.=-.-+|.++++.+-..|+.+|.-|-+-|..+
T Consensus       438 ~gLa~kvvIiDEVHAYD~Ym~~lL~~lL~wl~~~g~~viLLSATLP~~~  486 (878)
T PRK09694        438 LGIGRSVLIVDEVHAYDAYMNGLLEAVLKAQAQVGGSVILLSATLPMTQ  486 (878)
T ss_pred             HHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
T ss_conf             9862874897253334588999999999999983998899927898999


No 471
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=62.13  E-value=7.2  Score=19.24  Aligned_cols=21  Identities=33%  Similarity=0.423  Sum_probs=14.8

Q ss_pred             EEECCCCCCHHHHHHHHHHHC
Q ss_conf             988888772899999999857
Q gi|254781047|r   70 YLHGDVGQGKSMLMNLFFALV   90 (404)
Q Consensus        70 YL~G~VG~GKT~LMdlFy~~l   90 (404)
                      =|-|++|.|||-+...+.+.+
T Consensus         3 GIaG~sgSGKST~a~~l~~~l   23 (220)
T cd02025           3 GIAGSVAVGKSTTARVLQALL   23 (220)
T ss_pred             EEECCCCCCHHHHHHHHHHHH
T ss_conf             978899877999999999986


No 472
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=62.08  E-value=10  Score=18.33  Aligned_cols=23  Identities=26%  Similarity=0.314  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf             49988888772899999999857
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALV   90 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l   90 (404)
                      =+=|-|++|.|||-|.+.+-..+
T Consensus        31 ~iGiTG~PGaGKStli~~l~~~~   53 (267)
T pfam03308        31 RVGITGVPGAGKSTLIEALGMEL   53 (267)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99876899887999999999999


No 473
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=62.03  E-value=6.9  Score=19.35  Aligned_cols=27  Identities=30%  Similarity=0.399  Sum_probs=21.7

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             864998888877289999999985781
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      -.-+-+-|+-|||||-|+++.--..+.
T Consensus        31 ge~vv~lGpSGcGKTTLLnl~AGf~~P   57 (259)
T COG4525          31 GELVVVLGPSGCGKTTLLNLIAGFVTP   57 (259)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf             978999768886578899998627585


No 474
>pfam06048 DUF927 Domain of unknown function (DUF927). Family of bacterial proteins of unknown function.
Probab=61.96  E-value=12  Score=17.71  Aligned_cols=19  Identities=32%  Similarity=0.172  Sum_probs=10.9

Q ss_pred             HHHHHHHHHCCCEEEEECCCC
Q ss_conf             999999985496899817868
Q gi|254781047|r  160 SRLFAALFSHGCIIVMTSNFI  180 (404)
Q Consensus       160 ~rl~~~lf~~gv~lV~TSN~~  180 (404)
                      ++++..|.++|+.+  ||+..
T Consensus        72 ~~~~~~L~~~Gl~i--~s~~~   90 (284)
T pfam06048        72 SELRKELADLGLTI--NSPNA   90 (284)
T ss_pred             HHHHHHHHHCCCCC--CCHHH
T ss_conf             99999999769776--86068


No 475
>PRK05480 uridine kinase; Provisional
Probab=61.81  E-value=8.2  Score=18.86  Aligned_cols=26  Identities=19%  Similarity=0.266  Sum_probs=19.7

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             86499888887728999999998578
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      |-=|=|-|+.|.|||.+...+.+.++
T Consensus         6 P~iIgIaG~SgSGKTT~a~~L~~~l~   31 (209)
T PRK05480          6 PIIIGIAGGSGSGKTTVASTIYEELG   31 (209)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             88999989997789999999999808


No 476
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=61.76  E-value=13  Score=17.69  Aligned_cols=49  Identities=16%  Similarity=0.057  Sum_probs=24.4

Q ss_pred             CCCCEEEEEEEEEC-----C--CHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCC
Q ss_conf             13879998423204-----7--135888999999998549689981786867752387
Q gi|254781047|r  138 LESRVLCFDEFMIT-----N--IADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDE  188 (404)
Q Consensus       138 ~~~~lLCfDEF~V~-----D--iaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~G  188 (404)
                      ++--||-+||=|=.     |  -.+|-=++-+...  ..++.+|..|-+|-=+=|.|.
T Consensus       312 ~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~--~~~~pvvLgSATPSLES~~~~  367 (730)
T COG1198         312 KNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAK--KENAPVVLGSATPSLESYANA  367 (730)
T ss_pred             HHCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH--HCCCCEEEECCCCCHHHHHHH
T ss_conf             12576997024564324777777678999999988--609988982688778999866


No 477
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=61.68  E-value=8.7  Score=18.69  Aligned_cols=31  Identities=23%  Similarity=0.422  Sum_probs=21.9

Q ss_pred             CHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf             225664310246666668864998888877289999999
Q gi|254781047|r   48 GIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLF   86 (404)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlF   86 (404)
                      ++++++|.++..+        |-+-|.-|.|||-|+.-+
T Consensus         3 ~~~~~~f~kk~~k--------ililG~~~~GKTsil~~l   33 (175)
T smart00177        3 KLFSKLFGNKEMR--------ILMVGLDAAGKTTILYKL   33 (175)
T ss_pred             HHHHHHCCCCEEE--------EEEECCCCCCHHHHHHHH
T ss_conf             5767663788899--------999988999989999999


No 478
>PRK08149 ATP synthase SpaL; Validated
Probab=61.64  E-value=7.2  Score=19.23  Aligned_cols=25  Identities=32%  Similarity=0.525  Sum_probs=20.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             6499888887728999999998578
Q gi|254781047|r   67 QGIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        67 kGlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      +=+-|.|+-|+|||.||.+.-....
T Consensus       151 QR~gIf~gsGvGKs~Ll~~i~~~~~  175 (427)
T PRK08149        151 QRMGIFASAGCGKTMLMNMLIEHTE  175 (427)
T ss_pred             CEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf             5400027899867799998886358


No 479
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=61.63  E-value=6.6  Score=19.45  Aligned_cols=40  Identities=30%  Similarity=0.365  Sum_probs=26.9

Q ss_pred             CCCEEEEEEEEECCCHHHHHHHHHHHHHHHC-CCEEEEECCCCH
Q ss_conf             3879998423204713588899999999854-968998178686
Q gi|254781047|r  139 ESRVLCFDEFMITNIADAIILSRLFAALFSH-GCIIVMTSNFIP  181 (404)
Q Consensus       139 ~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~-gv~lV~TSN~~P  181 (404)
                      .++||-+||.---   |.-+|.+|++++-.. .++||--.|.-|
T Consensus       260 ~~DvlIVDEASMV---Dl~Lm~~LL~Alp~~aRLILvGD~dQLp  300 (607)
T PRK10875        260 HLDVLVVDEASMI---DLPMMSRLIDALPDHARVIFLGDRDQLA  300 (607)
T ss_pred             CCCEEEEECCHHH---HHHHHHHHHHHCCCCCEEEEECCHHHCC
T ss_conf             8898999073366---5999999998289998899965623247


No 480
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=61.57  E-value=13  Score=17.67  Aligned_cols=67  Identities=19%  Similarity=0.301  Sum_probs=50.1

Q ss_pred             HHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCE-
Q ss_conf             78999999613879998423-2047135888999999998549689981786867752387405668989999985050-
Q gi|254781047|r  129 IPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLE-  206 (404)
Q Consensus       129 l~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~-  206 (404)
                      --.+|..++.+.++|.+||= -=-|+....-+-.++..+-++|.++|++|-.                  ++...+.|+ 
T Consensus       146 Rv~iAraL~~~p~lllLDEPtsgLD~~~~~~i~~li~~l~~~g~tvi~vtHd------------------l~~~~~~aDr  207 (255)
T PRK11231        146 RAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHD------------------LNQASRYCDH  207 (255)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC------------------HHHHHHHCCE
T ss_conf             9999999953999799838864489999999999999998689999999378------------------8999996999


Q ss_pred             EEECCCC
Q ss_conf             8980473
Q gi|254781047|r  207 IISLDSG  213 (404)
Q Consensus       207 V~~l~~~  213 (404)
                      |+-|+.|
T Consensus       208 iivl~~G  214 (255)
T PRK11231        208 LVVMANG  214 (255)
T ss_pred             EEEEECC
T ss_conf             9999899


No 481
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=61.41  E-value=6.4  Score=19.56  Aligned_cols=99  Identities=19%  Similarity=0.181  Sum_probs=54.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC----CCC-CCCH-----HHHHHHHHH
Q ss_conf             499888887728999999998578111468889999999999999971311224----665-5780-----789999996
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFG----EIL-ESDP-----IPLVASSIA  137 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~----~~~-~~dp-----l~~va~~l~  137 (404)
                      -+.|-|++|++||-|+......+|-.-                  ...|+.++.    ... .+||     ......-..
T Consensus       495 niLl~GDPgtaKSQlL~yv~~iaPRgv------------------ytsGkgsSavGLTA~v~~~d~~tg~~~LEaGALVL  556 (916)
T PTZ00111        495 NVLLCGDPGTAKSQLLHYTHLLSPRSI------------------YTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVL  556 (916)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCEE------------------EECCCCCCCCCCEEEEEECCCCCCCEEEECCCEEE
T ss_conf             599957996018999999997287426------------------74598654226468998326887868985480897


Q ss_pred             CCCCEEEEEEEEECCCHHHHHHHHHHHH--HHHCCCEEEEECCCCHHHH
Q ss_conf             1387999842320471358889999999--9854968998178686775
Q gi|254781047|r  138 LESRVLCFDEFMITNIADAIILSRLFAA--LFSHGCIIVMTSNFIPENL  184 (404)
Q Consensus       138 ~~~~lLCfDEF~V~DiaDAmil~rl~~~--lf~~gv~lV~TSN~~P~dL  184 (404)
                      .+.-+.|+|||.=-+-.|--.|-..++.  +.--+.-+++|=|.--.-|
T Consensus       557 aD~GvccIDEFDKM~~~~rs~lhEaMEQQtvSIAKAGI~~tLnARtSvL  605 (916)
T PTZ00111        557 ANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAIL  605 (916)
T ss_pred             CCCCEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHH
T ss_conf             2798799622203685678899998866312353235045412034565


No 482
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=61.37  E-value=10  Score=18.31  Aligned_cols=22  Identities=32%  Similarity=0.542  Sum_probs=16.9

Q ss_pred             EEEECCCCCCHHHHHHHHHHHC
Q ss_conf             9988888772899999999857
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALV   90 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l   90 (404)
                      |-+=|..|+|||-++..+-+.+
T Consensus         2 I~iEG~iGsGKSTl~~~L~~~~   23 (193)
T cd01673           2 IVVEGNIGAGKSTLAKELAEHL   23 (193)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
T ss_conf             8998888888999999999966


No 483
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=60.90  E-value=8.7  Score=18.71  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=17.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             99888887728999999998578
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      |=|-|+.|.|||.+.+...+.++
T Consensus         2 IgI~G~sgsGKTT~a~~L~~~l~   24 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQLG   24 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
T ss_conf             89889998859999999999809


No 484
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=60.74  E-value=6.8  Score=19.36  Aligned_cols=23  Identities=35%  Similarity=0.556  Sum_probs=19.4

Q ss_pred             EEECCCCCCHHHHHHHHHHHCCC
Q ss_conf             98888877289999999985781
Q gi|254781047|r   70 YLHGDVGQGKSMLMNLFFALVPI   92 (404)
Q Consensus        70 YL~G~VG~GKT~LMdlFy~~l~~   92 (404)
                      -|-|.-|-|||+|+|.+--.+-.
T Consensus        25 VlTGETGAGKSIlidAL~lllG~   47 (276)
T cd03241          25 VLTGETGAGKSILLDALSLLLGG   47 (276)
T ss_pred             EEECCCCCCHHHHHHHHHHHHCC
T ss_conf             88789988899999999996289


No 485
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=60.53  E-value=6.5  Score=19.49  Aligned_cols=111  Identities=19%  Similarity=0.183  Sum_probs=58.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCC----------------CHHHHH--HHHH--------------HHH--------HH
Q ss_conf             4998888877289999999985781----------------114688--8999--------------999--------99
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALVPI----------------EKKCRL--HFYE--------------FMK--------DV  107 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l~~----------------~~K~R~--HFh~--------------FM~--------~i  107 (404)
                      =+=|-|+-|||||-|+.+..--.+.                +.+|.+  =|.+              |-+        ++
T Consensus        32 ~~~llGpSG~GKtTlLr~iaGl~~p~~G~I~~~g~~v~~~~p~~R~ig~VfQ~~aLfPh~tV~eNiafgl~~~~~~~~e~  111 (353)
T TIGR03265        32 FVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEV  111 (353)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHH
T ss_conf             99999999535999999997699998739999999999999525885999788854678929999988998769999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCH---------HHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHH-CCCEEEEE
Q ss_conf             999999713112246655780---------78999999613879998423-20471358889999999985-49689981
Q gi|254781047|r  108 HSRIIMYRKKIEFGEILESDP---------IPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFS-HGCIIVMT  176 (404)
Q Consensus       108 h~~l~~~~~~~~~~~~~~~dp---------l~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~-~gv~lV~T  176 (404)
                      .++..++-...+........|         --.+|..|+.+-++|.+||= ---|..----|...+..+.+ .|+++|..
T Consensus       112 ~~rv~~~l~~~~l~~~~~r~p~~LSGGq~QRVAlARAL~~~P~vlLlDEPlsaLD~~lr~~l~~~l~~l~~~~~~T~i~V  191 (353)
T TIGR03265       112 AERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMV  191 (353)
T ss_pred             HHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf             99999999876995576569646898887999999998549989999087653599999999999999999869989999


Q ss_pred             CC
Q ss_conf             78
Q gi|254781047|r  177 SN  178 (404)
Q Consensus       177 SN  178 (404)
                      +-
T Consensus       192 TH  193 (353)
T TIGR03265       192 TH  193 (353)
T ss_pred             CC
T ss_conf             98


No 486
>COG3911 Predicted ATPase [General function prediction only]
Probab=60.29  E-value=6.8  Score=19.37  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q ss_conf             4998888877289999999985
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFAL   89 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~   89 (404)
                      =+-|-|++|-|||-|+..+-..
T Consensus        11 ~fIltGgpGaGKTtLL~aLa~~   32 (183)
T COG3911          11 RFILTGGPGAGKTTLLAALARA   32 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             8998379997689999999975


No 487
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=60.24  E-value=13  Score=17.52  Aligned_cols=49  Identities=22%  Similarity=0.314  Sum_probs=28.2

Q ss_pred             HHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             999999613879998423-2047135888999999998549689981786
Q gi|254781047|r  131 LVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNF  179 (404)
Q Consensus       131 ~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~  179 (404)
                      .+|..++.+-++|.+||= ---|+..+.-+-+++..|.++|.++|..|-.
T Consensus       146 aiA~aLa~~P~iLiLDEPTs~LD~~~~~~i~~~l~~L~~~g~TvI~itHd  195 (274)
T PRK13644        146 ALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHN  195 (274)
T ss_pred             HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             99999982999999979866789999999999999998689999998337


No 488
>cd04155 Arl3 Arl3 subfamily.  Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension.  In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form.  The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector.  Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2).  It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery.  In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=60.14  E-value=12  Score=17.72  Aligned_cols=23  Identities=17%  Similarity=0.297  Sum_probs=18.8

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf             886499888887728999999998
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFA   88 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~   88 (404)
                      .+| |-+=|..|.|||-|+.-+..
T Consensus        14 ~~K-i~ilG~~~sGKTsll~~l~~   36 (173)
T cd04155          14 EPR-ILILGLDNAGKTTILKQLAS   36 (173)
T ss_pred             CCE-EEEECCCCCCHHHHHHHHHC
T ss_conf             758-99997999988999999856


No 489
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=60.11  E-value=13  Score=17.51  Aligned_cols=42  Identities=21%  Similarity=0.138  Sum_probs=27.2

Q ss_pred             CCHHHHHHHHCCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHH
Q ss_conf             0199985210246899999853788998189878724638999899
Q gi|254781047|r  277 FSFFDLCDRPLSANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFI  322 (404)
Q Consensus       277 f~F~eLC~~~lg~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI  322 (404)
                      ++=+.|=...+.+..+..|+...+-+...+||.    +..+|++++
T Consensus       226 ~~~~~l~~~gl~~P~~~~~~~~l~~~~~~~~p~----~~~~~~~~~  267 (273)
T PRK13647        226 TDRQLLEEAGLKAPLLVQIFEDFEELYKLGIPT----NLKDARQII  267 (273)
T ss_pred             CCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC----CHHHHHHHH
T ss_conf             999999986999987999999988861589998----799999999


No 490
>COG5440 Uncharacterized conserved protein [Function unknown]
Probab=60.07  E-value=13  Score=17.50  Aligned_cols=44  Identities=20%  Similarity=0.207  Sum_probs=30.9

Q ss_pred             HHHHHHHCCCEEEEECCCC-------HHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf             9999985496899817868-------6775238740566898999998505
Q gi|254781047|r  162 LFAALFSHGCIIVMTSNFI-------PENLYKDEINRNVLVSFIELLEKKL  205 (404)
Q Consensus       162 l~~~lf~~gv~lV~TSN~~-------P~dLY~~GLqR~~FlPfI~~lk~~~  205 (404)
                      +=..|...|+-.+++-|-.       -.+||-|||.++.|+..|..+.+..
T Consensus        87 l~~dLlr~~v~F~~~Pn~~~pqsiqvsrelf~DGLtkn~~idai~~V~n~~  137 (161)
T COG5440          87 LRRDLLRLGVDFQALPNPRDPQSIQVSRELFFDGLTKNELIDAIKNVVNAK  137 (161)
T ss_pred             HHHHHHHCCCCEEECCCCCCCCEEEEEHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             999999638735954996677436744556654411889999999998628


No 491
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=59.95  E-value=8.3  Score=18.82  Aligned_cols=18  Identities=28%  Similarity=0.442  Sum_probs=13.5

Q ss_pred             EEEECCCCCCHHHHHHHH
Q ss_conf             998888877289999999
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLF   86 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlF   86 (404)
                      +++-||+..|||-.---.
T Consensus         2 iLVtGG~rSGKS~~AE~l   19 (169)
T cd00544           2 ILVTGGARSGKSRFAERL   19 (169)
T ss_pred             EEEECCCCCCHHHHHHHH
T ss_conf             899778663689999999


No 492
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=59.74  E-value=14  Score=17.47  Aligned_cols=23  Identities=30%  Similarity=0.364  Sum_probs=18.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf             49988888772899999999857
Q gi|254781047|r   68 GIYLHGDVGQGKSMLMNLFFALV   90 (404)
Q Consensus        68 GlYL~G~VG~GKT~LMdlFy~~l   90 (404)
                      =+=|-|+=|+|||-|+.+..-..
T Consensus        33 i~~iiG~sGsGKSTLl~~i~gl~   55 (257)
T PRK10619         33 VISIIGSSGSGKSTFLRCINFLE   55 (257)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCC
T ss_conf             99999899981999999996599


No 493
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=59.69  E-value=8.6  Score=18.74  Aligned_cols=188  Identities=19%  Similarity=0.193  Sum_probs=96.7

Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHCCCCCCC----------------------
Q ss_conf             999999974887789899999999999999986135433---3225664310246666----------------------
Q gi|254781047|r    8 SRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQE---QGIFSWLWNLRGIKRK----------------------   62 (404)
Q Consensus         8 ~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~---~~~~~~~~~~~~~~~~----------------------   62 (404)
                      ..|.+.+++..+ |+.....+..+|++|.. +...++-.   .+...|+...-+.+..                      
T Consensus       253 ~~~~~kie~~~~-p~evkek~~~El~kL~~-m~~~SaE~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLek  330 (782)
T COG0466         253 EELREKIEKLKL-PKEAKEKAEKELKKLET-MSPMSAEATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKILDKDHYGLEK  330 (782)
T ss_pred             HHHHHHHHHCCC-CHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHH
T ss_conf             999999751699-98999999999999850-7999916889989999998288765542132299999874435567116


Q ss_pred             --------------CCCCC--EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             --------------66886--49988888772899999999857811146888999999999999997131122466557
Q gi|254781047|r   63 --------------YCSMQ--GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILES  126 (404)
Q Consensus        63 --------------~~~~k--GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~  126 (404)
                                    ....+  =+-|.|++|+|||=|-...-+++.-+- -|+--    --++++ .+.||-++.=-+.-+
T Consensus       331 VKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkf-vR~sL----GGvrDE-AEIRGHRRTYIGaMP  404 (782)
T COG0466         331 VKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKF-VRISL----GGVRDE-AEIRGHRRTYIGAMP  404 (782)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCE-EEEEC----CCCCCH-HHHCCCCCCCCCCCC
T ss_conf             899999999999861467885799978998870118999999958977-99954----765427-775355312335687


Q ss_pred             CHHHHHHHHHHCCCCEEEEEEE------EECCCHHHHHH-------HHHHHHHHH-----CCCEEEEECCCCHHHHHCCC
Q ss_conf             8078999999613879998423------20471358889-------999999985-----49689981786867752387
Q gi|254781047|r  127 DPIPLVASSIALESRVLCFDEF------MITNIADAIIL-------SRLFAALFS-----HGCIIVMTSNFIPENLYKDE  188 (404)
Q Consensus       127 dpl~~va~~l~~~~~lLCfDEF------~V~DiaDAmil-------~rl~~~lf~-----~gv~lV~TSN~~P~dLY~~G  188 (404)
                      --|-+--++--..-.|+.+||.      +=-|+|.||+=       ..+..++.+     ..|..|+|+|..-      .
T Consensus       405 GrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~------t  478 (782)
T COG0466         405 GKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLD------T  478 (782)
T ss_pred             HHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCHHHHHHHHCCHHHCCCHHHCCCCCCCCHHHEEEEEECCCCC------C
T ss_conf             2899999986776874786403331677778868888862697656761222016766443258886037513------2


Q ss_pred             CCHHHHHHHHHHHHHCCEEEECCCCCHHH
Q ss_conf             40566898999998505089804731122
Q gi|254781047|r  189 INRNVLVSFIELLEKKLEIISLDSGQDYR  217 (404)
Q Consensus       189 LqR~~FlPfI~~lk~~~~V~~l~~~~DYR  217 (404)
                      +-+        -|-.+|+|++|.|-++--
T Consensus       479 IP~--------PLlDRMEiI~lsgYt~~E  499 (782)
T COG0466         479 IPA--------PLLDRMEVIRLSGYTEDE  499 (782)
T ss_pred             CCH--------HHHCCEEEEEECCCCHHH
T ss_conf             986--------784303056426888699


No 494
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=59.66  E-value=10  Score=18.27  Aligned_cols=26  Identities=23%  Similarity=0.354  Sum_probs=19.5

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             86499888887728999999998578
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVP   91 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~   91 (404)
                      +.=|-|-|++|.|||-|-..+.+.+.
T Consensus        34 R~lIgIaG~pGSGKSTlA~~l~~~L~   59 (230)
T PRK09270         34 RTVVGIAGPPGAGKSTLAETLWEALS   59 (230)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             18999989998899999999999986


No 495
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=59.50  E-value=9.9  Score=18.36  Aligned_cols=21  Identities=43%  Similarity=0.490  Sum_probs=17.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHH
Q ss_conf             998888877289999999985
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFAL   89 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~   89 (404)
                      |-+=|..|+|||-|+.-|...
T Consensus         2 i~vvG~~~vGKTsli~r~~~~   22 (162)
T pfam00071         2 LVLVGDGGVGKSSLLIRFTQN   22 (162)
T ss_pred             EEEECCCCCCHHHHHHHHHHC
T ss_conf             899997997799999999619


No 496
>cd01393 recA_like RecA is a  bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response.  RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57.  Archaea have the RecA-like homologs radA and radB.
Probab=59.49  E-value=6  Score=19.71  Aligned_cols=19  Identities=26%  Similarity=0.424  Sum_probs=14.7

Q ss_pred             EEEECCCCCCHHHHHHHHH
Q ss_conf             9988888772899999999
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFF   87 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy   87 (404)
                      .=|+|+.|+|||.|.=.+-
T Consensus        22 tEi~G~~gsGKT~l~lqla   40 (226)
T cd01393          22 TEIFGEFGSGKTQLCLQLA   40 (226)
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999999998999999999


No 497
>CHL00181 cbbX CbbX; Provisional
Probab=59.24  E-value=13  Score=17.61  Aligned_cols=25  Identities=16%  Similarity=0.223  Sum_probs=18.4

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             8864998888877289999999985
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFAL   89 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~   89 (404)
                      +..-+-.-|++|+|||.+--++-+-
T Consensus        58 ~s~h~vF~GnPGTGKTTVARl~a~i   82 (287)
T CHL00181         58 PGLHMSFTGSPGTGKTTVALKMADI   82 (287)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf             7653888789986799999999999


No 498
>KOG0394 consensus
Probab=58.83  E-value=11  Score=18.13  Aligned_cols=22  Identities=36%  Similarity=0.673  Sum_probs=18.1

Q ss_pred             CCEEEEECCCCCCHHHHHHHHH
Q ss_conf             8649988888772899999999
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFF   87 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy   87 (404)
                      +--+-|-|+-|+|||=||+-|.
T Consensus         9 lLKViiLGDsGVGKtSLmn~yv   30 (210)
T KOG0394           9 LLKVIILGDSGVGKTSLMNQYV   30 (210)
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
T ss_conf             3599993799844789999998


No 499
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=58.70  E-value=14  Score=17.35  Aligned_cols=121  Identities=17%  Similarity=0.204  Sum_probs=71.0

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH--HH-HHHHHHHHHHHHCCCCCCCCCC-CCHHHHHHHHHHCC
Q ss_conf             68864998888877289999999985781114688899--99-9999999999713112246655-78078999999613
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY--EF-MKDVHSRIIMYRKKIEFGEILE-SDPIPLVASSIALE  139 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh--~F-M~~ih~~l~~~~~~~~~~~~~~-~dpl~~va~~l~~~  139 (404)
                      .++--|-|.|.-|+||.++-....+..|-+.+.=+--|  .. =.-+-++|+-+..-.-.+...+ +-.+-.    +| +
T Consensus       266 ~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE----~A-~  340 (560)
T COG3829         266 KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLFE----LA-N  340 (560)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE----EC-C
T ss_conf             899828995378866899999987448434798078764338888888887276776424644579976054----41-6


Q ss_pred             CCEEEEEEEEECCCHHHHHHHHHHHHHHHC-------------CCEEEEECCCCHHHHHCCCCCHH
Q ss_conf             879998423204713588899999999854-------------96899817868677523874056
Q gi|254781047|r  140 SRVLCFDEFMITNIADAIILSRLFAALFSH-------------GCIIVMTSNFIPENLYKDEINRN  192 (404)
Q Consensus       140 ~~lLCfDEF~V~DiaDAmil~rl~~~lf~~-------------gv~lV~TSN~~P~dLY~~GLqR~  192 (404)
                      .--||+||.  .+.- -++=++|+..|-++             .|.+|++.|+.|.++-.+|-.|+
T Consensus       341 gGTLFLDEI--gemp-l~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~i~~G~FRe  403 (560)
T COG3829         341 GGTLFLDEI--GEMP-LPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMIAEGTFRE  403 (560)
T ss_pred             CCEEEEHHH--CCCC-HHHHHHHHHHHHHCEEEECCCCCCEEEEEEEEECCCCCHHHHHHCCCCHH
T ss_conf             983771232--0399-89999999987535378537887535678999425758999986396165


No 500
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=58.69  E-value=9.5  Score=18.46  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=16.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHC
Q ss_conf             9988888772899999999857
Q gi|254781047|r   69 IYLHGDVGQGKSMLMNLFFALV   90 (404)
Q Consensus        69 lYL~G~VG~GKT~LMdlFy~~l   90 (404)
                      .-|-|+-|.|||.||.+.-...
T Consensus       444 tlI~GpTGsGKTvll~~l~~q~  465 (815)
T PRK13873        444 TLVVGPTGAGKSVLLALMALQF  465 (815)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
T ss_conf             3897889998999999999998


Done!