Query gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 404
No_of_seqs 139 out of 1090
Neff 6.0
Searched_HMMs 39220
Date Mon May 30 03:42:13 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781047.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 pfam03969 AFG1_ATPase AFG1-lik 100.0 0 0 914.4 38.9 358 5-376 2-360 (361)
2 COG1485 Predicted ATPase [Gene 100.0 0 0 870.9 35.3 361 2-379 7-367 (367)
3 KOG2383 consensus 100.0 0 0 823.2 31.3 377 2-378 32-464 (467)
4 PRK08939 primosomal protein Dn 99.5 2E-12 5.1E-17 99.0 16.5 139 64-217 155-304 (306)
5 PRK08116 hypothetical protein; 99.5 2.7E-12 6.9E-17 98.1 13.4 139 65-220 107-249 (262)
6 PRK00149 dnaA chromosomal repl 99.2 2.9E-10 7.4E-15 85.2 10.3 104 67-184 146-255 (447)
7 COG1484 DnaC DNA replication p 99.1 3.1E-09 7.8E-14 78.7 14.3 142 65-222 104-250 (254)
8 PRK12422 chromosomal replicati 99.1 9.5E-10 2.4E-14 82.0 11.7 103 67-184 142-249 (455)
9 PRK06526 transposase; Provisio 99.0 1.6E-08 4.1E-13 74.1 14.5 143 65-222 97-242 (254)
10 PRK09183 transposase/IS protei 99.0 3.8E-09 9.6E-14 78.1 10.4 148 65-225 100-250 (258)
11 COG0593 DnaA ATPase involved i 99.0 2.5E-09 6.4E-14 79.3 9.3 126 66-216 113-247 (408)
12 PRK08181 transposase; Validate 99.0 9.3E-09 2.4E-13 75.7 10.3 142 65-220 105-248 (269)
13 pfam00308 Bac_DnaA Bacterial d 99.0 4.6E-09 1.2E-13 77.6 8.8 104 67-184 35-144 (219)
14 PRK07952 DNA replication prote 98.9 5.6E-08 1.4E-12 70.7 13.8 136 65-220 95-237 (242)
15 PRK05642 DNA replication initi 98.9 4.6E-09 1.2E-13 77.6 8.2 97 67-184 46-144 (234)
16 PRK08084 DNA replication initi 98.9 5.7E-09 1.4E-13 77.0 8.2 90 68-184 47-145 (235)
17 TIGR03420 DnaA_homol_Hda DnaA 98.9 1.1E-08 2.8E-13 75.2 9.6 94 67-184 39-137 (226)
18 PRK06835 DNA replication prote 98.9 3E-08 7.7E-13 72.4 10.3 136 64-220 181-323 (330)
19 pfam01695 IstB IstB-like ATP b 98.8 7.8E-08 2E-12 69.8 11.0 126 66-207 47-177 (178)
20 PRK08903 hypothetical protein; 98.8 1.6E-08 4E-13 74.2 7.2 92 68-184 44-136 (227)
21 PRK12377 putative replication 98.8 5.8E-07 1.5E-11 64.2 14.4 139 65-220 100-241 (248)
22 PRK08727 hypothetical protein; 98.7 1.2E-07 3.1E-12 68.6 9.3 97 67-184 42-140 (233)
23 PRK06921 hypothetical protein; 98.7 2.3E-07 5.8E-12 66.8 10.7 130 65-217 115-256 (265)
24 PRK06893 DNA replication initi 98.7 4.3E-08 1.1E-12 71.4 6.6 123 66-216 39-164 (229)
25 PRK03992 proteasome-activating 98.7 1.6E-07 4E-12 67.9 9.1 106 64-184 164-284 (390)
26 CHL00195 ycf46 Ycf46; Provisio 98.7 7.6E-08 1.9E-12 69.9 7.4 104 63-180 256-370 (491)
27 cd00009 AAA The AAA+ (ATPases 98.6 3.2E-07 8.2E-12 65.9 9.3 108 65-182 18-132 (151)
28 PRK09087 hypothetical protein; 98.4 3.5E-06 8.9E-11 59.3 8.9 88 66-184 44-131 (226)
29 PRK06620 hypothetical protein; 98.4 3.3E-06 8.5E-11 59.4 8.7 84 66-184 44-127 (214)
30 KOG0733 consensus 98.3 1.4E-05 3.6E-10 55.4 10.2 140 64-220 221-389 (802)
31 pfam07728 AAA_5 AAA domain (dy 98.2 2.6E-06 6.7E-11 60.1 5.1 91 68-167 1-91 (139)
32 CHL00176 ftsH cell division pr 98.1 6.2E-05 1.6E-09 51.4 11.2 141 64-218 208-373 (631)
33 KOG0727 consensus 98.1 4.8E-05 1.2E-09 52.1 9.6 112 64-192 187-320 (408)
34 COG1222 RPT1 ATP-dependent 26S 98.0 0.00016 4.1E-09 48.8 10.9 140 64-219 183-349 (406)
35 pfam00004 AAA ATPase family as 98.0 1E-05 2.6E-10 56.3 4.4 101 69-185 1-115 (131)
36 PRK04195 replication factor C 97.9 0.00013 3.3E-09 49.4 9.1 115 66-214 40-162 (403)
37 KOG0730 consensus 97.9 7.3E-05 1.9E-09 50.9 7.7 139 62-216 214-375 (693)
38 PRK10733 hflB ATP-dependent me 97.9 0.00013 3.4E-09 49.3 8.8 141 64-218 183-348 (644)
39 COG0464 SpoVK ATPases of the A 97.8 3.6E-05 9.1E-10 52.9 5.5 106 63-182 273-390 (494)
40 PRK00411 cdc6 cell division co 97.8 0.00013 3.3E-09 49.3 7.8 113 65-180 54-183 (394)
41 KOG0730 consensus 97.7 0.00011 2.9E-09 49.7 6.6 99 63-181 465-581 (693)
42 pfam07726 AAA_3 ATPase family 97.7 1E-05 2.6E-10 56.4 1.0 92 69-178 2-111 (131)
43 PRK11034 clpA ATP-dependent Cl 97.7 0.0019 4.7E-08 42.0 12.1 126 67-212 208-348 (758)
44 KOG0735 consensus 97.7 0.00068 1.7E-08 44.8 9.8 27 65-91 700-726 (952)
45 KOG0733 consensus 97.6 4.4E-05 1.1E-09 52.3 3.2 139 64-217 543-706 (802)
46 KOG0651 consensus 97.6 0.00089 2.3E-08 44.0 9.8 124 63-211 163-315 (388)
47 COG0714 MoxR-like ATPases [Gen 97.6 7.2E-05 1.8E-09 51.0 3.9 102 67-178 44-162 (329)
48 smart00382 AAA ATPases associa 97.6 0.00025 6.3E-09 47.6 6.4 113 66-179 2-125 (148)
49 KOG0736 consensus 97.6 0.0018 4.6E-08 42.1 10.7 184 68-328 707-906 (953)
50 TIGR01242 26Sp45 26S proteasom 97.5 5.4E-05 1.4E-09 51.8 2.6 138 64-218 154-319 (364)
51 COG1223 Predicted ATPase (AAA+ 97.5 0.0011 2.9E-08 43.4 9.0 122 65-216 150-308 (368)
52 PRK10865 protein disaggregatio 97.4 0.0019 4.8E-08 42.0 9.6 126 67-212 200-340 (857)
53 PRK12402 replication factor C 97.4 0.0011 2.9E-08 43.4 7.6 119 69-213 39-184 (337)
54 pfam00910 RNA_helicase RNA hel 97.3 0.00025 6.3E-09 47.6 4.0 85 69-179 1-105 (105)
55 PRK13342 recombination factor 97.3 0.00041 1E-08 46.2 4.8 108 67-212 38-150 (417)
56 KOG0732 consensus 97.3 0.00047 1.2E-08 45.8 5.1 112 62-182 295-418 (1080)
57 KOG0734 consensus 97.3 0.0087 2.2E-07 37.7 11.2 159 27-218 311-497 (752)
58 PRK00440 rfc replication facto 97.2 0.001 2.6E-08 43.7 6.2 115 69-214 40-161 (318)
59 KOG0742 consensus 97.2 0.0062 1.6E-07 38.7 10.2 94 62-182 380-497 (630)
60 KOG0744 consensus 97.2 0.00031 7.9E-09 46.9 3.3 148 30-181 135-308 (423)
61 TIGR01241 FtsH_fam ATP-depende 97.2 0.00017 4.4E-09 48.6 1.9 171 65-257 91-311 (505)
62 TIGR02639 ClpA ATP-dependent C 97.2 0.0025 6.4E-08 41.2 7.6 107 61-183 521-650 (774)
63 PRK06921 hypothetical protein; 97.1 0.0044 1.1E-07 39.7 8.4 74 289-370 167-244 (265)
64 TIGR03345 VI_ClpV1 type VI sec 97.1 0.012 3E-07 36.9 10.5 21 69-89 211-231 (852)
65 COG0542 clpA ATP-binding subun 97.1 0.0093 2.4E-07 37.6 10.0 114 62-187 516-651 (786)
66 KOG1051 consensus 97.1 0.016 4E-07 36.1 11.0 119 64-189 589-720 (898)
67 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0056 1.4E-07 38.9 8.7 98 69-177 197-309 (852)
68 CHL00095 clpC Clp protease ATP 97.0 0.0055 1.4E-07 39.0 8.1 99 67-176 201-313 (823)
69 pfam07724 AAA_2 AAA domain (Cd 96.9 0.0022 5.7E-08 41.5 5.4 109 68-184 5-130 (168)
70 KOG0737 consensus 96.9 0.00075 1.9E-08 44.5 2.7 25 65-89 126-150 (386)
71 PRK08116 hypothetical protein; 96.9 0.013 3.4E-07 36.6 9.1 79 288-375 162-241 (262)
72 pfam01637 Arch_ATPase Archaeal 96.8 0.044 1.1E-06 33.3 14.2 25 68-92 22-46 (223)
73 KOG0729 consensus 96.8 0.0057 1.4E-07 38.9 6.6 26 64-89 209-234 (435)
74 PRK13341 recombination factor 96.7 0.0031 7.8E-08 40.6 5.0 110 66-212 52-167 (726)
75 KOG0652 consensus 96.7 0.0023 5.8E-08 41.4 4.3 162 3-191 146-335 (424)
76 TIGR01448 recD_rel helicase, R 96.7 0.01 2.6E-07 37.3 7.6 161 4-220 334-525 (769)
77 pfam00158 Sigma54_activat Sigm 96.7 0.015 3.8E-07 36.2 8.4 118 68-193 24-157 (168)
78 COG0470 HolB ATPase involved i 96.7 0.0025 6.4E-08 41.2 4.2 131 67-212 25-167 (325)
79 pfam05496 RuvB_N Holliday junc 96.6 0.0065 1.6E-07 38.6 6.0 24 68-91 52-75 (234)
80 PRK11331 5-methylcytosine-spec 96.6 0.016 4.2E-07 36.0 8.1 139 65-213 193-358 (459)
81 pfam03969 AFG1_ATPase AFG1-lik 96.6 0.012 3.1E-07 36.8 7.1 76 294-374 122-204 (361)
82 pfam00931 NB-ARC NB-ARC domain 96.5 0.034 8.7E-07 34.0 9.3 105 66-178 19-136 (285)
83 cd03291 ABCC_CFTR1 The CFTR su 96.5 0.013 3.3E-07 36.7 7.0 28 65-92 62-89 (282)
84 pfam05673 DUF815 Protein of un 96.5 0.0044 1.1E-07 39.6 4.6 94 65-180 52-152 (248)
85 PRK11174 cysteine/glutathione 96.4 0.025 6.4E-07 34.8 7.8 18 320-337 492-509 (588)
86 cd00267 ABC_ATPase ABC (ATP-bi 96.4 0.025 6.3E-07 34.8 7.7 112 67-184 26-144 (157)
87 COG0465 HflB ATP-dependent Zn 96.3 0.0055 1.4E-07 39.0 4.3 134 64-218 181-346 (596)
88 PRK13539 cytochrome c biogenes 96.3 0.051 1.3E-06 32.9 8.9 26 67-92 29-54 (206)
89 TIGR00362 DnaA chromosomal rep 96.3 0.02 5.1E-07 35.4 6.8 135 65-213 180-334 (493)
90 COG2607 Predicted ATPase (AAA+ 96.2 0.007 1.8E-07 38.3 4.3 95 65-180 84-184 (287)
91 COG1474 CDC6 Cdc6-related prot 96.2 0.018 4.5E-07 35.8 6.2 113 68-181 44-167 (366)
92 cd03244 ABCC_MRP_domain2 Domai 96.1 0.04 1E-06 33.6 7.7 25 68-92 32-56 (221)
93 TIGR00635 ruvB Holliday juncti 96.1 0.021 5.4E-07 35.3 6.2 181 24-288 8-217 (305)
94 smart00487 DEXDc DEAD-like hel 96.0 0.13 3.4E-06 30.2 11.1 38 16-83 4-41 (201)
95 TIGR01243 CDC48 AAA family ATP 96.0 0.005 1.3E-07 39.3 2.7 138 63-219 572-738 (980)
96 TIGR01243 CDC48 AAA family ATP 96.0 0.0065 1.7E-07 38.5 3.2 123 41-186 223-357 (980)
97 PRK10790 putative multidrug tr 96.0 0.14 3.5E-06 30.2 10.0 15 232-246 376-390 (593)
98 PHA02244 ATPase-like protein 95.9 0.073 1.8E-06 31.9 8.2 86 66-166 119-204 (383)
99 KOG0728 consensus 95.9 0.023 5.8E-07 35.1 5.6 139 64-218 179-344 (404)
100 PRK11614 livF leucine/isoleuci 95.9 0.16 4.1E-06 29.7 11.0 24 68-91 33-56 (237)
101 cd03245 ABCC_bacteriocin_expor 95.8 0.048 1.2E-06 33.0 7.0 26 66-91 30-55 (220)
102 PRK11176 lipid transporter ATP 95.8 0.11 2.7E-06 30.8 8.7 19 319-337 485-503 (581)
103 cd03227 ABC_Class2 ABC-type Cl 95.7 0.013 3.3E-07 36.7 3.9 108 67-181 22-142 (162)
104 COG2256 MGS1 ATPase related to 95.7 0.011 2.8E-07 37.1 3.4 113 66-212 48-162 (436)
105 PRK05642 DNA replication initi 95.7 0.076 1.9E-06 31.8 7.6 70 292-370 91-160 (234)
106 PRK00149 dnaA chromosomal repl 95.7 0.08 2E-06 31.6 7.7 81 286-375 196-281 (447)
107 cd03231 ABC_CcmA_heme_exporter 95.7 0.13 3.3E-06 30.3 8.8 27 66-92 26-52 (201)
108 cd03232 ABC_PDR_domain2 The pl 95.6 0.081 2.1E-06 31.6 7.7 112 68-184 35-172 (192)
109 KOG2028 consensus 95.6 0.016 4E-07 36.1 4.0 117 64-211 160-279 (554)
110 cd03248 ABCC_TAP TAP, the Tran 95.6 0.056 1.4E-06 32.6 6.8 26 67-92 41-66 (226)
111 PRK13546 teichoic acids export 95.6 0.2 5E-06 29.1 10.3 114 68-181 52-204 (264)
112 KOG0726 consensus 95.6 0.01 2.6E-07 37.3 3.0 71 64-149 217-288 (440)
113 PRK10923 glnG nitrogen regulat 95.6 0.062 1.6E-06 32.4 6.9 126 64-195 159-298 (469)
114 PRK13540 cytochrome c biogenes 95.6 0.21 5.3E-06 29.0 9.9 27 67-93 28-54 (200)
115 cd03289 ABCC_CFTR2 The CFTR su 95.5 0.074 1.9E-06 31.8 7.2 52 128-180 145-197 (275)
116 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.5 0.2 5E-06 29.2 9.1 112 67-179 49-201 (224)
117 PRK10787 DNA-binding ATP-depen 95.4 0.036 9.1E-07 33.9 5.2 129 67-218 350-498 (784)
118 PRK13541 cytochrome c biogenes 95.4 0.031 7.8E-07 34.3 4.9 53 129-181 131-184 (195)
119 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.4 0.061 1.6E-06 32.4 6.4 26 66-91 29-54 (238)
120 PRK11608 pspF phage shock prot 95.4 0.023 5.9E-07 35.1 4.2 122 67-196 30-167 (325)
121 PRK11388 DNA-binding transcrip 95.4 0.042 1.1E-06 33.4 5.5 26 66-91 348-373 (639)
122 KOG0741 consensus 95.4 0.009 2.3E-07 37.7 2.0 22 64-85 254-275 (744)
123 PRK07270 DNA polymerase III su 95.4 0.071 1.8E-06 32.0 6.6 123 69-211 39-175 (557)
124 cd03253 ABCC_ATM1_transporter 95.4 0.058 1.5E-06 32.5 6.1 25 67-91 28-52 (236)
125 cd03301 ABC_MalK_N The N-termi 95.4 0.17 4.4E-06 29.5 8.5 117 68-184 28-195 (213)
126 PRK10820 DNA-binding transcrip 95.3 0.073 1.9E-06 31.9 6.6 115 65-194 226-356 (513)
127 cd03247 ABCC_cytochrome_bd The 95.3 0.054 1.4E-06 32.7 5.8 108 68-176 30-154 (178)
128 cd03252 ABCC_Hemolysin The ABC 95.3 0.071 1.8E-06 31.9 6.4 25 67-91 29-53 (237)
129 PRK13657 cyclic beta-1,2-gluca 95.3 0.087 2.2E-06 31.4 6.8 45 289-337 450-495 (585)
130 pfam05621 TniB Bacterial TniB 95.3 0.26 6.6E-06 28.4 11.1 139 65-218 60-221 (302)
131 cd03214 ABC_Iron-Siderophores_ 95.2 0.23 5.9E-06 28.7 8.9 111 67-181 26-159 (180)
132 cd03254 ABCC_Glucan_exporter_l 95.2 0.11 2.8E-06 30.8 7.2 27 66-92 29-55 (229)
133 cd03236 ABC_RNaseL_inhibitor_d 95.2 0.24 6.2E-06 28.6 8.9 48 131-178 149-197 (255)
134 COG2255 RuvB Holliday junction 95.2 0.12 3E-06 30.5 7.3 74 64-159 50-123 (332)
135 cd03246 ABCC_Protease_Secretio 95.2 0.019 4.8E-07 35.6 3.1 115 66-180 28-156 (173)
136 KOG2004 consensus 95.2 0.28 7.1E-06 28.2 10.1 122 65-213 437-583 (906)
137 PRK10789 putative multidrug tr 95.1 0.095 2.4E-06 31.2 6.6 20 318-337 456-475 (569)
138 TIGR02903 spore_lon_C ATP-depe 95.1 0.081 2.1E-06 31.6 6.2 149 62-239 172-362 (616)
139 PRK00080 ruvB Holliday junctio 95.1 0.12 3E-06 30.6 7.0 108 23-175 28-135 (328)
140 PRK05022 anaerobic nitric oxid 95.1 0.088 2.2E-06 31.4 6.3 120 64-194 207-345 (510)
141 PRK06835 DNA replication prote 95.1 0.26 6.7E-06 28.4 8.7 89 274-370 214-310 (330)
142 TIGR03015 pepcterm_ATPase puta 95.0 0.083 2.1E-06 31.5 6.1 95 69-168 46-152 (269)
143 cd03269 ABC_putative_ATPase Th 95.0 0.28 7.1E-06 28.2 8.8 51 131-181 138-189 (210)
144 cd03251 ABCC_MsbA MsbA is an e 95.0 0.13 3.4E-06 30.2 7.1 27 66-92 28-54 (234)
145 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.0 0.075 1.9E-06 31.8 5.8 100 66-178 26-126 (144)
146 COG1373 Predicted ATPase (AAA+ 95.0 0.076 1.9E-06 31.8 5.8 93 68-181 39-133 (398)
147 PRK07952 DNA replication prote 95.0 0.28 7.1E-06 28.2 8.6 75 286-368 147-221 (242)
148 PRK12422 chromosomal replicati 94.9 0.12 3E-06 30.6 6.7 80 287-375 191-275 (455)
149 cd03228 ABCC_MRP_Like The MRP 94.9 0.034 8.6E-07 34.0 3.7 108 67-178 29-154 (171)
150 KOG0739 consensus 94.9 0.038 9.7E-07 33.7 4.0 28 63-90 163-190 (439)
151 cd03238 ABC_UvrA The excision 94.8 0.19 4.7E-06 29.3 7.5 111 68-179 23-148 (176)
152 KOG0731 consensus 94.8 0.022 5.7E-07 35.2 2.7 141 64-218 342-509 (774)
153 KOG0738 consensus 94.8 0.026 6.5E-07 34.8 3.0 27 65-91 244-270 (491)
154 cd01124 KaiC KaiC is a circadi 94.8 0.061 1.6E-06 32.4 5.0 23 69-91 2-25 (187)
155 PRK08084 DNA replication initi 94.8 0.19 4.9E-06 29.2 7.5 69 290-367 89-158 (235)
156 cd03250 ABCC_MRP_domain1 Domai 94.6 0.27 7E-06 28.2 7.9 27 66-92 31-57 (204)
157 cd03233 ABC_PDR_domain1 The pl 94.6 0.096 2.4E-06 31.1 5.5 118 66-185 33-184 (202)
158 cd03299 ABC_ModC_like Archeal 94.6 0.33 8.5E-06 27.7 8.2 24 68-91 27-50 (235)
159 PRK11248 tauB taurine transpor 94.5 0.42 1.1E-05 27.1 8.8 25 68-92 29-53 (255)
160 cd03216 ABC_Carb_Monos_I This 94.5 0.21 5.3E-06 29.0 6.9 113 66-181 26-143 (163)
161 cd03224 ABC_TM1139_LivF_branch 94.4 0.43 1.1E-05 27.0 10.8 25 68-92 28-52 (222)
162 PRK06674 DNA polymerase III su 94.4 0.056 1.4E-06 32.6 4.0 163 1-211 1-176 (563)
163 PRK13638 cbiO cobalt transport 94.4 0.17 4.2E-06 29.6 6.3 51 130-180 145-196 (271)
164 PRK13549 xylose transporter AT 94.4 0.44 1.1E-05 26.9 8.9 54 129-182 151-205 (513)
165 PRK11361 acetoacetate metaboli 94.4 0.15 3.9E-06 29.8 6.1 122 65-194 165-302 (457)
166 TIGR03420 DnaA_homol_Hda DnaA 94.3 0.32 8.3E-06 27.8 7.7 69 291-368 83-151 (226)
167 cd03288 ABCC_SUR2 The SUR doma 94.3 0.26 6.7E-06 28.3 7.2 27 66-92 47-73 (257)
168 cd03217 ABC_FeS_Assembly ABC-t 94.3 0.22 5.5E-06 28.9 6.8 107 68-178 28-162 (200)
169 PRK13531 regulatory ATPase Rav 94.3 0.013 3.3E-07 36.6 0.5 126 67-217 40-187 (498)
170 COG1121 ZnuC ABC-type Mn/Zn tr 94.3 0.14 3.7E-06 30.0 5.8 68 129-214 147-216 (254)
171 PRK06647 DNA polymerase III su 94.3 0.16 4.1E-06 29.7 6.0 164 1-211 1-176 (560)
172 PRK04841 transcriptional regul 94.2 0.47 1.2E-05 26.7 9.8 115 66-182 32-165 (903)
173 cd03222 ABC_RNaseL_inhibitor T 94.2 0.14 3.6E-06 30.1 5.6 102 68-178 27-130 (177)
174 PRK10365 transcriptional regul 94.2 0.32 8.1E-06 27.8 7.5 123 64-195 160-299 (441)
175 PRK13544 consensus 94.1 0.49 1.2E-05 26.6 11.2 64 130-211 135-199 (208)
176 TIGR02902 spore_lonB ATP-depen 94.1 0.04 1E-06 33.5 2.8 141 64-239 84-271 (532)
177 cd03226 ABC_cobalt_CbiO_domain 94.1 0.29 7.4E-06 28.1 7.1 25 68-92 28-52 (205)
178 pfam00270 DEAD DEAD/DEAH box h 94.1 0.49 1.3E-05 26.6 10.1 16 68-83 16-31 (167)
179 PRK05917 DNA polymerase III su 94.0 0.11 2.8E-06 30.8 4.8 131 65-212 18-153 (290)
180 PRK07399 DNA polymerase III su 94.0 0.52 1.3E-05 26.4 9.8 126 66-212 26-181 (314)
181 pfam09848 DUF2075 Uncharacteri 94.0 0.073 1.8E-06 31.9 3.8 21 69-89 4-25 (348)
182 CHL00095 clpC Clp protease ATP 93.9 0.53 1.3E-05 26.4 8.1 114 62-186 534-668 (823)
183 PRK06305 DNA polymerase III su 93.9 0.37 9.4E-06 27.4 7.3 126 67-211 40-178 (462)
184 cd03234 ABCG_White The White s 93.8 0.57 1.5E-05 26.2 10.3 55 130-184 152-207 (226)
185 pfam00308 Bac_DnaA Bacterial d 93.6 0.19 4.8E-06 29.3 5.4 70 289-367 88-157 (219)
186 cd03230 ABC_DR_subfamily_A Thi 93.5 0.029 7.5E-07 34.4 1.1 111 69-182 29-157 (173)
187 COG0606 Predicted ATPase with 93.5 0.043 1.1E-06 33.4 1.9 122 64-191 196-347 (490)
188 pfam08298 AAA_PrkA PrkA AAA do 93.5 0.075 1.9E-06 31.8 3.1 209 65-338 84-312 (358)
189 KOG2543 consensus 93.4 0.65 1.7E-05 25.8 9.6 121 64-187 28-165 (438)
190 PRK13538 cytochrome c biogenes 93.4 0.26 6.7E-06 28.4 5.9 25 68-92 29-53 (204)
191 PRK10938 putative molybdenum t 93.4 0.67 1.7E-05 25.8 8.8 53 130-182 144-197 (490)
192 TIGR02928 TIGR02928 orc1/cdc6 93.3 0.21 5.3E-06 29.0 5.2 30 65-94 42-71 (383)
193 cd03237 ABC_RNaseL_inhibitor_d 93.3 0.58 1.5E-05 26.2 7.5 110 69-178 28-174 (246)
194 smart00763 AAA_PrkA PrkA AAA d 93.3 0.076 1.9E-06 31.8 2.9 75 9-90 5-102 (361)
195 PRK03695 vitamin B12-transport 93.3 0.69 1.8E-05 25.7 9.2 40 139-178 148-188 (245)
196 PRK10895 putative ABC transpor 93.2 0.7 1.8E-05 25.6 9.1 50 130-179 146-196 (241)
197 cd03298 ABC_ThiQ_thiamine_tran 93.1 0.73 1.9E-05 25.5 9.2 24 68-91 26-49 (211)
198 PRK10865 protein disaggregatio 93.1 0.6 1.5E-05 26.1 7.3 113 61-184 592-725 (857)
199 TIGR03258 PhnT 2-aminoethylpho 93.1 0.74 1.9E-05 25.5 7.8 135 68-202 33-246 (362)
200 PRK11160 cysteine/glutathione 93.0 0.68 1.7E-05 25.7 7.5 20 318-337 481-500 (575)
201 COG1120 FepC ABC-type cobalami 93.0 0.75 1.9E-05 25.5 7.8 151 67-244 29-237 (258)
202 KOG1803 consensus 93.0 0.032 8.2E-07 34.1 0.7 25 68-92 203-227 (649)
203 cd03271 ABC_UvrA_II The excisi 93.0 0.77 2E-05 25.4 10.1 19 66-84 21-39 (261)
204 cd03259 ABC_Carb_Solutes_like 92.9 0.38 9.6E-06 27.4 6.0 26 67-92 27-52 (213)
205 KOG0740 consensus 92.9 0.047 1.2E-06 33.1 1.3 27 61-87 181-207 (428)
206 cd03223 ABCD_peroxisomal_ALDP 92.8 0.41 1E-05 27.1 6.1 106 66-179 27-147 (166)
207 PRK08451 DNA polymerase III su 92.8 0.073 1.9E-06 31.9 2.2 127 66-211 36-174 (523)
208 cd03369 ABCC_NFT1 Domain 2 of 92.7 0.35 8.8E-06 27.6 5.6 25 68-92 36-60 (207)
209 PRK11247 ssuB aliphatic sulfon 92.6 0.76 1.9E-05 25.4 7.3 115 68-182 40-196 (257)
210 KOG1514 consensus 92.6 0.072 1.8E-06 31.9 2.1 129 64-196 420-575 (767)
211 TIGR00643 recG ATP-dependent D 92.5 0.15 3.9E-06 29.9 3.6 45 16-85 303-347 (721)
212 PRK05896 DNA polymerase III su 92.4 0.85 2.2E-05 25.1 7.3 127 66-211 38-176 (613)
213 pfam06745 KaiC KaiC. This fami 92.3 0.5 1.3E-05 26.6 6.0 42 139-180 119-165 (231)
214 KOG2227 consensus 92.2 0.51 1.3E-05 26.5 6.0 124 64-199 173-310 (529)
215 cd03300 ABC_PotA_N PotA is an 92.2 0.67 1.7E-05 25.8 6.6 25 68-92 28-52 (232)
216 PRK11000 maltose/maltodextrin 92.2 0.97 2.5E-05 24.7 9.5 135 68-202 31-243 (369)
217 cd03218 ABC_YhbG The ABC trans 92.1 0.98 2.5E-05 24.7 8.6 51 129-179 141-192 (232)
218 PRK05563 DNA polymerase III su 92.1 0.98 2.5E-05 24.7 9.6 160 1-211 1-176 (541)
219 PRK08058 DNA polymerase III su 92.1 0.62 1.6E-05 26.0 6.3 129 66-212 28-168 (329)
220 KOG0743 consensus 92.0 0.27 6.9E-06 28.3 4.3 27 64-90 233-259 (457)
221 PRK08769 DNA polymerase III su 92.0 0.46 1.2E-05 26.8 5.5 135 65-215 25-174 (319)
222 PRK13636 cbiO cobalt transport 91.9 0.36 9.1E-06 27.5 4.9 24 68-91 34-57 (285)
223 pfam01078 Mg_chelatase Magnesi 91.9 0.13 3.3E-06 30.3 2.6 26 67-92 23-48 (207)
224 TIGR00150 TIGR00150 conserved 91.8 0.15 3.9E-06 29.8 2.9 27 68-94 30-56 (147)
225 cd03268 ABC_BcrA_bacitracin_re 91.8 0.64 1.6E-05 25.9 6.1 52 131-182 136-188 (208)
226 PRK13407 bchI magnesium chelat 91.8 0.23 6E-06 28.7 3.8 28 65-92 28-55 (334)
227 PRK07003 DNA polymerase III su 91.7 0.78 2E-05 25.3 6.4 148 1-211 1-176 (816)
228 PRK09544 znuC high-affinity zi 91.7 1.1 2.8E-05 24.4 8.2 114 68-181 32-182 (251)
229 COG2204 AtoC Response regulato 91.7 1.1 2.8E-05 24.4 8.2 129 65-212 163-311 (464)
230 cd01882 BMS1 Bms1. Bms1 is an 91.6 0.22 5.7E-06 28.8 3.6 97 61-182 34-144 (225)
231 PRK10876 recB exonuclease V su 91.6 0.59 1.5E-05 26.1 5.7 46 129-174 367-412 (1181)
232 PRK08903 hypothetical protein; 91.4 0.78 2E-05 25.4 6.1 62 294-367 86-148 (227)
233 cd01120 RecA-like_NTPases RecA 91.2 1.2 3.2E-05 24.1 7.2 22 69-90 2-23 (165)
234 TIGR00368 TIGR00368 Mg chelata 91.1 0.17 4.3E-06 29.6 2.5 26 66-91 213-238 (505)
235 cd01130 VirB11-like_ATPase Typ 91.0 0.84 2.1E-05 25.1 6.0 27 67-93 26-52 (186)
236 COG1061 SSL2 DNA or RNA helica 90.9 1.3 3.4E-05 23.9 10.1 135 15-181 31-184 (442)
237 PRK05564 DNA polymerase III su 90.8 0.9 2.3E-05 25.0 6.0 121 66-212 26-151 (313)
238 TIGR02546 III_secr_ATP type II 90.6 0.18 4.5E-06 29.4 2.2 27 66-92 153-179 (430)
239 KOG0989 consensus 90.5 0.99 2.5E-05 24.7 6.0 126 68-223 59-202 (346)
240 TIGR02759 TraD_Ftype type IV c 90.5 0.26 6.5E-06 28.4 3.0 92 287-392 439-544 (613)
241 PRK13639 cbiO cobalt transport 90.4 1.4 3.5E-05 23.8 6.7 24 68-91 30-53 (275)
242 TIGR03410 urea_trans_UrtE urea 90.4 1.5 3.7E-05 23.6 11.0 24 68-91 28-51 (230)
243 PRK06090 DNA polymerase III su 90.3 0.42 1.1E-05 27.1 4.0 133 65-213 24-167 (319)
244 TIGR02639 ClpA ATP-dependent C 89.7 0.34 8.6E-06 27.7 3.1 129 70-213 233-373 (774)
245 COG1074 RecB ATP-dependent exo 89.6 1.6 4.1E-05 23.3 6.5 74 100-175 330-416 (1139)
246 PRK05707 DNA polymerase III su 89.6 0.34 8.8E-06 27.6 3.1 132 66-213 22-165 (328)
247 PRK10771 thiQ thiamine transpo 89.5 1.7 4.4E-05 23.2 9.0 26 67-92 26-51 (233)
248 cd00046 DEXDc DEAD-like helica 89.5 1.7 4.4E-05 23.1 8.2 20 68-87 2-21 (144)
249 PRK04040 adenylate kinase; Pro 89.4 0.65 1.6E-05 25.9 4.3 45 66-111 2-46 (189)
250 PRK10917 ATP-dependent DNA hel 89.3 0.83 2.1E-05 25.2 4.9 42 65-106 277-329 (677)
251 TIGR03375 type_I_sec_LssB type 89.2 1.3 3.2E-05 24.0 5.7 44 291-338 583-626 (694)
252 PRK07940 DNA polymerase III su 89.1 0.51 1.3E-05 26.5 3.6 128 68-213 41-179 (395)
253 cd03239 ABC_SMC_head The struc 89.1 1.8 4.7E-05 23.0 10.0 112 66-179 22-158 (178)
254 pfam06309 Torsin Torsin. This 89.0 0.19 4.8E-06 29.2 1.4 31 62-92 49-79 (127)
255 COG1200 RecG RecG-like helicas 88.8 1.8 4.6E-05 23.1 6.3 115 66-184 283-426 (677)
256 KOG2170 consensus 88.7 2 5E-05 22.8 9.0 120 61-192 105-244 (344)
257 COG1132 MdlB ABC-type multidru 88.6 2 5E-05 22.8 7.2 28 65-92 354-381 (567)
258 PRK10247 putative ABC transpor 88.6 2 5.1E-05 22.8 9.8 25 67-91 34-58 (225)
259 PRK13765 ATP-dependent proteas 88.4 0.58 1.5E-05 26.2 3.5 28 66-93 50-77 (637)
260 cd03266 ABC_NatA_sodium_export 88.4 2.1 5.3E-05 22.7 11.4 51 131-181 146-197 (218)
261 PRK09302 circadian clock prote 88.2 0.57 1.4E-05 26.2 3.4 44 139-182 123-172 (501)
262 pfam05729 NACHT NACHT domain. 88.1 0.5 1.3E-05 26.6 3.0 22 68-89 2-23 (165)
263 PRK13543 cytochrome c biogenes 87.9 2.2 5.6E-05 22.5 10.0 27 65-91 36-62 (214)
264 pfam10236 DAP3 Mitochondrial r 87.8 0.44 1.1E-05 26.9 2.6 26 65-90 22-47 (274)
265 pfam02367 UPF0079 Uncharacteri 87.8 0.65 1.7E-05 25.8 3.5 88 67-184 16-104 (123)
266 PRK09112 DNA polymerase III su 87.8 2.2 5.7E-05 22.4 9.2 148 138-330 140-292 (352)
267 PRK09862 putative ATP-dependen 87.8 0.49 1.2E-05 26.6 2.8 28 65-92 209-236 (506)
268 PRK04328 hypothetical protein; 87.8 1.6 4.1E-05 23.4 5.5 24 68-91 26-50 (250)
269 PRK10908 cell division protein 87.7 2.3 5.8E-05 22.4 7.6 52 130-181 146-198 (222)
270 TIGR00609 recB exodeoxyribonuc 87.7 1.6 4.1E-05 23.3 5.4 79 94-175 369-462 (1324)
271 pfam01057 Parvo_NS1 Parvovirus 87.4 1.1 2.9E-05 24.4 4.5 120 65-212 112-238 (271)
272 PRK04863 mukB cell division pr 87.1 0.32 8.1E-06 27.8 1.6 48 46-102 15-62 (1486)
273 TIGR01194 cyc_pep_trnsptr cycl 87.0 0.58 1.5E-05 26.2 2.9 49 66-114 368-428 (555)
274 cd03213 ABCG_EPDR ABCG transpo 87.0 2.5 6.3E-05 22.2 6.6 112 68-185 37-176 (194)
275 pfam02562 PhoH PhoH-like prote 87.0 0.6 1.5E-05 26.1 2.9 34 19-83 2-36 (205)
276 PRK13900 type IV secretion sys 87.0 1.7 4.4E-05 23.2 5.2 28 66-93 160-187 (332)
277 cd01134 V_A-ATPase_A V/A-type 86.9 1.7 4.3E-05 23.2 5.1 24 67-90 158-181 (369)
278 PRK09361 radB DNA repair and r 86.5 2.6 6.7E-05 22.0 7.0 22 68-89 25-47 (224)
279 KOG1970 consensus 86.4 2.7 6.8E-05 22.0 9.6 107 64-179 108-239 (634)
280 smart00350 MCM minichromosome 86.4 0.99 2.5E-05 24.7 3.8 105 68-213 238-352 (509)
281 PRK09452 potA putrescine/sperm 86.3 2.7 6.9E-05 21.9 7.1 74 129-202 155-255 (378)
282 PRK10522 multidrug transporter 86.3 2.4 6E-05 22.3 5.7 20 319-338 455-474 (547)
283 PTZ00243 ABC transporter; Prov 86.2 0.95 2.4E-05 24.8 3.6 112 68-179 688-842 (1560)
284 KOG3928 consensus 86.0 0.92 2.3E-05 24.9 3.5 30 64-93 177-206 (461)
285 pfam01443 Viral_helicase1 Vira 85.9 1.6 4E-05 23.4 4.6 79 69-160 1-80 (226)
286 pfam07693 KAP_NTPase KAP famil 85.9 2.8 7.2E-05 21.8 9.8 29 64-92 18-46 (301)
287 pfam01580 FtsK_SpoIIIE FtsK/Sp 85.8 1.2 3.2E-05 24.1 4.0 23 68-90 40-62 (202)
288 TIGR01447 recD exodeoxyribonuc 85.7 0.47 1.2E-05 26.8 1.8 100 69-181 245-397 (753)
289 PRK10646 putative ATPase; Prov 85.5 1 2.6E-05 24.6 3.5 88 67-184 29-117 (153)
290 cd03261 ABC_Org_Solvent_Resist 85.3 3 7.7E-05 21.6 9.2 25 67-91 27-51 (235)
291 cd03293 ABC_NrtD_SsuB_transpor 85.2 3.1 7.8E-05 21.6 9.5 25 67-91 31-55 (220)
292 PRK06871 DNA polymerase III su 84.9 0.73 1.9E-05 25.5 2.5 131 66-213 23-165 (324)
293 KOG3859 consensus 84.8 0.47 1.2E-05 26.8 1.4 98 193-298 165-277 (406)
294 PRK11650 ugpC glycerol-3-phosp 84.7 3.2 8.2E-05 21.4 7.6 50 130-179 143-194 (358)
295 PRK11144 modC molybdate transp 84.7 3.2 8.2E-05 21.4 10.0 56 129-184 136-193 (352)
296 PRK13633 cobalt transporter AT 84.6 2.1 5.4E-05 22.6 4.8 24 68-91 39-62 (281)
297 COG0802 Predicted ATPase or ki 84.6 2 5.2E-05 22.7 4.7 89 66-184 25-114 (149)
298 TIGR02782 TrbB_P P-type conjug 84.5 2.5 6.4E-05 22.1 5.1 28 65-92 138-165 (315)
299 KOG0054 consensus 84.4 2.9 7.4E-05 21.7 5.4 114 67-180 548-704 (1381)
300 COG1203 CRISPR-associated heli 84.3 1.5 3.9E-05 23.5 3.9 44 141-184 340-384 (733)
301 cd01394 radB RadB. The archaea 84.2 3.4 8.6E-05 21.3 8.1 19 69-87 22-40 (218)
302 COG2766 PrkA Putative Ser prot 84.1 0.44 1.1E-05 26.9 1.1 24 64-87 101-124 (649)
303 PRK11819 putative ABC transpor 84.1 3.3 8.3E-05 21.4 5.5 45 129-177 171-218 (556)
304 TIGR02673 FtsE cell division A 83.8 3.5 9E-05 21.2 7.7 108 69-176 31-193 (215)
305 PRK10584 putative ABC transpor 83.7 3.6 9.1E-05 21.2 9.6 27 66-92 36-62 (228)
306 CHL00081 chlI Mg-protoporyphyr 83.6 1.7 4.4E-05 23.2 3.9 27 66-92 33-59 (347)
307 cd03292 ABC_FtsE_transporter F 83.5 3.6 9.3E-05 21.1 10.8 24 68-91 29-52 (214)
308 PRK05703 flhF flagellar biosyn 83.4 3.7 9.3E-05 21.1 10.4 59 287-348 330-390 (412)
309 pfam03215 Rad17 Rad17 cell cyc 83.1 3.8 9.6E-05 21.0 10.3 98 66-176 45-169 (490)
310 PRK07471 DNA polymerase III su 82.9 3.8 9.7E-05 21.0 6.6 160 137-339 137-300 (363)
311 PRK10762 D-ribose transporter 82.9 3.8 9.7E-05 21.0 5.5 54 129-182 149-203 (501)
312 cd02030 NDUO42 NADH:Ubiquinone 82.8 3.9 9.8E-05 20.9 7.0 22 69-90 2-23 (219)
313 pfam06414 Zeta_toxin Zeta toxi 82.7 2.1 5.3E-05 22.7 4.1 31 61-91 7-37 (191)
314 COG5245 DYN1 Dynein, heavy cha 82.7 0.67 1.7E-05 25.8 1.5 24 63-86 1491-1514(3164)
315 TIGR00763 lon ATP-dependent pr 82.5 0.61 1.6E-05 26.0 1.3 134 68-230 452-614 (941)
316 COG1100 GTPase SAR1 and relate 82.1 1.3 3.3E-05 23.9 2.8 26 68-93 7-32 (219)
317 TIGR02788 VirB11 P-type DNA tr 82.1 1.6 4E-05 23.4 3.2 33 62-94 154-186 (328)
318 TIGR02528 EutP ethanolamine ut 82.0 0.54 1.4E-05 26.4 0.9 19 69-87 3-21 (144)
319 COG4987 CydC ABC-type transpor 82.0 4.1 0.00011 20.7 8.9 23 66-88 364-386 (573)
320 cd03278 ABC_SMC_barmotin Barmo 81.9 4.2 0.00011 20.7 9.0 22 66-87 21-43 (197)
321 COG2884 FtsE Predicted ATPase 81.8 4.2 0.00011 20.7 6.4 46 131-176 147-193 (223)
322 PRK08533 flagellar accessory p 81.8 4.2 0.00011 20.7 8.9 114 67-180 25-163 (230)
323 pfam03266 DUF265 Protein of un 81.8 1.4 3.6E-05 23.7 3.0 130 69-211 2-156 (168)
324 KOG3889 consensus 81.6 3.5 9E-05 21.2 4.9 159 126-305 96-266 (371)
325 COG2019 AdkA Archaeal adenylat 81.3 2.6 6.6E-05 22.1 4.1 45 66-112 4-48 (189)
326 pfam06068 TIP49 TIP49 C-termin 81.1 3.7 9.4E-05 21.1 4.9 27 65-91 49-75 (395)
327 TIGR03522 GldA_ABC_ATP gliding 81.1 4.4 0.00011 20.6 9.7 53 129-182 141-194 (301)
328 PRK13648 cbiO cobalt transport 80.6 4.6 0.00012 20.4 9.4 24 68-91 37-60 (269)
329 COG2274 SunT ABC-type bacterio 80.4 4.7 0.00012 20.4 6.8 115 65-181 496-669 (709)
330 PRK13695 putative NTPase; Prov 80.4 1.8 4.5E-05 23.1 3.0 24 68-91 5-28 (174)
331 COG4988 CydD ABC-type transpor 80.3 4.7 0.00012 20.4 6.5 65 131-214 466-531 (559)
332 PRK06851 hypothetical protein; 80.2 1.3 3.3E-05 23.9 2.3 42 45-90 14-55 (368)
333 TIGR03238 dnd_assoc_3 dnd syst 79.9 3.8 9.6E-05 21.0 4.6 25 64-88 30-54 (504)
334 PRK05800 cobU adenosylcobinami 79.7 2.6 6.5E-05 22.1 3.7 18 69-86 4-21 (170)
335 KOG0990 consensus 79.7 2 5.2E-05 22.7 3.2 90 68-182 64-173 (360)
336 PRK11701 phnK phosphonates tra 79.6 5 0.00013 20.3 10.0 25 68-92 34-58 (258)
337 PRK13851 type IV secretion sys 79.4 2.3 5.7E-05 22.4 3.3 28 66-93 162-189 (343)
338 PRK07276 DNA polymerase III su 79.4 5 0.00013 20.2 6.0 131 69-218 26-168 (290)
339 PRK13909 putative recombinatio 79.3 5.1 0.00013 20.2 7.6 41 128-168 314-354 (911)
340 TIGR02237 recomb_radB DNA repa 79.2 0.91 2.3E-05 24.9 1.3 11 71-81 17-27 (223)
341 pfam04851 ResIII Type III rest 79.1 4.8 0.00012 20.4 4.9 88 19-166 2-89 (103)
342 PRK05342 clpX ATP-dependent pr 79.0 5.2 0.00013 20.1 8.1 29 65-93 108-136 (411)
343 COG2804 PulE Type II secretory 78.9 2.6 6.6E-05 22.1 3.5 114 261-381 219-387 (500)
344 cd01123 Rad51_DMC1_radA Rad51_ 78.6 1.8 4.6E-05 23.1 2.6 24 66-89 18-43 (235)
345 PRK05201 hslU ATP-dependent pr 78.5 5.3 0.00014 20.0 7.2 70 8-92 7-76 (442)
346 cd01128 rho_factor Transcripti 78.4 1.7 4.4E-05 23.2 2.5 24 67-90 17-40 (249)
347 pfam00493 MCM MCM2/3/5 family. 78.4 2.3 5.8E-05 22.4 3.1 24 68-91 59-82 (327)
348 cd03219 ABC_Mj1267_LivG_branch 78.0 5.6 0.00014 19.9 6.3 25 68-92 28-52 (236)
349 cd03296 ABC_CysA_sulfate_impor 77.6 5.7 0.00015 19.9 11.3 24 68-91 30-53 (239)
350 TIGR01249 pro_imino_pep_1 prol 77.3 1.2 3.1E-05 24.1 1.4 109 68-204 30-166 (310)
351 PRK07993 DNA polymerase III su 77.1 3.2 8.2E-05 21.4 3.5 133 65-213 23-167 (334)
352 pfam04310 MukB MukB N-terminal 77.0 1 2.6E-05 24.6 1.0 33 68-101 29-61 (227)
353 PRK11664 ATP-dependent RNA hel 77.0 5.9 0.00015 19.8 10.8 135 68-216 22-181 (812)
354 COG1224 TIP49 DNA helicase TIP 76.5 2.2 5.7E-05 22.4 2.6 27 65-91 64-90 (450)
355 COG1131 CcmA ABC-type multidru 76.5 6.1 0.00016 19.7 6.1 52 130-181 145-198 (293)
356 PRK10689 transcription-repair 76.3 6.2 0.00016 19.6 7.8 24 68-91 16-39 (1148)
357 pfam00437 GSPII_E Type II/IV s 76.3 3.5 8.8E-05 21.2 3.5 31 178-208 112-143 (283)
358 KOG0480 consensus 75.9 3.7 9.4E-05 21.1 3.6 252 63-340 372-697 (764)
359 pfam03796 DnaB_C DnaB-like hel 75.7 6.4 0.00016 19.5 8.4 19 69-87 22-40 (186)
360 PRK11288 araG L-arabinose tran 75.6 6.5 0.00016 19.5 5.5 54 129-182 148-202 (501)
361 TIGR00382 clpX ATP-dependent C 75.3 3.2 8.1E-05 21.5 3.1 205 68-308 154-387 (452)
362 COG5192 BMS1 GTP-binding prote 75.0 6 0.00015 19.7 4.5 100 62-187 65-178 (1077)
363 PRK01172 ski2-like helicase; P 74.9 6.7 0.00017 19.4 11.8 140 6-182 8-181 (674)
364 PRK01156 chromosome segregatio 74.9 2.6 6.7E-05 22.0 2.6 39 288-330 817-855 (895)
365 cd03264 ABC_drug_resistance_li 74.6 6.8 0.00017 19.4 9.7 21 71-91 30-50 (211)
366 cd01129 PulE-GspE PulE/GspE Th 74.6 6.9 0.00017 19.4 4.8 122 66-197 79-206 (264)
367 pfam03237 Terminase_6 Terminas 74.6 6.1 0.00015 19.7 4.4 112 71-183 2-138 (380)
368 cd03225 ABC_cobalt_CbiO_domain 74.5 6.9 0.00018 19.3 6.1 24 68-91 29-52 (211)
369 PRK08853 DNA polymerase III su 74.4 3.2 8.1E-05 21.5 2.9 148 1-211 1-176 (717)
370 pfam05272 VirE Virulence-assoc 74.3 3.2 8.1E-05 21.5 2.9 123 68-245 54-191 (198)
371 PRK10851 sulfate/thiosulfate t 74.3 7 0.00018 19.3 11.4 68 130-197 145-239 (352)
372 cd03114 ArgK-like The function 74.0 1.7 4.4E-05 23.1 1.5 21 70-90 3-23 (148)
373 TIGR02031 BchD-ChlD magnesium 73.9 3.2 8.1E-05 21.5 2.8 105 66-174 17-160 (705)
374 cd03215 ABC_Carb_Monos_II This 73.7 7.2 0.00018 19.2 5.9 115 67-182 27-166 (182)
375 KOG0057 consensus 73.6 7.2 0.00018 19.2 7.4 21 71-91 285-305 (591)
376 cd02022 DPCK Dephospho-coenzym 73.6 2.5 6.3E-05 22.2 2.2 20 69-88 2-21 (179)
377 PRK10246 exonuclease subunit S 73.5 3.1 7.9E-05 21.5 2.7 16 71-86 35-50 (1047)
378 PRK10536 hypothetical protein; 73.3 2.5 6.3E-05 22.2 2.1 134 67-211 75-244 (262)
379 pfam05970 DUF889 PIF1 helicase 73.2 2.1 5.4E-05 22.6 1.8 95 73-177 1-119 (418)
380 cd04153 Arl5_Arl8 Arl5/Arl8 su 72.9 4.2 0.00011 20.7 3.3 35 49-87 2-36 (174)
381 KOG0478 consensus 72.9 7.5 0.00019 19.1 4.6 122 45-185 437-574 (804)
382 COG4778 PhnL ABC-type phosphon 72.8 4 0.0001 20.9 3.1 27 65-91 36-62 (235)
383 PRK11889 flhF flagellar biosyn 72.8 7.6 0.00019 19.1 9.3 69 278-347 290-368 (436)
384 PRK13635 cbiO cobalt transport 72.7 7.6 0.00019 19.1 6.0 25 68-92 35-59 (279)
385 PRK06964 DNA polymerase III su 72.3 7.7 0.0002 19.0 5.2 133 66-213 21-191 (342)
386 cd03235 ABC_Metallic_Cations A 72.3 7.8 0.0002 19.0 5.9 26 67-92 26-51 (213)
387 PRK13537 lipooligosaccharide t 72.3 7.8 0.0002 19.0 6.3 54 129-182 144-198 (304)
388 PRK13700 conjugal transfer pro 72.3 3.2 8.2E-05 21.4 2.6 31 63-93 182-212 (732)
389 PRK13542 consensus 72.0 7.9 0.0002 19.0 6.4 25 68-92 46-70 (224)
390 COG1219 ClpX ATP-dependent pro 72.0 4.6 0.00012 20.5 3.3 28 66-93 97-124 (408)
391 cd01131 PilT Pilus retraction 72.0 3.3 8.3E-05 21.4 2.5 82 67-149 1-84 (198)
392 COG1643 HrpA HrpA-like helicas 71.9 7.9 0.0002 19.0 13.6 135 65-217 64-228 (845)
393 PRK13894 conjugal transfer ATP 71.8 4.3 0.00011 20.7 3.1 26 66-91 149-174 (320)
394 COG2401 ABC-type ATPase fused 71.6 8 0.0002 18.9 4.4 22 222-243 311-332 (593)
395 cd03240 ABC_Rad50 The catalyti 71.5 8.1 0.00021 18.9 11.5 22 69-90 25-46 (204)
396 PRK13768 GTPase; Provisional 71.4 4.7 0.00012 20.4 3.2 25 67-91 3-27 (253)
397 cd01125 repA Hexameric Replica 71.2 2.5 6.3E-05 22.2 1.7 16 70-85 5-20 (239)
398 COG5265 ATM1 ABC-type transpor 71.0 8.3 0.00021 18.8 7.5 25 67-91 290-314 (497)
399 cd02875 GH18_chitobiase Chitob 70.9 7 0.00018 19.3 4.0 44 160-204 67-111 (358)
400 COG3267 ExeA Type II secretory 70.4 8.5 0.00022 18.7 9.2 142 69-224 54-216 (269)
401 KOG1969 consensus 70.2 6 0.00015 19.7 3.5 135 60-218 320-473 (877)
402 PRK03918 chromosome segregatio 70.2 3.9 9.9E-05 20.9 2.6 100 238-346 751-862 (882)
403 cd01122 GP4d_helicase GP4d_hel 70.0 8.7 0.00022 18.7 5.5 21 69-89 33-53 (271)
404 TIGR01192 chvA glucan exporter 69.8 8.8 0.00022 18.7 7.6 112 65-176 360-527 (592)
405 pfam00625 Guanylate_kin Guanyl 69.7 5.9 0.00015 19.8 3.4 25 68-92 3-27 (182)
406 PTZ00112 origin recognition co 69.7 3.1 7.9E-05 21.6 2.0 137 64-206 291-458 (650)
407 PRK07413 hypothetical protein; 69.6 8.3 0.00021 18.8 4.2 166 68-249 21-228 (382)
408 TIGR01618 phage_P_loop phage n 69.4 2.2 5.6E-05 22.5 1.2 116 67-223 14-158 (229)
409 cd02027 APSK Adenosine 5'-phos 69.4 9 0.00023 18.6 6.4 108 69-219 2-112 (149)
410 KOG0927 consensus 69.3 9 0.00023 18.6 6.6 46 131-178 231-277 (614)
411 PRK13833 conjugal transfer pro 69.0 5.4 0.00014 20.0 3.1 25 67-91 145-169 (323)
412 PRK03839 putative kinase; Prov 68.7 7 0.00018 19.3 3.6 34 69-105 3-36 (180)
413 COG1674 FtsK DNA segregation A 68.5 9.4 0.00024 18.5 10.3 69 140-221 640-715 (858)
414 TIGR02324 CP_lyasePhnL phospho 68.4 4.8 0.00012 20.4 2.7 110 64-174 32-203 (224)
415 pfam02283 CobU Cobinamide kina 68.3 7.1 0.00018 19.3 3.6 22 69-90 1-22 (166)
416 TIGR00634 recN DNA repair prot 68.3 3.2 8.1E-05 21.5 1.8 19 293-311 515-533 (605)
417 COG4133 CcmA ABC-type transpor 68.2 9.5 0.00024 18.5 8.5 116 65-180 27-190 (209)
418 PRK11831 putative ABC transpor 68.2 9.5 0.00024 18.5 5.9 52 130-181 153-206 (269)
419 PTZ00265 multidrug resistance 68.2 9.5 0.00024 18.5 6.8 24 64-87 409-432 (1467)
420 PRK00081 coaE dephospho-CoA ki 68.1 4 0.0001 20.8 2.3 20 69-88 5-24 (199)
421 PRK12608 transcription termina 68.1 6 0.00015 19.7 3.2 33 141-184 166-200 (379)
422 TIGR00957 MRP_assoc_pro multi 67.9 3.3 8.3E-05 21.4 1.8 74 8-90 610-691 (1542)
423 PRK04296 thymidine kinase; Pro 67.8 4.8 0.00012 20.4 2.6 70 136-215 77-146 (197)
424 pfam01121 CoaE Dephospho-CoA k 67.5 4.1 0.0001 20.8 2.2 20 69-88 3-22 (179)
425 TIGR00960 3a0501s02 Type II (G 67.3 5.7 0.00014 19.9 2.9 108 68-175 31-193 (216)
426 PRK07132 DNA polymerase III su 66.6 10 0.00026 18.3 5.9 124 66-212 20-150 (303)
427 cd00984 DnaB_C DnaB helicase C 66.6 10 0.00026 18.3 8.9 22 69-90 16-38 (242)
428 COG0210 UvrD Superfamily I DNA 66.4 10 0.00026 18.2 5.1 82 130-218 204-285 (655)
429 COG0378 HypB Ni2+-binding GTPa 66.4 3.6 9.1E-05 21.2 1.8 24 67-90 14-37 (202)
430 TIGR03263 guanyl_kin guanylate 66.3 7.7 0.0002 19.1 3.4 24 68-91 3-26 (180)
431 TIGR03185 DNA_S_dndD DNA sulfu 66.2 6.3 0.00016 19.6 3.0 39 68-106 30-73 (650)
432 pfam02456 Adeno_IVa2 Adenoviru 66.1 5 0.00013 20.2 2.5 24 66-89 87-110 (370)
433 PRK11747 dinG ATP-dependent DN 66.0 10 0.00027 18.2 6.9 54 4-81 8-62 (697)
434 COG0630 VirB11 Type IV secreto 66.0 8.2 0.00021 18.9 3.5 110 65-183 142-255 (312)
435 cd03255 ABC_MJ0796_Lo1CDE_FtsE 65.8 11 0.00027 18.2 8.8 49 131-179 150-200 (218)
436 PRK00300 gmk guanylate kinase; 65.4 8.1 0.00021 18.9 3.4 26 67-92 8-33 (208)
437 PRK09493 glnQ glutamine ABC tr 65.3 11 0.00028 18.1 5.9 24 68-91 29-52 (240)
438 COG4913 Uncharacterized protei 65.2 5.5 0.00014 20.0 2.5 27 298-326 1021-1047(1104)
439 PRK10869 recombination and rep 65.2 5.1 0.00013 20.2 2.3 21 70-90 26-46 (553)
440 PRK09984 phosphonate/organopho 65.0 11 0.00028 18.1 5.9 52 129-180 160-213 (262)
441 cd03265 ABC_DrrA DrrA is the A 65.0 11 0.00028 18.1 5.9 52 130-181 140-193 (220)
442 PRK08118 topology modulation p 64.9 7.7 0.0002 19.0 3.2 26 68-93 3-28 (167)
443 PRK08691 DNA polymerase III su 64.8 3.2 8.1E-05 21.5 1.3 159 1-211 1-176 (704)
444 PRK07594 type III secretion sy 64.6 5 0.00013 20.2 2.2 26 66-91 155-180 (433)
445 PRK09700 D-allose transporter 64.6 11 0.00028 18.0 5.6 56 129-184 153-209 (510)
446 pfam03029 ATP_bind_1 Conserved 64.4 3.6 9.2E-05 21.1 1.5 21 72-92 2-22 (234)
447 TIGR00101 ureG urease accessor 64.3 5.3 0.00013 20.1 2.3 24 69-92 4-27 (199)
448 COG0419 SbcC ATPase involved i 64.2 6 0.00015 19.7 2.6 23 69-91 28-50 (908)
449 KOG1942 consensus 64.2 4.7 0.00012 20.4 2.0 27 64-90 62-88 (456)
450 KOG0056 consensus 64.1 11 0.00029 18.0 9.0 21 198-218 513-533 (790)
451 PRK06067 flagellar accessory p 63.8 12 0.00029 17.9 6.9 26 66-91 32-58 (241)
452 pfam00448 SRP54 SRP54-type pro 63.7 12 0.0003 17.9 9.1 192 66-365 1-194 (196)
453 TIGR00929 VirB4_CagE type IV s 63.3 6.4 0.00016 19.5 2.6 73 139-219 754-833 (931)
454 cd01127 TrwB Bacterial conjuga 63.2 8.7 0.00022 18.7 3.2 29 61-89 37-65 (410)
455 PRK11607 potG putrescine trans 63.2 12 0.0003 17.9 8.0 72 130-201 158-256 (377)
456 TIGR02982 heterocyst_DevA ABC 63.2 6.1 0.00015 19.7 2.4 20 68-87 33-52 (220)
457 TIGR02640 gas_vesic_GvpN gas v 63.1 4.8 0.00012 20.3 1.9 120 67-211 22-183 (265)
458 pfam11004 DUF2843 Protein of u 63.0 7.8 0.0002 19.0 3.0 31 78-112 181-211 (281)
459 PRK10982 galactose/methyl gala 63.0 12 0.0003 17.8 5.6 54 130-183 143-197 (491)
460 TIGR00073 hypB hydrogenase acc 63.0 5.4 0.00014 20.0 2.2 28 68-95 36-63 (225)
461 COG0055 AtpD F0F1-type ATP syn 62.9 3 7.6E-05 21.6 0.8 23 69-91 150-172 (468)
462 cd03280 ABC_MutS2 MutS2 homolo 62.9 12 0.00031 17.8 9.6 97 65-181 27-152 (200)
463 cd03279 ABC_sbcCD SbcCD and ot 62.8 6.6 0.00017 19.5 2.6 25 68-92 30-54 (213)
464 COG4917 EutP Ethanolamine util 62.7 5 0.00013 20.3 1.9 77 68-188 3-84 (148)
465 smart00010 small_GTPase Small 62.6 8.1 0.00021 18.9 3.0 22 68-89 2-23 (124)
466 cd01892 Miro2 Miro2 subfamily. 62.6 7.6 0.00019 19.1 2.9 20 69-88 7-26 (169)
467 KOG0745 consensus 62.5 8.9 0.00023 18.6 3.2 28 66-93 226-253 (564)
468 PRK13830 conjugal transfer pro 62.3 6.9 0.00018 19.3 2.6 23 69-91 459-481 (818)
469 cd00071 GMPK Guanosine monopho 62.3 9.4 0.00024 18.5 3.3 24 69-92 2-25 (137)
470 PRK09694 hypothetical protein; 62.2 12 0.00032 17.7 4.8 49 136-184 438-486 (878)
471 cd02025 PanK Pantothenate kina 62.1 7.2 0.00018 19.2 2.6 21 70-90 3-23 (220)
472 pfam03308 ArgK ArgK protein. T 62.1 10 0.00025 18.3 3.4 23 68-90 31-53 (267)
473 COG4525 TauB ABC-type taurine 62.0 6.9 0.00018 19.3 2.5 27 66-92 31-57 (259)
474 pfam06048 DUF927 Domain of unk 62.0 12 0.00032 17.7 6.5 19 160-180 72-90 (284)
475 PRK05480 uridine kinase; Provi 61.8 8.2 0.00021 18.9 2.9 26 66-91 6-31 (209)
476 COG1198 PriA Primosomal protei 61.8 13 0.00032 17.7 8.3 49 138-188 312-367 (730)
477 smart00177 ARF ARF-like small 61.7 8.7 0.00022 18.7 3.0 31 48-86 3-33 (175)
478 PRK08149 ATP synthase SpaL; Va 61.6 7.2 0.00018 19.2 2.6 25 67-91 151-175 (427)
479 PRK10875 recD exonuclease V su 61.6 6.6 0.00017 19.4 2.4 40 139-181 260-300 (607)
480 PRK11231 fecE iron-dicitrate t 61.6 13 0.00032 17.7 6.0 67 129-213 146-214 (255)
481 PTZ00111 DNA replication licen 61.4 6.4 0.00016 19.6 2.3 99 68-184 495-605 (916)
482 cd01673 dNK Deoxyribonucleosid 61.4 10 0.00026 18.3 3.3 22 69-90 2-23 (193)
483 cd02023 UMPK Uridine monophosp 60.9 8.7 0.00022 18.7 2.9 23 69-91 2-24 (198)
484 cd03241 ABC_RecN RecN ATPase i 60.7 6.8 0.00017 19.4 2.3 23 70-92 25-47 (276)
485 TIGR03265 PhnT2 putative 2-ami 60.5 6.5 0.00017 19.5 2.2 111 68-178 32-193 (353)
486 COG3911 Predicted ATPase [Gene 60.3 6.8 0.00017 19.4 2.3 22 68-89 11-32 (183)
487 PRK13644 cbiO cobalt transport 60.2 13 0.00034 17.5 6.0 49 131-179 146-195 (274)
488 cd04155 Arl3 Arl3 subfamily. 60.1 12 0.00032 17.7 3.6 23 65-88 14-36 (173)
489 PRK13647 cbiO cobalt transport 60.1 13 0.00034 17.5 6.0 42 277-322 226-267 (273)
490 COG5440 Uncharacterized conser 60.1 13 0.00034 17.5 4.4 44 162-205 87-137 (161)
491 cd00544 CobU Adenosylcobinamid 59.9 8.3 0.00021 18.8 2.7 18 69-86 2-19 (169)
492 PRK10619 histidine/lysine/argi 59.7 14 0.00035 17.5 5.9 23 68-90 33-55 (257)
493 COG0466 Lon ATP-dependent Lon 59.7 8.6 0.00022 18.7 2.7 188 8-217 253-499 (782)
494 PRK09270 frcK putative fructos 59.7 10 0.00026 18.3 3.1 26 66-91 34-59 (230)
495 pfam00071 Ras Ras family. Incl 59.5 9.9 0.00025 18.4 3.0 21 69-89 2-22 (162)
496 cd01393 recA_like RecA is a b 59.5 6 0.00015 19.7 1.9 19 69-87 22-40 (226)
497 CHL00181 cbbX CbbX; Provisiona 59.2 13 0.00033 17.6 3.5 25 65-89 58-82 (287)
498 KOG0394 consensus 58.8 11 0.00027 18.1 3.1 22 66-87 9-30 (210)
499 COG3829 RocR Transcriptional r 58.7 14 0.00036 17.4 5.0 121 64-192 266-403 (560)
500 PRK13873 conjugal transfer ATP 58.7 9.5 0.00024 18.5 2.8 22 69-90 444-465 (815)
No 1
>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=100.00 E-value=0 Score=914.42 Aligned_cols=358 Identities=36% Similarity=0.621 Sum_probs=337.7
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 58999999997488778989999999999999998613543-33225664310246666668864998888877289999
Q gi|254781047|r 5 LVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQ-EQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLM 83 (404)
Q Consensus 5 ~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LM 83 (404)
++.++|+++|++|.+.+|++|.+++.+||+|+++|..+.+. +.+.++++|.+ +++..+||||||||+|||||||||
T Consensus 2 tP~~~Y~~~v~~g~l~~D~~Q~~a~~~L~~L~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~kGlYl~G~VGrGKTmLM 78 (361)
T pfam03969 2 TPPQRYTAQLQRGAIFPDVAQANAVPALDRLYQRLQAADFVRQSGAGGKLWGR---KRSHQPVRGLYLWGGVGRGKTHLM 78 (361)
T ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCC---CCCCCCCCEEEEECCCCCCHHHHH
T ss_conf 87999999986799999989999999999999999715565555234443157---887999986898899888699999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHH
Q ss_conf 99998578111468889999999999999971311224665578078999999613879998423204713588899999
Q gi|254781047|r 84 NLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLF 163 (404)
Q Consensus 84 dlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~ 163 (404)
|+||+++|+++|+|+|||+||++||++||++++ .+|||..||++++++++|||||||||+||||||||+|||
T Consensus 79 DlFy~~lp~~~K~R~HFh~FM~~vH~~l~~~~~--------~~dpl~~va~~l~~~~~lLCfDEFqV~DIaDAMIL~rLf 150 (361)
T pfam03969 79 DSFFESLPGERKRRTHFHRFMFRVHDELTTLQG--------GDDPLPIAADRFANEARLLCFDEFEVDDIGDAMILGRLF 150 (361)
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHC--------CCCCHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHH
T ss_conf 999986775344456678999999999999766--------776389999999725877997635616788899999999
Q ss_pred HHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHCCCCCCCEEEECCCHHHHHHHHHHH
Q ss_conf 99985496899817868677523874056689899999850508980473112211236783022035302268999999
Q gi|254781047|r 164 AALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMDKLW 243 (404)
Q Consensus 164 ~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DYR~~~~~~~~~y~~p~~~~~~~~l~~~f 243 (404)
+.||++||+||+|||++|++||+|||||++|+|||++|+++|+|++|+|++|||++...+.+.|++|.++++...++++|
T Consensus 151 ~~Lf~~gvvlV~TSN~~P~~LY~~GLqR~~FlPfI~ll~~~~~v~~l~~~~DYR~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (361)
T pfam03969 151 EALFARGVSLVATSNTAPEQLYRNGLNRQRFLPAIDLLESHFEVVRVDGPVDYRLRTLEQAPLWLYPLDGAAWAALDRLW 230 (361)
T ss_pred HHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99997797899808999899836874177889999999986789981598780546565565400578666689999999
Q ss_pred HHHCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 98604444677632763680899612202111101999852102468999998537889981898787246389998999
Q gi|254781047|r 244 AHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIM 323 (404)
Q Consensus 244 ~~l~~~~~~~~~~i~v~~gR~i~v~~~~~~va~f~F~eLC~~~lg~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~ 323 (404)
..++++.+....++.+ +||++++++++++|+||+|++||++|+|++||++||++|+||||+|||+|+..+.|+|||||+
T Consensus 231 ~~l~~~~~~~~~~l~v-~gR~i~v~~~~~~v~~f~F~~LC~~p~~~~DYl~ia~~f~~v~i~~VP~l~~~~~d~arRFI~ 309 (361)
T pfam03969 231 DALTLGEPQPLSTLEV-AARLARARAAGGDLVWFSFADLCLAPRHPSDYLALAERFSTVFLTDVPPMTRCSQDEARRFIA 309 (361)
T ss_pred HHHHCCCCCCCCCEEE-CCEEEEEHHHCCCEECCCHHHHHHCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 9970899899751104-463775021038850012888866558889999999869999988998899987089999999
Q ss_pred HHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 99998228982899807897880134676531348998988745242788972
Q gi|254781047|r 324 LIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLYEMFSAQYIGK 376 (404)
Q Consensus 324 LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~EMqS~~yl~~ 376 (404)
|||+|||++++|+++|+++|++| |.|++++|+|+||+|||+||||++||++
T Consensus 310 LID~lYd~~~kL~~sa~~~~~~L--y~g~~~~f~f~Rt~SRL~EM~s~~yl~r 360 (361)
T pfam03969 310 LVDELYDRHVKLVASAEAALDDL--YRGGRLAFEFQRTLSRLLEMQSEDYLAR 360 (361)
T ss_pred HHHHHHCCCCCEEEECCCCHHHH--CCCCCCHHHHHHHHHHHHHHCCHHHHHC
T ss_conf 99998407997899878999996--4898420110498799999687877626
No 2
>COG1485 Predicted ATPase [General function prediction only]
Probab=100.00 E-value=0 Score=870.90 Aligned_cols=361 Identities=38% Similarity=0.702 Sum_probs=343.0
Q ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 70058999999997488778989999999999999998613543332256643102466666688649988888772899
Q gi|254781047|r 2 SLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSM 81 (404)
Q Consensus 2 ~~~~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~ 81 (404)
...++.++|.++++.|.+.+|++|..++.+|++|++++.......+ .+.|+|++ .+.+|||+|+||||||||||
T Consensus 7 ~~~sp~~~y~~~~~~~~~~~D~aQ~~a~~~Ldrl~~~~~~~~~~~~-~l~~lf~r-----~~~~~~GlYl~GgVGrGKT~ 80 (367)
T COG1485 7 PTMSPVERYAQLVPAGTFQPDPAQPAAAAALDRLYDELVAPRSARK-ALGWLFGR-----DHGPVRGLYLWGGVGRGKTM 80 (367)
T ss_pred CCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCC-----CCCCCCEEEEECCCCCCHHH
T ss_conf 8779899999750567788886789999999999998626444555-21110036-----88888358888997864999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHH
Q ss_conf 99999985781114688899999999999999713112246655780789999996138799984232047135888999
Q gi|254781047|r 82 LMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSR 161 (404)
Q Consensus 82 LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~r 161 (404)
|||+||+++|..+|+|+|||+||.+||++|+.++| +.|||..+|++++++++|||||||+|+||||||||+|
T Consensus 81 LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g--------~~dpl~~iA~~~~~~~~vLCfDEF~VtDI~DAMiL~r 152 (367)
T COG1485 81 LMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQG--------QTDPLPPIADELAAETRVLCFDEFEVTDIADAMILGR 152 (367)
T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC--------CCCCCHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHH
T ss_conf 99999865876456655077999999999999718--------8886579999998417889863036237578899999
Q ss_pred HHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHCCCCCCCEEEECCCHHHHHHHHH
Q ss_conf 99999854968998178686775238740566898999998505089804731122112367830220353022689999
Q gi|254781047|r 162 LFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMDK 241 (404)
Q Consensus 162 l~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DYR~~~~~~~~~y~~p~~~~~~~~l~~ 241 (404)
||++||.+||+||+|||++|++||+|||||++|||||++||++|+|+++||++|||++...++++|++|.+.++++.|++
T Consensus 153 L~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~v~~vD~~~DYR~r~l~~a~~y~~Pl~~~~~~~l~~ 232 (367)
T COG1485 153 LLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEVVNVDGPVDYRLRKLEQAPVYLTPLDAEAEAALDK 232 (367)
T ss_pred HHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCEEECCCCHHHHHHHHH
T ss_conf 99999977968999589996785446025776377999998754799705876623566666744554786788999999
Q ss_pred HHHHHCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHH
Q ss_conf 99986044446776327636808996122021111019998521024689999985378899818987872463899989
Q gi|254781047|r 242 LWAHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFDVVIINDIPLLKEDRKDWIKRF 321 (404)
Q Consensus 242 ~f~~l~~~~~~~~~~i~v~~gR~i~v~~~~~~va~f~F~eLC~~~lg~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRF 321 (404)
+|..++++.+..+..+.+ .||+|.+++.+++++||+|.+||..|+|+.||++||++||||+|+|||+|+...+|+||||
T Consensus 233 ~~~~ls~~~~~~~~~l~i-~gR~i~~~~~~~~~~~f~f~~Lc~~p~s~~DYl~l~~~f~tv~l~~vp~m~~~~~~~arRF 311 (367)
T COG1485 233 LWAALSDGAPEAAANLEI-KGREIRVPAVAGGLLWFDFAQLCEAPRSASDYLALAERFHTVFLTDVPQMDPLDRDEARRF 311 (367)
T ss_pred HHHHHCCCCCCCCCHHHC-CCCEEECCCCCCCCHHCCHHHHHHCCCCHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 998733587667740112-5831002355686012239988528577888999986234899868877880226899999
Q ss_pred HHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCC
Q ss_conf 9999998228982899807897880134676531348998988745242788972444
Q gi|254781047|r 322 IMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLYEMFSAQYIGKNKI 379 (404)
Q Consensus 322 I~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~EMqS~~yl~~~~~ 379 (404)
|+|||++||++++|++||+++|++| |+++.++|||+||+|||.||||.+|+..+|+
T Consensus 312 I~lVD~lYD~~vkL~~Sae~~~~~L--y~~~~~afeF~Rt~SRL~EMqS~~yl~~~~~ 367 (367)
T COG1485 312 IALVDELYDRGVKLVASAEVPLNEL--YQGGRLAFEFQRTLSRLQEMQSEEYLGIPHR 367 (367)
T ss_pred HHHHHHHHHCCCCEEEECCCCHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999864884799756789995--2572144588999999999888886415579
No 3
>KOG2383 consensus
Probab=100.00 E-value=0 Score=823.19 Aligned_cols=377 Identities=36% Similarity=0.622 Sum_probs=326.6
Q ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCC------CCHHHHHHHCCC------CC-----CCC
Q ss_conf 7005899999999748877898999999999999999861-35433------322566431024------66-----666
Q gi|254781047|r 2 SLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYK-QQKQE------QGIFSWLWNLRG------IK-----RKY 63 (404)
Q Consensus 2 ~~~~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~-~~~~~------~~~~~~~~~~~~------~~-----~~~ 63 (404)
....+.+.|..+|+.|.+..|+.|..++..+++|+.+..+ ++|.- ....+|.+.... .. ..+
T Consensus 32 ~~~tpl~~y~k~V~~g~l~~d~yq~~~~~~~~~L~~~~~e~y~p~~~~~~~~~e~~r~i~~l~k~~~~~k~~~~~a~~~~ 111 (467)
T KOG2383 32 FLLTPLKEYSKLVNTGTLKSDPYQRKTVSAFERLYHELIEYYDPRLKQWSAKREEGRWIFELKKSFDDGKLDTPNASGQP 111 (467)
T ss_pred CCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 13686667776742475347811210189999997646663695211565312356688999988751576786545788
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----CCCCHHHHHHHHHH
Q ss_conf 6886499888887728999999998578-11146888999999999999997131122466-----55780789999996
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVP-IEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEI-----LESDPIPLVASSIA 137 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~-~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~-----~~~dpl~~va~~l~ 137 (404)
.+||||||||+|||||||||||||+++| +.+|+|+|||+||+.||.++|+++++.+..+. ..-||++.||++|+
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eIa 191 (467)
T KOG2383 112 GPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEIA 191 (467)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99846899635675446778877632784013444039999999999999999841654655333466786178999985
Q ss_pred CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHH
Q ss_conf 13879998423204713588899999999854968998178686775238740566898999998505089804731122
Q gi|254781047|r 138 LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYR 217 (404)
Q Consensus 138 ~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DYR 217 (404)
.++.|||||||||+||||||||+|||++||++|||+||||||+|+|||+|||||+.|+|||.+|+++|.|+.|||+.|||
T Consensus 192 ~ea~lLCFDEfQVTDVADAmiL~rLf~~Lf~~GvVlvATSNR~P~dLYknGlQR~~F~PfI~~L~~rc~vi~ldS~vDYR 271 (467)
T KOG2383 192 EEAILLCFDEFQVTDVADAMILKRLFEHLFKNGVVLVATSNRAPEDLYKNGLQRENFIPFIALLEERCKVIQLDSGVDYR 271 (467)
T ss_pred HHCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHEEEECCCCCCHH
T ss_conf 50303431201013688999999999999738759998278985888624302553006899998763688658853353
Q ss_pred HCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCC-CCCCEEEECCEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHH
Q ss_conf 11236783022035302268999999986044446-77632763680899612202111101999852102468999998
Q gi|254781047|r 218 RKEQSILPIYMTPLNSYNRVLMDKLWAHITKGKKS-LSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIA 296 (404)
Q Consensus 218 ~~~~~~~~~y~~p~~~~~~~~l~~~f~~l~~~~~~-~~~~i~v~~gR~i~v~~~~~~va~f~F~eLC~~~lg~~DYi~Ia 296 (404)
+..-+....|+.+...+.+..+++.|+.+..+... ....++++.||++.+|.+|++||||+|++||++|+|++||+.||
T Consensus 272 ~~~~~~~~~~yf~~~~d~~~~l~~~fk~~~~dq~d~~~~~~l~v~GR~l~vpk~cg~VA~ftFeeLC~rPlgAaDYL~la 351 (467)
T KOG2383 272 RKAKSAGENYYFISETDVETVLKEWFKLLAADQNDGTRQRTLVVFGRKLIVPKACGGVADFTFEELCGRPLGAADYLGLA 351 (467)
T ss_pred HCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCEEEECCCCCCCCCCCHHHHCCCCCCHHHHHHHH
T ss_conf 30577775367248002789999999997435888777742267522677025578703122998708954247799997
Q ss_pred HHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCC---------------------------
Q ss_conf 53788998189878724638999899999998228982899807897880134---------------------------
Q gi|254781047|r 297 NRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPY--------------------------- 349 (404)
Q Consensus 297 ~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~~~--------------------------- 349 (404)
++||||+|+|||+|+.+++|++||||+|||++||++++|+|||++|+++||+.
T Consensus 352 k~fhti~v~dIP~lsl~~r~~~rRFITliD~lYd~~~rlv~sa~~p~~~Lf~~~~~~e~ls~s~r~~mddl~iks~~~~~ 431 (467)
T KOG2383 352 KNFHTIIVRDIPQLSLENRDQARRFITLIDALYDNHVRLVCSAATPLEELFQFTGHSEALSDSPRTLMDDLGIKSDSAGG 431 (467)
T ss_pred HHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCC
T ss_conf 64245776065111057788776787898888635723896478878987445675321255753110011334567665
Q ss_pred ----CCCCCCHHHHHHHHHHHHHCCHHHHHHCC
Q ss_conf ----67653134899898874524278897244
Q gi|254781047|r 350 ----KLRKGAFEIQRTVSRLYEMFSAQYIGKNK 378 (404)
Q Consensus 350 ----~~~~~~F~f~Rt~SRL~EMqS~~yl~~~~ 378 (404)
.|.++.|+|+||+|||+|||++.|+..+.
T Consensus 432 ~~mf~g~EE~FAf~RtlSRL~eMqt~~y~~~~~ 464 (467)
T KOG2383 432 SPMFSGEEEGFAFDRTLSRLYEMQTELYWEQPY 464 (467)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 542256188888888988999850210033566
No 4
>PRK08939 primosomal protein DnaI; Reviewed
Probab=99.52 E-value=2e-12 Score=98.95 Aligned_cols=139 Identities=19% Similarity=0.294 Sum_probs=103.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 68864998888877289999999985781114--6888999999999999997131122466557807899999961387
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKK--CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR 141 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K--~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~ 141 (404)
...||+||||++|+|||+||....+.+..+.+ .=+|+-+|+.++-+.+. .+...... +..++++
T Consensus 155 ~~~kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~v~~p~~~~~lK~s~~-------------d~s~~~~i-~~~k~~~ 220 (306)
T PRK08939 155 EKVKGLYLYGDFGVGKTYLLAAIANELAKKGVSSTLVHFPEFIRELKNAIS-------------DGSVKEKI-DAVKEAP 220 (306)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHC-------------CCCHHHHH-HHHHCCC
T ss_conf 888778898999998999999999999986992999875999999999864-------------89889999-9984499
Q ss_pred EEEEEEEEECCCHHHH---HHHHHHHHHHHCCCEEEEECCCCHHHHH------CCCCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf 9998423204713588---8999999998549689981786867752------387405668989999985050898047
Q gi|254781047|r 142 VLCFDEFMITNIADAI---ILSRLFAALFSHGCIIVMTSNFIPENLY------KDEINRNVLVSFIELLEKKLEIISLDS 212 (404)
Q Consensus 142 lLCfDEF~V~DiaDAm---il~rl~~~lf~~gv~lV~TSN~~P~dLY------~~GLqR~~FlPfI~~lk~~~~V~~l~~ 212 (404)
||-+|.+=-+.++.-. +|+-+++.=..++...++|||..|++|= ++|-..-.=..-++-|+.-|..+.|.|
T Consensus 221 vLiLDDiGaE~~t~W~rd~vl~~IL~~Rm~~~lPTffTSN~~~~eLe~~l~~~~~~~e~~ka~RimeRI~~l~~~v~l~G 300 (306)
T PRK08939 221 VLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHLAYTQRGDETVKAARIMERIRYLAKEVHLEG 300 (306)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCEEEEECC
T ss_conf 89984446542677789989999999999749997997799999999998632699537999999999998573587147
Q ss_pred CCHHH
Q ss_conf 31122
Q gi|254781047|r 213 GQDYR 217 (404)
Q Consensus 213 ~~DYR 217 (404)
.+.|
T Consensus 301 -~nrR 304 (306)
T PRK08939 301 -KNRR 304 (306)
T ss_pred -CCCC
T ss_conf -7778
No 5
>PRK08116 hypothetical protein; Validated
Probab=99.46 E-value=2.7e-12 Score=98.09 Aligned_cols=139 Identities=15% Similarity=0.182 Sum_probs=97.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE
Q ss_conf 8864998888877289999999985781114--68889999999999999971311224665578078999999613879
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKK--CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRV 142 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K--~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~l 142 (404)
..+|+||||+||+|||+|+-..-..+-...+ .-+++-+|+.++.+...... .+.-..+.+. ..+++|
T Consensus 107 ~~~GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~~ll~~lk~~~~~~~----------~~~~~e~l~~-l~~~dL 175 (262)
T PRK08116 107 ESVGLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVPELLNRIKSTYNSEG----------KEDENEIIRA-LDNADL 175 (262)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCC----------CHHHHHHHHH-HHCCCE
T ss_conf 68618998989998999999999999987993999889999999999986356----------1019999998-612998
Q ss_pred EEEEEEEECCCHHHH--HHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHCC
Q ss_conf 998423204713588--899999999854968998178686775238740566898999998505089804731122112
Q gi|254781047|r 143 LCFDEFMITNIADAI--ILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKE 220 (404)
Q Consensus 143 LCfDEF~V~DiaDAm--il~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DYR~~~ 220 (404)
|-+|++-.....+.. .|-.++..-...+-.+|+|||.+|++|-.- + =-...+-|...|..+++. |.|||+..
T Consensus 176 LIiDDlG~e~~t~w~~e~lf~IIn~Ry~~~kptIiTTNl~~~eL~~~-~----~~Ri~sRl~e~~~~v~~~-G~d~R~~~ 249 (262)
T PRK08116 176 LILDDLGAEKDTEWVREKLYNIIDSRYRKGLPTIFTTNLSLEELKNQ-Y----GKRTYSRILEMCTPVKNE-GKSYRREI 249 (262)
T ss_pred EEEEHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHH-H----HHHHHHHHHHCCEEEEEE-CCCHHHHH
T ss_conf 99832214569878999999999999976999899879999999998-6----379999998677899851-77887999
No 6
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.18 E-value=2.9e-10 Score=85.20 Aligned_cols=104 Identities=20% Similarity=0.250 Sum_probs=78.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE
Q ss_conf 6499888887728999999998578----111468889999999999999971311224665578078999999613879
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVP----IEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRV 142 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~----~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~l 142 (404)
+=|||||++|.|||+||.+.-+.+- ..+-..+.=-+||.++...+. . +.++..-+.+ .++++
T Consensus 146 NPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~tae~F~~~~v~al~---~----------~~~~~Fr~~y-r~~Dv 211 (447)
T PRK00149 146 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVSSEKFTNDFVKALR---N----------NAMEEFKEKY-RSVDV 211 (447)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHH---C----------CCHHHHHHHH-HCCCE
T ss_conf 85589779988788999999999998589972899549999999999985---1----------8699999999-72885
Q ss_pred EEEEEEEECCCHHH--HHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 99842320471358--8899999999854968998178686775
Q gi|254781047|r 143 LCFDEFMITNIADA--IILSRLFAALFSHGCIIVMTSNFIPENL 184 (404)
Q Consensus 143 LCfDEF~V~DiaDA--mil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404)
|.+|..|.--=-++ ..+-..|..|.+.|--+|+||.++|.+|
T Consensus 212 LliDDiqfl~gk~~tqeeff~~fn~l~~~~kqiv~tsd~~P~~l 255 (447)
T PRK00149 212 LLIDDIQFLAGKEKTQEEFFHTFNALHENNKQIVITSDRPPKEL 255 (447)
T ss_pred EEECHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHC
T ss_conf 43214888605577999999999999984996899578896765
No 7
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=99.15 E-value=3.1e-09 Score=78.72 Aligned_cols=142 Identities=13% Similarity=0.135 Sum_probs=97.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 886499888887728999999998578111468---88999999999999997131122466557807899999961387
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCR---LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR 141 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R---~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~ 141 (404)
.+.|+|++|++|+|||+|.-+.-..+- .+..| ++..+||.+++..... +....--.....+++
T Consensus 104 ~~~nl~l~G~~G~GKthLa~Ai~~~l~-~~g~sv~f~~~~el~~~Lk~~~~~-------------~~~~~~l~~~l~~~d 169 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITAPDLLSKLKAAFDE-------------GRLEEKLLRELKKVD 169 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEEEEHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHCC
T ss_conf 588289989999879999999999999-839849998859999999998745-------------526899998875289
Q ss_pred EEEEEEEEE--CCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHC
Q ss_conf 999842320--471358889999999985496899817868677523874056689899999850508980473112211
Q gi|254781047|r 142 VLCFDEFMI--TNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRK 219 (404)
Q Consensus 142 lLCfDEF~V--~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DYR~~ 219 (404)
||-+||+-. .+.--|-++-.++.......-. ++|||.+++++..--=....=..-++-|..++.++.+. |..||+.
T Consensus 170 lLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~-~~tsN~~~~~~~~~~~~~~~~e~~~dRi~~~~~~~~~~-g~s~rl~ 247 (254)
T COG1484 170 LLIIDDIGYEPFSQEEADLLFQLISRRYESRSL-IITSNLSFGEWDELFGDDALTEALLDRILHHSHVIVIK-GESYRLN 247 (254)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEECCCHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEC-CHHHHHH
T ss_conf 899823677668815587999999999973054-20205882788866067511689999998616103761-5167653
Q ss_pred CCC
Q ss_conf 236
Q gi|254781047|r 220 EQS 222 (404)
Q Consensus 220 ~~~ 222 (404)
...
T Consensus 248 ~~~ 250 (254)
T COG1484 248 VRR 250 (254)
T ss_pred CCC
T ss_conf 022
No 8
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.15 E-value=9.5e-10 Score=81.96 Aligned_cols=103 Identities=22% Similarity=0.323 Sum_probs=78.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf 6499888887728999999998578111468889---9999999999999713112246655780789999996138799
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHF---YEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL 143 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HF---h~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL 143 (404)
+-|||||+||.|||+||.+.-+.+..+. .|+-| .+||.++-..|. . +.+...-+.+ .++++|
T Consensus 142 NPLfIyG~~GlGKTHLL~AIgn~i~~~~-~kV~Yvtae~F~~~~v~ai~---~----------~~~~~Fr~~y-r~~DvL 206 (455)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVSALRESG-GKILYVSSELFTEHLVSAIR---S----------GEMQRFRSFY-RNVDAL 206 (455)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHH---C----------CCHHHHHHHH-HCCCEE
T ss_conf 8758878999978999999999853799-86999749999999999997---5----------8899999999-638877
Q ss_pred EEEEEEECC--CHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 984232047--13588899999999854968998178686775
Q gi|254781047|r 144 CFDEFMITN--IADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404)
Q Consensus 144 CfDEF~V~D--iaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404)
.+|..|--- -.--..+=..|.+|.+.|--+|.||.++|.+|
T Consensus 207 LIDDIQfl~gK~~tqeEff~tfN~L~~~~KQIVitsDr~P~el 249 (455)
T PRK12422 207 FIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSSYAPGDL 249 (455)
T ss_pred EEEHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
T ss_conf 6314788728488999999999999985996999689895765
No 9
>PRK06526 transposase; Provisional
Probab=99.05 E-value=1.6e-08 Score=74.14 Aligned_cols=143 Identities=18% Similarity=0.187 Sum_probs=96.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf 88649988888772899999999857811146888999999999999997131122466557807899999961387999
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC 144 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC 144 (404)
..+-|-+.|++|+|||+|.-.+-..+ +..-.++-|-..-. +-++|...+. ...+....+.+ ..++||.
T Consensus 97 ~~~Nvil~G~~GtGKThLA~Alg~~A-~~~G~~v~f~~~~~-L~~~L~~a~~---------~g~~~~~~~~l-~~~dLLI 164 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA-CQAGHRVLFATAAQ-WVARLAAAHH---------AGRLQDELVKL-GRIPLLI 164 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH-HHCCCCEEEEEHHH-HHHHHHHHHH---------CCCHHHHHHHH-HCCCEEE
T ss_conf 58878998999986899999999999-98699679987799-9999999885---------58099999985-1368776
Q ss_pred EEEEEEC--CCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCH-HHHHHHHHHHHHCCEEEECCCCCHHHHCCC
Q ss_conf 8423204--7135888999999998549689981786867752387405-668989999985050898047311221123
Q gi|254781047|r 145 FDEFMIT--NIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINR-NVLVSFIELLEKKLEIISLDSGQDYRRKEQ 221 (404)
Q Consensus 145 fDEF~V~--DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR-~~FlPfI~~lk~~~~V~~l~~~~DYR~~~~ 221 (404)
+|||-.. |-..|-+|=.++..-.+++ -+|+|||.+|++-|.= +.= ..=-.-++-|-.+|.+++++| .-||+++.
T Consensus 165 iDe~g~~~~~~~~a~~lf~li~~Rye~~-S~IiTSn~~~~~W~~~-f~D~~la~AilDRL~H~a~~i~~~G-~SyR~k~r 241 (254)
T PRK06526 165 VDEVGYIPFEAEAANLFFQLVSSRYERA-SLIVTSNKPFGRWGEV-FGDDVVAAAMIDRLVHHAEVISLKG-DSYRLKDR 241 (254)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHHH-CCCHHHHHHHHHHHCCCEEEEEECC-CCCCCCCC
T ss_conf 5021364478899999999999997458-8676658986688886-4868999999998625628998438-86653557
Q ss_pred C
Q ss_conf 6
Q gi|254781047|r 222 S 222 (404)
Q Consensus 222 ~ 222 (404)
.
T Consensus 242 ~ 242 (254)
T PRK06526 242 D 242 (254)
T ss_pred C
T ss_conf 6
No 10
>PRK09183 transposase/IS protein; Provisional
Probab=99.03 E-value=3.8e-09 Score=78.14 Aligned_cols=148 Identities=16% Similarity=0.224 Sum_probs=100.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf 88649988888772899999999857811146888999999999999997131122466557807899999961387999
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC 144 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC 144 (404)
...-|-|.|++|+|||+|--.+-..+- ....++.|-.. .++-.+|...+. ...+....+.....++||-
T Consensus 100 ~~~Nvil~G~~GtGKThLA~Alg~~A~-~~G~~v~f~~~-~~L~~~L~~a~~---------~~~~~~~l~r~l~~~dLLI 168 (258)
T PRK09183 100 RNENIVLLGPSGVGKTHLAIALGYEAV-RAGIKVRFTTA-ADLLLQLSTAQR---------QGRYKTTLQRGVMAPRLLI 168 (258)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEEEEH-HHHHHHHHHHHH---------CCCHHHHHHHHHCCCCEEE
T ss_conf 588679989999868999999999999-87993999789-999999999987---------6859999998743465144
Q ss_pred EEEE--EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHH-HHHHHHHHHHHCCEEEECCCCCHHHHCCC
Q ss_conf 8423--20471358889999999985496899817868677523874056-68989999985050898047311221123
Q gi|254781047|r 145 FDEF--MITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRN-VLVSFIELLEKKLEIISLDSGQDYRRKEQ 221 (404)
Q Consensus 145 fDEF--~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~-~FlPfI~~lk~~~~V~~l~~~~DYR~~~~ 221 (404)
+||| .--+-..|-+|=.++..-.+++ -+|+|||.++++-|.-=.+=. .=-..++-|-.+|.+++++ |.-||++..
T Consensus 169 iDdlG~~~~~~~~~~~lfeli~~Rye~~-S~IiTSn~~~~~W~~~f~~D~~la~AilDRL~H~a~~i~l~-GeSyR~k~~ 246 (258)
T PRK09183 169 IDEIGYLPFSQEEANLFFQVIAKRYEKG-AMILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHVVQIK-GESYRLKQK 246 (258)
T ss_pred EHHHHCCCCCHHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEC-CCCCCHHHH
T ss_conf 3133154688889999999999985767-78998899978985651686999999999860461799745-877237658
Q ss_pred CCCC
Q ss_conf 6783
Q gi|254781047|r 222 SILP 225 (404)
Q Consensus 222 ~~~~ 225 (404)
..++
T Consensus 247 ~k~~ 250 (258)
T PRK09183 247 RKAG 250 (258)
T ss_pred HHCC
T ss_conf 7557
No 11
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.02 E-value=2.5e-09 Score=79.25 Aligned_cols=126 Identities=20% Similarity=0.274 Sum_probs=82.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 86499888887728999999998578----11146888999999999999997131122466557807899999961387
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVP----IEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR 141 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~----~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~ 141 (404)
-.=+|||||||.|||+||.+.-+.+- ..+-.-++=-.||.+.=. ..+. +-++..-+.+ +++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~---a~~~----------~~~~~Fk~~y--~~d 177 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVK---ALRD----------NEMEKFKEKY--SLD 177 (408)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHH---HHHH----------HHHHHHHHHH--CCC
T ss_conf 895799879999789999999999986299864885048998999999---9885----------0488888764--267
Q ss_pred EEEEEEEEEC--CCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCC-H--HHHHHHHHHHHHCCEEEECCCCCHH
Q ss_conf 9998423204--713588899999999854968998178686775238740-5--6689899999850508980473112
Q gi|254781047|r 142 VLCFDEFMIT--NIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEIN-R--NVLVSFIELLEKKLEIISLDSGQDY 216 (404)
Q Consensus 142 lLCfDEF~V~--DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLq-R--~~FlPfI~~lk~~~~V~~l~~~~DY 216 (404)
+||||-.|.- +-..-.-+=.+|..|.+.|-.||.||.++|.+| +++. | .|| +-+.++++..+.|.
T Consensus 178 lllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l--~~~~~rL~SR~--------~~Gl~~~I~~Pd~e 247 (408)
T COG0593 178 LLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKEL--NGLEDRLRSRL--------EWGLVVEIEPPDDE 247 (408)
T ss_pred EEEECHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH--CCCCHHHHHHH--------HCEEEEEECCCCHH
T ss_conf 355513867567715799999999988850887999707883221--10358899898--------63057752798889
No 12
>PRK08181 transposase; Validated
Probab=98.96 E-value=9.3e-09 Score=75.65 Aligned_cols=142 Identities=18% Similarity=0.237 Sum_probs=96.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf 88649988888772899999999857811146888999999999999997131122466557807899999961387999
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC 144 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC 144 (404)
...-|-+.|++|+|||+|--.+-..+- ....++.|-..-. +-+.|...+. ...+....+.+ .+++||.
T Consensus 105 ~~~Nvil~Gp~GtGKThLA~Alg~~A~-~~G~~V~f~~~~~-L~~~L~~a~~---------~~~~~~~~~~l-~~~dLLI 172 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALI-ENGWRVLFTRTTD-LVQKLQVARR---------ELQLESAIAKL-DKFDLLI 172 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEEEEHHH-HHHHHHHHHH---------CCCHHHHHHHH-HCCCEEE
T ss_conf 487089989999878899999999999-8799399978999-9999999775---------58399999997-4446012
Q ss_pred EEEEEECCC--HHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHCC
Q ss_conf 842320471--3588899999999854968998178686775238740566898999998505089804731122112
Q gi|254781047|r 145 FDEFMITNI--ADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKE 220 (404)
Q Consensus 145 fDEF~V~Di--aDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DYR~~~ 220 (404)
+|||--..+ ..|-+|=.++..-.+++ -+|+|||.++++=|.==-..-.=-.-++-|-.+|.+++++| .-||++.
T Consensus 173 iDe~G~~~~~~~~~~~lf~lI~~Rye~~-S~IITSn~~~~~W~~~f~D~~la~AiLDRLvH~a~~i~l~G-eSyR~k~ 248 (269)
T PRK08181 173 LDDLAYVTKDQAETSVLFELISARYERR-SILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNV-ESYRRRT 248 (269)
T ss_pred EHHCCCCCCCHHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCEEEEEECC-CCCCCHH
T ss_conf 2010566799899999999999985788-88998899977887753868899999998701528997558-7612056
No 13
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=98.96 E-value=4.6e-09 Score=77.57 Aligned_cols=104 Identities=23% Similarity=0.300 Sum_probs=68.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCC-HHHH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE
Q ss_conf 649988888772899999999857811-1468---889999999999999971311224665578078999999613879
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIE-KKCR---LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRV 142 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~-~K~R---~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~l 142 (404)
+.+||||+.|+|||+|+......+... ...+ +.-.+|..+.-..+ +. +.+....+ -...+++
T Consensus 35 npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~~~~~~~~~~~l---~~----------~~~~~f~~-~l~~~d~ 100 (219)
T pfam00308 35 NPLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTSEEFLNDFVDAL---RD----------NKIEAFKK-SYRNVDL 100 (219)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHH---HC----------CCHHHHHH-HHHHCCH
T ss_conf 8269988999988899999999999849998288843999999889999---81----------88889999-9763233
Q ss_pred EEEEEEEEC--CCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 998423204--713588899999999854968998178686775
Q gi|254781047|r 143 LCFDEFMIT--NIADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404)
Q Consensus 143 LCfDEF~V~--DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404)
||+|.+|.- +-..--.|-.++..+.+.|..+|+||+.+|.+|
T Consensus 101 l~iDDi~~l~~~~~~ee~lf~l~N~~~~~~~~lllts~~~p~~l 144 (219)
T pfam00308 101 LLIDDIQFLAGKEKTQEEFFHTFNALHENNKQIVLTSDRPPKEL 144 (219)
T ss_pred HHHCCHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 65223676568647899999999999972986999779981002
No 14
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.94 E-value=5.6e-08 Score=70.68 Aligned_cols=136 Identities=15% Similarity=0.180 Sum_probs=90.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE
Q ss_conf 8864998888877289999999985781114--68889999999999999971311224665578078999999613879
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKK--CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRV 142 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K--~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~l 142 (404)
...|++.+|+||+|||+|.-..-+.+-.+.+ .-+..-++|..+.+-- ++.. ..-..+ -....+++|
T Consensus 95 ~~~gLlF~G~~GTGKThLA~aIan~Li~~G~sVlf~t~~dLl~~lr~t~----~~~~-------~~e~~~-l~~l~~~dL 162 (242)
T PRK07952 95 NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTF----RNSE-------TSEEQL-LNDLSNVDL 162 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHH----HCCC-------CCHHHH-HHHHHCCCE
T ss_conf 8871799789999789999999999998799499977999999999998----0687-------569999-998631898
Q ss_pred EEEEEEEECCCHHH--HHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHH--HHHHHH-HHCCEEEECCCCCHHH
Q ss_conf 99842320471358--889999999985496899817868677523874056689--899999-8505089804731122
Q gi|254781047|r 143 LCFDEFMITNIADA--IILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLV--SFIELL-EKKLEIISLDSGQDYR 217 (404)
Q Consensus 143 LCfDEF~V~DiaDA--mil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~Fl--PfI~~l-k~~~~V~~l~~~~DYR 217 (404)
|-+||+=+.-.++. .+|-.++..=....-.+|.|||..+++|-+ ++ -.++-| ..+|.+++++ +..||
T Consensus 163 LIiDdlG~e~~t~~~~~~lf~iId~Ry~~~kp~IitTNl~~~eL~~-------~lGeR~~dRl~~~~~~~l~f~-w~SyR 234 (242)
T PRK07952 163 LVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTK-------LLGERVMDRMRLGNSLWVIFN-WDSYR 234 (242)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH-------HHHHHHHHHHHHCCCEEEEEC-CCCCC
T ss_conf 9873014665888899999999999997169889981799999999-------970899999972798599606-70501
Q ss_pred HCC
Q ss_conf 112
Q gi|254781047|r 218 RKE 220 (404)
Q Consensus 218 ~~~ 220 (404)
.+-
T Consensus 235 ~~i 237 (242)
T PRK07952 235 SRV 237 (242)
T ss_pred CCC
T ss_conf 234
No 15
>PRK05642 DNA replication initiation factor; Validated
Probab=98.94 E-value=4.6e-09 Score=77.57 Aligned_cols=97 Identities=19% Similarity=0.228 Sum_probs=65.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 64998888877289999999985781114688899999999999999713112246655780789999996138799984
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFD 146 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfD 146 (404)
+=+||||++|.|||+||.+....+.... .+..|... .+..+.. .+ .-+-..++.+||+|
T Consensus 46 ~~l~i~G~~G~GKTHLL~A~~~~~~~~~-~~~~yl~~-~~~~~~~-----------------~~--~~~~l~~~d~l~ID 104 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRG-EPAVYLPL-AELLDRG-----------------PE--LLDNLEQYELVCID 104 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEEH-HHHHHHH-----------------HH--HHHHHHHCCEEEEE
T ss_conf 8389988999988999999999998079-96799789-9987544-----------------99--98624227989893
Q ss_pred EEEEC--CCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 23204--713588899999999854968998178686775
Q gi|254781047|r 147 EFMIT--NIADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404)
Q Consensus 147 EF~V~--DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404)
-+|.- +-.---.+=.+|..+.+.|..+|+||+++|.+|
T Consensus 105 Di~~i~g~~~~e~~lF~l~N~~~~~~~~llits~~~P~~l 144 (234)
T PRK05642 105 DLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPREL 144 (234)
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
T ss_conf 6455468859999999999999983995999578795552
No 16
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.92 E-value=5.7e-09 Score=77.01 Aligned_cols=90 Identities=20% Similarity=0.328 Sum_probs=63.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH------HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 49988888772899999999857811146888999------999999999997131122466557807899999961387
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYE------FMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR 141 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~------FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~ 141 (404)
-+||||++|.|||+||.+..+.+.... +++.|-. |+.++- +=.....
T Consensus 47 ~l~l~G~~G~GKTHLLqA~~~~~~~~~-~~~~yl~~~~~~~~~~~~l--------------------------~~l~~~d 99 (235)
T PRK08084 47 YIYLWGREGAGRSHLLHAACAELSQRG-DAVGYVPLDKRAWFVPEVL--------------------------EGMEQLS 99 (235)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCC-CCEEEEEHHHHHHHHHHHH--------------------------HHHHHCC
T ss_conf 699989999888999999999997079-8579987798665179999--------------------------8764189
Q ss_pred EEEEEEEEEC--CCHHHHHHHHHHHHHHHCC-CEEEEECCCCHHHH
Q ss_conf 9998423204--7135888999999998549-68998178686775
Q gi|254781047|r 142 VLCFDEFMIT--NIADAIILSRLFAALFSHG-CIIVMTSNFIPENL 184 (404)
Q Consensus 142 lLCfDEF~V~--DiaDAmil~rl~~~lf~~g-v~lV~TSN~~P~dL 184 (404)
+||+|-+|.- +..--..+=.+|..+.+.| ..||+||+++|.+|
T Consensus 100 ll~iDDi~~i~g~~~~ee~lF~l~N~~~~~g~~~ll~ts~~~P~~l 145 (235)
T PRK08084 100 LVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQL 145 (235)
T ss_pred EEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHC
T ss_conf 8998274554699789999999999999848966999679882430
No 17
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.92 E-value=1.1e-08 Score=75.19 Aligned_cols=94 Identities=18% Similarity=0.224 Sum_probs=65.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf 6499888887728999999998578111468889---9999999999999713112246655780789999996138799
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHF---YEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL 143 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HF---h~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL 143 (404)
+-+||||+.|+|||+|+....+.+.... +++-| .+|+...-.. -+-.+++++|
T Consensus 39 ~~l~i~G~~GsGKTHLl~a~~~~~~~~~-~~~~yl~~~~~~~~~~~~-----------------------l~~l~~~d~l 94 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERG-KSAIYLPLAELAQADPEV-----------------------LEGLEQADLV 94 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCC-CCEEEECHHHHHHHHHHH-----------------------HHHCCCCCEE
T ss_conf 8699989999988999999999986269-957995299987753999-----------------------9727448999
Q ss_pred EEEEEEECC--CHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 984232047--13588899999999854968998178686775
Q gi|254781047|r 144 CFDEFMITN--IADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404)
Q Consensus 144 CfDEF~V~D--iaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404)
|+|.+|.-. -..-..+=.++..+.+.|..+|.||.++|.++
T Consensus 95 ~iDDi~~i~~~~~~e~~lF~l~N~~~~~~~~ilits~~~p~~l 137 (226)
T TIGR03420 95 CLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQL 137 (226)
T ss_pred EEECHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHC
T ss_conf 9966333437837899999999999865282898678882320
No 18
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.87 E-value=3e-08 Score=72.41 Aligned_cols=136 Identities=16% Similarity=0.248 Sum_probs=87.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 688649988888772899999999857811146888---99999999999999713112246655780789999996138
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLH---FYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALES 140 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~H---Fh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~ 140 (404)
....|||+||+||+|||+|....-..+-.+.+ .+- .-++|.. |...+.... . ....+ -+...++
T Consensus 181 ~~~~nLlf~G~~G~GKTfLa~~IA~ell~~g~-sViy~ta~~L~~~----l~~~~~~~~------~-~~~~~-~~~l~~~ 247 (330)
T PRK06835 181 KNNENLLFYGNTGTGKTFLSNCIAKELLDRGK-TVIYRTSDELIEN----LREIRFNND------N-DAPEL-EDLLINC 247 (330)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC-EEEEEEHHHHHHH----HHHHHCCCC------C-CHHHH-HHHHHHC
T ss_conf 88886698899999889999999999998799-4999629999999----999754576------4-48999-9999618
Q ss_pred CEEEEEEEEECCCHHHHHHHH---HHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHH-HHHHHHHHCCEEEECCCCCHH
Q ss_conf 799984232047135888999---9999985496899817868677523874056689-899999850508980473112
Q gi|254781047|r 141 RVLCFDEFMITNIADAIILSR---LFAALFSHGCIIVMTSNFIPENLYKDEINRNVLV-SFIELLEKKLEIISLDSGQDY 216 (404)
Q Consensus 141 ~lLCfDEF~V~DiaDAmil~r---l~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~Fl-PfI~~lk~~~~V~~l~~~~DY 216 (404)
+||-+|++-..-..+ -.... ++..-...+-..|.|||..|++|-. .+- .-..-|-.+|.++++-| .|.
T Consensus 248 DLLIIDDLG~E~~t~-~~~~~Lf~iIN~R~~~~k~tIITTNl~~~eL~~------~y~eRi~SRi~~~~~~~~~~G-~Di 319 (330)
T PRK06835 248 DLLIIDDLGTESITE-FSKTELFNLINKRLLMNKKMIISTNLSLEELLK------TYSERIASRLLGNFTLLKFYG-EDI 319 (330)
T ss_pred CEEEEECCCCCCCCH-HHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH------HHHHHHHHHHHHCCEEEEEEC-CCH
T ss_conf 989972103455886-899999999999986799979988999899999------874899999981854998526-558
Q ss_pred HHCC
Q ss_conf 2112
Q gi|254781047|r 217 RRKE 220 (404)
Q Consensus 217 R~~~ 220 (404)
|...
T Consensus 320 R~~k 323 (330)
T PRK06835 320 RIKK 323 (330)
T ss_pred HHHH
T ss_conf 9999
No 19
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=98.82 E-value=7.8e-08 Score=69.78 Aligned_cols=126 Identities=13% Similarity=0.147 Sum_probs=78.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHH---HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE
Q ss_conf 864998888877289999999985781114688---89999999999999971311224665578078999999613879
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRL---HFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRV 142 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~---HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~l 142 (404)
.+.|.++|++|+|||+|+-.+-..+- .+..++ ...+++.++.. .+. .+.....-+. ..+++|
T Consensus 47 ~~Nlll~G~~GtGKThLA~Ai~~~~~-~~g~~v~f~~~~~L~~~l~~----~~~---------~~~~~~~l~~-~~~~dl 111 (178)
T pfam01695 47 AENLLLLGPPGVGKTHLACALGHQAC-RAGYSVLFTRTPDLVEQLKR----ARG---------DGRLARTLQR-LAKADL 111 (178)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEEEECHHHHHHHHH----HHH---------CCCHHHHHHH-HHCCCE
T ss_conf 87689989999878999999999999-86985999961679999998----752---------6749999999-625897
Q ss_pred EEEEEEEECCCH--HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEE
Q ss_conf 998423204713--58889999999985496899817868677523874056689899999850508
Q gi|254781047|r 143 LCFDEFMITNIA--DAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEI 207 (404)
Q Consensus 143 LCfDEF~V~Dia--DAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V 207 (404)
|.+|||-...+. .+.+|-.++..-.++ -.+|+|||.+|++.+.===.+..=-..++-|-.+|.+
T Consensus 112 LIiDDlG~~~~s~~~~~~lf~li~~Rye~-~stIiTSN~~~~~W~~~~~d~~~a~AilDRlvh~~~~ 177 (178)
T pfam01695 112 LILDDIGYLPLSQEAAHLLFELISDRYER-RSTILTSNLPFGEWHEVFGDPTLATAILDRLLHHAHV 177 (178)
T ss_pred EEEEHHCCCCCCHHHHHHHHHHHHHHHCC-CCEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHCEEE
T ss_conf 88720016568989999999999999756-8868776899789987648768999999987015065
No 20
>PRK08903 hypothetical protein; Validated
Probab=98.81 E-value=1.6e-08 Score=74.24 Aligned_cols=92 Identities=23% Similarity=0.340 Sum_probs=62.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf 49988888772899999999857811146888999999999999997131122466557807899999961387999842
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDE 147 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDE 147 (404)
-+||||+.|.|||+|+....+...... ++..|-.- .. +.. ..+....+++||+|.
T Consensus 44 ~l~i~G~~G~GKTHLl~a~~~~~~~~~-~~~~yl~~---------------------~~-~~~--~~~~~~~~d~l~iDD 98 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVAAASEGG-KNARYLDP---------------------AS-PLL--AFDFDPRAELYAVDD 98 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEECC---------------------CC-CHH--HHHHHHCCCEEEEEC
T ss_conf 699989999988899999999998069-97499651---------------------10-457--774200189899964
Q ss_pred EEECCCHHHHHHHHHHHHHHHCC-CEEEEECCCCHHHH
Q ss_conf 32047135888999999998549-68998178686775
Q gi|254781047|r 148 FMITNIADAIILSRLFAALFSHG-CIIVMTSNFIPENL 184 (404)
Q Consensus 148 F~V~DiaDAmil~rl~~~lf~~g-v~lV~TSN~~P~dL 184 (404)
+|.-+-..-.-+=.++..+...| .+|++||+.+|..|
T Consensus 99 i~~i~~~~q~~lF~l~N~~~~~~~~~ll~s~~~~p~~l 136 (227)
T PRK08903 99 VERLDDAQQIALFNLFNRVRAHGKTALLVAGPAAPLAL 136 (227)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHC
T ss_conf 11489569999999999999729948997189971201
No 21
>PRK12377 putative replication protein; Provisional
Probab=98.78 E-value=5.8e-07 Score=64.24 Aligned_cols=139 Identities=13% Similarity=0.141 Sum_probs=87.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf 88649988888772899999999857811146888999999999999997131122466557807899999961387999
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC 144 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC 144 (404)
...++-+.|++|+|||+|--..-..+-.. -+++-|..- .++-.+|+...... .-...+.+.+ .+++||-
T Consensus 100 ~~~NlIf~G~pGtGKTHLA~AIg~~a~~~-G~sVlF~t~-~dLv~~L~~a~~~g--------~~~~k~l~~l-~~~dLLI 168 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK-GRSVIVVTV-PDVMSRLHESYDNG--------QSGEKFLQEL-CKVDLLV 168 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEEH-HHHHHHHHHHHHCC--------CCHHHHHHHH-HCCCEEE
T ss_conf 88608998999987889999999999987-996999889-99999999999848--------5099999997-3389898
Q ss_pred EEEEEEC--CCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHH-HCCEEEECCCCCHHHHCC
Q ss_conf 8423204--713588899999999854968998178686775238740566898999998-505089804731122112
Q gi|254781047|r 145 FDEFMIT--NIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLE-KKLEIISLDSGQDYRRKE 220 (404)
Q Consensus 145 fDEF~V~--DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk-~~~~V~~l~~~~DYR~~~ 220 (404)
+||+=+. +-..+.+|-.++..=....-.+|+|||-++.++.. +--+ ..++-|. .++.+++++ |..||++-
T Consensus 169 IDElG~~~~s~~~~~llfqlI~~Ry~~~ks~IiTTNL~f~ew~~--ilgd---ailDRL~~h~~~~i~f~-GeSYRk~i 241 (248)
T PRK12377 169 LDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMST--LLGE---RVMDRMTMNGGRWVNFN-WESWRPNV 241 (248)
T ss_pred EHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH--HHHH---HHHHHHHHCCCEEEEEE-CCCCCCCC
T ss_conf 60005788986799999999999985579868975899779988--8759---99999986693499861-73111357
No 22
>PRK08727 hypothetical protein; Validated
Probab=98.72 E-value=1.2e-07 Score=68.59 Aligned_cols=97 Identities=18% Similarity=0.251 Sum_probs=64.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 64998888877289999999985781114688899999999999999713112246655780789999996138799984
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFD 146 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfD 146 (404)
.-+||||+.|.|||+|+........... ++..|-.. ...... ..+.+ +-.....++|+|
T Consensus 42 ~~lyl~G~~GsGKTHLl~a~~~~~~~~~-~~~~yl~l-~~~~~~--------------~~~~l-----~~le~~~ll~iD 100 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALSLCAAAEQAG-RSSAYLPL-QAAAGR--------------LRDAL-----EALEGRSLVALD 100 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEEH-HHHHHH--------------HHHHH-----HHHCCCCEEEEE
T ss_conf 9899989999988999999999998279-97288447-885320--------------25677-----531038978985
Q ss_pred EEEEC--CCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 23204--713588899999999854968998178686775
Q gi|254781047|r 147 EFMIT--NIADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404)
Q Consensus 147 EF~V~--DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404)
-.+.- +-.+--.|=.||..+.+.|..+++||+.+|.++
T Consensus 101 Did~i~g~~~~e~aLFhL~N~~~~~~~~ll~ts~~~P~~l 140 (233)
T PRK08727 101 GVDSIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred CCHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
T ss_conf 5011269827999999999999861983899779895662
No 23
>PRK06921 hypothetical protein; Provisional
Probab=98.72 E-value=2.3e-07 Score=66.83 Aligned_cols=130 Identities=14% Similarity=0.147 Sum_probs=78.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 8864998888877289999999985781114---6888999999999999997131122466557807899999961387
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKK---CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR 141 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K---~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~ 141 (404)
.-.|++++|+||+|||+|....-..+-.... .-+-|-++|.++.+-.. ..... -+..++++
T Consensus 115 ~~~~l~f~G~~G~GKThLa~aIa~~Ll~~~~~~Vly~~~~~~~~~lk~~~~---------------~~~~~-l~~~~~~d 178 (265)
T PRK06921 115 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFD---------------LLEAK-LNRMKKVE 178 (265)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHH---------------HHHHH-HHHHHCCC
T ss_conf 766279972898988999999999999962971999887999999998888---------------89999-99863299
Q ss_pred EEEEEEE-----EECCCHHHH--HHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCE--EEECCC
Q ss_conf 9998423-----204713588--8999999998549689981786867752387405668989999985050--898047
Q gi|254781047|r 142 VLCFDEF-----MITNIADAI--ILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLE--IISLDS 212 (404)
Q Consensus 142 lLCfDEF-----~V~DiaDAm--il~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~--V~~l~~ 212 (404)
||-+|.+ --....+.. .+-.++..=..++..+|.|||..+++|-. +--.. -.-|-+.|. ++.+.|
T Consensus 179 lLIIDDLfk~~~G~e~~te~~~~~lf~iIN~Ry~~~kptIiSSNl~~~~L~~--i~e~i----~SRi~emc~~~~v~~~G 252 (265)
T PRK06921 179 VLFIDDLFKPVNGKPRATEWQIEQTYSVVNYRYLNHKPILISSELTIDELLD--IDEAL----GSRIVEMCKDYLVIING 252 (265)
T ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH--HHHHH----HHHHHHHCCCCEEEEEC
T ss_conf 9998221223479878988999999999999997699989986899899987--63798----88899972574899967
Q ss_pred CCHHH
Q ss_conf 31122
Q gi|254781047|r 213 GQDYR 217 (404)
Q Consensus 213 ~~DYR 217 (404)
.|||
T Consensus 253 -~~~~ 256 (265)
T PRK06921 253 -DSFL 256 (265)
T ss_pred -CHHH
T ss_conf -4113
No 24
>PRK06893 DNA replication initiation factor; Validated
Probab=98.70 E-value=4.3e-08 Score=71.43 Aligned_cols=123 Identities=19% Similarity=0.230 Sum_probs=69.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf 86499888887728999999998578111468889999999999999971311224665578078999999613879998
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCF 145 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCf 145 (404)
.+.+||||+.|+|||+|+....+..-...+ ...|..... ... -+| .+. +=.++..++|+
T Consensus 39 ~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~-~~~yi~~~~-----~~~------------~~~--~~l-~~l~~~d~l~i 97 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQR-TAIYIPLSK-----SQY------------FSP--AVL-ENLEQQDLVCL 97 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCC-CEEEEEHHH-----HHH------------CCH--HHH-HHHHHCCEEEE
T ss_conf 987999899999889999999999997189-859997377-----564------------069--999-87654797999
Q ss_pred EEEEEC--CCHHHHHHHHHHHHHHHCCCE-EEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHH
Q ss_conf 423204--713588899999999854968-99817868677523874056689899999850508980473112
Q gi|254781047|r 146 DEFMIT--NIADAIILSRLFAALFSHGCI-IVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDY 216 (404)
Q Consensus 146 DEF~V~--DiaDAmil~rl~~~lf~~gv~-lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DY 216 (404)
|-+|.- +-.---.+=.+|..+-+.|-. +++||+.+|.+|= .. +|=..-=-..+.++++....|=
T Consensus 98 DDi~~i~g~~~~e~~lF~l~N~l~~~~~~~ll~ss~~~p~~l~---~~----l~DL~SRl~~~~~~~i~~~dd~ 164 (229)
T PRK06893 98 DDLQAVIGNEEWELAIFDLFNRIKESGKTLLLISANQSPHALQ---IK----LPDLASRLTWGEIYQLNDLTDE 164 (229)
T ss_pred ECHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHC---CH----HHHHHHHHHCCEEEEECCCCHH
T ss_conf 6723424883899999999999997599179985798833221---00----2679999968836996677757
No 25
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.69 E-value=1.6e-07 Score=67.88 Aligned_cols=106 Identities=19% Similarity=0.180 Sum_probs=55.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf 68864998888877289999999985781114688899999999999999713112246655780789999996138799
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL 143 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL 143 (404)
.+|+|+-|||++|+|||||..+.-..+...- -++---+++. .+-|... ..-. -+-..|++. .--+|
T Consensus 164 ~pPkGvLLyGPPGtGKTllAkAvA~e~~~~f-i~v~~s~l~s-------k~vGese---k~vr-~lF~~Ar~~--aP~Ii 229 (390)
T PRK03992 164 EPPKGVLLYGPPGTGKTLLAKAVAHETNATF-IRVVGSELVQ-------KFIGEGA---RLVR-ELFELAREK--APSII 229 (390)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEEHHHHHH-------CCCCHHH---HHHH-HHHHHHHHH--CCCEE
T ss_conf 9997278689899978999999998748887-9966799752-------4541799---9999-999999970--99089
Q ss_pred EEEEEEEC--------CCHHHHH---HHHHHHHHH----HCCCEEEEECCCCHHHH
Q ss_conf 98423204--------7135888---999999998----54968998178686775
Q gi|254781047|r 144 CFDEFMIT--------NIADAII---LSRLFAALF----SHGCIIVMTSNFIPENL 184 (404)
Q Consensus 144 CfDEF~V~--------DiaDAmi---l~rl~~~lf----~~gv~lV~TSN~~P~dL 184 (404)
||||+..- .-+|+.+ +..|+..+= ..+|++|+++|++ +.|
T Consensus 230 FiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~emDG~~~~~~V~VIaATNrp-d~L 284 (390)
T PRK03992 230 FIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRP-DIL 284 (390)
T ss_pred EHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC-HHC
T ss_conf 7143256633567788862088999999999974487777882799606981-005
No 26
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.68 E-value=7.6e-08 Score=69.86 Aligned_cols=104 Identities=20% Similarity=0.186 Sum_probs=64.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE
Q ss_conf 66886499888887728999999998578111468889999999999999971311224665578078999999613879
Q gi|254781047|r 63 YCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRV 142 (404)
Q Consensus 63 ~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~l 142 (404)
..+|||+-|+|++||||||+-...-.....+= .|+-.-++|.. +-|.. +..-. -+-.+|+.++- -+
T Consensus 256 l~~PkGvLL~GpPG~GKtl~AKAvA~e~~~p~-l~l~~~~l~~~-------~vGes---E~~~r-~~f~~A~~~aP--~i 321 (491)
T CHL00195 256 LPTPRGLLLVGIQGTGKSLTAKAIANEWNLPL-LRLDVGKLFGG-------IVGES---ESRMR-QMIQLAETISP--CI 321 (491)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEEHHHHHHH-------HCCHH---HHHHH-HHHHHHHHHCC--EE
T ss_conf 99998799979999878999999986638946-99667997560-------06704---99999-99999986198--58
Q ss_pred EEEEEEE-E--------CCCHHHHHHHHHHHHHHHC--CCEEEEECCCC
Q ss_conf 9984232-0--------4713588899999999854--96899817868
Q gi|254781047|r 143 LCFDEFM-I--------TNIADAIILSRLFAALFSH--GCIIVMTSNFI 180 (404)
Q Consensus 143 LCfDEF~-V--------~DiaDAmil~rl~~~lf~~--gv~lV~TSN~~ 180 (404)
|+|||+. . ..=+...+++.++..+-++ +|++|+|.|++
T Consensus 322 lfiDEidk~~~~~~~~~d~g~s~rv~~~~Lt~m~e~~~~VfViattN~~ 370 (491)
T CHL00195 322 LWIDEIDKAFSGLDSKGDSGTSNRVLATFITWLSEKKSPVFVVATANNI 370 (491)
T ss_pred EEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 9974654542588888887232899999999864689976999958997
No 27
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.63 E-value=3.2e-07 Score=65.88 Aligned_cols=108 Identities=15% Similarity=0.056 Sum_probs=64.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE
Q ss_conf 886499888887728999999998578111--468889999999999999971311224665578078999999613879
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEK--KCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRV 142 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~--K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~l 142 (404)
++++++|||++|+|||+|...+.+.+.... -..+..++++............ ..-..-...-..+..+
T Consensus 18 ~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~v 87 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF----------LVRLLFELAEKAKPGV 87 (151)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHHHH----------HHHHHHHHHHHCCCCE
T ss_conf 998089989999886599999999712137982785477704677775760577----------8898999999769986
Q ss_pred EEEEEEEECCCHHHHHHHHHHHHHHH-----CCCEEEEECCCCHH
Q ss_conf 99842320471358889999999985-----49689981786867
Q gi|254781047|r 143 LCFDEFMITNIADAIILSRLFAALFS-----HGCIIVMTSNFIPE 182 (404)
Q Consensus 143 LCfDEF~V~DiaDAmil~rl~~~lf~-----~gv~lV~TSN~~P~ 182 (404)
|.+||.+--....---+.+++..+.. .++.+|+++|+++.
T Consensus 88 l~iDEi~~l~~~~~~~~~~~l~~~~~~~~~~~~~~vI~~tn~~~~ 132 (151)
T cd00009 88 LFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL 132 (151)
T ss_pred EEEECHHHCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCC
T ss_conf 982016655999999999999871575406788899995289988
No 28
>PRK09087 hypothetical protein; Validated
Probab=98.36 E-value=3.5e-06 Score=59.30 Aligned_cols=88 Identities=22% Similarity=0.253 Sum_probs=56.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf 86499888887728999999998578111468889999999999999971311224665578078999999613879998
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCF 145 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCf 145 (404)
.+++||||+.|+|||+|...+.+..... .+|-..+-. ... . ......+|+
T Consensus 44 ~~~~~L~Gp~gsGKTHL~~~~~~~~~a~---~~~~~~~~~-------------------------~~~-~-~~~~~~~~i 93 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKADAL---LVHPNEIGS-------------------------DAA-N-AAAERPVLI 93 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCE---EECHHHCCH-------------------------HHH-H-HHCCCCEEE
T ss_conf 7758998999998869999999980996---836687474-------------------------667-6-532798899
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 423204713588899999999854968998178686775
Q gi|254781047|r 146 DEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404)
Q Consensus 146 DEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404)
|.++...+-+.. |=.++..+-..|..|++||+.+|.++
T Consensus 94 dd~d~~~~dEe~-LFhl~N~~~~~~~~LLlts~~~p~~l 131 (226)
T PRK09087 94 EDIDAGGFDETG-LFHLINSVRQAGTSLLMTSRLWPSAW 131 (226)
T ss_pred ECCCCCCCCHHH-HHHHHHHHHHCCCEEEEECCCCHHHC
T ss_conf 748777747899-99999999853987999889895666
No 29
>PRK06620 hypothetical protein; Validated
Probab=98.36 E-value=3.3e-06 Score=59.45 Aligned_cols=84 Identities=15% Similarity=0.239 Sum_probs=59.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf 86499888887728999999998578111468889999999999999971311224665578078999999613879998
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCF 145 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCf 145 (404)
.+.+||||++|+|||+|...+-+.... .. + +... ...++..++..+|+
T Consensus 44 ~~~l~I~Gp~gSGKTHL~~i~~~~~~a-~~--~----------------------------~~~~-~~~~~~~~~~~~ii 91 (214)
T PRK06620 44 KFTLLIKGPSSSGKTYLTKIWQNLSNA-YI--I----------------------------KDIF-FNEEILEKYNAFII 91 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCC-EE--E----------------------------CHHH-CCHHHHHHCCCEEE
T ss_conf 555999879999889999999998285-88--1----------------------------5121-45878843793798
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 423204713588899999999854968998178686775
Q gi|254781047|r 146 DEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404)
Q Consensus 146 DEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404)
|-++ ...+..++. +|..+-..|..+++||+.+|.++
T Consensus 92 ddid--~~~e~~lfh-lfN~~~~~~~~llits~~~p~~~ 127 (214)
T PRK06620 92 EDIE--NWQEPALLH-IFNIINEKQKYLLLTSSDKSRNF 127 (214)
T ss_pred ECCC--CCCHHHHHH-HHHHHHHCCCEEEEEECCCCCCC
T ss_conf 4677--574679999-99999715987999827985224
No 30
>KOG0733 consensus
Probab=98.27 E-value=1.4e-05 Score=55.44 Aligned_cols=140 Identities=18% Similarity=0.231 Sum_probs=81.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC-E
Q ss_conf 688649988888772899999999857811146888999999999999997131122466557807899999961387-9
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR-V 142 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~-l 142 (404)
.||||+.|||++|||||||-+++-..+.++=- .+-=- ++ ..|-. ++ .+.-|..+=++-.+.+. |
T Consensus 221 ~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~-~isAp--------ei--vSGvS--GE--SEkkiRelF~~A~~~aPci 285 (802)
T KOG0733 221 RPPRGVLLHGPPGCGKTSLANAIAGELGVPFL-SISAP--------EI--VSGVS--GE--SEKKIRELFDQAKSNAPCI 285 (802)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCCCEE-EECCH--------HH--HCCCC--CC--CHHHHHHHHHHHHCCCCEE
T ss_conf 79975164489986478999997521288548-51414--------65--31557--52--2899999999873669759
Q ss_pred EEEEEEEECCCH--------HHHHHHHHHHHHH--------HCCCEEEEECCCCHHHHHCCCCCH-HHHHHHH-------
Q ss_conf 998423204713--------5888999999998--------549689981786867752387405-6689899-------
Q gi|254781047|r 143 LCFDEFMITNIA--------DAIILSRLFAALF--------SHGCIIVMTSNFIPENLYKDEINR-NVLVSFI------- 198 (404)
Q Consensus 143 LCfDEF~V~Dia--------DAmil~rl~~~lf--------~~gv~lV~TSN~~P~dLY~~GLqR-~~FlPfI------- 198 (404)
++|||..---.. .--|++.|+..+= ..+|++|.+-||| |-| ..+|-| -+|---|
T Consensus 286 vFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP-Dsl-DpaLRRaGRFdrEI~l~vP~e 363 (802)
T KOG0733 286 VFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP-DSL-DPALRRAGRFDREICLGVPSE 363 (802)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCC-CCC-CHHHHCCCCCCCEEEECCCCH
T ss_conf 985110013644045788999999999998510025666689976998247897-655-877732565532353068966
Q ss_pred ----HHHHHCCEEEECCCCCHHHHCC
Q ss_conf ----9998505089804731122112
Q gi|254781047|r 199 ----ELLEKKLEIISLDSGQDYRRKE 220 (404)
Q Consensus 199 ----~~lk~~~~V~~l~~~~DYR~~~ 220 (404)
++|+.-|.-+.+++..||++..
T Consensus 364 ~aR~~IL~~~~~~lrl~g~~d~~qlA 389 (802)
T KOG0733 364 TAREEILRIICRGLRLSGDFDFKQLA 389 (802)
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 88999999998627778776899997
No 31
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=98.19 E-value=2.6e-06 Score=60.10 Aligned_cols=91 Identities=21% Similarity=0.191 Sum_probs=50.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf 49988888772899999999857811146888999999999999997131122466557807899999961387999842
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDE 147 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDE 147 (404)
||.|+|++|+|||.|...+.+.+....-.++..|..|..- .+.-...-........+-|+... .++..+|+|||
T Consensus 1 ~vll~Gp~G~GKT~la~~la~~l~~~~~~~i~~~~~~~~~--dl~G~~~~~~~~~~~~~g~l~~a----~~~g~vl~lDE 74 (139)
T pfam07728 1 GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTEE--DLKGRRNIANGTTSWVDGPLVRA----AREGEIAVLDE 74 (139)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCHH--HCCCCEECCCCCEEEECCHHHCC----CCCCCEEEECC
T ss_conf 9899989975699999999998079831112146556522--20573423799357815514101----01286899634
Q ss_pred EEECCCHHHHHHHHHHHHHH
Q ss_conf 32047135888999999998
Q gi|254781047|r 148 FMITNIADAIILSRLFAALF 167 (404)
Q Consensus 148 F~V~DiaDAmil~rl~~~lf 167 (404)
+.--+ .=++..|+..|-
T Consensus 75 in~a~---~~v~~~L~~~le 91 (139)
T pfam07728 75 INRAN---PDVLNSLLSLLD 91 (139)
T ss_pred HHHCC---HHHHHHHHHHHC
T ss_conf 34489---999999999974
No 32
>CHL00176 ftsH cell division protein; Validated
Probab=98.14 E-value=6.2e-05 Score=51.39 Aligned_cols=141 Identities=18% Similarity=0.224 Sum_probs=77.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf 68864998888877289999999985781114688899999999999999713112246655780789999996138799
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL 143 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL 143 (404)
..|||+-|+|++|+|||+|-.+.-.-+.++= -.+-=-+|+. |..--+ .....| |-.-|++.+ --++
T Consensus 208 k~PkGvLL~GpPGTGKTlLAkAvAgEa~vpF-~~~sgs~F~e-----~~vGvg-----a~rVR~-LF~~Ar~~a--P~Ii 273 (631)
T CHL00176 208 KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF-FSISGSEFVE-----MFVGVG-----AARVRD-LFKKAKENS--PCIV 273 (631)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCE-EEEEHHHHHH-----HHCCHH-----HHHHHH-HHHHHHHCC--CEEE
T ss_conf 6896589889899878899999856558846-9988378556-----421555-----899999-999998639--9699
Q ss_pred EEEEEEECC------CH-----HHHHHHHHHHHHH----HCCCEEEEECCCC----HHHHHCCCCCHHHHH--HH----H
Q ss_conf 984232047------13-----5888999999998----5496899817868----677523874056689--89----9
Q gi|254781047|r 144 CFDEFMITN------IA-----DAIILSRLFAALF----SHGCIIVMTSNFI----PENLYKDEINRNVLV--SF----I 198 (404)
Q Consensus 144 CfDEF~V~D------ia-----DAmil~rl~~~lf----~~gv~lV~TSN~~----P~dLY~~GLqR~~Fl--Pf----I 198 (404)
+|||+-.-- .+ -...|..||..+= +.||++|+..|+| |.-|=++-+-|.-.+ |- .
T Consensus 274 FIDEiDaig~~Rg~~~~gg~~e~e~tlnqLL~emDGf~~~~gViViaATNrpd~LDpALlRPGRFDR~I~V~lPD~~gR~ 353 (631)
T CHL00176 274 FIDEIDAVGRQRGAGVGGGNDEREQTLNQLLTEMDGFEGNKGVIVIAATNRIDILDAALLRPGRFDRQVTVSLPDFEGRL 353 (631)
T ss_pred EEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCEEEEECCCCHHHHH
T ss_conf 98710120114789888985089999999999842888788869998258855456866268877549982698989999
Q ss_pred HHHHHCCEEEECCCCCHHHH
Q ss_conf 99985050898047311221
Q gi|254781047|r 199 ELLEKKLEIISLDSGQDYRR 218 (404)
Q Consensus 199 ~~lk~~~~V~~l~~~~DYR~ 218 (404)
++|+-|+.-..++.+.|+..
T Consensus 354 ~IL~vh~k~~~l~~dvdl~~ 373 (631)
T CHL00176 354 DILKVHARNKKLAEDVSLEL 373 (631)
T ss_pred HHHHHHHHCCCCCCCHHHHH
T ss_conf 99999970786665300999
No 33
>KOG0727 consensus
Probab=98.07 E-value=4.8e-05 Score=52.11 Aligned_cols=112 Identities=21% Similarity=0.265 Sum_probs=62.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC--CC
Q ss_conf 6886499888887728999999998578111468889999999999999971311224665578078999999613--87
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALE--SR 141 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~--~~ 141 (404)
-||+|+.+||++|||||||...--++.... =-|+-=.+|. |.-|-+ .+-...- +=.++++ -.
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a~-firvvgsefv---qkylge-----------gprmvrd-vfrlakenaps 250 (408)
T KOG0727 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAA-FIRVVGSEFV---QKYLGE-----------GPRMVRD-VFRLAKENAPS 250 (408)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCHH-EEEECCHHHH---HHHHCC-----------CCHHHHH-HHHHHHCCCCC
T ss_conf 998622775799975789999986126111-4463018999---998554-----------8389999-99987616983
Q ss_pred EEEEEEEEE--------CCCHHHHHHHHHHHHHHH--------CCCEEEEECCCC----HHHHHCCCCCHH
Q ss_conf 999842320--------471358889999999985--------496899817868----677523874056
Q gi|254781047|r 142 VLCFDEFMI--------TNIADAIILSRLFAALFS--------HGCIIVMTSNFI----PENLYKDEINRN 192 (404)
Q Consensus 142 lLCfDEF~V--------~DiaDAmil~rl~~~lf~--------~gv~lV~TSN~~----P~dLY~~GLqR~ 192 (404)
++++||..- .-=||-- ..|++-.|.+ -+|.+|+..||+ |.-|-++.|-|.
T Consensus 251 iifideidaiatkrfdaqtgadre-vqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrk 320 (408)
T KOG0727 251 IIFIDEIDAIATKRFDAQTGADRE-VQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRK 320 (408)
T ss_pred EEEEEHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCC
T ss_conf 798622456766412444463189-9999999997514767666558998327555668766287643444
No 34
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.00016 Score=48.76 Aligned_cols=140 Identities=19% Similarity=0.193 Sum_probs=82.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC--CC
Q ss_conf 6886499888887728999999998578111468889999999999999971311224665578078999999613--87
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALE--SR 141 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~--~~ 141 (404)
.||||+.|||++|+|||||-.+.-+.....= -|+-=-+| || ++-|.. . -+-.=.=++|++ --
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-IrvvgSEl---Vq----KYiGEG---a-----RlVRelF~lArekaPs 246 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQTDATF-IRVVGSEL---VQ----KYIGEG---A-----RLVRELFELAREKAPS 246 (406)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCEE-EEECCHHH---HH----HHHCCC---H-----HHHHHHHHHHHHCCCE
T ss_conf 9997127668999758899999872058669-99421999---99----983411---6-----9999999987414984
Q ss_pred EEEEEEEEE--------CCCHHHHHHHHHHHHHHH-------CCCEEEEECCCC----HHHHHCCCCCHHH------HHH
Q ss_conf 999842320--------471358889999999985-------496899817868----6775238740566------898
Q gi|254781047|r 142 VLCFDEFMI--------TNIADAIILSRLFAALFS-------HGCIIVMTSNFI----PENLYKDEINRNV------LVS 196 (404)
Q Consensus 142 lLCfDEF~V--------~DiaDAmil~rl~~~lf~-------~gv~lV~TSN~~----P~dLY~~GLqR~~------FlP 196 (404)
+|||||.-- .-=+|.=+=.-+++-|-+ .+|.+|+-.||+ |.-|=++-+-|-- +..
T Consensus 247 IIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~g 326 (406)
T COG1222 247 IIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEG 326 (406)
T ss_pred EEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEECCCCCHHH
T ss_conf 99983112231111368888509999999999986058897887689985588555576650887545301168989789
Q ss_pred HHHHHHHCCEEEECCCCCHHHHC
Q ss_conf 99999850508980473112211
Q gi|254781047|r 197 FIELLEKKLEIISLDSGQDYRRK 219 (404)
Q Consensus 197 fI~~lk~~~~V~~l~~~~DYR~~ 219 (404)
=.++++-|+.-.+++.+.||...
T Consensus 327 R~~Il~IHtrkM~l~~dvd~e~l 349 (406)
T COG1222 327 RAEILKIHTRKMNLADDVDLELL 349 (406)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 99999987621467667699999
No 35
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=97.96 E-value=1e-05 Score=56.35 Aligned_cols=101 Identities=17% Similarity=0.207 Sum_probs=49.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEEEE
Q ss_conf 99888887728999999998578111468889999999999999971311224665578078999999613-87999842
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALE-SRVLCFDE 147 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~-~~lLCfDE 147 (404)
+.|||++|+|||++-....+.+. .|| |.....+....+.+. ...-+..+-+..... --+|++||
T Consensus 1 iLl~GppGtGKT~~a~~la~~~~------~~~--~~v~~~~~~~~~~g~-------~~~~i~~~f~~a~~~~p~Il~iDe 65 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELG------APF--IEISGSELVSKYVGE-------SEKRLRELFEAAKKLAPCVIFIDE 65 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHHC------CCC--EECCCCCCCCCCCCH-------HHHHHHHHHHHHHHCCCCEEEECH
T ss_conf 98789999999999999999978------985--332420122233450-------688899999999974991898311
Q ss_pred EEEC--C------CHHHHHHHHHHHHH---H--HCCCEEEEECCCCHHHHH
Q ss_conf 3204--7------13588899999999---8--549689981786867752
Q gi|254781047|r 148 FMIT--N------IADAIILSRLFAAL---F--SHGCIIVMTSNFIPENLY 185 (404)
Q Consensus 148 F~V~--D------iaDAmil~rl~~~l---f--~~gv~lV~TSN~~P~dLY 185 (404)
++-- + -....++..|+..+ . ..++++|+|+|+ |+.|-
T Consensus 66 ~d~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~~I~tTN~-~~~ld 115 (131)
T pfam00004 66 IDALAGSRGSGGDSESRRVVNQLLTELDGFTSSLSKVIVIAATNR-PDKLD 115 (131)
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCC-HHHCC
T ss_conf 677751678888875132687899998502246887699997599-04499
No 36
>PRK04195 replication factor C large subunit; Provisional
Probab=97.89 E-value=0.00013 Score=49.36 Aligned_cols=115 Identities=18% Similarity=0.152 Sum_probs=66.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH-------C
Q ss_conf 864998888877289999999985781114688899999999999999713112246655780789999996-------1
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIA-------L 138 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~-------~ 138 (404)
.+.+-|+|++|+|||-+.-++-..+... .. +++.- .....+-|..++...+ .
T Consensus 40 ~k~lLL~GPpGvGKTT~a~~lAk~~g~~------vi--------ElNAS-------D~R~~~~I~~~i~~~~~~~sl~~~ 98 (403)
T PRK04195 40 KKALLLYGPPGVGKTSLAHALANDYGWE------VI--------ELNAS-------DQRTKDVIERVAGEASTSGSLFGA 98 (403)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCC------EE--------EECCC-------CCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 7469988939987999999999984998------59--------97710-------114789999999987606887788
Q ss_pred CCCEEEEEEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCC
Q ss_conf 387999842320-4713588899999999854968998178686775238740566898999998505089804731
Q gi|254781047|r 139 ESRVLCFDEFMI-TNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQ 214 (404)
Q Consensus 139 ~~~lLCfDEF~V-~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~ 214 (404)
..+|+.+||..- +--+|.--+..|.+.+-+-...+|++.|-+ |.. .+..|+.+|.++.+....
T Consensus 99 ~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~s~~PiIli~Nd~----~~~---------~~~~lrs~c~~i~F~~~~ 162 (403)
T PRK04195 99 KRKLILLDEVDGIHGNADRGGVRAILEIIKKAKNPIILTANDP----YDP---------SLRPLRNACLMIEFKRLS 162 (403)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCC---------CHHHHHHHHHHCCCCCCC
T ss_conf 7349996343445724447999999999854887089982684----556---------717799766122179949
No 37
>KOG0730 consensus
Probab=97.88 E-value=7.3e-05 Score=50.93 Aligned_cols=139 Identities=18% Similarity=0.238 Sum_probs=76.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC-C
Q ss_conf 666886499888887728999999998578111468889999999999999971311224665578078999999613-8
Q gi|254781047|r 62 KYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALE-S 140 (404)
Q Consensus 62 ~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~-~ 140 (404)
...+|+|+-+||++|+|||||++.+-+-.. .|+ |-...++-+..+-+. ..+++-..++.....+ -
T Consensus 214 g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~------a~~--~~i~~peli~k~~gE------te~~LR~~f~~a~k~~~p 279 (693)
T KOG0730 214 GIKPPRGLLLYGPPGTGKTFLVRAVANEYG------AFL--FLINGPELISKFPGE------TESNLRKAFAEALKFQVP 279 (693)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHC------CEE--EECCCHHHHHHCCCC------HHHHHHHHHHHHHCCCCC
T ss_conf 899998744438999981899999999737------225--740628999852463------177899999998665998
Q ss_pred CEEEEEEEEECC-------CHHHHHHHHHHHHHHHC----CCEEEEECCCCHHHHHCCCCCHHHH-----H--HH----H
Q ss_conf 799984232047-------13588899999999854----9689981786867752387405668-----9--89----9
Q gi|254781047|r 141 RVLCFDEFMITN-------IADAIILSRLFAALFSH----GCIIVMTSNFIPENLYKDEINRNVL-----V--SF----I 198 (404)
Q Consensus 141 ~lLCfDEF~V~D-------iaDAmil~rl~~~lf~~----gv~lV~TSN~~P~dLY~~GLqR~~F-----l--Pf----I 198 (404)
-+|++||....= ..+--+.+.|+..+... ++++++|+|+|- -| .-++.|-+| + |- .
T Consensus 280 sii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~-sl-d~alRRgRfd~ev~IgiP~~~~Rl 357 (693)
T KOG0730 280 SIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPD-SL-DPALRRGRFDREVEIGIPGSDGRL 357 (693)
T ss_pred EEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC-CC-CHHHHCCCCCCEEEECCCCCHHHH
T ss_conf 0775876762377643332488899999999985276767469997158855-56-856524788531574489833588
Q ss_pred HHHHHCCEEEECCCCCHH
Q ss_conf 999850508980473112
Q gi|254781047|r 199 ELLEKKLEIISLDSGQDY 216 (404)
Q Consensus 199 ~~lk~~~~V~~l~~~~DY 216 (404)
++++-.+..+++.+..|.
T Consensus 358 dIl~~l~k~~~~~~~~~l 375 (693)
T KOG0730 358 DILRVLTKKMNLLSDVDL 375 (693)
T ss_pred HHHHHHHHHCCCCCHHHH
T ss_conf 999999861688725568
No 38
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.87 E-value=0.00013 Score=49.30 Aligned_cols=141 Identities=17% Similarity=0.257 Sum_probs=76.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf 68864998888877289999999985781114688899999999999999713112246655780789999996138799
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL 143 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL 143 (404)
..|||+.|+|++|+|||+|-.+.-.-+..+=- .+-=-+|+. + +-| .+.....| |-.-|++. .--++
T Consensus 183 k~PkGvLL~GPPGtGKTlLAkAvAgEa~vpF~-~~sgsef~e-----~--~vG---vga~rVR~-lF~~Ar~~--aP~II 248 (644)
T PRK10733 183 KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFF-TISGSDFVE-----M--FVG---VGASRVRD-MFEQAKKA--APCII 248 (644)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHCCCCCEEE-EEEHHHHHH-----E--EEE---CCHHHHHH-HHHHHHHC--CCEEE
T ss_conf 79985177798998778999998645598089-978477302-----2--253---06899999-99999966--99799
Q ss_pred EEEEEEECC------CH-----HHHHHHHHHHHHH----HCCCEEEEECCCC----HHHHHCCCCCHHHHH--H----HH
Q ss_conf 984232047------13-----5888999999998----5496899817868----677523874056689--8----99
Q gi|254781047|r 144 CFDEFMITN------IA-----DAIILSRLFAALF----SHGCIIVMTSNFI----PENLYKDEINRNVLV--S----FI 198 (404)
Q Consensus 144 CfDEF~V~D------ia-----DAmil~rl~~~lf----~~gv~lV~TSN~~----P~dLY~~GLqR~~Fl--P----fI 198 (404)
+|||+-.-- .+ -...|..|+..+= +.||++++..|++ |.-|=++-+-|.-.+ | =.
T Consensus 249 FIDEiDaig~~R~~~~~gg~~e~~~tlNqlL~EmDGf~~~~~ViviaATNrpd~LD~ALlRPGRFDr~I~V~lPd~~~R~ 328 (644)
T PRK10733 249 FIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGRE 328 (644)
T ss_pred EEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCHHHHH
T ss_conf 99532203666789888983288878999999954888878769996269975547777168886559997798988999
Q ss_pred HHHHHCCEEEECCCCCHHHH
Q ss_conf 99985050898047311221
Q gi|254781047|r 199 ELLEKKLEIISLDSGQDYRR 218 (404)
Q Consensus 199 ~~lk~~~~V~~l~~~~DYR~ 218 (404)
++|+-+..-..++...|+..
T Consensus 329 ~ILkvh~~~~~l~~dvdl~~ 348 (644)
T PRK10733 329 QILKVHMRRVPLAPDIDAAI 348 (644)
T ss_pred HHHHHHHCCCCCCCCCCHHH
T ss_conf 99999964887773115898
No 39
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=3.6e-05 Score=52.91 Aligned_cols=106 Identities=16% Similarity=0.230 Sum_probs=59.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE
Q ss_conf 66886499888887728999999998578111468889999999999999971311224665578078999999613879
Q gi|254781047|r 63 YCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRV 142 (404)
Q Consensus 63 ~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~l 142 (404)
..+|+|+-|||++|+|||||-......+. .+|..+-.- +-+..+-+.. .++--..........--+
T Consensus 273 ~~~~~giLl~GpPGtGKT~lAkava~~~~------~~fi~v~~~--~l~sk~vGes------ek~ir~~F~~A~~~~p~i 338 (494)
T COG0464 273 LRPPKGVLLYGPPGTGKTLLAKAVALESR------SRFISVKGS--ELLSKWVGES------EKNIRELFEKARKLAPSI 338 (494)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCC------CCEEEECCH--HHHHHHHHHH------HHHHHHHHHHHHHCCCCE
T ss_conf 98883699988999758999999875449------824884335--5540776599------999999999999669988
Q ss_pred EEEEEEEE-----C-CCH--HHHHHHHHHHHHH----HCCCEEEEECCCCHH
Q ss_conf 99842320-----4-713--5888999999998----549689981786867
Q gi|254781047|r 143 LCFDEFMI-----T-NIA--DAIILSRLFAALF----SHGCIIVMTSNFIPE 182 (404)
Q Consensus 143 LCfDEF~V-----~-Dia--DAmil~rl~~~lf----~~gv~lV~TSN~~P~ 182 (404)
|+|||+.- . +.. ...+++.|+..+- ..+|++|+++|++-.
T Consensus 339 ifiDEiDs~~~~r~~~~~~~~~rv~~~ll~~~d~~e~~~~v~vi~aTN~p~~ 390 (494)
T COG0464 339 IFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDD 390 (494)
T ss_pred EEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
T ss_conf 9748866674128998763799999999999747544376489964798332
No 40
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.79 E-value=0.00013 Score=49.32 Aligned_cols=113 Identities=12% Similarity=0.134 Sum_probs=61.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCH-HHH-H--------HHHHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHH
Q ss_conf 886499888887728999999998578111-468-8--------899999999999999713112-24665578078999
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEK-KCR-L--------HFYEFMKDVHSRIIMYRKKIE-FGEILESDPIPLVA 133 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~-K~R-~--------HFh~FM~~ih~~l~~~~~~~~-~~~~~~~dpl~~va 133 (404)
.|..+||||++|+|||..+..+.+.+.... +-+ + .-+.-..+|...| .+... ..+.....-+..+.
T Consensus 54 ~~~n~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc~~~~t~~~i~~~i~~~L---~~~~~p~~G~s~~~~~~~l~ 130 (394)
T PRK00411 54 RPSNVLILGPPGTGKTTTVKKVFEELEEAALKVVYVYINCQIDRTRYAILSEIARSL---FGHPPPSSGLSFDELFDKIA 130 (394)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH---CCCCCCCCCCCHHHHHHHHH
T ss_conf 998479988999989999999999999746896599996966898999999999995---69989877878999999999
Q ss_pred HHHHCCC--CEEEEEEEEE-CCCHHHHHHHHHHHH---HHHCCCEEEEECCCC
Q ss_conf 9996138--7999842320-471358889999999---985496899817868
Q gi|254781047|r 134 SSIALES--RVLCFDEFMI-TNIADAIILSRLFAA---LFSHGCIIVMTSNFI 180 (404)
Q Consensus 134 ~~l~~~~--~lLCfDEF~V-~DiaDAmil~rl~~~---lf~~gv~lV~TSN~~ 180 (404)
+.+.+.. -|+++||+.- ..-.+.=+|-.||.. +-.-++.+|+=||..
T Consensus 131 ~~l~~~~~~~ivvLDEiD~L~~~~~~~vLY~L~r~~~~~~~~~~~vI~IsN~~ 183 (394)
T PRK00411 131 EYLDERDRVLIVALDDINYLVEKEGNDVLYSLLRAHEEYPGARIGVIGISSDL 183 (394)
T ss_pred HHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEEECCC
T ss_conf 98616697589999655402036650899999854022688738999997687
No 41
>KOG0730 consensus
Probab=97.73 E-value=0.00011 Score=49.74 Aligned_cols=99 Identities=20% Similarity=0.274 Sum_probs=53.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH---HHHH
Q ss_conf 6688649988888772899999999857811---146888999999999999997131122466557807899---9999
Q gi|254781047|r 63 YCSMQGIYLHGDVGQGKSMLMNLFFALVPIE---KKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLV---ASSI 136 (404)
Q Consensus 63 ~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~---~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~v---a~~l 136 (404)
..+||||.+||++|||||++-..+-+.+... -|-- ++ +..|-|.. +.-|-.+ |++.
T Consensus 465 i~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgp--------EL---~sk~vGeS-------Er~ir~iF~kAR~~ 526 (693)
T KOG0730 465 ISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGP--------EL---FSKYVGES-------ERAIREVFRKARQV 526 (693)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCH--------HH---HHHHCCCH-------HHHHHHHHHHHHHC
T ss_conf 78875477778998624789999864635872641578--------99---87751825-------89999999998626
Q ss_pred HCCCCEEEEEEEEECCCH--------HHHHHHHHHHHH----HHCCCEEEEECCCCH
Q ss_conf 613879998423204713--------588899999999----854968998178686
Q gi|254781047|r 137 ALESRVLCFDEFMITNIA--------DAIILSRLFAAL----FSHGCIIVMTSNFIP 181 (404)
Q Consensus 137 ~~~~~lLCfDEF~V~Dia--------DAmil~rl~~~l----f~~gv~lV~TSN~~P 181 (404)
+- -+|+|||....-.+ .--+|..|+..+ -.++|++|+--|||-
T Consensus 527 aP--~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd 581 (693)
T KOG0730 527 AP--CIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPD 581 (693)
T ss_pred CC--EEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHH
T ss_conf 98--37744666666630478755148999999998700410147089995058810
No 42
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=97.71 E-value=1e-05 Score=56.38 Aligned_cols=92 Identities=22% Similarity=0.210 Sum_probs=52.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC----C-CCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf 99888887728999999998578111468889999999999999971311----2-246655780789999996138799
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKI----E-FGEILESDPIPLVASSIALESRVL 143 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~----~-~~~~~~~dpl~~va~~l~~~~~lL 143 (404)
|+|||++|+|||.|.-.+-+.+..+ -.|+.++.-|.. .. +.+.. . ..-...+-|+. ..++
T Consensus 2 VLL~GppG~GKT~l~~~lA~~~~~~-~~~i~~~~~~~~--~D---l~G~~~~~~~~~~~~~~~G~l~---------~~vl 66 (131)
T pfam07726 2 VLLEGVPGLAKTLLARTLARSLGLD-FRRIQFTPDLLP--SD---ITGTEVYDQKTREFEFRPGPIF---------ANVL 66 (131)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCC-CEEEEECCCCCC--CC---CCCCEEECCCCCEEEEECCCCC---------CCCE
T ss_conf 8789899876999999999995998-168883377670--00---3684542378740898457310---------3705
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHCC-------------CEEEEECC
Q ss_conf 984232047135888999999998549-------------68998178
Q gi|254781047|r 144 CFDEFMITNIADAIILSRLFAALFSHG-------------CIIVMTSN 178 (404)
Q Consensus 144 CfDEF~V~DiaDAmil~rl~~~lf~~g-------------v~lV~TSN 178 (404)
++||+-- |..-++..|++.+-++- ..+|||+|
T Consensus 67 ~lDEin~---a~~~v~~~Ll~~l~er~v~~~g~~~~~p~~f~viAt~N 111 (131)
T pfam07726 67 LADEINR---APPKTQSALLEAMQERQVTIGGETHPLPEPFFVLATQN 111 (131)
T ss_pred EEEHHHC---CCHHHHHHHHHHHHCEEEEECCEEEECCCCEEEEECCC
T ss_conf 6401203---99899999997632649977998852799849997169
No 43
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.67 E-value=0.0019 Score=42.00 Aligned_cols=126 Identities=16% Similarity=0.315 Sum_probs=67.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC-----CCC-HHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 649988888772899999999857-----811-14688899999999999999--7131122466557807899999961
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALV-----PIE-KKCRLHFYEFMKDVHSRIIM--YRKKIEFGEILESDPIPLVASSIAL 138 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l-----~~~-~K~R~HFh~FM~~ih~~l~~--~~~~~~~~~~~~~dpl~~va~~l~~ 138 (404)
+-.-|-|++|+|||-+..-+-..+ |.. +.+|+ |.+++-.-+.- +||. -+.-+..|.+++.+
T Consensus 208 NNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i----~~Ldl~~LiAGtkyRGe-------fEeRlk~vi~e~~~ 276 (758)
T PRK11034 208 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTI----YSLDIGSLLAGTKYRGD-------FEKRFKALLKQLEQ 276 (758)
T ss_pred CCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEE----EEEEHHHHHCCCCCCHH-------HHHHHHHHHHHHHH
T ss_conf 89602169998699999999999973899765589889----98458778616864154-------99999999999985
Q ss_pred CC-CEEEEEEEEEC-CC----HHHHHHHHHHHHHHHCC-CEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf 38-79998423204-71----35888999999998549-68998178686775238740566898999998505089804
Q gi|254781047|r 139 ES-RVLCFDEFMIT-NI----ADAIILSRLFAALFSHG-CIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD 211 (404)
Q Consensus 139 ~~-~lLCfDEF~V~-Di----aDAmil~rl~~~lf~~g-v~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~ 211 (404)
.. -+||+||.|.- .- +..|=.+.+++-...+| +.+|.+. +. ++ |+.=+.+|. .|.++|+.+.++
T Consensus 277 ~~~~ILFIDEiH~ivGaG~~~gg~~DaaNlLKP~LarG~l~~IgaT-T~-~E-Yrk~iekD~------AL~RRFq~V~V~ 347 (758)
T PRK11034 277 DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGST-TY-QE-FSNIFEKDR------ALARRFQKIDIT 347 (758)
T ss_pred CCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC-CH-HH-HHHCCCCCH------HHHHCCCEEECC
T ss_conf 7985999804344226887677764678874578746972399943-77-99-875032147------888428265318
Q ss_pred C
Q ss_conf 7
Q gi|254781047|r 212 S 212 (404)
Q Consensus 212 ~ 212 (404)
.
T Consensus 348 E 348 (758)
T PRK11034 348 E 348 (758)
T ss_pred C
T ss_conf 9
No 44
>KOG0735 consensus
Probab=97.67 E-value=0.00068 Score=44.77 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=18.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 886499888887728999999998578
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
.+.|+.|||++|||||+|....-.+.+
T Consensus 700 ~~~giLLyGppGcGKT~la~a~a~~~~ 726 (952)
T KOG0735 700 LRTGILLYGPPGCGKTLLASAIASNSN 726 (952)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 655458877999857888888885378
No 45
>KOG0733 consensus
Probab=97.63 E-value=4.4e-05 Score=52.34 Aligned_cols=139 Identities=19% Similarity=0.252 Sum_probs=76.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH-HHHHCCCCE
Q ss_conf 6886499888887728999999998578111468889999999999999971311224665578078999-999613879
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVA-SSIALESRV 142 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va-~~l~~~~~l 142 (404)
..|.|+.|||++|||||+|-.+--+-.. ..|..- .=-..|+.+-|.. +-.+..|= +.=+..--|
T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVANEag------~NFisV--KGPELlNkYVGES-------ErAVR~vFqRAR~saPCV 607 (802)
T KOG0733 543 DAPSGVLLCGPPGCGKTLLAKAVANEAG------ANFISV--KGPELLNKYVGES-------ERAVRQVFQRARASAPCV 607 (802)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCC------CCEEEE--CCHHHHHHHHHHH-------HHHHHHHHHHHHCCCCEE
T ss_conf 8987238757998618899999850304------754762--3889998774237-------899999999862389838
Q ss_pred EEEEEEEE--C------CCHHHHHHHHHHHHHH----HCCCEEEEECCCC----HHHHHCCCCCHHHHHHH------HHH
Q ss_conf 99842320--4------7135888999999998----5496899817868----67752387405668989------999
Q gi|254781047|r 143 LCFDEFMI--T------NIADAIILSRLFAALF----SHGCIIVMTSNFI----PENLYKDEINRNVLVSF------IEL 200 (404)
Q Consensus 143 LCfDEF~V--~------DiaDAmil~rl~~~lf----~~gv~lV~TSN~~----P~dLY~~GLqR~~FlPf------I~~ 200 (404)
|||||+.- . -=+.+-++..|+..|= .+||.+|+--||| |.-|-++-|-+-+|.++ .++
T Consensus 608 IFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~I 687 (802)
T KOG0733 608 IFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAI 687 (802)
T ss_pred EEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECCCCHHHHHHH
T ss_conf 98511120276557777505899999999873162111425999506897655565518775574245069987889999
Q ss_pred HHHCCE--EEECCCCCHHH
Q ss_conf 985050--89804731122
Q gi|254781047|r 201 LEKKLE--IISLDSGQDYR 217 (404)
Q Consensus 201 lk~~~~--V~~l~~~~DYR 217 (404)
||.... -..|++.+|.-
T Consensus 688 LK~~tkn~k~pl~~dVdl~ 706 (802)
T KOG0733 688 LKTITKNTKPPLSSDVDLD 706 (802)
T ss_pred HHHHHCCCCCCCCCCCCHH
T ss_conf 9998535799887545899
No 46
>KOG0651 consensus
Probab=97.62 E-value=0.00089 Score=44.04 Aligned_cols=124 Identities=20% Similarity=0.267 Sum_probs=71.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCH-H--------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 66886499888887728999999998578111-4--------68889999999999999971311224665578078999
Q gi|254781047|r 63 YCSMQGIYLHGDVGQGKSMLMNLFFALVPIEK-K--------CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVA 133 (404)
Q Consensus 63 ~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~-K--------~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va 133 (404)
-.+|+|+-||||+|+|||++--+.+....+.- | ++++=-. .-|.++... |
T Consensus 163 Ik~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsa--RlIRemf~y-------------------A 221 (388)
T KOG0651 163 IKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESA--RLIRDMFRY-------------------A 221 (388)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCHH--HHHHHHHHH-------------------H
T ss_conf 7788256876799986459999999865985477447666330026578--899999977-------------------8
Q ss_pred HHHHCCCCEEEEEEEE--------ECCCHHHHHHHHHHHHHHH-------CCCEEEEECCCCHHHHHC-----CCCCHHH
Q ss_conf 9996138799984232--------0471358889999999985-------496899817868677523-----8740566
Q gi|254781047|r 134 SSIALESRVLCFDEFM--------ITNIADAIILSRLFAALFS-------HGCIIVMTSNFIPENLYK-----DEINRNV 193 (404)
Q Consensus 134 ~~l~~~~~lLCfDEF~--------V~DiaDAmil~rl~~~lf~-------~gv~lV~TSN~~P~dLY~-----~GLqR~~ 193 (404)
++... -+|++||.. =--.+|-||-+.|++-|-+ ..|.+|+|-|+ |+-||+ +-|-|--
T Consensus 222 ~~~~p--ciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNr-pdtLdpaLlRpGRldrk~ 298 (388)
T KOG0651 222 REVIP--CIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNR-PDTLDPALLRPGRLDRKV 298 (388)
T ss_pred HHHCC--EEEEEHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCEEEECCC-CCCCCHHHCCCCCCCCEE
T ss_conf 65275--577510123114577335552059999999999874214012066317985388-665665542875211100
Q ss_pred HHHHHHHHHHCCEEEECC
Q ss_conf 898999998505089804
Q gi|254781047|r 194 LVSFIELLEKKLEIISLD 211 (404)
Q Consensus 194 FlPfI~~lk~~~~V~~l~ 211 (404)
-+| +.-...+++|..+-
T Consensus 299 ~iP-lpne~~r~~I~Kih 315 (388)
T KOG0651 299 EIP-LPNEQARLGILKIH 315 (388)
T ss_pred CCC-CCCHHHCEEEEEEC
T ss_conf 268-85544240267623
No 47
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.59 E-value=7.2e-05 Score=50.97 Aligned_cols=102 Identities=18% Similarity=0.120 Sum_probs=67.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--HH-HHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf 64998888877289999999985781114688899999999999--99-9713112246655780789999996138799
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSR--II-MYRKKIEFGEILESDPIPLVASSIALESRVL 143 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~--l~-~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL 143 (404)
+-+-|.|.+|+|||+|-..+-..+.. .-.|++|+.+|.--+-- .. ..+..........+.|+..-.. .++
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~-~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~------~il 116 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGL-PFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR------VIL 116 (329)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCC-CCEEEECCCCCCHHHHCCHHHHHHHHCCCCEEEEECCCCCCCCC------EEE
T ss_conf 97787798987779999999998389-81899568998888820568887664257718984687334513------389
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHH--------------CCCEEEEECC
Q ss_conf 9842320471358889999999985--------------4968998178
Q gi|254781047|r 144 CFDEFMITNIADAIILSRLFAALFS--------------HGCIIVMTSN 178 (404)
Q Consensus 144 CfDEF~V~DiaDAmil~rl~~~lf~--------------~gv~lV~TSN 178 (404)
++||.- -|+.++..-|++.|-+ .+..+++|+|
T Consensus 117 l~DEIn---ra~p~~q~aLl~~l~e~~vt~~~~~~~~~~~~f~viaT~N 162 (329)
T COG0714 117 LLDEIN---RAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQN 162 (329)
T ss_pred EEECCC---CCCHHHHHHHHHHHHHCEEEECCCCCCCCCCCCEEEEECC
T ss_conf 987034---5898899999999972689707966533799878998268
No 48
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.57 E-value=0.00025 Score=47.57 Aligned_cols=113 Identities=15% Similarity=0.011 Sum_probs=58.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCHHHHHHHHHHCCC--C
Q ss_conf 8649988888772899999999857811146888999999999999997--13112246655780789999996138--7
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMY--RKKIEFGEILESDPIPLVASSIALES--R 141 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~--~~~~~~~~~~~~dpl~~va~~l~~~~--~ 141 (404)
++.++|+|++|+|||.++..+-..+.... ..+.+..=-.......... ..................+.+.+++. .
T Consensus 2 ~~~ill~G~~GsGKTtl~~~la~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD 80 (148)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCC-CCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97899999997029999999998726689-96899875998988898765300011221051999999999999844998
Q ss_pred EEEEEEEEECCCHHHHHHHHH-------HHHHHHCCCEEEEECCC
Q ss_conf 999842320471358889999-------99998549689981786
Q gi|254781047|r 142 VLCFDEFMITNIADAIILSRL-------FAALFSHGCIIVMTSNF 179 (404)
Q Consensus 142 lLCfDEF~V~DiaDAmil~rl-------~~~lf~~gv~lV~TSN~ 179 (404)
+|++||.+-..-.....+... ....-..+..+|+|+|.
T Consensus 81 viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~n~ 125 (148)
T smart00382 81 VLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred EEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
T ss_conf 999827502147620799999999998517657899899995699
No 49
>KOG0736 consensus
Probab=97.55 E-value=0.0018 Score=42.10 Aligned_cols=184 Identities=18% Similarity=0.243 Sum_probs=93.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf 49988888772899999999857811146888999999999999997131122466557807899999961387999842
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDE 147 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDE 147 (404)
||.|||++|+|||+|-.+--.-+... |-. ..=-+.|+.+-|+. .+|-=+...+.=...-=||+|||
T Consensus 707 GILLYGPPGTGKTLlAKAVATEcsL~------FlS--VKGPELLNMYVGqS------E~NVR~VFerAR~A~PCVIFFDE 772 (953)
T KOG0736 707 GILLYGPPGTGKTLLAKAVATECSLN------FLS--VKGPELLNMYVGQS------EENVREVFERARSAAPCVIFFDE 772 (953)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCEEE------EEE--ECCHHHHHHHHCCH------HHHHHHHHHHHHCCCCEEEEECC
T ss_conf 05887799985579999987543036------785--05889988774301------88899999985446974998312
Q ss_pred EEEC--------CCHHHH--HHHHHHHHH------HHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf 3204--------713588--899999999------854968998178686775238740566898999998505089804
Q gi|254781047|r 148 FMIT--------NIADAI--ILSRLFAAL------FSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD 211 (404)
Q Consensus 148 F~V~--------DiaDAm--il~rl~~~l------f~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~ 211 (404)
..=- |=+--| +.+.|+-.| -.++|++|.-+||| ||...-|=|.
T Consensus 773 LDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRP--DLLDpALLRP------------------- 831 (953)
T KOG0736 773 LDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRP--DLLDPALLRP------------------- 831 (953)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC--CCCCHHHCCC-------------------
T ss_conf 1232756788788654089999999998626667888865998258885--5457655388-------------------
Q ss_pred CCCHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCHHHHHHHHCCHHH
Q ss_conf 73112211236783022035302268999999986044446776327636808996122021111019998521024689
Q gi|254781047|r 212 SGQDYRRKEQSILPIYMTPLNSYNRVLMDKLWAHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSAND 291 (404)
Q Consensus 212 ~~~DYR~~~~~~~~~y~~p~~~~~~~~l~~~f~~l~~~~~~~~~~i~v~~gR~i~v~~~~~~va~f~F~eLC~~~lg~~D 291 (404)
.--.+..+...++....+. +....++.. +.. ..+|-...-.+.|...++-+|
T Consensus 832 ---------GRFDKLvyvG~~~d~esk~-~vL~AlTrk---------------FkL---dedVdL~eiAk~cp~~~TGAD 883 (953)
T KOG0736 832 ---------GRFDKLVYVGPNEDAESKL-RVLEALTRK---------------FKL---DEDVDLVEIAKKCPPNMTGAD 883 (953)
T ss_pred ---------CCCCEEEEECCCCCHHHHH-HHHHHHHHH---------------CCC---CCCCCHHHHHHHCCCCCCHHH
T ss_conf ---------7655248855885678899-999998877---------------028---787679999963896775247
Q ss_pred HHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999853788998189878724638999899999998
Q gi|254781047|r 292 FVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVF 328 (404)
Q Consensus 292 Yi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~l 328 (404)
.-+||. +...++++|=|.-||..
T Consensus 884 lYsLCS--------------dA~l~AikR~i~~ie~g 906 (953)
T KOG0736 884 LYSLCS--------------DAMLAAIKRTIHDIESG 906 (953)
T ss_pred HHHHHH--------------HHHHHHHHHHHHHHHHC
T ss_conf 999988--------------99999999997776505
No 50
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=97.53 E-value=5.4e-05 Score=51.77 Aligned_cols=138 Identities=20% Similarity=0.250 Sum_probs=74.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCHHHHHHHHHHCCC--
Q ss_conf 6886499888887728999999998578111468889999999999999-9713112246655780789999996138--
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRII-MYRKKIEFGEILESDPIPLVASSIALES-- 140 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~-~~~~~~~~~~~~~~dpl~~va~~l~~~~-- 140 (404)
.||||+.|||++|+|||+|-.+.-+...-.= -|+ |-+++- ++-|. +. -|-.=.=+||++-
T Consensus 154 ~PPKGvLLyGPPGtGKTLlAKAvA~et~ATF-Irv--------VgSElV~KyIGE---GA-----rLV~~~F~LAkEKaP 216 (364)
T TIGR01242 154 EPPKGVLLYGPPGTGKTLLAKAVAHETNATF-IRV--------VGSELVRKYIGE---GA-----RLVREVFELAKEKAP 216 (364)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHCCCCCEE-EEE--------EHHHHHHHHHCC---HH-----HHHHHHHHHHHCCCC
T ss_conf 9898657007579768899998631455126-886--------044444444133---16-----899999998530698
Q ss_pred CEEEEEEEEE--------CCCHHHHHHHHHHHHHHH-------CCCEEEEECCCC----HHHHHCCCCCH------HHHH
Q ss_conf 7999842320--------471358889999999985-------496899817868----67752387405------6689
Q gi|254781047|r 141 RVLCFDEFMI--------TNIADAIILSRLFAALFS-------HGCIIVMTSNFI----PENLYKDEINR------NVLV 195 (404)
Q Consensus 141 ~lLCfDEF~V--------~DiaDAmil~rl~~~lf~-------~gv~lV~TSN~~----P~dLY~~GLqR------~~Fl 195 (404)
.+||+||..- .-=+|==+=..|++-|-+ -+|.+|+..||+ |.=|=+|-.-| ..|-
T Consensus 217 sIiFIDEiDAiaakR~~~~TsGdREV~RTlmQLLAElDGFd~rg~VkviaATNR~DilDPA~LRPGRFDR~IEVPlP~~~ 296 (364)
T TIGR01242 217 SIIFIDEIDAIAAKRVDSSTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPAILRPGRFDRIIEVPLPDFE 296 (364)
T ss_pred CEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHCCCCCCCCCCCCCEEECCCCCCC
T ss_conf 16861013335432114677873157889999997524888767616887207620204321488861325731697832
Q ss_pred HHHHHHHHCCEEEECCCCCHHHH
Q ss_conf 89999985050898047311221
Q gi|254781047|r 196 SFIELLEKKLEIISLDSGQDYRR 218 (404)
Q Consensus 196 PfI~~lk~~~~V~~l~~~~DYR~ 218 (404)
-=+++|+=|..-..|....|.+.
T Consensus 297 GR~eIlkiHTr~~~la~dVdl~~ 319 (364)
T TIGR01242 297 GRLEILKIHTRKMKLAEDVDLEA 319 (364)
T ss_pred CHHHHHHHHHCCCCCCCCCCHHH
T ss_conf 20566555210000123568799
No 51
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.49 E-value=0.0011 Score=43.39 Aligned_cols=122 Identities=25% Similarity=0.297 Sum_probs=70.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCH---H----HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 886499888887728999999998578111---4----688899999999999999713112246655780789999996
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEK---K----CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIA 137 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~---K----~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~ 137 (404)
.||.+.-||++|+||||+-...-.-+..+- | ---|--+=-..||+....+++..
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~a------------------- 210 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAA------------------- 210 (368)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------------
T ss_conf 7541687789996487999987254578548711688888774359899999999887519-------------------
Q ss_pred CCCCEEEEEEEEECCCHHHHHHHHHHHHH-------------------HHCCCEEEEECCCCHHHHHCCCCCHHHHHHHH
Q ss_conf 13879998423204713588899999999-------------------85496899817868677523874056689899
Q gi|254781047|r 138 LESRVLCFDEFMITNIADAIILSRLFAAL-------------------FSHGCIIVMTSNFIPENLYKDEINRNVLVSFI 198 (404)
Q Consensus 138 ~~~~lLCfDEF~V~DiaDAmil~rl~~~l-------------------f~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI 198 (404)
--++++||+ ||.-|.|=++.| -+.||+.|+..|++ +-| +.--|.+|.--|
T Consensus 211 --PcivFiDE~------DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p-~~L--D~aiRsRFEeEI 279 (368)
T COG1223 211 --PCIVFIDEL------DAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRP-ELL--DPAIRSRFEEEI 279 (368)
T ss_pred --CEEEEEHHH------HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCH-HHC--CHHHHHHHHHEE
T ss_conf --849984002------455530457886454999999999850174457756999505984-650--788886556506
Q ss_pred -----------HHHHHCCEEEECCCCCHH
Q ss_conf -----------999850508980473112
Q gi|254781047|r 199 -----------ELLEKKLEIISLDSGQDY 216 (404)
Q Consensus 199 -----------~~lk~~~~V~~l~~~~DY 216 (404)
.+++.+..-+.|.-..|.
T Consensus 280 EF~LP~~eEr~~ile~y~k~~Plpv~~~~ 308 (368)
T COG1223 280 EFKLPNDEERLEILEYYAKKFPLPVDADL 308 (368)
T ss_pred EEECCCHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 56488858999999998985897655689
No 52
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.45 E-value=0.0019 Score=41.96 Aligned_cols=126 Identities=17% Similarity=0.270 Sum_probs=69.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC---CH---HHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 64998888877289999999985781---11---4688899999999999999--7131122466557807899999961
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPI---EK---KCRLHFYEFMKDVHSRIIM--YRKKIEFGEILESDPIPLVASSIAL 138 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~---~~---K~R~HFh~FM~~ih~~l~~--~~~~~~~~~~~~~dpl~~va~~l~~ 138 (404)
+..-|-|++|+|||-+..-+-..+-. +. -+|+ |.+++-..+.- +||. -+.-|..|.+++.+
T Consensus 200 NNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~I----~~LDlg~L~AGakyRGe-------FEeRLk~il~ev~~ 268 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV----LALDMGALVAGAKYRGE-------FEERLKGVLNDLAK 268 (857)
T ss_pred CCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCE----EEEEHHHHHHCCCCCHH-------HHHHHHHHHHHHHH
T ss_conf 99758789998899999999999983899978816902----47338878614765211-------79999999999984
Q ss_pred CC--CEEEEEEEEEC----CCHHHHHHHHHHHHHHHCC-CEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf 38--79998423204----7135888999999998549-68998178686775238740566898999998505089804
Q gi|254781047|r 139 ES--RVLCFDEFMIT----NIADAIILSRLFAALFSHG-CIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD 211 (404)
Q Consensus 139 ~~--~lLCfDEF~V~----DiaDAmil~rl~~~lf~~g-v~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~ 211 (404)
.- -+||+||.|.- .-.-+|=.+.+|+-...+| +.+|.+.- |++ |+.=+-+| ..|.++|+.+.++
T Consensus 269 ~~~~iILFIDEiHtlvGaG~~~G~~DaaNlLKPaLaRGelr~IGATT--~~E-Yrk~iEkD------~AL~RRFq~V~V~ 339 (857)
T PRK10865 269 QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATT--LDE-YRQYIEKD------AALERRFQKVFVA 339 (857)
T ss_pred CCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECC--HHH-HHHHCCCC------HHHHHHCCCCCCC
T ss_conf 78986999734354336887777534788867887379854999458--999-99871345------8899853710068
Q ss_pred C
Q ss_conf 7
Q gi|254781047|r 212 S 212 (404)
Q Consensus 212 ~ 212 (404)
.
T Consensus 340 E 340 (857)
T PRK10865 340 E 340 (857)
T ss_pred C
T ss_conf 9
No 53
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.36 E-value=0.0011 Score=43.40 Aligned_cols=119 Identities=15% Similarity=0.166 Sum_probs=73.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCH-----------------HHH----HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99888887728999999998578111-----------------468----889999999999999971311224665578
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIEK-----------------KCR----LHFYEFMKDVHSRIIMYRKKIEFGEILESD 127 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~~-----------------K~R----~HFh~FM~~ih~~l~~~~~~~~~~~~~~~d 127 (404)
+-+||++|+|||-+.-+|-..+-... +.- -+|.++... .. . ......|
T Consensus 39 lLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~~i~~~~~~~~~~~~--------~~--~-~~~~~~d 107 (337)
T PRK12402 39 LVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKKYLVEDPRFAHFYDD--------PK--R-KYKSVID 107 (337)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEECCCCHHHHHCC--------HH--H-CCCCHHH
T ss_conf 98889298489999999999967997567833311653113564001016642344201--------53--3-2773789
Q ss_pred HHHHHHHHHH------CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 0789999996------1387999842320471358889999999985496899817868677523874056689899999
Q gi|254781047|r 128 PIPLVASSIA------LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELL 201 (404)
Q Consensus 128 pl~~va~~l~------~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~l 201 (404)
.+..+.++.+ ..++++-+||-+--.....--|.++++..- ..+++|.+.|.+ +.+ |+.|
T Consensus 108 ~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq~aLlk~lEe~~-~~~~fIl~t~~~-~~i-------------i~tI 172 (337)
T PRK12402 108 NFKHILKEYASMRPLSADYKLILFDNAEALREDAQQALRRIMERYS-ETCRFIFSTTQP-SKL-------------IPPI 172 (337)
T ss_pred HHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCC-CCEEEEEECCCC-CCC-------------CHHH
T ss_conf 9999999986148877880499970713179999999998874088-766998723864-447-------------5247
Q ss_pred HHCCEEEECCCC
Q ss_conf 850508980473
Q gi|254781047|r 202 EKKLEIISLDSG 213 (404)
Q Consensus 202 k~~~~V~~l~~~ 213 (404)
..+|..+++...
T Consensus 173 ~SRC~~i~F~~~ 184 (337)
T PRK12402 173 RSRCLPLFFRPV 184 (337)
T ss_pred HHHCEEEECCCC
T ss_conf 762445435898
No 54
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=97.34 E-value=0.00025 Score=47.55 Aligned_cols=85 Identities=29% Similarity=0.347 Sum_probs=51.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf 9988888772899999999857811----146888999999999999997131122466557807899999961387999
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIE----KKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC 144 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~----~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC 144 (404)
|||||+.|+|||.++..+-..+-.. .+.++ ...+|-...-+... .-.+.+
T Consensus 1 i~l~G~~G~GKS~~a~~la~~~~~~~~~~~~~~~-------------------------Y~~~~~~~~wdgY~-gq~vvi 54 (105)
T pfam00910 1 IWLYGPPGCGKSTLAKYLARALLDHLGLPKKDSV-------------------------YSRNPDDDFWDGYT-GQPVVI 54 (105)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCE-------------------------EECCCCCCCCCCCC-CCEEEE
T ss_conf 9897999898899999999999998377878977-------------------------96788776567889-985799
Q ss_pred EEEE-EECCCH-HHHHHHHHHH---------HHHHCC-----CEEEEECCC
Q ss_conf 8423-204713-5888999999---------998549-----689981786
Q gi|254781047|r 145 FDEF-MITNIA-DAIILSRLFA---------ALFSHG-----CIIVMTSNF 179 (404)
Q Consensus 145 fDEF-~V~Dia-DAmil~rl~~---------~lf~~g-----v~lV~TSN~ 179 (404)
+||| ++.|-. +.+.+-|+.. .+-++| ..+|+|||.
T Consensus 55 ~DD~~~~~~~~~~~~~~~~lvs~~p~~~~ma~le~Kg~~f~s~~vi~tsN~ 105 (105)
T pfam00910 55 IDDFGQNPDGPSDEAELIRLVSSTPYPPPMAALEEKGTPFTSKFVIVTSNF 105 (105)
T ss_pred EECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEECCC
T ss_conf 965777888628899999875699838886676148884468889994799
No 55
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.30 E-value=0.00041 Score=46.16 Aligned_cols=108 Identities=18% Similarity=0.168 Sum_probs=59.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH----HHHCCCCE
Q ss_conf 64998888877289999999985781114688899999999999999713112246655780789999----99613879
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVAS----SIALESRV 142 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~----~l~~~~~l 142 (404)
.-+-+||++|+|||-|-.+.-..+. .+|.++ +... .+.+| |..+.. ....+..|
T Consensus 38 ~s~Il~GPPG~GKTTlA~iiA~~~~------~~f~~l--------nA~~-------~gv~d-ir~ii~~a~~~~~~~~ti 95 (417)
T PRK13342 38 SSMILWGPPGTGKTTLARIIAGATD------AEFEAL--------SAVT-------SGVKD-LREVIEEAKQSRLGRRTI 95 (417)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC------CCEEEE--------ECCC-------CCHHH-HHHHHHHHHHHHCCCCEE
T ss_conf 7599889699989999999999868------988996--------1410-------38899-999999988631489659
Q ss_pred EEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH-HHHCCCCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf 9984232047135888999999998549689981786867-752387405668989999985050898047
Q gi|254781047|r 143 LCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPE-NLYKDEINRNVLVSFIELLEKKLEIISLDS 212 (404)
Q Consensus 143 LCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~-dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~ 212 (404)
|++||.|--+-+---. |+..+=+--+++|.+.---|- .+ ...|..+|.|+.+..
T Consensus 96 lfiDEIHRfnK~QQD~---LLp~vE~g~iiLIgATTENP~f~i-------------n~aLlSRc~vf~l~~ 150 (417)
T PRK13342 96 LFIDEIHRFNKAQQDA---LLPHVEDGTITLIGATTENPSFEV-------------NPALLSRAQVFELKP 150 (417)
T ss_pred EEEECHHHCCHHHHHH---HHHHHHCCCEEEEEECCCCCHHHC-------------CHHHHHHHHHEECCC
T ss_conf 9997820058899999---987511265699974157922534-------------898985657002058
No 56
>KOG0732 consensus
Probab=97.30 E-value=0.00047 Score=45.82 Aligned_cols=112 Identities=19% Similarity=0.270 Sum_probs=71.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 66688649988888772899999999857811146888999999999999997131122466557807899999961387
Q gi|254781047|r 62 KYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR 141 (404)
Q Consensus 62 ~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~ 141 (404)
.-++|||+-+||++|+|||...-..-.+++-.. +++-| ||..--+-+..|-+..... ---+...| -....-
T Consensus 295 ~itpPrgvL~~GppGTGkTl~araLa~~~s~~~-~kisf--fmrkgaD~lskwvgEaERq----lrllFeeA--~k~qPS 365 (1080)
T KOG0732 295 NITPPRGVLFHGPPGTGKTLMARALAAACSRGN-RKISF--FMRKGADCLSKWVGEAERQ----LRLLFEEA--QKTQPS 365 (1080)
T ss_pred CCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCC-CCCCH--HHHCCCHHHCCCCCCHHHH----HHHHHHHH--HCCCCE
T ss_conf 668986323028998725688886665405411-02024--4314844332544757788----99889887--444851
Q ss_pred EEEEEEEE----EC----CCHHHHHHHHHHHHHHH---C-CCEEEEECCCCHH
Q ss_conf 99984232----04----71358889999999985---4-9689981786867
Q gi|254781047|r 142 VLCFDEFM----IT----NIADAIILSRLFAALFS---H-GCIIVMTSNFIPE 182 (404)
Q Consensus 142 lLCfDEF~----V~----DiaDAmil~rl~~~lf~---~-gv~lV~TSN~~P~ 182 (404)
+++|||.. |. +-..|-|...||--+.. + -|++|...||++.
T Consensus 366 IIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda 418 (1080)
T KOG0732 366 IIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDA 418 (1080)
T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCC
T ss_conf 77305556646565366777445677778876047777786589715678332
No 57
>KOG0734 consensus
Probab=97.26 E-value=0.0087 Score=37.74 Aligned_cols=159 Identities=25% Similarity=0.337 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH----H
Q ss_conf 999999999999861354333225664310246666668864998888877289999999985781114688899----9
Q gi|254781047|r 27 SVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY----E 102 (404)
Q Consensus 27 ~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh----~ 102 (404)
.|-.+|+.+-+=|++. .-|.++.+ .-|||+.|-|++|+|||||--+.---+.++ + || +
T Consensus 311 EAK~ELeEiVefLkdP-----~kftrLGG--------KLPKGVLLvGPPGTGKTlLARAvAGEA~VP----F-F~~sGSE 372 (752)
T KOG0734 311 EAKQELEEIVEFLKDP-----TKFTRLGG--------KLPKGVLLVGPPGTGKTLLARAVAGEAGVP----F-FYASGSE 372 (752)
T ss_pred HHHHHHHHHHHHHCCC-----HHHHHCCC--------CCCCCEEEECCCCCCHHHHHHHHHCCCCCC----E-EECCCCC
T ss_conf 8999999999986090-----87643147--------588853876899975569999860556897----4-7416620
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEE----CCCHHH----HHHHHHHHHH----HHCC
Q ss_conf 999999999997131122466557807899999961387999842320----471358----8899999999----8549
Q gi|254781047|r 103 FMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDEFMI----TNIADA----IILSRLFAAL----FSHG 170 (404)
Q Consensus 103 FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF~V----~DiaDA----mil~rl~~~l----f~~g 170 (404)
| ++|..-.|... -=...+..-+.---+|+|||..- ...-|. +-|..|+-.+ -+.|
T Consensus 373 F-----dEm~VGvGArR--------VRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeG 439 (752)
T KOG0734 373 F-----DEMFVGVGARR--------VRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEG 439 (752)
T ss_pred H-----HHHHHCCCHHH--------HHHHHHHHHHCCCEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 4-----45422014899--------9999999873498599972002205667862778999899999998428676886
Q ss_pred CEEEEECCCCHHHHHCCCCCH-HHH-----------HHHHHHHHHCCEEEECCCCCHHHH
Q ss_conf 689981786867752387405-668-----------989999985050898047311221
Q gi|254781047|r 171 CIIVMTSNFIPENLYKDEINR-NVL-----------VSFIELLEKKLEIISLDSGQDYRR 218 (404)
Q Consensus 171 v~lV~TSN~~P~dLY~~GLqR-~~F-----------lPfI~~lk~~~~V~~l~~~~DYR~ 218 (404)
|++|+--|+ |++|=+ -|-| -+| --=-++|+.++.-+.++.++|--.
T Consensus 440 iIvigATNf-pe~LD~-AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~i 497 (752)
T KOG0734 440 IIVIGATNF-PEALDK-ALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKI 497 (752)
T ss_pred EEEEECCCC-HHHHHH-HHCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 699951687-455568-7348875533674689773328999999983487656778767
No 58
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.23 E-value=0.001 Score=43.66 Aligned_cols=115 Identities=16% Similarity=0.173 Sum_probs=68.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC----HHHHHHHHHH---CCCC
Q ss_conf 99888887728999999998578111468889999999999999971311224665578----0789999996---1387
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESD----PIPLVASSIA---LESR 141 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~d----pl~~va~~l~---~~~~ 141 (404)
+-+||++|+|||-+--.+-..+-... .+.|+. +++.. . . ...| -+..+|+.-. ..++
T Consensus 40 lLf~GppG~GKTt~a~~la~~l~~~~-~~~~~l--------elnas-----d-~-r~id~vr~~i~~~~~~~~~~~~~~k 103 (318)
T PRK00440 40 LLFAGPPGTGKTTAALALARELYGEY-WRENFL--------ELNAS-----D-E-RGIDVIRNKIKEFARTAPVGGAPFK 103 (318)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC-CCCCEE--------EECCC-----C-C-CCHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 98889599889999999999976986-434768--------95164-----5-6-6717899999999972677899738
Q ss_pred EEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCC
Q ss_conf 9998423204713588899999999854968998178686775238740566898999998505089804731
Q gi|254781047|r 142 VLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQ 214 (404)
Q Consensus 142 lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~ 214 (404)
++.+||.+--.-...--|.+.++.. ...+.+|.|.|.+ +.+ |+.|..+|..+.+....
T Consensus 104 iiiiDE~d~l~~~aq~aL~~~mE~~-~~~~~fil~~n~~-~ki-------------i~~i~SRc~~i~f~~~~ 161 (318)
T PRK00440 104 IIFLDEADNLTSDAQQALRRTMEMY-SQTTRFILSCNYS-SKI-------------IDPIQSRCAVFRFSPLP 161 (318)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC-CCCCEEEEECCCC-CCC-------------CCCHHHHHEEEECCCCC
T ss_conf 9998685532255678887643105-6662588634883-337-------------61556551011157899
No 59
>KOG0742 consensus
Probab=97.22 E-value=0.0062 Score=38.70 Aligned_cols=94 Identities=24% Similarity=0.363 Sum_probs=51.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHH-------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 66688649988888772899999999857811146-------88899999999999999713112246655780789999
Q gi|254781047|r 62 KYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKC-------RLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVAS 134 (404)
Q Consensus 62 ~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~-------R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~ 134 (404)
...+-|.+..||++|+||||.-.-+-...-..... -+- -+=.-.|| .++.|.++
T Consensus 380 h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG-~qaVTkiH-~lFDWakk----------------- 440 (630)
T KOG0742 380 HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLG-AQAVTKIH-KLFDWAKK----------------- 440 (630)
T ss_pred CCCHHHHEEEECCCCCCHHHHHHHHHHHCCCCEEHHCCCCCCCCH-HHHHHHHH-HHHHHHHH-----------------
T ss_conf 243044003247999860499999988528741001378755521-78899999-98788751-----------------
Q ss_pred HHHCCCCEEEEEEEEECCCHHHHHHHHH------------HHHHH-----HCCCEEEEECCCCHH
Q ss_conf 9961387999842320471358889999------------99998-----549689981786867
Q gi|254781047|r 135 SIALESRVLCFDEFMITNIADAIILSRL------------FAALF-----SHGCIIVMTSNFIPE 182 (404)
Q Consensus 135 ~l~~~~~lLCfDEF~V~DiaDAmil~rl------------~~~lf-----~~gv~lV~TSN~~P~ 182 (404)
++..-||++|| |||.+-.|- =--|| .+.++||..||+|-+
T Consensus 441 --S~rGLllFIDE------ADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgd 497 (630)
T KOG0742 441 --SRRGLLLFIDE------ADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGD 497 (630)
T ss_pred --CCCCEEEEEHH------HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
T ss_conf --56644998611------6789987520102588999998898762565542689960588321
No 60
>KOG0744 consensus
Probab=97.19 E-value=0.00031 Score=46.95 Aligned_cols=148 Identities=19% Similarity=0.231 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHH-----HHCCCC-CCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 999999999861354333225664-----310246-66666886499888887728999999998578111468889999
Q gi|254781047|r 30 KSFDRLLVDLYKQQKQEQGIFSWL-----WNLRGI-KRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEF 103 (404)
Q Consensus 30 ~~L~~L~~~l~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~F 103 (404)
.+++.+++.|.-...-+..+.+.. ++..+- ..--+-.|=+.+|||+|+|||-|-..+.+.+.+.---|. .+.-
T Consensus 135 ~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y-~~~~ 213 (423)
T KOG0744 135 AEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRY-YKGQ 213 (423)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHEEEECCCC-CCCE
T ss_conf 154305788764132899999999999888761788744664148998579998822799999875146523764-4406
Q ss_pred HHHH--HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE--EEEEEE-----------CCCHHHHHHHH-HHHHHH
Q ss_conf 9999--9999997131122466557807899999961387999--842320-----------47135888999-999998
Q gi|254781047|r 104 MKDV--HSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC--FDEFMI-----------TNIADAIILSR-LFAALF 167 (404)
Q Consensus 104 M~~i--h~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC--fDEF~V-----------~DiaDAmil~r-l~~~lf 167 (404)
|.|| |+..-+|-+..+.- ..-..++|..-+..+.-++| +||.+- +.+.|||-.-. |+..+=
T Consensus 214 liEinshsLFSKWFsESgKl---V~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlD 290 (423)
T KOG0744 214 LIEINSHSLFSKWFSESGKL---VAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLD 290 (423)
T ss_pred EEEEEHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 99970467889887121138---999999999997178968999807878889998754137998218999999999899
Q ss_pred ----HCCCEEEEECCCCH
Q ss_conf ----54968998178686
Q gi|254781047|r 168 ----SHGCIIVMTSNFIP 181 (404)
Q Consensus 168 ----~~gv~lV~TSN~~P 181 (404)
..++.+.+|||-.-
T Consensus 291 rlK~~~NvliL~TSNl~~ 308 (423)
T KOG0744 291 RLKRYPNVLILATSNLTD 308 (423)
T ss_pred HHCCCCCEEEEECCCHHH
T ss_conf 860479779996262677
No 61
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=97.19 E-value=0.00017 Score=48.57 Aligned_cols=171 Identities=18% Similarity=0.244 Sum_probs=81.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 8864998888877289999999985781114688899-----99999999999971311224665578078999999613
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY-----EFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALE 139 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh-----~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~ 139 (404)
.|||+-|+||+|+|||+|-.+----+.++ |- +| -+|+- +.+.+...|-.+.. .++
T Consensus 91 IPKGVLLvGPPGTGKTLLAKAvAGEA~VP------FF~iSGSdF-----VEMFV-----GVGASRVRDLFeqA----K~n 150 (505)
T TIGR01241 91 IPKGVLLVGPPGTGKTLLAKAVAGEAGVP------FFSISGSDF-----VEMFV-----GVGASRVRDLFEQA----KKN 150 (505)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHCCCCCC------CEEECCCCE-----EECCC-----CCCCEEHHHHHHHH----HHH
T ss_conf 98714731787842467887520258896------247407610-----11120-----56400014457999----971
Q ss_pred CC-EEEEEEEEECCCHHHH--------------HHHHHHHHH----HHCCCEEEEECCCC----HHHHHCCCCCHHHHH-
Q ss_conf 87-9998423204713588--------------899999999----85496899817868----677523874056689-
Q gi|254781047|r 140 SR-VLCFDEFMITNIADAI--------------ILSRLFAAL----FSHGCIIVMTSNFI----PENLYKDEINRNVLV- 195 (404)
Q Consensus 140 ~~-lLCfDEF~V~DiaDAm--------------il~rl~~~l----f~~gv~lV~TSN~~----P~dLY~~GLqR~~Fl- 195 (404)
++ ||||||.- =|+=.- -|..||-.+ -+-||+|+|--||| |-=|=++-.=|+-.+
T Consensus 151 APCIIFIDEID--AVGr~RGaG~lGGGnDEREQTLNQLLVEMDGF~~~~gvIv~AATNRPDvLD~ALLRPGRFDRQv~V~ 228 (505)
T TIGR01241 151 APCIIFIDEID--AVGRQRGAGELGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVD 228 (505)
T ss_pred CCCEEEEECHH--HCCCCCCCCCCCCCCCHHHHHHHHHHEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECC
T ss_conf 89705640100--0033356436676541355433233133178589885799850488411651006878744513458
Q ss_pred -HH----HHHHHHCCEEEECCCCCHHHHCC-----CCCCCE-----------EEECCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf -89----99998505089804731122112-----367830-----------2203530226899999998604444677
Q gi|254781047|r 196 -SF----IELLEKKLEIISLDSGQDYRRKE-----QSILPI-----------YMTPLNSYNRVLMDKLWAHITKGKKSLS 254 (404)
Q Consensus 196 -Pf----I~~lk~~~~V~~l~~~~DYR~~~-----~~~~~~-----------y~~p~~~~~~~~l~~~f~~l~~~~~~~~ 254 (404)
|= =++|+=|..=+.|+...|=..-. -++++. =.....+-+-..++++..+...|.+..+
T Consensus 229 ~PD~~GR~~IL~VH~~~~kLa~~vdL~~~Ar~TPGfSGADLaNl~NEAALlAAR~n~~~i~~~~~eeA~Drv~~G~ekKs 308 (505)
T TIGR01241 229 LPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAVDRVIAGLEKKS 308 (505)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHCCCCCCC
T ss_conf 88746789999998548899702477999701568767889999999999986179865628889878776522766788
Q ss_pred CCE
Q ss_conf 632
Q gi|254781047|r 255 LNI 257 (404)
Q Consensus 255 ~~i 257 (404)
..+
T Consensus 309 r~i 311 (505)
T TIGR01241 309 RVI 311 (505)
T ss_pred CCC
T ss_conf 532
No 62
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=97.16 E-value=0.0025 Score=41.18 Aligned_cols=107 Identities=22% Similarity=0.287 Sum_probs=59.5
Q ss_pred CCCCCCCEEEE-ECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHHHH------CCCCCCCCCCCCHHHHH
Q ss_conf 66668864998-88887728999999998578111468889999-999999999971------31122466557807899
Q gi|254781047|r 61 RKYCSMQGIYL-HGDVGQGKSMLMNLFFALVPIEKKCRLHFYEF-MKDVHSRIIMYR------KKIEFGEILESDPIPLV 132 (404)
Q Consensus 61 ~~~~~~kGlYL-~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~F-M~~ih~~l~~~~------~~~~~~~~~~~dpl~~v 132 (404)
..+..|-|-|| .||-|+|||=|---+-+ ..=|||=.| |.|=..+=.-.| |-.+..+++. |.
T Consensus 521 ~~~nkP~GSFLF~GPTGVGKTElak~LA~------~LGv~l~RFDMSEYmEKHTVsRLIGsPPGYVGfEqGGL---LT-- 589 (774)
T TIGR02639 521 GEPNKPVGSFLFVGPTGVGKTELAKQLAE------ELGVHLLRFDMSEYMEKHTVSRLIGSPPGYVGFEQGGL---LT-- 589 (774)
T ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHH------HHCCHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC---CH--
T ss_conf 77888168888647989625788999999------70820010465044689999874168888513167772---12--
Q ss_pred HHHHHCC-CCEEEEEEEEECCCHHHHHHHHHHHHHHH--------------CCCEEEEECCCCHHH
Q ss_conf 9999613-87999842320471358889999999985--------------496899817868677
Q gi|254781047|r 133 ASSIALE-SRVLCFDEFMITNIADAIILSRLFAALFS--------------HGCIIVMTSNFIPEN 183 (404)
Q Consensus 133 a~~l~~~-~~lLCfDEF~V~DiaDAmil~rl~~~lf~--------------~gv~lV~TSN~~P~d 183 (404)
+.+-+. +-||.+||.+= |..=|..=||+-+ + ++|+||||||.=-.+
T Consensus 590 -~AvrK~P~cVLLLDEIEK---AHpDI~NILLQVM-D~AtLTDN~GrKaDFRNVILIMTSNaGa~E 650 (774)
T TIGR02639 590 -DAVRKHPHCVLLLDEIEK---AHPDIYNILLQVM-DYATLTDNNGRKADFRNVILIMTSNAGARE 650 (774)
T ss_pred -HHHCCCCCEEEHHHHHHH---HHHHHHHHHHHHH-CCCEEECCCCCEEEECCEEEEECCCCCCCC
T ss_conf -233128853542346666---3133666787663-354340588857631136888403700102
No 63
>PRK06921 hypothetical protein; Provisional
Probab=97.10 E-value=0.0044 Score=39.65 Aligned_cols=74 Identities=22% Similarity=0.319 Sum_probs=55.8
Q ss_pred HHHHHHHHHHCCEEEECCC--CCCCCCCHHH-H-HHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 6899999853788998189--8787246389-9-9899999998228982899807897880134676531348998988
Q gi|254781047|r 289 ANDFVEIANRFDVVIINDI--PLLKEDRKDW-I-KRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSR 364 (404)
Q Consensus 289 ~~DYi~Ia~~f~ti~I~~V--P~l~~~~~d~-a-rRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SR 364 (404)
...++......+.++|+|+ |..+.+..++ + -.+-.+|+.=|-++.+.++|++..+++|-. -+ +|+.||
T Consensus 167 ~~~~l~~~~~~dlLIIDDLfk~~~G~e~~te~~~~~lf~iIN~Ry~~~kptIiSSNl~~~~L~~---i~-----e~i~SR 238 (265)
T PRK06921 167 LEAKLNRMKKVEVLFIDDLFKPVNGKPRATEWQIEQTYSVVNYRYLNHKPILISSELTIDELLD---ID-----EALGSR 238 (265)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH---HH-----HHHHHH
T ss_conf 9999998632999998221223479878988999999999999997699989986899899987---63-----798888
Q ss_pred HHHHCC
Q ss_conf 745242
Q gi|254781047|r 365 LYEMFS 370 (404)
Q Consensus 365 L~EMqS 370 (404)
|.||.+
T Consensus 239 i~emc~ 244 (265)
T PRK06921 239 IVEMCK 244 (265)
T ss_pred HHHHCC
T ss_conf 999725
No 64
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.10 E-value=0.012 Score=36.95 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=11.9
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 998888877289999999985
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFAL 89 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~ 89 (404)
.-|-|.+|+|||-+..-+-+.
T Consensus 211 PiLVGepGVGKTAIvEGLA~r 231 (852)
T TIGR03345 211 PILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CEEECCCCCCHHHHHHHHHHH
T ss_conf 746579998799999999999
No 65
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0093 Score=37.56 Aligned_cols=114 Identities=21% Similarity=0.251 Sum_probs=70.2
Q ss_pred CCCCCCEEEE-ECCCCCCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCHHHHHHH
Q ss_conf 6668864998-888877289999999985781--11468889999999999999971311----2246655780789999
Q gi|254781047|r 62 KYCSMQGIYL-HGDVGQGKSMLMNLFFALVPI--EKKCRLHFYEFMKDVHSRIIMYRKKI----EFGEILESDPIPLVAS 134 (404)
Q Consensus 62 ~~~~~kGlYL-~G~VG~GKT~LMdlFy~~l~~--~~K~R~HFh~FM~~ih~~l~~~~~~~----~~~~~~~~dpl~~va~ 134 (404)
.+..|-|.+| -|+-|+|||-|....-+.+-. ..--|+---+||.. .....+.|.. +..+++ ..-.
T Consensus 516 dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek--HsVSrLIGaPPGYVGyeeGG------~LTE 587 (786)
T COG0542 516 DPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK--HSVSRLIGAPPGYVGYEEGG------QLTE 587 (786)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECHHHHHHH--HHHHHHHCCCCCCCEECCCC------CHHH
T ss_conf 999873578866788656999999999996599744455456877778--77998727999872006554------0037
Q ss_pred HHHCC-CCEEEEEEEEECCCHHHHHHHHHHHHHHH--------------CCCEEEEECCCCHHHHHCC
Q ss_conf 99613-87999842320471358889999999985--------------4968998178686775238
Q gi|254781047|r 135 SIALE-SRVLCFDEFMITNIADAIILSRLFAALFS--------------HGCIIVMTSNFIPENLYKD 187 (404)
Q Consensus 135 ~l~~~-~~lLCfDEF~V~DiaDAmil~rl~~~lf~--------------~gv~lV~TSN~~P~dLY~~ 187 (404)
.+-++ +.|+.|||++=-++ =++.-|++-| + +++++|+|||.--+.+-.+
T Consensus 588 aVRr~PySViLlDEIEKAHp---dV~nilLQVl-DdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~ 651 (786)
T COG0542 588 AVRRKPYSVILLDEIEKAHP---DVFNLLLQVL-DDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRD 651 (786)
T ss_pred HHHCCCCEEEEECHHHHCCH---HHHHHHHHHH-CCCCEECCCCCEEECCEEEEEEECCCCHHHHHHH
T ss_conf 66069986888412644088---9999999984-6780554899888430028998450265989753
No 66
>KOG1051 consensus
Probab=97.08 E-value=0.016 Score=36.11 Aligned_cols=119 Identities=20% Similarity=0.160 Sum_probs=81.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC-C
Q ss_conf 6886499888887728999999998578111--468889999999999999971311224665578078999999613-8
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEK--KCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALE-S 140 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~--K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~-~ 140 (404)
.++--+-+-|+-|+|||=|-...-+.+-... --|+-+-+||. +- ++. +. ...-....-...++..+... +
T Consensus 589 ~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e-vs-kli---gs--p~gyvG~e~gg~LteavrrrP~ 661 (898)
T KOG1051 589 NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE-VS-KLI---GS--PPGYVGKEEGGQLTEAVKRRPY 661 (898)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECHHHHHH-HH-HCC---CC--CCCCCCCHHHHHHHHHHHCCCC
T ss_conf 88858999788841389999999999728864268961455555-65-304---89--9555463057788899716996
Q ss_pred CEEEEEEEEECCCHHHHHHHHHHHHH----------HHCCCEEEEECCCCHHHHHCCCC
Q ss_conf 79998423204713588899999999----------85496899817868677523874
Q gi|254781047|r 141 RVLCFDEFMITNIADAIILSRLFAAL----------FSHGCIIVMTSNFIPENLYKDEI 189 (404)
Q Consensus 141 ~lLCfDEF~V~DiaDAmil~rl~~~l----------f~~gv~lV~TSN~~P~dLY~~GL 189 (404)
.|+.|||.+-.|.-.-++|..+++.- --+++++|+|||..-+.+-.+..
T Consensus 662 sVvLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~ 720 (898)
T KOG1051 662 SVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIANDAS 720 (898)
T ss_pred EEEEEECHHHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEEEECCCCHHHHHCCCC
T ss_conf 59998302222888999999998627400588867504645999942631666640454
No 67
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.07 E-value=0.0056 Score=38.94 Aligned_cols=98 Identities=17% Similarity=0.231 Sum_probs=44.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCHHHHHHHHHHCC-
Q ss_conf 99888887728999999998578111------4688899999999999999--71311224665578078999999613-
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIEK------KCRLHFYEFMKDVHSRIIM--YRKKIEFGEILESDPIPLVASSIALE- 139 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~~------K~R~HFh~FM~~ih~~l~~--~~~~~~~~~~~~~dpl~~va~~l~~~- 139 (404)
.-|-|.+|+|||-+..-+-..+-... .+|+ |.+++-.-+.- +||. -+.-|..|.+++.+.
T Consensus 197 piLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i----~~LDlg~LvAGtkyRGe-------FEeRlk~ii~ev~~~~ 265 (852)
T TIGR03346 197 PVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRL----LALDMGALIAGAKYRGE-------FEERLKAVLNEVTKSE 265 (852)
T ss_pred CCEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCC----EEEEHHHHHCCCCCCHH-------HHHHHHHHHHHHHHCC
T ss_conf 721279998799999999999866999978851851----27528877521530078-------9999999999998589
Q ss_pred -CCEEEEEEEEEC----CCHHHHHHHHHHHHHHHCC-CEEEEEC
Q ss_conf -879998423204----7135888999999998549-6899817
Q gi|254781047|r 140 -SRVLCFDEFMIT----NIADAIILSRLFAALFSHG-CIIVMTS 177 (404)
Q Consensus 140 -~~lLCfDEF~V~----DiaDAmil~rl~~~lf~~g-v~lV~TS 177 (404)
--+|+|||.|.- --.-+|=.+++|+-...+| +.+|.+.
T Consensus 266 ~~iILFIDEiHtliGaG~~~G~~DAaNlLKPaLarGelr~IgAT 309 (852)
T TIGR03346 266 GQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGAT 309 (852)
T ss_pred CCEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 98799961255532688766641067774378747985599827
No 68
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.00 E-value=0.0055 Score=38.99 Aligned_cols=99 Identities=17% Similarity=0.217 Sum_probs=50.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 6499888887728999999998578111------4688899999999999999--7131122466557807899999961
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEK------KCRLHFYEFMKDVHSRIIM--YRKKIEFGEILESDPIPLVASSIAL 138 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~------K~R~HFh~FM~~ih~~l~~--~~~~~~~~~~~~~dpl~~va~~l~~ 138 (404)
+..-|-|++|+|||-+..-+-..+.... -+|+ |.+++-..+.- +||. -+.-|..|.+++.+
T Consensus 201 NNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i----~sLDl~~L~AGtkyRGe-------FEeRlk~il~ei~~ 269 (823)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLV----LTLDIGLLLAGTKYRGE-------FEERIKKIMDEIKK 269 (823)
T ss_pred CCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCE----EEEEHHHHHHCCCCCHH-------HHHHHHHHHHHHHH
T ss_conf 88502379998799999999997608899868759936----88428877533422267-------99999999999985
Q ss_pred CCC-EEEEEEEEEC---CCH-HHHHHHHHHHHHHHCC-CEEEEE
Q ss_conf 387-9998423204---713-5888999999998549-689981
Q gi|254781047|r 139 ESR-VLCFDEFMIT---NIA-DAIILSRLFAALFSHG-CIIVMT 176 (404)
Q Consensus 139 ~~~-lLCfDEF~V~---Dia-DAmil~rl~~~lf~~g-v~lV~T 176 (404)
.-. +|++||.|.- --+ -+|=.+.+++-...+| +.+|.+
T Consensus 270 ~~~iILFIDEiHtlvGaG~~~g~~DaaNlLKPaLarGel~~IGA 313 (823)
T CHL00095 270 ANNIILVIDEIHTLIGAGAAEGAIDAANILKPALARGKLQCIGA 313 (823)
T ss_pred CCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 79869997351653288976664317887657864898669970
No 69
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=96.90 E-value=0.0022 Score=41.48 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=59.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-HHHHHHHHHHCCCCEEE
Q ss_conf 4998888877289999999985781114--68889999999999999971311224665578-07899999961387999
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKK--CRLHFYEFMKDVHSRIIMYRKKIEFGEILESD-PIPLVASSIALESRVLC 144 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K--~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~d-pl~~va~~l~~~~~lLC 144 (404)
-+-+.|+-|+|||+|-..+-+.+...++ .|++.-+|+.+ ..+..+-+....--..... .|...++ .....|++
T Consensus 5 ~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~--~~v~~l~g~~~gyvg~~~~G~l~~~v~--~~p~~Vil 80 (168)
T pfam07724 5 SFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEE--HSVSRLIGAPPGYVGYEEGGQLTEAVR--RKPYSIVL 80 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCH--HHHHHHCCCCCCCCCCCCCCCHHHHHH--HCCCCEEE
T ss_conf 99988989989999999999996798534488557565425--699987058998726242650789998--38984898
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHCC--------------CEEEEECCCCHHHH
Q ss_conf 84232047135888999999998549--------------68998178686775
Q gi|254781047|r 145 FDEFMITNIADAIILSRLFAALFSHG--------------CIIVMTSNFIPENL 184 (404)
Q Consensus 145 fDEF~V~DiaDAmil~rl~~~lf~~g--------------v~lV~TSN~~P~dL 184 (404)
|||++=-+ .-+..-|++ +++.| +++|+|||..-+++
T Consensus 81 lDEIeKa~---~~V~~~LL~-ild~g~~~d~~g~~v~~~n~i~i~Tsn~g~~~~ 130 (168)
T pfam07724 81 IDEIEKAH---PGVQNDLLQ-ILEGGTLTDKQGRKVDFRNTLFIMTGNFGSEKI 130 (168)
T ss_pred EHHHHHHC---HHHHHHHHH-HCCCCCEECCCCCEEECCCEEEEECCCCCCHHH
T ss_conf 65776658---999999998-705870636999678446479997687372999
No 70
>KOG0737 consensus
Probab=96.87 E-value=0.00075 Score=44.52 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=21.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 8864998888877289999999985
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFAL 89 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~ 89 (404)
+|+|+.|||++|+|||||-...-.-
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Ake 150 (386)
T KOG0737 126 PPKGILLYGPPGTGKTMLAKAIAKE 150 (386)
T ss_pred CCCCCEECCCCCCHHHHHHHHHHHH
T ss_conf 8643051189982188999999987
No 71
>PRK08116 hypothetical protein; Validated
Probab=96.86 E-value=0.013 Score=36.61 Aligned_cols=79 Identities=23% Similarity=0.438 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHCCEEEECCCCCCCCCCHHHH-HHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 4689999985378899818987872463899-989999999822898289980789788013467653134899898874
Q gi|254781047|r 288 SANDFVEIANRFDVVIINDIPLLKEDRKDWI-KRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLY 366 (404)
Q Consensus 288 g~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~a-rRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~ 366 (404)
+..+++.-..+.+.++|+|+=.-. ..+.+ -.+-.+||.-|.++.+.++++.-++++|-.. + -.|+.|||.
T Consensus 162 ~~~e~l~~l~~~dLLIiDDlG~e~--~t~w~~e~lf~IIn~Ry~~~kptIiTTNl~~~eL~~~------~-~~Ri~sRl~ 232 (262)
T PRK08116 162 DENEIIRALDNADLLILDDLGAEK--DTEWVREKLYNIIDSRYRKGLPTIFTTNLSLEELKNQ------Y-GKRTYSRIL 232 (262)
T ss_pred HHHHHHHHHHCCCEEEEEHHCCCC--CCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHH------H-HHHHHHHHH
T ss_conf 199999986129989983221456--9878999999999999976999899879999999998------6-379999998
Q ss_pred HHCCHHHHH
Q ss_conf 524278897
Q gi|254781047|r 367 EMFSAQYIG 375 (404)
Q Consensus 367 EMqS~~yl~ 375 (404)
||...--+.
T Consensus 233 e~~~~v~~~ 241 (262)
T PRK08116 233 EMCTPVKNE 241 (262)
T ss_pred HCCEEEEEE
T ss_conf 677899851
No 72
>pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family.
Probab=96.84 E-value=0.044 Score=33.26 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 4998888877289999999985781
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
-+.|||+=|+|||-|+.-|.+.+..
T Consensus 22 ~ivi~G~RR~GKTsLi~~~~~~~~~ 46 (223)
T pfam01637 22 IIVVYGPRRCGKTALLREFLEELRE 46 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 8999868878799999999986334
No 73
>KOG0729 consensus
Probab=96.76 E-value=0.0057 Score=38.92 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=21.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 68864998888877289999999985
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFAL 89 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~ 89 (404)
-||+|+.+||++|+|||++--+.-+.
T Consensus 209 dPPKGvllyGPPGtGKTL~ARAVANR 234 (435)
T KOG0729 209 DPPKGVLLYGPPGTGKTLCARAVANR 234 (435)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHCC
T ss_conf 99873378689998610899987456
No 74
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.72 E-value=0.0031 Score=40.61 Aligned_cols=110 Identities=18% Similarity=0.163 Sum_probs=59.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH---H-H--HCC
Q ss_conf 864998888877289999999985781114688899999999999999713112246655780789999---9-9--613
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVAS---S-I--ALE 139 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~---~-l--~~~ 139 (404)
...+-+||++|+|||-|-.+.-+... .||..+ +.. .++.+| |..|.+ + + ..+
T Consensus 52 ~~S~Il~GPPGtGKTTLA~iIA~~t~------~~F~~l--------sAv-------~sgvkd-lr~ii~~A~~~~~~~g~ 109 (726)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHTR------AHFSSL--------NAV-------LAGVKD-LRAEVDAAKERLERHGK 109 (726)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC------CCEEEE--------ECC-------CCCHHH-HHHHHHHHHHHHHHCCC
T ss_conf 98278889799999999999988748------867998--------562-------037799-99999999999874599
Q ss_pred CCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf 8799984232047135888999999998549689981786867752387405668989999985050898047
Q gi|254781047|r 140 SRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS 212 (404)
Q Consensus 140 ~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~ 212 (404)
..|||+||.|=-+=+--- -|+..+=+--|+||.+..-.|-- -+ +..|-.+|.|+.+..
T Consensus 110 ~tILFIDEIHRfNK~QQD---~LLp~vE~G~i~LIGATTENP~F----~v--------n~ALlSR~~vf~L~~ 167 (726)
T PRK13341 110 RTILFIDEVHRFNKAQQD---ALLPWVENGTVTLIGATTENPYF----EV--------NKALVSRSRLFRLKS 167 (726)
T ss_pred CEEEEEECHHHCCHHHHH---HHHHHHCCCEEEEEEECCCCCCE----EE--------CHHHHHHCEEEEECC
T ss_conf 659998625425887899---87888606838999704789743----64--------298883234667438
No 75
>KOG0652 consensus
Probab=96.72 E-value=0.0023 Score=41.44 Aligned_cols=162 Identities=19% Similarity=0.287 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHHHHHHHHHCCC---CCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 005899999999748877898-999999999999999861354---3332256643102466666688649988888772
Q gi|254781047|r 3 LDLVSSRLISLIQDKKLKYNP-AQESVVKSFDRLLVDLYKQQK---QEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQG 78 (404)
Q Consensus 3 ~~~~~~~y~~~v~~~~i~~D~-~Q~~~i~~L~~L~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~G 78 (404)
+..+.+.|...|+.-++..-| .|..-|.-|++-.++|.+.-- ..+-.|.. . ...||+|+.+||++|+|
T Consensus 146 letLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~----l----gi~pPKGvLmYGPPGTG 217 (424)
T KOG0652 146 LETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFEN----L----GIRPPKGVLMYGPPGTG 217 (424)
T ss_pred HHCCCHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHH----C----CCCCCCCEEEECCCCCC
T ss_conf 210876663010144504687432000325789999999886145656878874----6----88899722765799975
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCHHHHH--HHHHHCCC--CEEEEEEEEE---
Q ss_conf 89999999985781114688899999999999999-7131122466557807899--99996138--7999842320---
Q gi|254781047|r 79 KSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIM-YRKKIEFGEILESDPIPLV--ASSIALES--RVLCFDEFMI--- 150 (404)
Q Consensus 79 KT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~-~~~~~~~~~~~~~dpl~~v--a~~l~~~~--~lLCfDEF~V--- 150 (404)
||++--..-.... . .|..-.--.|.+ +-| |.-..| |=.++++- .+|++||..-
T Consensus 218 KTlmARAcAaqT~------a---TFLKLAgPQLVQMfIG----------dGAkLVRDAFaLAKEkaP~IIFIDElDAIGt 278 (424)
T KOG0652 218 KTLMARACAAQTN------A---TFLKLAGPQLVQMFIG----------DGAKLVRDAFALAKEKAPTIIFIDELDAIGT 278 (424)
T ss_pred HHHHHHHHHHHCC------C---HHHHHCCHHHHHHHHC----------CHHHHHHHHHHHHHCCCCEEEEEECHHHHCC
T ss_conf 7799999987401------0---6887326477766533----------4188999999875334983899730023233
Q ss_pred -----CCCHHHHHHHHHHHHHH-------HCCCEEEEECCCC----HHHHHCCCCCH
Q ss_conf -----47135888999999998-------5496899817868----67752387405
Q gi|254781047|r 151 -----TNIADAIILSRLFAALF-------SHGCIIVMTSNFI----PENLYKDEINR 191 (404)
Q Consensus 151 -----~DiaDAmil~rl~~~lf-------~~gv~lV~TSN~~----P~dLY~~GLqR 191 (404)
.--+|--.-...++-|- +..|.+|+..||. |.-|-.+.|-|
T Consensus 279 KRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDR 335 (424)
T KOG0652 279 KRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDR 335 (424)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHCCCCCC
T ss_conf 436531234389999999999860489975626788521643434888864466444
No 76
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=96.71 E-value=0.01 Score=37.31 Aligned_cols=161 Identities=20% Similarity=0.302 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 05899999999748877898999999999999999861354333225664310246666668864998888877289999
Q gi|254781047|r 4 DLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLM 83 (404)
Q Consensus 4 ~~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LM 83 (404)
+.+...+-...+.+.+..+..|.+|+..+.. -|=.=|-||+|+|||-+.
T Consensus 334 ~~~Q~hi~eve~~~~~~l~~~Qk~AL~~~~~-------------------------------~Kv~iLTGGPGTGKtT~t 382 (769)
T TIGR01448 334 EDLQKHILEVEKKLRLKLSEEQKEALKTAIQ-------------------------------DKVVILTGGPGTGKTTIT 382 (769)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-------------------------------CCEEEEECCCCCCHHHHH
T ss_conf 8999999986875067706889999999860-------------------------------948998577888616899
Q ss_pred HHHHHH------------------------CCCCH-HHHHHHHHHH----HHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 999985------------------------78111-4688899999----999999999713112246655780789999
Q gi|254781047|r 84 NLFFAL------------------------VPIEK-KCRLHFYEFM----KDVHSRIIMYRKKIEFGEILESDPIPLVAS 134 (404)
Q Consensus 84 dlFy~~------------------------l~~~~-K~R~HFh~FM----~~ih~~l~~~~~~~~~~~~~~~dpl~~va~ 134 (404)
..-.+. +|+.| -||+ .|.- .-||+.|-. ..+.......+.|
T Consensus 383 ~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAPTGrAAkRl--~E~TG~~a~TIHRLlG~-~~~~~~~~k~~~~------- 452 (769)
T TIGR01448 383 KAIIELYEELKGLDLDKDDYVNDDLPVVLAAPTGRAAKRL--AEVTGLEALTIHRLLGY-GSDTKSENKNLED------- 452 (769)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHC--CCCCCCHHHHHHHHHCC-CCCCCCCCHHHCC-------
T ss_conf 9999999871687755312456776488737743788851--10026212347786368-9888732110113-------
Q ss_pred HHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHC-CCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHH-CCEEEECCC
Q ss_conf 99613879998423204713588899999999854-9689981786867752387405668989999985-050898047
Q gi|254781047|r 135 SIALESRVLCFDEFMITNIADAIILSRLFAALFSH-GCIIVMTSNFIPENLYKDEINRNVLVSFIELLEK-KLEIISLDS 212 (404)
Q Consensus 135 ~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~-gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~-~~~V~~l~~ 212 (404)
--+|+||-+||+-- -|-.++.+||..+-.+ .+.||-=+---|.= =+ | .|+-++|.. ...++.|-
T Consensus 453 --~~~~DL~IvDE~SM---~Dt~L~~~lL~a~P~~a~lllVGD~DQLPSV-~p-G------~VL~DLi~s~~iP~~~LT- 518 (769)
T TIGR01448 453 --PIDADLLIVDESSM---VDTWLASSLLAAVPDHARLLLVGDADQLPSV-GP-G------QVLKDLIQSKVIPVTRLT- 518 (769)
T ss_pred --CCCCCEEEEECCCH---HHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-CC-C------HHHHHHHHCCCCCEEECC-
T ss_conf --47877699814621---8899999998617977779888376888988-64-4------089999846886612121-
Q ss_pred CCHHHHCC
Q ss_conf 31122112
Q gi|254781047|r 213 GQDYRRKE 220 (404)
Q Consensus 213 ~~DYR~~~ 220 (404)
+=||...
T Consensus 519 -~vyRQ~~ 525 (769)
T TIGR01448 519 -KVYRQAE 525 (769)
T ss_pred -CEEEECC
T ss_conf -1124113
No 77
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=96.70 E-value=0.015 Score=36.24 Aligned_cols=118 Identities=16% Similarity=0.178 Sum_probs=63.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHH--HHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf 49988888772899999999857811146--8889999-99999999997131122466557807899999961387999
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKC--RLHFYEF-MKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC 144 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~--R~HFh~F-M~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC 144 (404)
-|.|.|+.|+||+++-...++..+-+.+. .++...+ -..+...|+-..+..-.+.......+. +.+ +.-.|+
T Consensus 24 pVLI~GE~GtGK~~lAr~IH~~S~r~~~pfi~vnc~~~~~~~le~~LFG~~~g~f~ga~~~~~G~l----e~A-~gGTL~ 98 (168)
T pfam00158 24 TVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTGAVSDRKGLF----ELA-DGGTLF 98 (168)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCE----EEC-CCCEEE
T ss_conf 889989998888999999998524356883125678998779999875876676689875789964----226-998788
Q ss_pred EEEEEECCCHHHHHHHHHHHHHH-------------HCCCEEEEECCCCHHHHHCCCCCHHH
Q ss_conf 84232047135888999999998-------------54968998178686775238740566
Q gi|254781047|r 145 FDEFMITNIADAIILSRLFAALF-------------SHGCIIVMTSNFIPENLYKDEINRNV 193 (404)
Q Consensus 145 fDEF~V~DiaDAmil~rl~~~lf-------------~~gv~lV~TSN~~P~dLY~~GLqR~~ 193 (404)
+||..--+..-- .+|+..|- .-.+.+|+||+..+.++-..|..|+.
T Consensus 99 LdeI~~L~~~~Q---~~Ll~~L~~~~~~~~g~~~~~~~~vRiIast~~~L~~~v~~G~Fr~D 157 (168)
T pfam00158 99 LDEIGELPLELQ---AKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFRED 157 (168)
T ss_pred CCCHHHCCHHHH---HHHHHHHHCCEEEECCCCCEEEEEEEEEEECCCCHHHHHHCCCCHHH
T ss_conf 024413999999---99999985796997799845888549999659889999883996399
No 78
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.67 E-value=0.0025 Score=41.19 Aligned_cols=131 Identities=11% Similarity=0.076 Sum_probs=79.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHH--HH-----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHC-
Q ss_conf 649988888772899999999857811146--88-----8999999999999997131122466557807899999961-
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKC--RL-----HFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIAL- 138 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~--R~-----HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~- 138 (404)
.-+.++|+.|+|||-+.-.+-..+-..... -- .-+.++..-|..++++.-..........+-+..+++....
T Consensus 25 halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~ 104 (325)
T COG0470 25 HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSES 104 (325)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 61003799999789999999999658664334552002244432025688659977321333300699999999860446
Q ss_pred ----CCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf ----38799984232047135888999999998549689981786867752387405668989999985050898047
Q gi|254781047|r 139 ----ESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS 212 (404)
Q Consensus 139 ----~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~ 212 (404)
..+++.+||-.--....|=.+.+.++.- ...+++|.++| .|..+ +..|+.+|.++.+..
T Consensus 105 ~~~~~~kviiidead~mt~~A~nallk~lEep-~~~~~~il~~n-~~~~i-------------l~tI~SRc~~i~f~~ 167 (325)
T COG0470 105 PLEGGYKVVIIDEADKLTEDAANALLKTLEEP-PKNTRFILITN-DPSKI-------------LPTIRSRCQRIRFKP 167 (325)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHCCCC-CCCEEEEEEEC-CHHHC-------------HHHHHHHEEEEECCC
T ss_conf 56677269997320326988887675433248-88716999749-85556-------------478775607887677
No 79
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=96.61 E-value=0.0065 Score=38.57 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 499888887728999999998578
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
-+-+||++|+|||-|--++-..+.
T Consensus 52 h~lf~GPPG~GKTTlAriiAk~~~ 75 (234)
T pfam05496 52 HVLLYGPPGLGKTTLANIIANEMG 75 (234)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 278878999988899999998408
No 80
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.61 E-value=0.016 Score=36.00 Aligned_cols=139 Identities=21% Similarity=0.374 Sum_probs=82.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCH-HHHH---HHH------HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 886499888887728999999998578111-4688---899------999999999999713112246655780789999
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEK-KCRL---HFY------EFMKDVHSRIIMYRKKIEFGEILESDPIPLVAS 134 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~-K~R~---HFh------~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~ 134 (404)
..+-|-|.|++|+|||+|-..|-.++-..+ ..|+ -|| +|+.. +|-.. .+-...+-|+..+++
T Consensus 193 tKknvIL~G~pGtGKT~lAk~lA~~l~g~~~~~rv~~VqfhpsysYEDfi~G-------yrp~~-~gf~~~~G~f~~~~~ 264 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQG-------YRPNG-VGFRRKDGIFYNFCQ 264 (459)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCC-------CCCCC-CCCEECCCHHHHHHH
T ss_conf 5882796589998878999999999707887784689983588661787646-------05688-861326836999999
Q ss_pred HHHCC---CCEEEEEEEEECCCHHHHHHHHHHHHHHH--CC---CEEEEECC------CCHHHHHCCCC-C-HHHHHHHH
Q ss_conf 99613---87999842320471358889999999985--49---68998178------68677523874-0-56689899
Q gi|254781047|r 135 SIALE---SRVLCFDEFMITNIADAIILSRLFAALFS--HG---CIIVMTSN------FIPENLYKDEI-N-RNVLVSFI 198 (404)
Q Consensus 135 ~l~~~---~~lLCfDEF~V~DiaDAmil~rl~~~lf~--~g---v~lV~TSN------~~P~dLY~~GL-q-R~~FlPfI 198 (404)
+-..+ --++|+||+---+++ -|++.|+.-+=. +| .+-..-|+ .-|++||-=|- | -|+=+.++
T Consensus 265 ~A~~~p~~~y~~iideinr~~~~--~~fgel~~liE~dkR~~~~~~~l~ys~~~~~~f~vP~Nl~iigtmNtadrs~~~~ 342 (459)
T PRK11331 265 QAKEQPEKKYVFIIDEINRANLS--KVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVV 342 (459)
T ss_pred HHHHCCCCCEEEEEEHHHCCCHH--HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEECCCCCEEEEEECCCCCHHHHHH
T ss_conf 99849898769998432033889--9999999996412567652256300368885334688659998503341068878
Q ss_pred H-HHHHCCEEEECCCC
Q ss_conf 9-99850508980473
Q gi|254781047|r 199 E-LLEKKLEIISLDSG 213 (404)
Q Consensus 199 ~-~lk~~~~V~~l~~~ 213 (404)
+ +|.+++.-+++.-+
T Consensus 343 d~alrRrf~f~~~~pd 358 (459)
T PRK11331 343 DYALRRRFSFIDIEPG 358 (459)
T ss_pred HHHHHHHHCCEECCCC
T ss_conf 9999865021215898
No 81
>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=96.55 E-value=0.012 Score=36.78 Aligned_cols=76 Identities=12% Similarity=0.145 Sum_probs=51.8
Q ss_pred HHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHH------
Q ss_conf 99853788998189878724638999899999998228982899807897880134676531348998988745------
Q gi|254781047|r 294 EIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLYE------ 367 (404)
Q Consensus 294 ~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~E------ 367 (404)
.|++....+|++++-+-+ .--|--.-.|.+.|.++++.|++++..+|++||. ++-..-.|-.++.=|.+
T Consensus 122 ~l~~~~~lLCfDEFqV~D---IaDAMIL~rLf~~Lf~~gvvlV~TSN~~P~~LY~--~GLqR~~FlPfI~ll~~~~~v~~ 196 (361)
T pfam03969 122 RFANEARLLCFDEFEVDD---IGDAMILGRLFEALFARGVSLVATSNTAPEQLYR--NGLNRQRFLPAIDLLESHFEVVR 196 (361)
T ss_pred HHHHCCCEEEEEEEEECC---HHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHC--CCCCHHHHHHHHHHHHHHCEEEE
T ss_conf 997258779976356167---8889999999999997797899808999899836--87417788999999998678998
Q ss_pred HCC-HHHH
Q ss_conf 242-7889
Q gi|254781047|r 368 MFS-AQYI 374 (404)
Q Consensus 368 MqS-~~yl 374 (404)
|.| .+|=
T Consensus 197 l~~~~DYR 204 (361)
T pfam03969 197 VDGPVDYR 204 (361)
T ss_pred ECCCCCCC
T ss_conf 15987805
No 82
>pfam00931 NB-ARC NB-ARC domain.
Probab=96.52 E-value=0.034 Score=33.97 Aligned_cols=105 Identities=12% Similarity=0.109 Sum_probs=53.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHH----------HHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCHHHHHHH
Q ss_conf 864998888877289999999985781114----------688899999999999999713112246-655780789999
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKK----------CRLHFYEFMKDVHSRIIMYRKKIEFGE-ILESDPIPLVAS 134 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K----------~R~HFh~FM~~ih~~l~~~~~~~~~~~-~~~~dpl~~va~ 134 (404)
.+=|-|||-.|.|||-|....|+...++.. +..--.+.+..|...+. ....... ....+....+.+
T Consensus 19 ~~vI~I~G~gGiGKTtLA~~v~~~~~i~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~---~~~~~~~~~~~~~l~~~l~~ 95 (285)
T pfam00931 19 LGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTYTEFRLQKDILQELG---LDDSDWVEKNESELAVKIKE 95 (285)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHC---CCCCCCCCCCHHHHHHHHHH
T ss_conf 539998899956399999999716556505983899997976668999999999856---66545555789999999999
Q ss_pred HHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHH--HCCCEEEEECC
Q ss_conf 996138799984232047135888999999998--54968998178
Q gi|254781047|r 135 SIALESRVLCFDEFMITNIADAIILSRLFAALF--SHGCIIVMTSN 178 (404)
Q Consensus 135 ~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf--~~gv~lV~TSN 178 (404)
.+.++--||.|| ||-+.-.+..+...+- ..|-.+|.||-
T Consensus 96 ~L~~kr~LiVLD-----DVw~~~~~~~l~~~~~~~~~gSrIIvTTR 136 (285)
T pfam00931 96 ALLRKRFLLVLD-----DVWEKNDWDKIGVPFPDGENGSRVIVTTR 136 (285)
T ss_pred HHCCCCEEEEEC-----CCCCHHHHHHHHCCCCCCCCCCEEEEECC
T ss_conf 972796699963-----88878999997345757899827998557
No 83
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.51 E-value=0.013 Score=36.69 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 8864998888877289999999985781
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
+-.=+=|-|+-|.|||-|+.+....++.
T Consensus 62 ~Ge~vaIVG~sGSGKSTLl~lL~gl~~p 89 (282)
T cd03291 62 KGEMLAITGSTGSGKTSLLMLILGELEP 89 (282)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9999999999998199999999578727
No 84
>pfam05673 DUF815 Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.
Probab=96.50 E-value=0.0044 Score=39.65 Aligned_cols=94 Identities=19% Similarity=0.247 Sum_probs=56.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC--E
Q ss_conf 88649988888772899999999857811146888999999999999997131122466557807899999961387--9
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR--V 142 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~--l 142 (404)
|..-+-|||.-|+|||=|..+.......+ ..|+ .||+. . .-.-|+.+...+...-. +
T Consensus 52 pAnnvLLwG~RGtGKSSlVKall~~~~~~-gLrl------IEv~k-------~-------~L~~Lp~i~~~l~~~~~kFI 110 (248)
T pfam05673 52 PANNVLLWGARGTGKSSLVKALLNEYADQ-GLRL------IEVDK-------D-------DLGDLPDIVDLLRGRPYRFI 110 (248)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHC-CCEE------EEECH-------H-------HHCCHHHHHHHHHCCCCCEE
T ss_conf 86136767689898889999999986314-9569------99878-------8-------87219999999964997579
Q ss_pred EEEEEE--EECCCHHHHHHHHHHHHHH---HCCCEEEEECCCC
Q ss_conf 998423--2047135888999999998---5496899817868
Q gi|254781047|r 143 LCFDEF--MITNIADAIILSRLFAALF---SHGCIIVMTSNFI 180 (404)
Q Consensus 143 LCfDEF--~V~DiaDAmil~rl~~~lf---~~gv~lV~TSN~~ 180 (404)
|++|-. .-.| ++--.|+.+++.=. -.+|.+.+||||-
T Consensus 111 iF~DDLSFe~~d-~~yk~LKs~LeG~l~~~p~NvliYaTSNRR 152 (248)
T pfam05673 111 LFCDDLSFEEGE-SSYKALKSVLEGGLEARPDNVLIYATSNRR 152 (248)
T ss_pred EEECCCCCCCCC-HHHHHHHHHHCCCCCCCCCEEEEEEECCCH
T ss_conf 996355767897-369999999657644688738999842700
No 85
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.37 E-value=0.025 Score=34.82 Aligned_cols=18 Identities=11% Similarity=0.122 Sum_probs=7.8
Q ss_pred HHHHHHHHHHCCCCCEEE
Q ss_conf 899999998228982899
Q gi|254781047|r 320 RFIMLIDVFYEHKIGLII 337 (404)
Q Consensus 320 RFI~LID~lYd~kv~Li~ 337 (404)
.=|++-=+++-+---|++
T Consensus 492 QRiaiARAll~~~~ILIL 509 (588)
T PRK11174 492 QRLALARALLQPCQLLLL 509 (588)
T ss_pred HHHHHHHHHHCCCCEEEE
T ss_conf 999999998379898999
No 86
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.025 Score=34.85 Aligned_cols=112 Identities=18% Similarity=0.148 Sum_probs=74.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH------HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 649988888772899999999857811146888999------99999999999713112246655780789999996138
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYE------FMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALES 140 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~------FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~ 140 (404)
.=+-|-|+-|+|||-|+++..-.++... -.+.|.. ...+..+.+-..-+ . ++..---..+|..++.+.
T Consensus 26 e~~~i~G~nGaGKSTLl~~l~gl~~~~~-G~i~~~g~~~~~~~~~~~~~~i~~v~Q-L----SgGqkqrv~iA~al~~~p 99 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTS-GEILIDGKDIAKLPLEELRRRIGYVPQ-L----SGGQRQRVALARALLLNP 99 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCC-CEEEECCEECCCCCHHHHHHCCCCCCC-C----CHHHHHHHHHHHHHHCCC
T ss_conf 7999987889998999999958847996-289999999997999999940608766-8----869999999999997099
Q ss_pred CEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 79998423-204713588899999999854968998178686775
Q gi|254781047|r 141 RVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404)
Q Consensus 141 ~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404)
++|++||- -=-|+..+-.+..++..+-+.|..+|.+|-...+-.
T Consensus 100 ~ililDEPtsgLD~~~~~~l~~~i~~l~~~g~tii~vtH~~~~~~ 144 (157)
T cd00267 100 DLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 999996987668999999999999999968999999908999999
No 87
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0055 Score=39.03 Aligned_cols=134 Identities=19% Similarity=0.297 Sum_probs=81.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC--
Q ss_conf 688649988888772899999999857811146888999999999999997131122466557807899999961387--
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR-- 141 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~-- 141 (404)
.-|+|+-|.|++|+|||+|--.--..+.++-. .+--.+| -+|+--.+. +. +.++..+++
T Consensus 181 kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf-~iSGS~F-----VemfVGvGA-----sR--------VRdLF~qAkk~ 241 (596)
T COG0465 181 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFF-SISGSDF-----VEMFVGVGA-----SR--------VRDLFEQAKKN 241 (596)
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHCCCCCCCE-ECCCHHH-----HHHHCCCCC-----HH--------HHHHHHHHHCC
T ss_conf 34565268559998727899998454689835-3034446-----443147883-----88--------89999985515
Q ss_pred ---EEEEEEEEECCCHHHH-------------HHHHHHHHH--HH--CCCEEEEECCCC----HHHHHCCCCCHHHHHH-
Q ss_conf ---9998423204713588-------------899999999--85--496899817868----6775238740566898-
Q gi|254781047|r 142 ---VLCFDEFMITNIADAI-------------ILSRLFAAL--FS--HGCIIVMTSNFI----PENLYKDEINRNVLVS- 196 (404)
Q Consensus 142 ---lLCfDEF~V~DiaDAm-------------il~rl~~~l--f~--~gv~lV~TSN~~----P~dLY~~GLqR~~FlP- 196 (404)
++++||-. -|+..- -|..|+..+ |. .||++++-.||+ |.-|.++..-|+-.++
T Consensus 242 aP~IIFIDEiD--AvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~ 319 (596)
T COG0465 242 APCIIFIDEID--AVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVEL 319 (596)
T ss_pred CCCEEEEEHHH--HCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHCCCCCCCEEEECCC
T ss_conf 99669876343--3145457788998069999998888520157888754885267874333176528877662554478
Q ss_pred -HHH----HHHHCCEEEECCCCCHHHH
Q ss_conf -999----9985050898047311221
Q gi|254781047|r 197 -FIE----LLEKKLEIISLDSGQDYRR 218 (404)
Q Consensus 197 -fI~----~lk~~~~V~~l~~~~DYR~ 218 (404)
-|. +++-|..-..++..+|+..
T Consensus 320 PDi~gRe~IlkvH~~~~~l~~~V~l~~ 346 (596)
T COG0465 320 PDIKGREQILKVHAKNKPLAEDVDLKK 346 (596)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 515657888788641577776678889
No 88
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.27 E-value=0.051 Score=32.88 Aligned_cols=26 Identities=35% Similarity=0.653 Sum_probs=22.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 64998888877289999999985781
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
.=+-|-|+-|+|||-||.+....++.
T Consensus 29 ei~~l~G~NGaGKTTLlk~i~Gl~~p 54 (206)
T PRK13539 29 EALVLTGPNGSGKTTLLRLLAGLLPP 54 (206)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 49999899999899999999588788
No 89
>TIGR00362 DnaA chromosomal replication initiator protein DnaA; InterPro: IPR001957 The bacterial dnaA protein , , plays an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) .; GO: 0003677 DNA binding, 0003688 DNA replication origin binding, 0005524 ATP binding, 0006270 DNA replication initiation, 0006275 regulation of DNA replication.
Probab=96.26 E-value=0.02 Score=35.45 Aligned_cols=135 Identities=19% Similarity=0.157 Sum_probs=84.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 88649988888772899999999857811----14688899999999999999713112246655780789999996138
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIE----KKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALES 140 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~----~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~ 140 (404)
+..-+++|||+|.|||++|...-+..-.. +-..+|-..|+.+.-..+.... +.. -+..-..+
T Consensus 180 ~~~p~~~~gg~glg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~ 245 (493)
T TIGR00362 180 AYNPLFLYGGTGLGKTHLLHAIGNGVLELHPNAKVLYVTSENFLNDFVKALRDNK-------------LDD-FKKKYRSL 245 (493)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHH-------------HHH-HHHHHHHC
T ss_conf 6562477447542156787776434443067732788501467899998752001-------------688-88876311
Q ss_pred CEEEEEEEEECC--CHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH----------CCCCC----HHHHHHHHHHHHHC
Q ss_conf 799984232047--135888999999998549689981786867752----------38740----56689899999850
Q gi|254781047|r 141 RVLCFDEFMITN--IADAIILSRLFAALFSHGCIIVMTSNFIPENLY----------KDEIN----RNVLVSFIELLEKK 204 (404)
Q Consensus 141 ~lLCfDEF~V~D--iaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY----------~~GLq----R~~FlPfI~~lk~~ 204 (404)
+.+.+|+.+..- -...--+-..|..+...+--+|.||.+.|.++- .-|+. ...+..-+.++++.
T Consensus 246 d~~l~dd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~p~~~~~~~~~l~~~~~~g~~~~~~~p~~~~~~~~~~~~ 325 (493)
T TIGR00362 246 DFLLIDDIQFLAGKEKTQEEFFHTFNALHEDGKQIVLTSDRSPKEIPGLEDRLKSRFGWGLTADIEPPDLETRLAILKKK 325 (493)
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHH
T ss_conf 12311104764135203688888888774068527885166620100046777654301410002465235789998865
Q ss_pred CEEEECCCC
Q ss_conf 508980473
Q gi|254781047|r 205 LEIISLDSG 213 (404)
Q Consensus 205 ~~V~~l~~~ 213 (404)
|+...++-+
T Consensus 326 ~~~~~~~~p 334 (493)
T TIGR00362 326 AEEDGINLP 334 (493)
T ss_pred HHHCCCCCH
T ss_conf 443035652
No 90
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.23 E-value=0.007 Score=38.35 Aligned_cols=95 Identities=18% Similarity=0.177 Sum_probs=59.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC--CE
Q ss_conf 8864998888877289999999985781114688899999999999999713112246655780789999996138--79
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALES--RV 142 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~--~l 142 (404)
+-+-+.|||.=|+|||=|..+.+.....+. .| ..|||..= -.-|+.+...|...- =+
T Consensus 84 pANnVLLwGaRGtGKSSLVKA~~~e~~~~g-lr------LVEV~k~d--------------l~~Lp~l~~~Lr~~~~kFI 142 (287)
T COG2607 84 PANNVLLWGARGTGKSSLVKALLNEYADEG-LR------LVEVDKED--------------LATLPDLVELLRARPEKFI 142 (287)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCC-CE------EEEECHHH--------------HHHHHHHHHHHHCCCCEEE
T ss_conf 652367763777774799999999987417-70------79976888--------------8657999999961886089
Q ss_pred EEEEEEE-ECCCHHHHHHHHHHHHHHH---CCCEEEEECCCC
Q ss_conf 9984232-0471358889999999985---496899817868
Q gi|254781047|r 143 LCFDEFM-ITNIADAIILSRLFAALFS---HGCIIVMTSNFI 180 (404)
Q Consensus 143 LCfDEF~-V~DiaDAmil~rl~~~lf~---~gv~lV~TSN~~ 180 (404)
|+.|.+- =++=...--|+..++.=.. .+|++.+||||-
T Consensus 143 lFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 143 LFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred EEECCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCC
T ss_conf 995677777781389999998538855688707999715875
No 91
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.018 Score=35.80 Aligned_cols=113 Identities=16% Similarity=0.105 Sum_probs=52.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHHH-------HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHC--
Q ss_conf 4998888877289999999985781114688-------8999999999999997131122466557807899999961--
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRL-------HFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIAL-- 138 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~-------HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~-- 138 (404)
-+||||+.|+|||..+....+.+..+..... +... +-.|-.++...-+.....+....+-+..+.+.+.+
T Consensus 44 n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t-~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~ 122 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRT-PYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKG 122 (366)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC-HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 079988999873289999999997331567579995130787-8799999999826899767632689999999777418
Q ss_pred CCCEEEEEEEEECCCHHHHHHHHHHHHHH--HCCCEEEEECCCCH
Q ss_conf 38799984232047135888999999998--54968998178686
Q gi|254781047|r 139 ESRVLCFDEFMITNIADAIILSRLFAALF--SHGCIIVMTSNFIP 181 (404)
Q Consensus 139 ~~~lLCfDEF~V~DiaDAmil~rl~~~lf--~~gv~lV~TSN~~P 181 (404)
..-++-+||+.---=.+..+|-.|+..-- ..++.+|+.||...
T Consensus 123 ~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~ 167 (366)
T COG1474 123 KTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDK 167 (366)
T ss_pred CEEEEEECCHHHHHCCCCCHHHHEECCCCCCCEEEEEEEEECCHH
T ss_conf 759999764765415464145511124776753799999735488
No 92
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.10 E-value=0.04 Score=33.57 Aligned_cols=25 Identities=36% Similarity=0.576 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 4998888877289999999985781
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
=+-|-|+-|+|||-|+.+.....+.
T Consensus 32 ~v~ivG~sGsGKSTLl~ll~gl~~p 56 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRLVEL 56 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9999999999899999999679718
No 93
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.09 E-value=0.021 Score=35.30 Aligned_cols=181 Identities=18% Similarity=0.186 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999999999999986135433322566431024666666886499888887728999999998578111468889999
Q gi|254781047|r 24 AQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEF 103 (404)
Q Consensus 24 ~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~F 103 (404)
.|.++.+.|+-.-..= +....++-=+-||||+|-|||-|-..--+-+..+ .|+
T Consensus 8 GQ~~vk~~L~l~I~AA--------------------k~R~e~LDH~LL~GPPGLGKTTLA~IiA~Emg~~--l~i----- 60 (305)
T TIGR00635 8 GQEKVKEQLQLFIEAA--------------------KMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--LKI----- 60 (305)
T ss_pred CCHHHHHHHHHHHHHH--------------------HHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC--CEE-----
T ss_conf 8288999999999999--------------------8248973416631756874678999999983893--267-----
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 99999999997131122466557807899999961387999842320471358889999999985496899817868677
Q gi|254781047|r 104 MKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPEN 183 (404)
Q Consensus 104 M~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~d 183 (404)
..+..-.+.+|-+..+. -.++.+|||+||-|= |++..+.+
T Consensus 61 -------------TsGP~L~kPgDlaaiLt--~L~~gDVLFIDEIHR--------L~p~~EE~----------------- 100 (305)
T TIGR00635 61 -------------TSGPALEKPGDLAAILT--NLEEGDVLFIDEIHR--------LSPAIEEL----------------- 100 (305)
T ss_pred -------------EECCCCCCHHHHHHHHH--HCCCCCEEECCHHHH--------CCHHHHHH-----------------
T ss_conf -------------40675547578999997--056896310125650--------48334531-----------------
Q ss_pred HHCCCCCHHHHHHHHHHHHHCCEEEECCC----CCHHHHCCC-----------CCCCEEEEC----------CCHHHHHH
Q ss_conf 52387405668989999985050898047----311221123-----------678302203----------53022689
Q gi|254781047|r 184 LYKDEINRNVLVSFIELLEKKLEIISLDS----GQDYRRKEQ-----------SILPIYMTP----------LNSYNRVL 238 (404)
Q Consensus 184 LY~~GLqR~~FlPfI~~lk~~~~V~~l~~----~~DYR~~~~-----------~~~~~y~~p----------~~~~~~~~ 238 (404)
||.= |+-+.||- |-==|...+ +..+.--.| .+=.+.++
T Consensus 101 LYpA-----------------MEDF~lDi~IG~Gp~Ar~v~ldLpPFTLvGATTR~G~lt~PLrdRFG~~~rl~fY~~~E 163 (305)
T TIGR00635 101 LYPA-----------------MEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTPEE 163 (305)
T ss_pred CCCC-----------------CCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHH
T ss_conf 0530-----------------01217877871289852576068694420000347741031334544745402689878
Q ss_pred HHHHHHHHCCC--CCCCCCCEEEECCEEEEECCCCCCCCCC--CHHHHHHHHCC
Q ss_conf 99999986044--4467763276368089961220211110--19998521024
Q gi|254781047|r 239 MDKLWAHITKG--KKSLSLNISTEGGYEIHVPFFCSRVSRF--SFFDLCDRPLS 288 (404)
Q Consensus 239 l~~~f~~l~~~--~~~~~~~i~v~~gR~i~v~~~~~~va~f--~F~eLC~~~lg 288 (404)
+.++..+-++- -+-.+.....+..|+=-.|+.++..++- ||.+..++..=
T Consensus 164 L~~Iv~R~A~~L~~ei~~~~a~~IArrSRGTPRIAnRLLRRVRDfA~V~~~~~I 217 (305)
T TIGR00635 164 LAEIVSRSAGLLNIEIEQEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQGVI 217 (305)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999987533441430077899999875478637888776766448887267873
No 94
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.04 E-value=0.13 Score=30.23 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=27.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 48877898999999999999999861354333225664310246666668864998888877289999
Q gi|254781047|r 16 DKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLM 83 (404)
Q Consensus 16 ~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LM 83 (404)
.+...+.+.|..++..+... .+.+.++++.|.|||..+
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~------------------------------~~~~~i~~~tGsGKT~~~ 41 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSG------------------------------LRDVILAAPTGSGKTLAA 41 (201)
T ss_pred CCCCCCCHHHHHHHHHHHCC------------------------------CCCEEEECCCCCCHHHHH
T ss_conf 37999998899999999838------------------------------998899899996099999
No 95
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=96.02 E-value=0.005 Score=39.27 Aligned_cols=138 Identities=17% Similarity=0.272 Sum_probs=80.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 6688649988888772899999999857811---1468889999999999999971311224665578078999999613
Q gi|254781047|r 63 YCSMQGIYLHGDVGQGKSMLMNLFFALVPIE---KKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALE 139 (404)
Q Consensus 63 ~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~---~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~ 139 (404)
-.||+|+.|||++|+|||+|-...-...... -+---=|..|.-+-... |..+-.+--+.
T Consensus 572 ~~PP~Gvll~GPPGtGktllakava~es~anfi~v~GPe~lskWvGese~~------------------ir~if~~arq~ 633 (980)
T TIGR01243 572 IRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKA------------------IREIFRKARQA 633 (980)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHCHHHHH------------------HHHHHHHHHHC
T ss_conf 889973487468986168888877401456467740731223440324799------------------99999986412
Q ss_pred -CCEEEEEEEEEC-----------CCHHHHHHHHHHHHHH----HCCCEEEEECCCC----HHHHHCCCCCHHHHHHH--
Q ss_conf -879998423204-----------7135888999999998----5496899817868----67752387405668989--
Q gi|254781047|r 140 -SRVLCFDEFMIT-----------NIADAIILSRLFAALF----SHGCIIVMTSNFI----PENLYKDEINRNVLVSF-- 197 (404)
Q Consensus 140 -~~lLCfDEF~V~-----------DiaDAmil~rl~~~lf----~~gv~lV~TSN~~----P~dLY~~GLqR~~FlPf-- 197 (404)
--+++|||..-- .++| -|+..|+..+= ..++++|+..||| |.-|-++-+.|--+.|.
T Consensus 634 aP~~~f~deidaiaP~rG~~~~~~~vtd-~~~nqll~e~dG~~~~~~vvvi~atnrPdi~dPallrPGr~dr~i~vP~Pd 712 (980)
T TIGR01243 634 APAIIFFDEIDAIAPARGASLDEKGVTD-RIVNQLLTELDGLEELSDVVVIAATNRPDILDPALLRPGRLDRLILVPAPD 712 (980)
T ss_pred CCEEEEEECHHHHCCCCCCCCCCCCHHH-HHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf 8737873021110541244210010268-999999986404434366589861588742361004887412168605985
Q ss_pred ----HHHHHHCCEEEECCCCCHHHHC
Q ss_conf ----9999850508980473112211
Q gi|254781047|r 198 ----IELLEKKLEIISLDSGQDYRRK 219 (404)
Q Consensus 198 ----I~~lk~~~~V~~l~~~~DYR~~ 219 (404)
.++.|-|..-++|..+.|.+..
T Consensus 713 ~~ar~~ifk~ht~~~~l~~dv~l~~l 738 (980)
T TIGR01243 713 EEARLEIFKIHTRSMPLAEDVDLEEL 738 (980)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf 56767676553111353013438999
No 96
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=95.99 E-value=0.0065 Score=38.54 Aligned_cols=123 Identities=18% Similarity=0.208 Sum_probs=70.9
Q ss_pred HCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 13543332256643102466666688649988888772899999999857811146888999999999999997131122
Q gi|254781047|r 41 KQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEF 120 (404)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~ 120 (404)
+-+-+...+|.++. -.||+|+.|||++|+|||+|-...-+.+...- --+-=-+.|. ++-|.
T Consensus 223 elP~~hPe~f~~lG--------iePPkG~ll~GPPGtGktllaka~ane~~a~f-~~inGPeims-------ky~Ge--- 283 (980)
T TIGR01243 223 ELPLKHPELFEKLG--------IEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF-IAINGPEIMS-------KYYGE--- 283 (980)
T ss_pred HCCCCCHHHHHHCC--------CCCCCCEEEECCCCCCHHHHHHHHHHHCCCEE-EEECCCHHHH-------HHCCC---
T ss_conf 43575647898618--------89987358755898617899999875305517-8850603443-------31363---
Q ss_pred CCCCCCCHHHHHHHHHHCCCC-EEEEEEEEECCCH--------HHHH---HHHHHHHHHHCCCEEEEECCCCHHHHHC
Q ss_conf 466557807899999961387-9998423204713--------5888---9999999985496899817868677523
Q gi|254781047|r 121 GEILESDPIPLVASSIALESR-VLCFDEFMITNIA--------DAII---LSRLFAALFSHGCIIVMTSNFIPENLYK 186 (404)
Q Consensus 121 ~~~~~~dpl~~va~~l~~~~~-lLCfDEF~V~Dia--------DAmi---l~rl~~~lf~~gv~lV~TSN~~P~dLY~ 186 (404)
.+.-|..+-++--.+.. ++++||..---+- .--+ |-.|+..|-.+|-++|+-..--|+-|-+
T Consensus 284 ----~e~~lr~if~eaeenaP~iifideidaiaPkr~e~~Geve~r~v~qlltlmdGlk~rG~v~viGatnrP~a~dP 357 (980)
T TIGR01243 284 ----SEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGKVIVIGATNRPDALDP 357 (980)
T ss_pred ----CHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCH
T ss_conf ----07899999986530587078741211007641000016889999999999740024872899814688500262
No 97
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.98 E-value=0.14 Score=30.15 Aligned_cols=15 Identities=7% Similarity=0.067 Sum_probs=5.8
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 302268999999986
Q gi|254781047|r 232 NSYNRVLMDKLWAHI 246 (404)
Q Consensus 232 ~~~~~~~l~~~f~~l 246 (404)
+...+..+-++...+
T Consensus 376 SGsGKSTL~~LL~rl 390 (593)
T PRK10790 376 TGSGKSTLASLLMGY 390 (593)
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 988689999999985
No 98
>PHA02244 ATPase-like protein
Probab=95.89 E-value=0.073 Score=31.90 Aligned_cols=86 Identities=15% Similarity=0.243 Sum_probs=51.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf 86499888887728999999998578111468889999999999999971311224665578078999999613879998
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCF 145 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCf 145 (404)
.--+||||+.|.|||.+..-.-+.+..+ +|| |.-|-++. ++.|-..-....++.|+- +-.++.-|+.+
T Consensus 119 nipV~L~G~AGsGKt~~A~qIA~aLdl~----FYf---~gAI~~ef-~L~Gf~DAnG~yh~T~f~----kaFk~GGLfLl 186 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLD----FYF---MNAIMDEF-ELKGFIDANGKFHETPFY----EAFKKGGLFFI 186 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCC----CEE---CHHHHHHH-HCCCEECCCCCEECCHHH----HHHHCCCEEEE
T ss_conf 9856997588886348999999985888----244---13230134-301256489967263899----99861887997
Q ss_pred EEEEECCCHHHHHHHHHHHHH
Q ss_conf 423204713588899999999
Q gi|254781047|r 146 DEFMITNIADAIILSRLFAAL 166 (404)
Q Consensus 146 DEF~V~DiaDAmil~rl~~~l 166 (404)
||.-- +++-.|..|=.+|
T Consensus 187 DEiDA---SnP~aL~~lNaAL 204 (383)
T PHA02244 187 DEIDA---SIPEALIIINSAI 204 (383)
T ss_pred EHHCC---CCHHHHHHHHHHH
T ss_conf 32004---4879999998998
No 99
>KOG0728 consensus
Probab=95.88 E-value=0.023 Score=35.10 Aligned_cols=139 Identities=20% Similarity=0.296 Sum_probs=69.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf 68864998888877289999999985781114688899999999999999713112246655780789999996138799
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL 143 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL 143 (404)
+.|+|+.|||++|+|||+|--+-++...+.- -|+.=.+..+ ..+ +.. +.----|-..|.+-+ -.+|
T Consensus 179 aQPKGvlLygppgtGktLlaraVahht~c~f-irvsgselvq---k~i----geg----srmvrelfvmareha--psii 244 (404)
T KOG0728 179 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTF-IRVSGSELVQ---KYI----GEG----SRMVRELFVMAREHA--PSII 244 (404)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCEEE-EEECHHHHHH---HHH----HHH----HHHHHHHHHHHHHCC--CCEE
T ss_conf 8876048846999756299999875414079-9964499999---985----013----899999999987508--8267
Q ss_pred EEEEEEECCCH----------HHHHHHHHHHHHH-------HCCCEEEEECCCC----HHHHHCCCCCHHH-HHH-----
Q ss_conf 98423204713----------5888999999998-------5496899817868----6775238740566-898-----
Q gi|254781047|r 144 CFDEFMITNIA----------DAIILSRLFAALF-------SHGCIIVMTSNFI----PENLYKDEINRNV-LVS----- 196 (404)
Q Consensus 144 CfDEF~V~Dia----------DAmil~rl~~~lf-------~~gv~lV~TSN~~----P~dLY~~GLqR~~-FlP----- 196 (404)
+.||.. -|+ |.-.-...++-|- .+++.+|+..||- |.-|-++.+.|.- |-|
T Consensus 245 fmdeid--sigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~a 322 (404)
T KOG0728 245 FMDEID--SIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEA 322 (404)
T ss_pred EEHHCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCHHH
T ss_conf 500001--212343457898638999999999974024000366269984164222468663877545556489987788
Q ss_pred HHHHHHHCCEEEECCCCCHHHH
Q ss_conf 9999985050898047311221
Q gi|254781047|r 197 FIELLEKKLEIISLDSGQDYRR 218 (404)
Q Consensus 197 fI~~lk~~~~V~~l~~~~DYR~ 218 (404)
-.++|+-+..-.+|--|.|.|.
T Consensus 323 r~~ilkihsrkmnl~rgi~l~k 344 (404)
T KOG0728 323 RLDILKIHSRKMNLTRGINLRK 344 (404)
T ss_pred HHHHHHHHHHHHHHHCCCCHHH
T ss_conf 8789988555301330667899
No 100
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.85 E-value=0.16 Score=29.71 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 499888887728999999998578
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
=+=|-|+-|.|||-|+.+.....+
T Consensus 33 i~~liG~NGaGKSTLl~~i~G~~~ 56 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGDPR 56 (237)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999987999759999999967998
No 101
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.80 E-value=0.048 Score=33.02 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 86499888887728999999998578
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
..=+-|-|+.|+|||-|++++....+
T Consensus 30 G~~v~ivG~sGsGKSTLl~ll~gl~~ 55 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999999999859999999967254
No 102
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.77 E-value=0.11 Score=30.81 Aligned_cols=19 Identities=16% Similarity=0.224 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHCCCCCEEE
Q ss_conf 9899999998228982899
Q gi|254781047|r 319 KRFIMLIDVFYEHKIGLII 337 (404)
Q Consensus 319 rRFI~LID~lYd~kv~Li~ 337 (404)
|.=|.+.=++|-+.--|++
T Consensus 485 rQRialARall~~~~iliL 503 (581)
T PRK11176 485 RQRIAIARALLRDSPILIL 503 (581)
T ss_pred HHHHHHHHHHHCCCCEEEE
T ss_conf 9999999999679998998
No 103
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.73 E-value=0.013 Score=36.66 Aligned_cols=108 Identities=14% Similarity=0.146 Sum_probs=61.9
Q ss_pred CEEEEECCCCCCHHHHHHHHH-----HHCCC--CHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH--
Q ss_conf 649988888772899999999-----85781--114-68889999999999999971311224665578078999999--
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFF-----ALVPI--EKK-CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI-- 136 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy-----~~l~~--~~K-~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l-- 136 (404)
+-+-|.|+=|.|||-+|...- ..... +.. ....+- ..++-.........++ ..--+..++..+
T Consensus 22 ~~~iItGpN~sGKSt~Lr~i~l~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~lSg----g~~~~~~l~~~l~~ 94 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIV---AAVSAELIFTRLQLSG----GEKELSALALILAL 94 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCC---HHHEEEEEECCCCCCC----CHHHHHHHHHHHHH
T ss_conf 6899989987757999999999999863267752555427764---0230576641200054----29999999999985
Q ss_pred --HCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf --613879998423-204713588899999999854968998178686
Q gi|254781047|r 137 --ALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIP 181 (404)
Q Consensus 137 --~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P 181 (404)
..+..++++||+ .=+|..|+..+...+..+..+|..+|.|+-.+.
T Consensus 95 ~~~~~~~lillDE~~~Gtd~~~~~~l~~~i~~~~~~~~~~i~tTH~~e 142 (162)
T cd03227 95 ASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE 142 (162)
T ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 424898489963655799988999999999999976998999797399
No 104
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.70 E-value=0.011 Score=37.13 Aligned_cols=113 Identities=20% Similarity=0.197 Sum_probs=60.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH--HCCCCEE
Q ss_conf 86499888887728999999998578111468889999999999999971311224665578078999999--6138799
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI--ALESRVL 143 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l--~~~~~lL 143 (404)
.-..-+||++|+|||-|-.+.-..... +|..|=. +-+.....|. .++. |++. .....||
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~------~f~~~sA-v~~gvkdlr~-----------i~e~-a~~~~~~gr~tiL 108 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNA------AFEALSA-VTSGVKDLRE-----------IIEE-ARKNRLLGRRTIL 108 (436)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCC------CEEEECC-CCCCHHHHHH-----------HHHH-HHHHHHCCCCEEE
T ss_conf 860577789998888999999876177------6699515-2346799999-----------9999-9998725883499
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf 984232047135888999999998549689981786867752387405668989999985050898047
Q gi|254781047|r 144 CFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS 212 (404)
Q Consensus 144 CfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~ 212 (404)
++||.|=-|=+--.. |+..+=+.-|++|.++---|.== | -..|..+|.|+.|..
T Consensus 109 flDEIHRfnK~QQD~---lLp~vE~G~iilIGATTENPsF~----l--------n~ALlSR~~vf~lk~ 162 (436)
T COG2256 109 FLDEIHRFNKAQQDA---LLPHVENGTIILIGATTENPSFE----L--------NPALLSRARVFELKP 162 (436)
T ss_pred EEEHHHHCCHHHHHH---HHHHHCCCEEEEEECCCCCCCEE----E--------CHHHHHHHHEEEEEC
T ss_conf 872253337445655---10332488689996267898714----0--------388861104156516
No 105
>PRK05642 DNA replication initiation factor; Validated
Probab=95.68 E-value=0.076 Score=31.78 Aligned_cols=70 Identities=16% Similarity=0.367 Sum_probs=53.6
Q ss_pred HHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9999853788998189878724638999899999998228982899807897880134676531348998988745242
Q gi|254781047|r 292 FVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLYEMFS 370 (404)
Q Consensus 292 Yi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~EMqS 370 (404)
.+.=-+.++.++|+||..+.... +...-|-+++..+++.+.+|+++|..+|.++- +...+=.|||.=+.+
T Consensus 91 ~~~~l~~~d~l~IDDi~~i~g~~-~~e~~lF~l~N~~~~~~~~llits~~~P~~l~--------~~l~DL~SRl~~~~~ 160 (234)
T PRK05642 91 LLDNLEQYELVCIDDLDVIAGKA-DWEEALFHLFNRLRDSGRRLLLAASKSPRELP--------VKLPDLKSRLTLALV 160 (234)
T ss_pred HHHHHHHCCEEEEECHHHHCCCH-HHHHHHHHHHHHHHHCCCEEEEECCCCHHHHC--------CCHHHHHHHHHCCCE
T ss_conf 98624227989893645546885-99999999999999839959995787955523--------001679999957812
No 106
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.68 E-value=0.08 Score=31.64 Aligned_cols=81 Identities=20% Similarity=0.303 Sum_probs=61.3
Q ss_pred HCCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 02468999998537889981898787246389998999999982289828998078978801346765313489989887
Q gi|254781047|r 286 PLSANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRL 365 (404)
Q Consensus 286 ~lg~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL 365 (404)
.....++..--+..+.++|+||.-+.. ..-..--|-+.++.||+++..++++++.+|.+| .+.+ +|-.||+
T Consensus 196 ~~~~~~Fr~~yr~~DvLliDDiqfl~g-k~~tqeeff~~fn~l~~~~kqiv~tsd~~P~~l---~~l~-----~rL~SRf 266 (447)
T PRK00149 196 NNAMEEFKEKYRSVDVLLIDDIQFLAG-KEKTQEEFFHTFNALHENNKQIVITSDRPPKEL---EGLE-----DRLRSRF 266 (447)
T ss_pred CCCHHHHHHHHHCCCEEEECHHHHHHC-CHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHC---CCCC-----HHHHHHH
T ss_conf 186999999997288543214888605-577999999999999984996899578896765---6511-----7788676
Q ss_pred H-----HHCCHHHHH
Q ss_conf 4-----524278897
Q gi|254781047|r 366 Y-----EMFSAQYIG 375 (404)
Q Consensus 366 ~-----EMqS~~yl~ 375 (404)
. +++.+++=.
T Consensus 267 ~~Gl~~~i~~Pd~e~ 281 (447)
T PRK00149 267 EWGLTVDIEPPDLET 281 (447)
T ss_pred HCCEEEECCCCCHHH
T ss_conf 376265105999999
No 107
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.66 E-value=0.13 Score=30.31 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 864998888877289999999985781
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
-.=+.|-|+-|+|||-|+.+.-.-++.
T Consensus 26 Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 52 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGLSPP 52 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 959999999999999999999667788
No 108
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.65 E-value=0.081 Score=31.61 Aligned_cols=112 Identities=18% Similarity=0.205 Sum_probs=66.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC---CC-----------H--HHHHHH------HHHHHHHHHHHHH---HHCCCCCCC
Q ss_conf 499888887728999999998578---11-----------1--468889------9999999999999---713112246
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP---IE-----------K--KCRLHF------YEFMKDVHSRIIM---YRKKIEFGE 122 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~---~~-----------~--K~R~HF------h~FM~~ih~~l~~---~~~~~~~~~ 122 (404)
=+-|-|+-|.|||-||++...... .+ . ++++-| |.....|.+.+.- .++ .+.+
T Consensus 35 ~~~llGpnGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~igyv~q~~~~~~~~tv~e~l~~~~~l~~-LS~g- 112 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRG-LSVE- 112 (192)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEECCHHHHHHEEEEECCHHCCCCCHHHHHHHHHHHHHC-CCHH-
T ss_conf 99999999998899999983798788317899987827667756227999411330734549999986677733-7976-
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 6557807899999961387999842320-4713588899999999854968998178686775
Q gi|254781047|r 123 ILESDPIPLVASSIALESRVLCFDEFMI-TNIADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404)
Q Consensus 123 ~~~~dpl~~va~~l~~~~~lLCfDEF~V-~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404)
.---..+|..++.+-++|++||=-- -|+.....+-+++..+-+.|.++|+|+-.+-+++
T Consensus 113 ---qrqrv~iA~aL~~~P~lllLDEPt~gLD~~~~~~i~~~l~~l~~~g~tiii~th~~~~~i 172 (192)
T cd03232 113 ---QRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASI 172 (192)
T ss_pred ---HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
T ss_conf ---765899999984499889984887688989999999999999969999999983637999
No 109
>KOG2028 consensus
Probab=95.65 E-value=0.016 Score=36.13 Aligned_cols=117 Identities=18% Similarity=0.229 Sum_probs=55.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH--HHHHCCCC
Q ss_conf 6886499888887728999999998578111468889999999999999971311224665578078999--99961387
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVA--SSIALESR 141 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va--~~l~~~~~ 141 (404)
..+..+-+||++|+|||-|-.+.-.+..... .-| .++-. ...+ .. -..|.++..- +.+.+.-.
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S---yrf----velSA----t~a~---t~-dvR~ife~aq~~~~l~krkT 224 (554)
T KOG2028 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS---YRF----VELSA----TNAK---TN-DVRDIFEQAQNEKSLTKRKT 224 (554)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCCCC---EEE----EEEEC----CCCC---HH-HHHHHHHHHHHHHHHHCCEE
T ss_conf 8887058866998765889999986057774---279----99741----4566---18-89999999887876524406
Q ss_pred EEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEE-ECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf 9998423204713588899999999854968998-178686775238740566898999998505089804
Q gi|254781047|r 142 VLCFDEFMITNIADAIILSRLFAALFSHGCIIVM-TSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD 211 (404)
Q Consensus 142 lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~-TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~ 211 (404)
+|++||.|-.+-+--= +|--..+.|.++.+ ..--.|. .+ -+..|-.+|.|+-|+
T Consensus 225 ilFiDEiHRFNksQQD----~fLP~VE~G~I~lIGATTENPS-------Fq-----ln~aLlSRC~VfvLe 279 (554)
T KOG2028 225 ILFIDEIHRFNKSQQD----TFLPHVENGDITLIGATTENPS-------FQ-----LNAALLSRCRVFVLE 279 (554)
T ss_pred EEEEHHHHHHHHHHHH----CCCCEECCCCEEEEECCCCCCC-------CC-----HHHHHHHCCCEEEEC
T ss_conf 9873776553232110----0342130670699853668976-------01-----127787316066733
No 110
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.64 E-value=0.056 Score=32.63 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 64998888877289999999985781
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
+=+=|-|+-|+|||-|+.+...-.+.
T Consensus 41 e~vaIvG~sGsGKSTL~~ll~gl~~p 66 (226)
T cd03248 41 EVTALVGPSGSGKSTVVALLENFYQP 66 (226)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 99999999998499999999645467
No 111
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.62 E-value=0.2 Score=29.13 Aligned_cols=114 Identities=17% Similarity=0.048 Sum_probs=61.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC-HH-----------------------HHHHHHHHH-----HHHHHHHHHHH---
Q ss_conf 49988888772899999999857811-14-----------------------688899999-----99999999971---
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIE-KK-----------------------CRLHFYEFM-----KDVHSRIIMYR--- 115 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~-~K-----------------------~R~HFh~FM-----~~ih~~l~~~~--- 115 (404)
=+=|-|+=|.|||-|+.+....++.. .+ --+.|.... .++.+...++-
T Consensus 52 ivgllG~NGaGKSTLlk~I~Gl~~P~~G~I~~~G~i~~~~~~~~l~~~lt~~eni~~~~~~~g~~~~~~~~~~~~~le~~ 131 (264)
T PRK13546 52 VIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFS 131 (264)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEEEECCCCCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999899861999999996798888747999988748850356574430001588899872424999999999999851
Q ss_pred ------CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf ------311224665578078999999613879998423-204713588899999999854968998178686
Q gi|254781047|r 116 ------KKIEFGEILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIP 181 (404)
Q Consensus 116 ------~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P 181 (404)
.+.-..-++..---..+|..++.+-++|.+||- -.-|+..+--+-.++..+-++|.++|.+|....
T Consensus 132 ~l~~~~~~~~~~LSgGqkqrl~lA~al~~~P~iLiLDEPts~LD~~~~~~i~~~i~~l~~~g~TiilvSH~l~ 204 (264)
T PRK13546 132 ELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG 204 (264)
T ss_pred CCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 2055651755347999999999999995699999995987548999999999999999968989999848789
No 112
>KOG0726 consensus
Probab=95.60 E-value=0.01 Score=37.26 Aligned_cols=71 Identities=24% Similarity=0.276 Sum_probs=40.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHHCCCCE
Q ss_conf 688649988888772899999999857811146888999999999999997-1311224665578078999999613879
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMY-RKKIEFGEILESDPIPLVASSIALESRV 142 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~-~~~~~~~~~~~~dpl~~va~~l~~~~~l 142 (404)
.||+|+-|||.+|+|||+|-.+--++... .|..-+-++|-+- -+. + +.----|-.||.+-+- .+
T Consensus 217 kpPKGVIlyG~PGTGKTLLAKAVANqTSA---------TFlRvvGseLiQkylGd---G-pklvRqlF~vA~e~ap--SI 281 (440)
T KOG0726 217 KPPKGVILYGEPGTGKTLLAKAVANQTSA---------TFLRVVGSELIQKYLGD---G-PKLVRELFRVAEEHAP--SI 281 (440)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCH---------HHHHHHHHHHHHHHHCC---C-HHHHHHHHHHHHHCCC--CE
T ss_conf 99970588679997536888877245521---------24556508999987365---5-1999999988875298--26
Q ss_pred EEEEEEE
Q ss_conf 9984232
Q gi|254781047|r 143 LCFDEFM 149 (404)
Q Consensus 143 LCfDEF~ 149 (404)
.|+||..
T Consensus 282 vFiDEId 288 (440)
T KOG0726 282 VFIDEID 288 (440)
T ss_pred EEEEHHH
T ss_conf 9864001
No 113
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.58 E-value=0.062 Score=32.35 Aligned_cols=126 Identities=17% Similarity=0.145 Sum_probs=67.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHH--HHHHHH-HHHHHHHHHC-CCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 6886499888887728999999998578111468889--999999-9999999713-11224665578078999999613
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHF--YEFMKD-VHSRIIMYRK-KIEFGEILESDPIPLVASSIALE 139 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HF--h~FM~~-ih~~l~~~~~-~~~~~~~~~~dpl~~va~~l~~~ 139 (404)
.+..-|-|+|+.|+||+.+-...++..+-+.+.=+.. .....+ +-++|+...+ ...+.... ...+- +.++
T Consensus 159 ~~~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfi~vnC~~~~~~~~e~eLFG~~~gaf~ga~~~-~~g~~----e~a~- 232 (469)
T PRK10923 159 RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTI-RQGRF----EQAD- 232 (469)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCC-CCCCH----HHCC-
T ss_conf 88997899898982699999999974887799957876788997789999708766787886424-58736----6438-
Q ss_pred CCEEEEEEEEECCCHHHHHHHHHHHH-H---------HHCCCEEEEECCCCHHHHHCCCCCHHHHH
Q ss_conf 87999842320471358889999999-9---------85496899817868677523874056689
Q gi|254781047|r 140 SRVLCFDEFMITNIADAIILSRLFAA-L---------FSHGCIIVMTSNFIPENLYKDEINRNVLV 195 (404)
Q Consensus 140 ~~lLCfDEF~V~DiaDAmil~rl~~~-l---------f~~gv~lV~TSN~~P~dLY~~GLqR~~Fl 195 (404)
.--|++||..--...----|-++++. - ..-.+.+|+|||..+.++-+.|..|+.+.
T Consensus 233 ~GTLfLdeI~~L~~~~Q~kLl~~L~~~~~~~~g~~~~~~~d~RiIaat~~~L~~~v~~g~Fr~dLy 298 (469)
T PRK10923 233 GGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 (469)
T ss_pred CCCEEHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCEEEECCEEEEECCCCHHHHHHHCCHHHHHH
T ss_conf 992656636648999999999998559378579985122143799707879999866081779999
No 114
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.57 E-value=0.21 Score=29.02 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 649988888772899999999857811
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIE 93 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~ 93 (404)
.=+-|-|+=|+|||-|+.+.-..++..
T Consensus 28 ~i~~l~G~NGaGKSTLlkli~Gl~~p~ 54 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLLNPE 54 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 799998899987999999997785889
No 115
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.53 E-value=0.074 Score=31.83 Aligned_cols=52 Identities=15% Similarity=0.326 Sum_probs=31.8
Q ss_pred HHHHHHHHHHCCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 0789999996138799984232-0471358889999999985496899817868
Q gi|254781047|r 128 PIPLVASSIALESRVLCFDEFM-ITNIADAIILSRLFAALFSHGCIIVMTSNFI 180 (404)
Q Consensus 128 pl~~va~~l~~~~~lLCfDEF~-V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~ 180 (404)
-...+|..+..+.+||.+||-- =-|+..+..+.+.+..++. +.++|+.|.+.
T Consensus 145 Qrl~lARaLl~~p~IllLDEpTs~LD~~te~~i~~~l~~~~~-~~TvI~itHrl 197 (275)
T cd03289 145 QLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFA-DCTVILSEHRI 197 (275)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCH
T ss_conf 999999999519998999797668999999999999999729-99899994388
No 116
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.45 E-value=0.2 Score=29.16 Aligned_cols=112 Identities=22% Similarity=0.251 Sum_probs=56.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHH-----------------------HHHHHH--------HHHHHHHHH
Q ss_conf 6499888887728999999998578111468889-----------------------999999--------999999971
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHF-----------------------YEFMKD--------VHSRIIMYR 115 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HF-----------------------h~FM~~--------ih~~l~~~~ 115 (404)
.=+=|-|+=|.|||-|+.+..--++... -.+.+ -.|+.. +.+++.++-
T Consensus 49 eivgilG~NGaGKSTLl~~i~Gl~~p~~-G~I~i~G~~~~~~~~~~~~~p~ltv~enl~~~~~~~g~~~~~~~~~~~~~l 127 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGIYPPDS-GTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEII 127 (224)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCC-CEEEECCEECCCCCCCEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 8999997999819999999975877787-769999898430157420399882999999999982965899999999999
Q ss_pred CCCCCCC---------CCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 3112246---------65578078999999613879998423-2047135888999999998549689981786
Q gi|254781047|r 116 KKIEFGE---------ILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNF 179 (404)
Q Consensus 116 ~~~~~~~---------~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~ 179 (404)
......+ ++.---=..+|..++.+-++|++||= ---|+...--+-+++..+.+.|.++|.+|-.
T Consensus 128 ~~~~L~~~~~~~~~~LSgG~kqRl~iA~al~~~P~illLDEPt~gLD~~~~~~i~~~i~~l~~~g~tiii~sH~ 201 (224)
T cd03220 128 EFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHD 201 (224)
T ss_pred HHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 86367556538665469999999999999966999999918866569999999999999998589999998898
No 117
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.44 E-value=0.036 Score=33.85 Aligned_cols=129 Identities=17% Similarity=0.194 Sum_probs=70.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 64998888877289999999985781114688899999999999999713112246655780789999996138799984
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFD 146 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfD 146 (404)
.=|-+.|++|+|||=|-...-+++.-+- -|+-. -.++++ .+.||-+..=-+.-+--|-.--++--..-.|+.+|
T Consensus 350 ~IlclvGpPGvGKTSl~~sIA~al~r~f-~risl----GGv~De-aeirGHrrTYvgampGrii~~l~~a~~~nPv~llD 423 (784)
T PRK10787 350 PILCLVGPPGVGKTSLGQSIAKATGRKY-VRMAL----GGVRDE-AEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLD 423 (784)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEEC----CCCCCH-HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEH
T ss_conf 7799646998772469999999858986-99806----887888-88256433434436838999999748988566500
Q ss_pred EE------EECCCHHHHHHHHHHH---------HH----HH-CCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCE
Q ss_conf 23------2047135888999999---------99----85-49689981786867752387405668989999985050
Q gi|254781047|r 147 EF------MITNIADAIILSRLFA---------AL----FS-HGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLE 206 (404)
Q Consensus 147 EF------~V~DiaDAmil~rl~~---------~l----f~-~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~ 206 (404)
|. +--|+|.||+ .++. ++ |+ .+|..|+|.|.. + -+. -|.++++
T Consensus 424 EiDK~~~~~~Gdp~salL--EvLDpeQN~~F~Dhyl~~~~DlS~v~Fi~TaN~~-~--ip~------------pLlDRmE 486 (784)
T PRK10787 424 EIDKMSSDMRGDPASALL--EVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-N--IPA------------PLLDRME 486 (784)
T ss_pred HHHHHCCCCCCCHHHHHH--HHCCHHHCCCCCCCEEECCCCHHHEEEEEECCCC-C--CCH------------HHHHHEE
T ss_conf 355522455899889999--8459765564000322046452225899732767-7--876------------7763121
Q ss_pred EEECCCCCHHHH
Q ss_conf 898047311221
Q gi|254781047|r 207 IISLDSGQDYRR 218 (404)
Q Consensus 207 V~~l~~~~DYR~ 218 (404)
|+++.|-+..-+
T Consensus 487 ~i~~~gYt~~eK 498 (784)
T PRK10787 487 VIRLSGYTEDEK 498 (784)
T ss_pred EEEECCCCHHHH
T ss_conf 554116767889
No 118
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.42 E-value=0.031 Score=34.28 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=41.2
Q ss_pred HHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf 78999999613879998423-204713588899999999854968998178686
Q gi|254781047|r 129 IPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIP 181 (404)
Q Consensus 129 l~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P 181 (404)
--.+|..++.+.+|+++||= -=-|+...-.+.+++..+-+.|.++|.||+...
T Consensus 131 rv~iAral~~~p~llllDEPt~~LD~~~~~~i~~li~~~~~~g~~ili~sH~~~ 184 (195)
T PRK13541 131 VVALARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES 184 (195)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 999999997099999997876559999999999999999839999999837989
No 119
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.41 E-value=0.061 Score=32.37 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 86499888887728999999998578
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
-.=+-|-|+.|.|||-|+++.....+
T Consensus 29 G~~iaIvG~sGsGKSTLl~ll~gl~~ 54 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVSLLERFYD 54 (238)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999999999989999999823861
No 120
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.40 E-value=0.023 Score=35.05 Aligned_cols=122 Identities=13% Similarity=0.130 Sum_probs=64.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHH--HHHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf 649988888772899999999857811146--888999999-99999999713112246655780789999996138799
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKC--RLHFYEFMK-DVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL 143 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~--R~HFh~FM~-~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL 143 (404)
.-|.|.|..|+||+.+--..++..+-..+. .+....+-. .+...|.-.....-.+.. ....-.+ + ..+.--|
T Consensus 30 ~pVLI~GE~GtGK~~~Ar~IH~~S~r~~~pfi~v~C~~l~~~~~e~~LFG~~~g~~~~~~--~~~~g~l--e-~a~gGTL 104 (325)
T PRK11608 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQ--KRHPGRF--E-RADGGTL 104 (325)
T ss_pred CCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCC--CCCCCHH--H-CCCCCEE
T ss_conf 998988989837999999999658867999778877989977889987277556767753--2468734--3-5689869
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHH-------------HCCCEEEEECCCCHHHHHCCCCCHHHHHH
Q ss_conf 984232047135888999999998-------------54968998178686775238740566898
Q gi|254781047|r 144 CFDEFMITNIADAIILSRLFAALF-------------SHGCIIVMTSNFIPENLYKDEINRNVLVS 196 (404)
Q Consensus 144 CfDEF~V~DiaDAmil~rl~~~lf-------------~~gv~lV~TSN~~P~dLY~~GLqR~~FlP 196 (404)
++||..--+.. +=.+|+..|- .-.+.+|+|||..+.++-..|..|+.+.-
T Consensus 105 ~L~eI~~l~~~---~Q~~Ll~~l~~~~~~r~g~~~~~~~~~RiIa~t~~~l~~lv~~g~fr~dLy~ 167 (325)
T PRK11608 105 FLDELATAPML---VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD 167 (325)
T ss_pred EEECHHHCCHH---HHHHHHHHHHCCCEEECCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHH
T ss_conf 97374547999---9999999986490885799876656468871332208999983956799985
No 121
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.38 E-value=0.042 Score=33.38 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=16.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 86499888887728999999998578
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
.--|.|.|..|+||+++--...+..+
T Consensus 348 ~~pVLI~GE~GtGKe~lAraIH~~S~ 373 (639)
T PRK11388 348 SFPILLCGEEGVGKALLAQAIHNESE 373 (639)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99689889898109999999995577
No 122
>KOG0741 consensus
Probab=95.37 E-value=0.009 Score=37.66 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=18.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHH
Q ss_conf 6886499888887728999999
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNL 85 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdl 85 (404)
...||+.|||++|+|||++---
T Consensus 254 ~HVKGiLLyGPPGTGKTLiARq 275 (744)
T KOG0741 254 KHVKGILLYGPPGTGKTLIARQ 275 (744)
T ss_pred CCEEEEEEECCCCCCHHHHHHH
T ss_conf 1123578877999870189999
No 123
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=95.36 E-value=0.071 Score=31.96 Aligned_cols=123 Identities=14% Similarity=0.199 Sum_probs=69.9
Q ss_pred EEE-ECCCCCCHHHHHHHHHHHCCCCHH--------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH----
Q ss_conf 998-888877289999999985781114--------6888999999999999997131122466557807899999----
Q gi|254781047|r 69 IYL-HGDVGQGKSMLMNLFFALVPIEKK--------CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASS---- 135 (404)
Q Consensus 69 lYL-~G~VG~GKT~LMdlFy~~l~~~~K--------~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~---- 135 (404)
-|| +|+-|+|||-+--.|-.++.+... ... -..+....|..+.+...... . .-|-+..+.+.
T Consensus 39 AyLF~GP~GtGKts~ArifAkaLnC~~~~~~~pC~~C~~-C~~i~~g~~~DviEidaas~---~-gVd~IRei~~~~~~~ 113 (557)
T PRK07270 39 AYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNNCDI-CRDITNGSLEDVIEIDAASN---N-GVDEIRDIRDKSTYA 113 (557)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHCCCCCCEEEECCCCC---C-CHHHHHHHHHHHCCC
T ss_conf 442108998689999999999957999899998887779-99987589997487347776---7-889999999984238
Q ss_pred -HHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf -9613879998423204713588899999999854968998178686775238740566898999998505089804
Q gi|254781047|r 136 -IALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD 211 (404)
Q Consensus 136 -l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~ 211 (404)
....++|.-|||.+--..+-+=-|-+.++.-=.+-+++.+|++ |+.| +..|..+|..++..
T Consensus 114 P~~~~yKV~IIDEah~Ls~~A~NALLKtLEEPP~~~vFIL~Tte--p~kI-------------l~TI~SRCQrf~F~ 175 (557)
T PRK07270 114 PSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTE--LHKI-------------PATILSRVQRFEFK 175 (557)
T ss_pred CCCCCEEEEEECCHHHCCHHHHHHHHHHHHCCCCCEEEEEEECC--HHHC-------------CHHHHHHHHHCCCC
T ss_conf 77788389997144534999999899985289987699998499--4759-------------28887430001088
No 124
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.36 E-value=0.058 Score=32.53 Aligned_cols=25 Identities=28% Similarity=0.583 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 6499888887728999999998578
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
.=+=|-|+.|+|||-|+.++..-++
T Consensus 28 e~v~ivG~sGsGKSTLl~ll~gl~~ 52 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 9999999999989999999743854
No 125
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.35 E-value=0.17 Score=29.49 Aligned_cols=117 Identities=16% Similarity=0.250 Sum_probs=60.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC----------------HHHHH--HHHHHH--------------H--------HH
Q ss_conf 49988888772899999999857811----------------14688--899999--------------9--------99
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIE----------------KKCRL--HFYEFM--------------K--------DV 107 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~----------------~K~R~--HFh~FM--------------~--------~i 107 (404)
=+-|.|+=|+|||-|+.+..--.+.. ++|++ =|.++- . ++
T Consensus 28 ~~~i~GpSG~GKSTlLr~iaGl~~p~~G~I~~~g~~i~~~~~~~R~ig~VfQ~~~LfP~ltV~eNI~~~l~~~~~~~~e~ 107 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEI 107 (213)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHH
T ss_conf 99999999880999999997699998639999999999999767887899458764654709999998999859998999
Q ss_pred HHHHHHHHCCCCCCCCCCCCHH---------HHHHHHHHCCCCEEEEEE-EEECCCHHHHHHHHHHHHHHHC-CCEEEEE
Q ss_conf 9999997131122466557807---------899999961387999842-3204713588899999999854-9689981
Q gi|254781047|r 108 HSRIIMYRKKIEFGEILESDPI---------PLVASSIALESRVLCFDE-FMITNIADAIILSRLFAALFSH-GCIIVMT 176 (404)
Q Consensus 108 h~~l~~~~~~~~~~~~~~~dpl---------~~va~~l~~~~~lLCfDE-F~V~DiaDAmil~rl~~~lf~~-gv~lV~T 176 (404)
.++..++-...+........|- -.+|..++.+-++|.+|| |---|..-..-+..++..+.+. |+++|..
T Consensus 108 ~~~v~~~l~~~gl~~~~~~~P~~LSGGqkQRVaiARAl~~~P~lLLlDEP~saLD~~~r~~i~~~l~~~~~~~~~T~i~v 187 (213)
T cd03301 108 DERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYV 187 (213)
T ss_pred HHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 99999999875992465099556999999999999998759998998388764298999999999999999749989999
Q ss_pred CCCCHHHH
Q ss_conf 78686775
Q gi|254781047|r 177 SNFIPENL 184 (404)
Q Consensus 177 SN~~P~dL 184 (404)
+--.-+-+
T Consensus 188 THd~~ea~ 195 (213)
T cd03301 188 THDQVEAM 195 (213)
T ss_pred CCCHHHHH
T ss_conf 99989999
No 126
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.34 E-value=0.073 Score=31.88 Aligned_cols=115 Identities=16% Similarity=0.149 Sum_probs=63.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH--HHHH-HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 8864998888877289999999985781114688899--9999-999999997131122466557807899999961387
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY--EFMK-DVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR 141 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh--~FM~-~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~ 141 (404)
+..-|-|+|..|+||+++-...++..+-+.+-=+..+ ..-. .+-++|+-.... .+..+- + ..+.-
T Consensus 226 ~d~pVLI~GEsGTGKellAraIH~~S~R~~~pFv~vnC~alp~~l~eseLFG~a~~-------~~~G~f----e-~A~gG 293 (513)
T PRK10820 226 LSAPLLITGDTGTGKDLFAYACHLASPRAKKPYLALNCASIPEDAVESELFGHAPE-------GKKGFF----E-QANGG 293 (513)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCC-------CCCCCE----E-ECCCC
T ss_conf 89988998989824999999999668878998268889989967899986387666-------889755----7-85898
Q ss_pred EEEEEEEEECCCHHHHHHHHHHHHHHHC-------------CCEEEEECCCCHHHHHCCCCCHHHH
Q ss_conf 9998423204713588899999999854-------------9689981786867752387405668
Q gi|254781047|r 142 VLCFDEFMITNIADAIILSRLFAALFSH-------------GCIIVMTSNFIPENLYKDEINRNVL 194 (404)
Q Consensus 142 lLCfDEF~V~DiaDAmil~rl~~~lf~~-------------gv~lV~TSN~~P~dLY~~GLqR~~F 194 (404)
-|++||..--... +=.+|+..|-+. .+.+|+|||..+.+|-..|..|+.+
T Consensus 294 TLfLdEI~~l~~~---~Q~kLLr~Lq~~~~~rvG~~~~~~~dvRiIaaT~~dL~~lv~~g~FReDL 356 (513)
T PRK10820 294 SVLLDEIGEMSPR---MQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGLFREDL 356 (513)
T ss_pred EEEEECHHHCCHH---HHHHHHHHHHCCEEEECCCCCEEEEEEEEEECCCHHHHHHHHCCCCCHHH
T ss_conf 8999783659999---99999999868979965998535677899962653099998729850889
No 127
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.30 E-value=0.054 Score=32.69 Aligned_cols=108 Identities=19% Similarity=0.190 Sum_probs=51.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHHHHHHH-----------HHCCCCCCCCCCCCHHHH
Q ss_conf 4998888877289999999985781114688899-----999999999999-----------713112246655780789
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY-----EFMKDVHSRIIM-----------YRKKIEFGEILESDPIPL 131 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh-----~FM~~ih~~l~~-----------~~~~~~~~~~~~~dpl~~ 131 (404)
=+=|-|+.|+|||-|+.+...-++... -++-+. +.-.++++.+-. .+.+.+..-++..----.
T Consensus 30 ~~aivG~sGsGKSTLl~~l~G~~~p~~-G~i~i~g~~i~~~~~~~~~~i~~v~Q~~~lf~~ti~~nlg~~LSgGqkqRv~ 108 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKPQQ-GEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLA 108 (178)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCC-CEEEECCEEHHHHHHHHHHHEEEECCCCCCCCCHHHHHCCCCCCHHHHHHHH
T ss_conf 999999998759999999986176678-8699999988997899997208983556364541998628888999999999
Q ss_pred HHHHHHCCCCEEEEEEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 9999961387999842320-47135888999999998549689981
Q gi|254781047|r 132 VASSIALESRVLCFDEFMI-TNIADAIILSRLFAALFSHGCIIVMT 176 (404)
Q Consensus 132 va~~l~~~~~lLCfDEF~V-~DiaDAmil~rl~~~lf~~gv~lV~T 176 (404)
+|..++.+.++|.+||--. -|......+-+++..+.+...++++|
T Consensus 109 iAral~~~p~ililDEpts~LD~~t~~~i~~~l~~~~~~~Tvi~it 154 (178)
T cd03247 109 LARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWIT 154 (178)
T ss_pred HHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9999964979767228655699899999999999983999999980
No 128
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.29 E-value=0.071 Score=31.94 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 6499888887728999999998578
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
.=+=|-|+.|+|||-|+.+...-.+
T Consensus 29 ~~vaivG~sGsGKSTll~ll~gl~~ 53 (237)
T cd03252 29 EVVGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 9999999999859999999967765
No 129
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.28 E-value=0.087 Score=31.39 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=21.0
Q ss_pred HHHHH-HHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 68999-99853788998189878724638999899999998228982899
Q gi|254781047|r 289 ANDFV-EIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLII 337 (404)
Q Consensus 289 ~~DYi-~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~ 337 (404)
..|++ .+.+.++|.+=++=-.|+.- .|.=|.+-=++|-+---|++
T Consensus 450 ~~~~I~~lp~G~dT~vge~G~~LSGG----QrQRialARAll~~p~IliL 495 (585)
T PRK13657 450 ALDFIERKEDGYDTVVGERGRQLSGG----ERQRLAIARALLKDPPILIL 495 (585)
T ss_pred CHHHHHHCCCCCCCCCCCCCCCCCHH----HHHHHHHHHHHHCCCCEEEE
T ss_conf 27999717566668013788868999----99999999999469898998
No 130
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=95.27 E-value=0.26 Score=28.40 Aligned_cols=139 Identities=16% Similarity=0.132 Sum_probs=68.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHH-----HH---------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 8864998888877289999999985781114-----68---------889999999999999971311224665578078
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKK-----CR---------LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIP 130 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K-----~R---------~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~ 130 (404)
-+.++-|+|+-|-||||+..-|...-|...- .. ---.+|...|-..|..--+. .....-..
T Consensus 60 Rmp~lLlvGdsnnGKT~Iv~rF~~~hp~~~d~~~~~~PVl~vq~P~~p~~~~lY~~IL~~l~aP~~~-----~~~~~~~~ 134 (302)
T pfam05621 60 RMPNLLLVGPTNNGKSMIVEKFRRAHPAGSDADQEHIPVLVVQMPSEPSVIRFYVALLAAMGAPLRP-----RPRLPEME 134 (302)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCC-----CCCHHHHH
T ss_conf 8875588707988789999999996799878666702189997699988689999999983787788-----87789999
Q ss_pred HHHHHHHC--CCCEEEEEEEEECCCHHHHHHHHHHHHHHH----CCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999961--387999842320471358889999999985----496899817868677523874056689899999850
Q gi|254781047|r 131 LVASSIAL--ESRVLCFDEFMITNIADAIILSRLFAALFS----HGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKK 204 (404)
Q Consensus 131 ~va~~l~~--~~~lLCfDEF~V~DiaDAmil~rl~~~lf~----~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~ 204 (404)
..+..+.+ +.++|.|||||--=.+.+---..++..|-. ..|.+|+---..-- +.+-.=..+..+
T Consensus 135 ~~~~~ll~~~~vrmLIIDEiHnlL~Gs~~~qr~~ln~LK~L~Nel~IpiV~vGt~eA~----------~ai~tD~QlasR 204 (302)
T pfam05621 135 QLALALLRKVGVRMLVIDELHNVLAGNSVNRREFLNLLRFLGNELRIPLVGVGTRDAY----------LAIRSDDQLENR 204 (302)
T ss_pred HHHHHHHHHCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHH----------HHHHCCHHHHHH
T ss_conf 9999999974987899854365604868899999999999863658786995319999----------997068888850
Q ss_pred CEEEECC---CCCHHHH
Q ss_conf 5089804---7311221
Q gi|254781047|r 205 LEIISLD---SGQDYRR 218 (404)
Q Consensus 205 ~~V~~l~---~~~DYR~ 218 (404)
++.+.|. -+.||+.
T Consensus 205 F~~~~Lp~W~~d~ef~~ 221 (302)
T pfam05621 205 FEPMLLPPWEANDDCCS 221 (302)
T ss_pred CCCCCCCCCCCCCHHHH
T ss_conf 58611688889808999
No 131
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.24 E-value=0.23 Score=28.72 Aligned_cols=111 Identities=22% Similarity=0.183 Sum_probs=69.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCH----------------HHHHHHHHHHHHHHHHHHH-----HHCCCCCCCCCC
Q ss_conf 6499888887728999999998578111----------------4688899999999999999-----713112246655
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEK----------------KCRLHFYEFMKDVHSRIIM-----YRKKIEFGEILE 125 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~----------------K~R~HFh~FM~~ih~~l~~-----~~~~~~~~~~~~ 125 (404)
.=+-|-|+-|+|||-||.+.....+... +.+-. +..+.+-|.. +.++....-++.
T Consensus 26 e~~~liG~nGsGKTTLl~~i~G~~~~~~G~I~~~g~~i~~~~~~~~~~~----i~~v~Q~l~~~~l~~~~~~~~~~LSGG 101 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARK----IAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC----CCHHHHHHHHCCCHHHHCCCHHHCCHH
T ss_conf 7999998999889999999957989987289999999896999999554----649999999859977864991037999
Q ss_pred CCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHH-CCCEEEEECCCCH
Q ss_conf 78078999999613879998423-20471358889999999985-4968998178686
Q gi|254781047|r 126 SDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFS-HGCIIVMTSNFIP 181 (404)
Q Consensus 126 ~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~-~gv~lV~TSN~~P 181 (404)
.----.+|..++.+-++|.+||- -=-|+..+.-+-.++..+.+ +|.++|.+|-..+
T Consensus 102 qkQrv~iA~aL~~~P~ililDEPts~LD~~~~~~i~~~i~~l~~~~~~tii~itHdl~ 159 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 9999999999986896478858754479999999999999999846989999907989
No 132
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.23 E-value=0.11 Score=30.76 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 864998888877289999999985781
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
-.=+-|-|+.|+|||-|+.+...-++.
T Consensus 29 Ge~vaivG~sGsGKSTLl~ll~gl~~p 55 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRFYDP 55 (229)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 999999999998099999999668667
No 133
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.22 E-value=0.24 Score=28.55 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=34.8
Q ss_pred HHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 999999613879998423-204713588899999999854968998178
Q gi|254781047|r 131 LVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSN 178 (404)
Q Consensus 131 ~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN 178 (404)
.+|..|+.+.++|.+||= ---|+.....+.+++..|-+.|.++|.+|-
T Consensus 149 aIAraL~~~P~iLlLDEPTs~LD~~~~~~v~~li~~L~~~G~Tvi~vtH 197 (255)
T cd03236 149 AIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEH 197 (255)
T ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 9999736899999997987658999999999999999978999999907
No 134
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.20 E-value=0.12 Score=30.52 Aligned_cols=74 Identities=19% Similarity=0.174 Sum_probs=41.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf 68864998888877289999999985781114688899999999999999713112246655780789999996138799
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL 143 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL 143 (404)
.+.--+.+||++|.|||-|-...-..+...- +...+..-.+..|-...+ .-.++.+||
T Consensus 50 e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~--------------------k~tsGp~leK~gDlaaiL--t~Le~~DVL 107 (332)
T COG2255 50 EALDHVLLFGPPGLGKTTLAHIIANELGVNL--------------------KITSGPALEKPGDLAAIL--TNLEEGDVL 107 (332)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCE--------------------EECCCCCCCCHHHHHHHH--HCCCCCCEE
T ss_conf 8767478647998768889999999856773--------------------763662015726599998--639867767
Q ss_pred EEEEEEECCCHHHHHH
Q ss_conf 9842320471358889
Q gi|254781047|r 144 CFDEFMITNIADAIIL 159 (404)
Q Consensus 144 CfDEF~V~DiaDAmil 159 (404)
|+||.|--..+--=+|
T Consensus 108 FIDEIHrl~~~vEE~L 123 (332)
T COG2255 108 FIDEIHRLSPAVEEVL 123 (332)
T ss_pred EEEHHHHCCHHHHHHH
T ss_conf 7725531474289896
No 135
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.18 E-value=0.019 Score=35.63 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=64.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCH-H--------HHHHHHHHHH---HHHHHHHHHHCCCCCC-CCCCCCHHHHH
Q ss_conf 86499888887728999999998578111-4--------6888999999---9999999971311224-66557807899
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEK-K--------CRLHFYEFMK---DVHSRIIMYRKKIEFG-EILESDPIPLV 132 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~-K--------~R~HFh~FM~---~ih~~l~~~~~~~~~~-~~~~~dpl~~v 132 (404)
-.-+=|-|+.|+|||-|+++.....+... + ..+...++-. .+-+.-+-+.+..... -++..----.+
T Consensus 28 G~~vaIvG~sGsGKSTLl~ll~gl~~p~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~eNiLSGGQkQRval 107 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGL 107 (173)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCEECCCCHHHHCCCHHHHHHHHH
T ss_conf 99999999999809999999966666799989999999332899898420899908883677758997676999999999
Q ss_pred HHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 9999613879998423-20471358889999999985496899817868
Q gi|254781047|r 133 ASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFI 180 (404)
Q Consensus 133 a~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~ 180 (404)
|..+..+.++|.+||- ---|......+-+.+..+-.+|.++|+.+.+.
T Consensus 108 ARal~~~p~ililDEpts~LD~~~e~~i~~~l~~l~~~~~Tvi~vtH~~ 156 (173)
T cd03246 108 ARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156 (173)
T ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf 9998279999999687668998999999999997864898999984799
No 136
>KOG2004 consensus
Probab=95.17 E-value=0.28 Score=28.21 Aligned_cols=122 Identities=21% Similarity=0.307 Sum_probs=74.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH----HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 886499888887728999999998578111468889999----9999999999713112246655780789999996138
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEF----MKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALES 140 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~F----M~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~ 140 (404)
.-+=+-++|++|+|||=+-...-.++. +| |+.| |.++- ++.-.|.+--+.- +--|-.--+..--+-
T Consensus 437 qGkIlCf~GPPGVGKTSI~kSIA~ALn--Rk----FfRfSvGG~tDvA-eIkGHRRTYVGAM---PGkiIq~LK~v~t~N 506 (906)
T KOG2004 437 QGKILCFVGPPGVGKTSIAKSIARALN--RK----FFRFSVGGMTDVA-EIKGHRRTYVGAM---PGKIIQCLKKVKTEN 506 (906)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHC--CC----EEEEECCCCCCHH-HHCCCCEEEECCC---CHHHHHHHHHHCCCC
T ss_conf 883799868998773218999999848--74----6998536634277-6425421100148---848999998617788
Q ss_pred CEEEEEEE------EECCCHHHHHH-------HHHHHHHHH-----CCCEEEEECCCC---HHHHHCCCCCHHHHHHHHH
Q ss_conf 79998423------20471358889-------999999985-----496899817868---6775238740566898999
Q gi|254781047|r 141 RVLCFDEF------MITNIADAIIL-------SRLFAALFS-----HGCIIVMTSNFI---PENLYKDEINRNVLVSFIE 199 (404)
Q Consensus 141 ~lLCfDEF------~V~DiaDAmil-------~rl~~~lf~-----~gv~lV~TSN~~---P~dLY~~GLqR~~FlPfI~ 199 (404)
.|+.+||. +--|+|.|++= +.++.++.+ ..|..|+|.|.- |.
T Consensus 507 PliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~----------------- 569 (906)
T KOG2004 507 PLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPP----------------- 569 (906)
T ss_pred CEEEEEHHHHHCCCCCCCHHHHHHHHCCHHHCCCHHHHCCCCCCCHHHEEEEEECCCCCCCCH-----------------
T ss_conf 658853223417887798689998743965355345420266421110688985364456985-----------------
Q ss_pred HHHHCCEEEECCCC
Q ss_conf 99850508980473
Q gi|254781047|r 200 LLEKKLEIISLDSG 213 (404)
Q Consensus 200 ~lk~~~~V~~l~~~ 213 (404)
-|..+++|++|.|-
T Consensus 570 pLlDRMEvIelsGY 583 (906)
T KOG2004 570 PLLDRMEVIELSGY 583 (906)
T ss_pred HHHHHHHEEECCCC
T ss_conf 66412232203672
No 137
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.14 E-value=0.095 Score=31.16 Aligned_cols=20 Identities=20% Similarity=0.129 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHCCCCCEEE
Q ss_conf 99899999998228982899
Q gi|254781047|r 318 IKRFIMLIDVFYEHKIGLII 337 (404)
Q Consensus 318 arRFI~LID~lYd~kv~Li~ 337 (404)
.|.=|.+.=++|-+.--|++
T Consensus 456 QrQRialARAll~~p~iliL 475 (569)
T PRK10789 456 QKQRISIARALLLNAEILIL 475 (569)
T ss_pred HHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999999549998998
No 138
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=95.11 E-value=0.081 Score=31.60 Aligned_cols=149 Identities=21% Similarity=0.265 Sum_probs=86.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH-------------------------HHHHHHHHHC
Q ss_conf 666886499888887728999999998578111468889999999-------------------------9999999713
Q gi|254781047|r 62 KYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKD-------------------------VHSRIIMYRK 116 (404)
Q Consensus 62 ~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~-------------------------ih~~l~~~~~ 116 (404)
+.+-||=+-||||+|+|||----+..+-... ...--|-.+ ||+=+.+=.
T Consensus 172 aSPfPQHiiLYGPPGVGKTTaARl~LEe~K~-----~~~tPF~~DA~FvEVDGtTLRWDPREvTNPLLGSVHDPIYQGa- 245 (616)
T TIGR02903 172 ASPFPQHIILYGPPGVGKTTAARLALEEAKK-----LKNTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGA- 245 (616)
T ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHHCCC-----CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-
T ss_conf 1888660785573388478999998762136-----8744761137857515762667741014776776257655676-
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCC--EEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHH
Q ss_conf 1122466557807899999961387--99984232047135888999999998549689981786867752387405668
Q gi|254781047|r 117 KIEFGEILESDPIPLVASSIALESR--VLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVL 194 (404)
Q Consensus 117 ~~~~~~~~~~dpl~~va~~l~~~~~--lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~F 194 (404)
++...+++.+.|= ..|..+++ |||+||.== =|.|+=.+||+-|=++.| -.-+|=+-|||= |
T Consensus 246 ~RDLAE~GvPEPk----~GLVT~AHGGvLFIDEIGE---LD~lLQnKLLKVLEDKrV-~F~SsYYDpdD~--N------- 308 (616)
T TIGR02903 246 RRDLAETGVPEPK----LGLVTDAHGGVLFIDEIGE---LDPLLQNKLLKVLEDKRV-EFSSSYYDPDDE--N------- 308 (616)
T ss_pred CHHHCCCCCCCCC----CCCCCCCCCCEEEEECHHH---HHHHHHHHHHHHHCCCEE-EEEECCCCCCCC--C-------
T ss_conf 4011047879898----9871004775676502112---227876324443226436-653212487537--8-------
Q ss_pred HH-HHHHHHHCCEEEECCCCCHHHHCCCCC--------------CCEEEECCCHHHHHHH
Q ss_conf 98-999998505089804731122112367--------------8302203530226899
Q gi|254781047|r 195 VS-FIELLEKKLEIISLDSGQDYRRKEQSI--------------LPIYMTPLNSYNRVLM 239 (404)
Q Consensus 195 lP-fI~~lk~~~~V~~l~~~~DYR~~~~~~--------------~~~y~~p~~~~~~~~l 239 (404)
+| .|+.| ++=+.+-||=+...+- +.+||.|+++..-..+
T Consensus 309 vPkYIK~l------Fe~GAPADFvLIGATTr~P~eINpALRSRCaEvfFePL~p~dI~~I 362 (616)
T TIGR02903 309 VPKYIKKL------FEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIKEI 362 (616)
T ss_pred CCHHHHHH------HCCCCCCCEEEECCCCCCHHHCCHHHHCCCCEEECCCCCHHHHHHH
T ss_conf 65588885------2268882568726615882440512330143132179887899999
No 139
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.10 E-value=0.12 Score=30.58 Aligned_cols=108 Identities=20% Similarity=0.177 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 89999999999999998613543332256643102466666688649988888772899999999857811146888999
Q gi|254781047|r 23 PAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYE 102 (404)
Q Consensus 23 ~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~ 102 (404)
-.|.++.+.|.-....=.. ...+.--+-+||++|.|||-|-...-+-+...-
T Consensus 28 iGQ~~i~~~L~v~i~Aak~--------------------r~e~ldH~Ll~GPPGlGKTTLA~iiA~E~~~~~-------- 79 (328)
T PRK00080 28 IGQEKVKENLKIFIEAAKK--------------------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNI-------- 79 (328)
T ss_pred CCHHHHHHHHHHHHHHHHH--------------------CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCC--------
T ss_conf 5959999999999999996--------------------499988057658899889999999999868881--------
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 9999999999971311224665578078999999613879998423204713588899999999854968998
Q gi|254781047|r 103 FMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVM 175 (404)
Q Consensus 103 FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~ 175 (404)
+. ..+..-.+..|-.... .-.++.+|||+||.|=-..+=-=+ |..++=+..+-++.
T Consensus 80 ---------~~---tsGP~lek~~DL~~iL--t~l~~~dvLFIDEIHRl~~~vEE~---LY~AMEDf~iDi~i 135 (328)
T PRK00080 80 ---------RI---TSGPALEKAGDLAALL--TNLEEGDVLFIDEIHRLSPVVEEI---LYPAMEDFRLDIMI 135 (328)
T ss_pred ---------EE---CCCCCCCCHHHHHHHH--HHCCCCCEEEEHHHHHCCHHHHHH---HHHHHHHCEEEEEE
T ss_conf ---------56---2450016747899999--608878767650653248889988---57987752345786
No 140
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.08 E-value=0.088 Score=31.37 Aligned_cols=120 Identities=17% Similarity=0.126 Sum_probs=67.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 68864998888877289999999985781114688899-----9999999999997-13112246655780789999996
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY-----EFMKDVHSRIIMY-RKKIEFGEILESDPIPLVASSIA 137 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh-----~FM~~ih~~l~~~-~~~~~~~~~~~~dpl~~va~~l~ 137 (404)
++.--|.|+|..|+||.++--..++..+-+.+-=++-| +=+ +.++|+-. ++.-.+. ....... + +.+
T Consensus 207 ~sd~pVLI~GEtGTGKelvAr~IH~~S~R~~~Pfv~vNCaalpe~l--~EseLFGh~kGaFtGA-~~~r~G~--f--e~A 279 (510)
T PRK05022 207 ASDLNVLITGETGVGKELVARAIHQASPRAVKPLVYLNCAALPESL--AESELFGHVKGAFTGA-ISNRSGK--F--ELA 279 (510)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHH--HHHHHCCCCCCCCCCC-CCCCCCC--E--EEC
T ss_conf 8999889889898139999999996688789985788899998567--8998659777886886-5567881--0--177
Q ss_pred CCCCEEEEEEEEECCCHHHHHHHHHHHHHHH-------------CCCEEEEECCCCHHHHHCCCCCHHHH
Q ss_conf 1387999842320471358889999999985-------------49689981786867752387405668
Q gi|254781047|r 138 LESRVLCFDEFMITNIADAIILSRLFAALFS-------------HGCIIVMTSNFIPENLYKDEINRNVL 194 (404)
Q Consensus 138 ~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~-------------~gv~lV~TSN~~P~dLY~~GLqR~~F 194 (404)
.+ --|++||..= ..-++ =.+|+..|-+ -.+.+|++||+.+.++-..|..|+.+
T Consensus 280 ~g-GTLfLDEI~~--Lpl~~-Q~KLLrvLq~g~iqrvG~~~~~~vdvRIIAATnrdL~~~V~~G~FR~DL 345 (510)
T PRK05022 280 DG-GTLFLDEIGE--LPLAL-QAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVLAGRFRADL 345 (510)
T ss_pred CC-CEEEEECHHH--CCHHH-HHHHHHHHHCCEEEECCCCCEEEEEEEEEEECCCCHHHHHHCCCHHHHH
T ss_conf 89-8798757454--99999-9999999847958855899466666899960783599998839638999
No 141
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.07 E-value=0.26 Score=28.37 Aligned_cols=89 Identities=21% Similarity=0.214 Sum_probs=62.8
Q ss_pred CCCCCHHHHHHH--------HCCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHH
Q ss_conf 111019998521--------024689999985378899818987872463899989999999822898289980789788
Q gi|254781047|r 274 VSRFSFFDLCDR--------PLSANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIED 345 (404)
Q Consensus 274 va~f~F~eLC~~--------~lg~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~ 345 (404)
|+.++..+|... ..+..+++......+.++|+|+-.-.. +.-..--+-.+||.-|.++.+.++|+..++++
T Consensus 214 Viy~ta~~L~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDLG~E~~-t~~~~~~Lf~iIN~R~~~~k~tIITTNl~~~e 292 (330)
T PRK06835 214 VIYRTSDELIENLREIRFNNDNDAPELEDLLINCDLLIIDDLGTESI-TEFSKTELFNLINKRLLMNKKMIISTNLSLEE 292 (330)
T ss_pred EEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEEECCCCCCC-CHHHHHHHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 99962999999999975457644899999996189899721034558-86899999999999986799979988999899
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 0134676531348998988745242
Q gi|254781047|r 346 LFPYKLRKGAFEIQRTVSRLYEMFS 370 (404)
Q Consensus 346 L~~~~~~~~~F~f~Rt~SRL~EMqS 370 (404)
|-. . --+|+.|||.+|-+
T Consensus 293 L~~------~-y~eRi~SRi~~~~~ 310 (330)
T PRK06835 293 LLK------T-YSERIASRLLGNFT 310 (330)
T ss_pred HHH------H-HHHHHHHHHHHCCE
T ss_conf 999------8-74899999981854
No 142
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.04 E-value=0.083 Score=31.53 Aligned_cols=95 Identities=17% Similarity=0.118 Sum_probs=54.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCHH-------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---HHHHHHHHHH-
Q ss_conf 998888877289999999985781114-------68889999999999999971311224665578---0789999996-
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIEKK-------CRLHFYEFMKDVHSRIIMYRKKIEFGEILESD---PIPLVASSIA- 137 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~~K-------~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~d---pl~~va~~l~- 137 (404)
+-|.|+||+|||.|.-.+.+.++...- ..+...+|+..|-+.+..- . ...+ ... .|...-.++.
T Consensus 46 ~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~~~l~~~~ll~~i~~~lg~~---~-~~~~-~~~~~~~l~~~L~~~~~ 120 (269)
T TIGR03015 46 ILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLE---T-EGRD-KAALLRELEDFLIEQFA 120 (269)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC---C-CCCC-HHHHHHHHHHHHHHHHH
T ss_conf 99972998988999999998459345489997699999999999999985989---8-8989-99999999999999996
Q ss_pred -CCCCEEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf -1387999842320471358889999999985
Q gi|254781047|r 138 -LESRVLCFDEFMITNIADAIILSRLFAALFS 168 (404)
Q Consensus 138 -~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~ 168 (404)
...-||-+||=|--+..-.--|..|...-.+
T Consensus 121 ~g~~~vliIDEAq~L~~~~Le~Lr~L~n~e~~ 152 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTD 152 (269)
T ss_pred CCCCEEEEEECHHHCCHHHHHHHHHHHCCCCC
T ss_conf 69946999724221999999999999701358
No 143
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.03 E-value=0.28 Score=28.20 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=37.5
Q ss_pred HHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf 999999613879998423-204713588899999999854968998178686
Q gi|254781047|r 131 LVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIP 181 (404)
Q Consensus 131 ~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P 181 (404)
.+|..++.+-++|++||= -=-|+.-...+..++..+-+.|..++.||-...
T Consensus 138 ~la~al~~~p~lllLDEPt~gLDp~~~~~i~~~i~~~~~~g~til~ssH~l~ 189 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME 189 (210)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 9999995799899992886679999999999999999968989999888489
No 144
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.02 E-value=0.13 Score=30.23 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 864998888877289999999985781
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
-+=+-|-|+.|+|||-|+.+.-...+.
T Consensus 28 Ge~i~IvG~sGsGKSTLl~ll~gl~~p 54 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPRFYDV 54 (234)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 999999989998299999999667667
No 145
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.01 E-value=0.075 Score=31.79 Aligned_cols=100 Identities=16% Similarity=0.126 Sum_probs=61.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf 86499888887728999999998578111468889999999999999971311224665578078999999613879998
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCF 145 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCf 145 (404)
-+=+-|.|+-|+|||-|+++....++... -.+-+.. ..-...+.++ + +..----.+|..++.+.++|.+
T Consensus 26 ge~~~l~G~NGsGKTTl~~~l~G~~~~~~-G~i~~~~--~~~i~y~~QL----S----gGqkqr~~la~al~~~p~iliL 94 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDE-GIVTWGS--TVKIGYFEQL----S----GGEKMRLALAKLLLENPNLLLL 94 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCC-EEEEECC--CCEEEEEHHC----C----HHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99999998999849999999848988985-0999999--6089987007----9----9999999999997259989999
Q ss_pred EEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 423-204713588899999999854968998178
Q gi|254781047|r 146 DEF-MITNIADAIILSRLFAALFSHGCIIVMTSN 178 (404)
Q Consensus 146 DEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN 178 (404)
||- ---|+.....+.+++..+ .+.+++.|.|
T Consensus 95 DEPt~~LD~~~~~~i~~~l~~~--~~tii~vsHd 126 (144)
T cd03221 95 DEPTNHLDLESIEALEEALKEY--PGTVILVSHD 126 (144)
T ss_pred ECCCCCCCHHHHHHHHHHHHHC--CCEEEEEECC
T ss_conf 5775558999999999999970--9999999679
No 146
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.00 E-value=0.076 Score=31.76 Aligned_cols=93 Identities=17% Similarity=0.179 Sum_probs=56.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf 49988888772899999999857811146888999999999999997131122466557807899999961387999842
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDE 147 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDE 147 (404)
=+.|+|+=++|||.+++++-...+.. .--+-|-+. ..-..++ .|.+...+.....+...|++||
T Consensus 39 i~~i~GpR~~GKTtllk~l~~~~~~~-~iy~~~~d~-~~~~~~l--------------~d~~~~~~~~~~~~~~yifLDE 102 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE-IIYINFDDL-RLDRIEL--------------LDLLRAYIELKEREKSYIFLDE 102 (398)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC-EEEEECCCC-CCCHHHH--------------HHHHHHHHHHHCCCCCEEEEEE
T ss_conf 49998886477899999999747773-599973620-0013567--------------7899999985222574599983
Q ss_pred EEECCCHHHHHHHHHHHHHHHCCC--EEEEECCCCH
Q ss_conf 320471358889999999985496--8998178686
Q gi|254781047|r 148 FMITNIADAIILSRLFAALFSHGC--IIVMTSNFIP 181 (404)
Q Consensus 148 F~V~DiaDAmil~rl~~~lf~~gv--~lV~TSN~~P 181 (404)
.|-..= .-+.+..|.+.|- +++++||..-
T Consensus 103 Iq~v~~-----W~~~lk~l~d~~~~~v~itgsss~l 133 (398)
T COG1373 103 IQNVPD-----WERALKYLYDRGNLDVLITGSSSSL 133 (398)
T ss_pred ECCCHH-----HHHHHHHHHCCCCCEEEEECCCHHH
T ss_conf 337610-----8999999975677509998371675
No 147
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.96 E-value=0.28 Score=28.18 Aligned_cols=75 Identities=13% Similarity=0.128 Sum_probs=58.1
Q ss_pred HCCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 02468999998537889981898787246389998999999982289828998078978801346765313489989887
Q gi|254781047|r 286 PLSANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRL 365 (404)
Q Consensus 286 ~lg~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL 365 (404)
..+..+++.-..+++.++|+++-.-. ....+.--+-.+||.=|....+.++++..++++|-.+ -=+|+.|||
T Consensus 147 ~~~e~~~l~~l~~~dLLIiDdlG~e~-~t~~~~~~lf~iId~Ry~~~kp~IitTNl~~~eL~~~-------lGeR~~dRl 218 (242)
T PRK07952 147 ETSEEQLLNDLSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKL-------LGERVMDRM 218 (242)
T ss_pred CCCHHHHHHHHHCCCEEEEECCCCCC-CCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH-------HHHHHHHHH
T ss_conf 75699999986318989873014665-8888999999999999971698899817999999999-------708999999
Q ss_pred HHH
Q ss_conf 452
Q gi|254781047|r 366 YEM 368 (404)
Q Consensus 366 ~EM 368 (404)
.+.
T Consensus 219 ~~~ 221 (242)
T PRK07952 219 RLG 221 (242)
T ss_pred HHC
T ss_conf 727
No 148
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.94 E-value=0.12 Score=30.56 Aligned_cols=80 Identities=20% Similarity=0.241 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 24689999985378899818987872463899989999999822898289980789788013467653134899898874
Q gi|254781047|r 287 LSANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLY 366 (404)
Q Consensus 287 lg~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~ 366 (404)
-...+|..--+..++++|+||.-+.. ..-...-|-+.++.||+++..++++++.+|.+| .+.+ +|-+||+.
T Consensus 191 ~~~~~Fr~~yr~~DvLLIDDIQfl~g-K~~tqeEff~tfN~L~~~~KQIVitsDr~P~el---~~l~-----~RL~SRf~ 261 (455)
T PRK12422 191 GEMQRFRSFYRNVDALFIEDIEVFSG-KGATQEEFFHTFNSLHTEGKLIVISSSYAPGDL---KAME-----ERLISRFE 261 (455)
T ss_pred CCHHHHHHHHHCCCEEEEEHHHHHHC-CHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH---HHHH-----HHHHHHHH
T ss_conf 88999999996388776314788728-488999999999999985996999689895765---1268-----99998863
Q ss_pred -----HHCCHHHHH
Q ss_conf -----524278897
Q gi|254781047|r 367 -----EMFSAQYIG 375 (404)
Q Consensus 367 -----EMqS~~yl~ 375 (404)
+++.+++=.
T Consensus 262 ~GL~v~I~~Pd~et 275 (455)
T PRK12422 262 WGIAIPIHPLTREG 275 (455)
T ss_pred CCEEECCCCCCHHH
T ss_conf 76132168999899
No 149
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.86 E-value=0.034 Score=34.03 Aligned_cols=108 Identities=18% Similarity=0.234 Sum_probs=60.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHH-------------HHHHHHHHHHHHHH----HCCCCCCCCCCCCHH
Q ss_conf 6499888887728999999998578111468889-------------99999999999997----131122466557807
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHF-------------YEFMKDVHSRIIMY----RKKIEFGEILESDPI 129 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HF-------------h~FM~~ih~~l~~~----~~~~~~~~~~~~dpl 129 (404)
.=+-|-|+-|+|||-|+.++..-++... -++-+ ..-+..|.+.-+-+ +.+. -++..---
T Consensus 29 e~i~ivG~sGsGKSTLl~ll~gl~~p~~-G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~tv~eNi---LSgGq~Qr 104 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDPTS-GEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI---LSGGQRQR 104 (171)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCC-CEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHC---CCHHHHHH
T ss_conf 8999999999839999999976775897-4899999998859989986318999666843757799977---44889999
Q ss_pred HHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 8999999613879998423-204713588899999999854968998178
Q gi|254781047|r 130 PLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSN 178 (404)
Q Consensus 130 ~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN 178 (404)
-.+|..++.+.++|.+||- -=-|...+..+-.++..+.+...+++.|-+
T Consensus 105 i~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~Tvi~vtH~ 154 (171)
T cd03228 105 IAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHR 154 (171)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 99999997489989995776679989999999999998099989999579
No 150
>KOG0739 consensus
Probab=94.86 E-value=0.038 Score=33.67 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=21.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 6688649988888772899999999857
Q gi|254781047|r 63 YCSMQGIYLHGDVGQGKSMLMNLFFALV 90 (404)
Q Consensus 63 ~~~~kGlYL~G~VG~GKT~LMdlFy~~l 90 (404)
..|-+|+.|||++|+|||+|-.+--.-+
T Consensus 163 R~PwrgiLLyGPPGTGKSYLAKAVATEA 190 (439)
T KOG0739 163 RKPWRGILLYGPPGTGKSYLAKAVATEA 190 (439)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7754257886799975779999987414
No 151
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.84 E-value=0.19 Score=29.31 Aligned_cols=111 Identities=16% Similarity=0.084 Sum_probs=58.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHH----HHHHHHH--HHHHHHHHHHHHH------CCCCCCCCCCCCHHHHHHHH
Q ss_conf 4998888877289999999985781114----6888999--9999999999971------31122466557807899999
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKK----CRLHFYE--FMKDVHSRIIMYR------KKIEFGEILESDPIPLVASS 135 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K----~R~HFh~--FM~~ih~~l~~~~------~~~~~~~~~~~dpl~~va~~ 135 (404)
=+-|-|+-|+|||-|+..........+- .+...+. |.-++.. +.... ++....-++..----.+|..
T Consensus 23 ~~~iiG~nGsGKSTLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~l~~~~l~~~~~~LSGGqkQRvaiAra 101 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQF-LIDVGLGYLTLGQKLSTLSGGELQRVKLASE 101 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCHHHCCHHHCCCCCEEEHHHHHH-HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 999999999989999998887610311203210137553688577999-9974886677899168689999999999999
Q ss_pred HHCCCC--EEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 961387--9998423-2047135888999999998549689981786
Q gi|254781047|r 136 IALESR--VLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNF 179 (404)
Q Consensus 136 l~~~~~--lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~ 179 (404)
++.+.+ +|.+||= -=-|+.....+-.++..|-++|.++|+.|-.
T Consensus 102 L~~~p~~~ililDEPtsgLD~~~~~~l~~~l~~l~~~g~TvI~vtHd 148 (176)
T cd03238 102 LFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN 148 (176)
T ss_pred HHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 98689986899717744589879999999999999879989999478
No 152
>KOG0731 consensus
Probab=94.83 E-value=0.022 Score=35.15 Aligned_cols=141 Identities=18% Similarity=0.227 Sum_probs=72.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf 68864998888877289999999985781114688899999999999999713112246655780789999996138799
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL 143 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL 143 (404)
..|||+-|.|++|+|||+|-.+-..-+.++=- -+-=-+|+- +..-.+ .+... -|-..|+.. --.++
T Consensus 342 KiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~-svSGSEFvE-----~~~g~~-----asrvr-~lf~~ar~~--aP~ii 407 (774)
T KOG0731 342 KIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF-SVSGSEFVE-----MFVGVG-----ASRVR-DLFPLARKN--APSII 407 (774)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHCCCCCCEE-EECHHHHHH-----HHCCCC-----HHHHH-HHHHHHHCC--CCEEE
T ss_conf 67675178789998678999988530589646-413378888-----760343-----48889-999874326--98079
Q ss_pred EEEEEEECC------------CHHHHHHHHHHHHH----HHCCCEEEEECCCC----HHHHHCCCCCHHHHH--HH----
Q ss_conf 984232047------------13588899999999----85496899817868----677523874056689--89----
Q gi|254781047|r 144 CFDEFMITN------------IADAIILSRLFAAL----FSHGCIIVMTSNFI----PENLYKDEINRNVLV--SF---- 197 (404)
Q Consensus 144 CfDEF~V~D------------iaDAmil~rl~~~l----f~~gv~lV~TSN~~----P~dLY~~GLqR~~Fl--Pf---- 197 (404)
++||+-..- ---+--|..|+..+ -..||+++++-|++ |.-|=++-.-|.-++ |-
T Consensus 408 fideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r 487 (774)
T KOG0731 408 FIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGR 487 (774)
T ss_pred EECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCCCEECCCCCHHHH
T ss_conf 71454200312556666788807888999887875277677847998116886642887649875555232469851416
Q ss_pred HHHHHHCCEEEECC-CCCHHHH
Q ss_conf 99998505089804-7311221
Q gi|254781047|r 198 IELLEKKLEIISLD-SGQDYRR 218 (404)
Q Consensus 198 I~~lk~~~~V~~l~-~~~DYR~ 218 (404)
-++++-|..-..++ ...||..
T Consensus 488 ~~i~~~h~~~~~~~~e~~dl~~ 509 (774)
T KOG0731 488 ASILKVHLRKKKLDDEDVDLSK 509 (774)
T ss_pred HHHHHHHHHCCCCCCCHHHHHH
T ss_conf 8999998621577631567999
No 153
>KOG0738 consensus
Probab=94.83 E-value=0.026 Score=34.76 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 886499888887728999999998578
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
|=||+.++|++|+|||||-.+.+.-+.
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738 244 PWKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 530005567999747899999988616
No 154
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.83 E-value=0.061 Score=32.36 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHH-HHHHHHCC
Q ss_conf 998888877289999-99998578
Q gi|254781047|r 69 IYLHGDVGQGKSMLM-NLFFALVP 91 (404)
Q Consensus 69 lYL~G~VG~GKT~LM-dlFy~~l~ 91 (404)
.-|.|++|+|||.+. ...|+.+.
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~ 25 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA 25 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 158768999999999999999987
No 155
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.82 E-value=0.19 Score=29.19 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=52.2
Q ss_pred HHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 8999998537889981898787246389998999999982289-82899807897880134676531348998988745
Q gi|254781047|r 290 NDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHK-IGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLYE 367 (404)
Q Consensus 290 ~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~k-v~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~E 367 (404)
.++++=.+.++.|+|+||-.+... .....-|-+++..+++.+ ++++++|+.+|.+|- . ...|-.|||.=
T Consensus 89 ~~~l~~l~~~dll~iDDi~~i~g~-~~~ee~lF~l~N~~~~~g~~~ll~ts~~~P~~l~----~----~l~DL~SRl~~ 158 (235)
T PRK08084 89 PEVLEGMEQLSLVCIDNIECIAGD-ELWEMAIFDLYNRILESGKTRLLITGDRPPRQLN----L----GLPDLASRLDW 158 (235)
T ss_pred HHHHHHHHHCCEEEEECHHHHCCC-HHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCC----C----CCHHHHHHHHC
T ss_conf 999987641898998274554699-7899999999999998489669996798824302----3----12889999956
No 156
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.62 E-value=0.27 Score=28.23 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 864998888877289999999985781
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
-.=+-|-|+-|+|||-|+.+....++.
T Consensus 31 Ge~~~IvG~sGsGKSTLl~~i~G~~~~ 57 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGELEK 57 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCC
T ss_conf 989999999998589999998189525
No 157
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.61 E-value=0.096 Score=31.13 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=64.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCH--HHH--------------------------HHHHHHHHHHHHHHH---HH
Q ss_conf 86499888887728999999998578111--468--------------------------889999999999999---97
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEK--KCR--------------------------LHFYEFMKDVHSRII---MY 114 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~--K~R--------------------------~HFh~FM~~ih~~l~---~~ 114 (404)
-.=+-|-|+-|.|||-||.+....++... .-. .||... .+.+.+. ..
T Consensus 33 Gei~~llG~nGsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~v~q~~~~~~~l--tv~e~l~~~~~~ 110 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL--TVRETLDFALRC 110 (202)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCHHHHHHHCCEEEECCCCCCCCCC--CHHHHHHHHHHH
T ss_conf 849999989999889999998378789875137999999994051486420199986732237688--099999999984
Q ss_pred HCCC-CCCCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHH-CCCEEEEECCCCHHHHH
Q ss_conf 1311-224665578078999999613879998423-20471358889999999985-49689981786867752
Q gi|254781047|r 115 RKKI-EFGEILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFS-HGCIIVMTSNFIPENLY 185 (404)
Q Consensus 115 ~~~~-~~~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~-~gv~lV~TSN~~P~dLY 185 (404)
+++. -..-++..---..+|..++.+.++|++||- -=-|+..+.-+-+++..+.+ .|.++|+|+..+.++++
T Consensus 111 ~~~~~~~~LSgGqkqRv~iA~aL~~~P~illlDEPt~gLD~~~~~~i~~~l~~l~~~~~~t~ii~~~~~~~~~~ 184 (202)
T cd03233 111 KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIY 184 (202)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHH
T ss_conf 65874445899999999999999529988998387656899999999999999998779989999906989999
No 158
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.55 E-value=0.33 Score=27.69 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 499888887728999999998578
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
=+=|-|+-|+|||.||.+..--.+
T Consensus 27 ~~~iiGpSGsGKSTLlr~i~Gl~~ 50 (235)
T cd03299 27 YFVILGPTGSGKSVLLETIAGFIK 50 (235)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999996359999999974999
No 159
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.46 E-value=0.42 Score=27.06 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 4998888877289999999985781
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
=+=|-|+-|+|||-|+.+...-.+.
T Consensus 29 ~~~lvGpnGaGKSTLl~~i~Gl~~p 53 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFVPP 53 (255)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9999999984699999999759988
No 160
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.45 E-value=0.21 Score=29.00 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=70.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH----HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 8649988888772899999999857811146888999----999999999997131122466557807899999961387
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYE----FMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR 141 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~----FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~ 141 (404)
..=+-|-|+-|.|||-||.+..-.++... -++.+.. ++. ..+.. +..-..-..-++..----.+|..++.+-+
T Consensus 26 Gei~~lvG~nGaGKSTl~~~i~Gl~~p~~-G~i~i~G~~i~~~~-~~~~~-~~gi~~v~qLSgG~~Qrv~iaral~~~p~ 102 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKPDS-GEILVDGKEVSFAS-PRDAR-RAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCC-CEEEECCEECCCCC-HHHHH-HCCCCEECCCCHHHHHHHHHHHHHHHCCC
T ss_conf 98999998899899999999957768985-78999999999999-99999-87994894699899999999999972999
Q ss_pred EEEEEEEE-ECCCHHHHHHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf 99984232-04713588899999999854968998178686
Q gi|254781047|r 142 VLCFDEFM-ITNIADAIILSRLFAALFSHGCIIVMTSNFIP 181 (404)
Q Consensus 142 lLCfDEF~-V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P 181 (404)
+|.+||=- =-|+....-+..++..+-++|..+|.+|-...
T Consensus 103 llilDEPt~gLD~~~~~~i~~~l~~l~~~G~til~vtH~l~ 143 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 99990975579999999999999999878989999938499
No 161
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.44 E-value=0.43 Score=27.02 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 4998888877289999999985781
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
=+=|-|+-|.|||-||.+..-.++.
T Consensus 28 i~~liG~nGaGKSTLl~~i~Gl~~p 52 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLLPP 52 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9999999998599999999779889
No 162
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=94.43 E-value=0.056 Score=32.59 Aligned_cols=163 Identities=19% Similarity=0.231 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEE-CCCCCCH
Q ss_conf 970058999999997488778989999999999999998613543332256643102466666688649988-8887728
Q gi|254781047|r 1 MSLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLH-GDVGQGK 79 (404)
Q Consensus 1 m~~~~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~-G~VG~GK 79 (404)
|+++.+...|+- +.+..=-+|..++..|..... .. + .---||+ |+-|+||
T Consensus 1 M~y~aLyrkyRP----~~F~dvvGQ~~v~~~L~nai~---~~---------------r-------i~HAyLF~GprGtGK 51 (563)
T PRK06674 1 MSYQALYRVFRP----QKFEDVVGQEHVTKTLQNALL---QE---------------K-------VSHAYLFSGPRGTGK 51 (563)
T ss_pred CCCHHHHHHHCC----CCHHHHCCHHHHHHHHHHHHH---CC---------------C-------CCCEEEEECCCCCCH
T ss_conf 952878876389----976552480999999999998---49---------------9-------650343128998689
Q ss_pred HHHHHHHHHHCCCCHHH-------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH-----HCCCCEEEEEE
Q ss_conf 99999999857811146-------8889999999999999971311224665578078999999-----61387999842
Q gi|254781047|r 80 SMLMNLFFALVPIEKKC-------RLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI-----ALESRVLCFDE 147 (404)
Q Consensus 80 T~LMdlFy~~l~~~~K~-------R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l-----~~~~~lLCfDE 147 (404)
|-+--.|-.++.+.... --.-......-|..+.+.... +. ..-|-+..+-+.+ ...++|.-+||
T Consensus 52 ts~Ari~AkaLnC~~~~~~~pC~~C~~C~~i~~g~~~DviEiDaa--sn--~gVd~IR~i~~~v~~~P~~~~yKV~IIDe 127 (563)
T PRK06674 52 TSIAKVFAKAVNCEHAPVAEPCNECPSCLGITNGSISDVLEIDAA--SN--NGVDEIRDIRDKVKFAPSAVEYKVYIIDE 127 (563)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCC--CC--CCHHHHHHHHHHHCCCCCCCCEEEEEEEC
T ss_conf 999999999857999999887766878999855899877985255--55--78799999999826488678737999854
Q ss_pred EEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf 3204713588899999999854968998178686775238740566898999998505089804
Q gi|254781047|r 148 FMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD 211 (404)
Q Consensus 148 F~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~ 211 (404)
.|--...-+=-|-+.++.-=.+-+++.+|++ |+.| ...|..+|..+++.
T Consensus 128 ah~Lt~~A~NALLKtLEEPP~~viFILaTte--p~ki-------------~~TI~SRCQrf~F~ 176 (563)
T PRK06674 128 VHMLSIGAFNALLKTLEEPPGHVIFILATTE--PHKI-------------PPTIISRCQRFDFR 176 (563)
T ss_pred HHHCCHHHHHHHHHHHHCCCCCEEEEEECCC--HHHC-------------CHHHHHHHEEEECC
T ss_conf 5637999999999986388756499996599--4758-------------47887331031278
No 163
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.38 E-value=0.17 Score=29.62 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=39.6
Q ss_pred HHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 8999999613879998423-20471358889999999985496899817868
Q gi|254781047|r 130 PLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFI 180 (404)
Q Consensus 130 ~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~ 180 (404)
-.+|..++.+.++|.+||- -=-|+...--+.+++..+-++|..+|.+|-..
T Consensus 145 v~iAraL~~~P~lLlLDEPtagLD~~~~~~i~~ll~~l~~~G~tiiivsHdl 196 (271)
T PRK13638 145 VAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI 196 (271)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf 9999999659998998387545899999999999999997899999984888
No 164
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=94.37 E-value=0.44 Score=26.93 Aligned_cols=54 Identities=22% Similarity=0.308 Sum_probs=46.8
Q ss_pred HHHHHHHHHCCCCEEEEEEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf 7899999961387999842320-47135888999999998549689981786867
Q gi|254781047|r 129 IPLVASSIALESRVLCFDEFMI-TNIADAIILSRLFAALFSHGCIIVMTSNFIPE 182 (404)
Q Consensus 129 l~~va~~l~~~~~lLCfDEF~V-~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~ 182 (404)
.-.+|..++.+-++|.+||=-- -|++.+..+-.++..|-++|+.+|..|.+..+
T Consensus 151 rv~iA~aL~~~p~lLilDEPt~~LD~~~~~~l~~~l~~l~~~g~til~isH~l~~ 205 (513)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAILLDIIRDLKQHGIACIYISHKLNE 205 (513)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 9999887752998864066757888577799999999987559679999457143
No 165
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=94.35 E-value=0.15 Score=29.84 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=65.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH--HHH-HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 8864998888877289999999985781114688899--999-9999999997131122466557807899999961387
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY--EFM-KDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR 141 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh--~FM-~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~ 141 (404)
+..-|.|.|..|+||.++-...++..+-+.+-=+..+ ..- ..+.++|+-..+..-.+.....-.+- +.+ +.-
T Consensus 165 s~~~VLI~GEsGTGKe~~Ar~IH~~S~r~~~pFv~vnc~ai~~~l~eseLFG~~kgaftga~~~~~G~~----e~A-~gG 239 (457)
T PRK11361 165 SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLF----ERA-NEG 239 (457)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCH----HHC-CCC
T ss_conf 899589988998578999999998379889983876478798577899971876678788531469861----335-998
Q ss_pred EEEEEEEEECCCHHHHHHHHHHHHHHH-------------CCCEEEEECCCCHHHHHCCCCCHHHH
Q ss_conf 999842320471358889999999985-------------49689981786867752387405668
Q gi|254781047|r 142 VLCFDEFMITNIADAIILSRLFAALFS-------------HGCIIVMTSNFIPENLYKDEINRNVL 194 (404)
Q Consensus 142 lLCfDEF~V~DiaDAmil~rl~~~lf~-------------~gv~lV~TSN~~P~dLY~~GLqR~~F 194 (404)
-||+||..=-... +=.+|+..|-+ -.+.+|++||+.++++-+.|..|+.+
T Consensus 240 TLfLdeI~~l~~~---~Q~kLLr~L~~~~~~~~g~~~~~~~dvRiIaaT~~~L~~~v~~g~Fr~DL 302 (457)
T PRK11361 240 TLLLDEIGEMPLV---LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDL 302 (457)
T ss_pred CEECCCHHHHHHH---HHHHHHHHHHCCCEEECCCCCEEEECCEEEECCCCCHHHHHHCCCCHHHH
T ss_conf 2631466452399---99999999864927856997136653489965787859998758323889
No 166
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.31 E-value=0.32 Score=27.77 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=51.4
Q ss_pred HHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 999998537889981898787246389998999999982289828998078978801346765313489989887452
Q gi|254781047|r 291 DFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLYEM 368 (404)
Q Consensus 291 DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~EM 368 (404)
+.+.--+.++.++|+||-.+.... +...-+-+++..+++++..+++++..+|.++- +...+=.|||.-+
T Consensus 83 ~~l~~l~~~d~l~iDDi~~i~~~~-~~e~~lF~l~N~~~~~~~~ilits~~~p~~l~--------~~l~dL~SRl~~~ 151 (226)
T TIGR03420 83 EVLEGLEQADLVCLDDVEAIAGQP-EWQEALFHLYNRVREAGGRLLIAGRAAPAQLP--------LRLPDLRTRLAWG 151 (226)
T ss_pred HHHHHCCCCCEEEEECHHHHCCCH-HHHHHHHHHHHHHHHHCCEEEEECCCCHHHCC--------CCHHHHHHHHHCC
T ss_conf 999727448999996633343783-78999999999998652828986788823203--------2017799999688
No 167
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.31 E-value=0.26 Score=28.35 Aligned_cols=27 Identities=41% Similarity=0.540 Sum_probs=22.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 864998888877289999999985781
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
-.=+-|-|+.|+|||-|+.++..-++.
T Consensus 47 Ge~vaIvG~sGsGKSTL~~ll~gl~~p 73 (257)
T cd03288 47 GQKVGICGRTGSGKSSLSLAFFRMVDI 73 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 999999999998199999999605667
No 168
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.30 E-value=0.22 Score=28.89 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=64.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC---CCC--------------HHHHHHHHHHHH----------HHHHHHHHHHCCCCC
Q ss_conf 49988888772899999999857---811--------------146888999999----------999999997131122
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALV---PIE--------------KKCRLHFYEFMK----------DVHSRIIMYRKKIEF 120 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l---~~~--------------~K~R~HFh~FM~----------~ih~~l~~~~~~~~~ 120 (404)
=+=|-|+-|.|||-|+.+.--.. |.+ ...|....=+|. .+.+.+.......+
T Consensus 28 i~~iiGpnGaGKSTLl~~i~G~~~~~~~~G~I~~~g~~i~~~~~~~~~~~gi~~~~q~~~~~~~~~~~~~l~~~~~~LS- 106 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVNEGFS- 106 (200)
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCHHHHHHCCEEEECCCHHHCCCCCHHHHHHHHCCCCC-
T ss_conf 9999968999999999997077777852007999999988699999997694896367687079849999976463679-
Q ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 4665578078999999613879998423-204713588899999999854968998178
Q gi|254781047|r 121 GEILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSN 178 (404)
Q Consensus 121 ~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN 178 (404)
+..---..+|..++.+-+||.+||= -=-|+.....+.+++..+-++|.++|++|-
T Consensus 107 ---GGekqrv~iaral~~~P~lllLDEPtsgLD~~~~~~i~~~i~~l~~~g~tiiiitH 162 (200)
T cd03217 107 ---GGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162 (200)
T ss_pred ---HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf ---99999999999996099999996962269999999999999999857999999996
No 169
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.29 E-value=0.013 Score=36.64 Aligned_cols=126 Identities=20% Similarity=0.359 Sum_probs=69.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH--HHH------HHHHHCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 64998888877289999999985781114688899999999--999------9997131122466557807899999961
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDV--HSR------IIMYRKKIEFGEILESDPIPLVASSIAL 138 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~i--h~~------l~~~~~~~~~~~~~~~dpl~~va~~l~~ 138 (404)
.-+.+.|++|+|||+|-.-+-..+...+ .|.-.|... -++ +..++.. +-.......+.-
T Consensus 40 ehvlllGPPGtAKS~larrl~~~~~~a~----~FeyLltRFstPeElFGP~si~~Lk~~---------g~y~R~t~G~LP 106 (498)
T PRK13531 40 ESVFLLGPPGIAKSLIARRLKFAFQHAR----AFEYLMTRFSTPEEVFGPLSIQALKDE---------GRYERLTSGYLP 106 (498)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHCCCH----HHHHHHHCCCCHHHHCCCCCHHHHHHC---------CEEEEECCCCCC
T ss_conf 9469888995138899999999855740----899998746988885383329987117---------848972267588
Q ss_pred CCCEEEEEEEEECCCHHHHHHHHHHHHH----HHCCC--------EEEEECCCCHHHHHCCCCCH--HHHHHHHHHHHHC
Q ss_conf 3879998423204713588899999999----85496--------89981786867752387405--6689899999850
Q gi|254781047|r 139 ESRVLCFDEFMITNIADAIILSRLFAAL----FSHGC--------IIVMTSNFIPENLYKDEINR--NVLVSFIELLEKK 204 (404)
Q Consensus 139 ~~~lLCfDEF~V~DiaDAmil~rl~~~l----f~~gv--------~lV~TSN~~P~dLY~~GLqR--~~FlPfI~~lk~~ 204 (404)
++.+.++||..-.. .-||..|+..+ |.+|. .+|+.||--|++ ..||.- |||| -+
T Consensus 107 ~A~iaFLDEIfKan---sAILNtLLtilNEr~f~nG~~~~~vPL~~li~ASNElP~~--~~~L~AlyDRfL-------~R 174 (498)
T PRK13531 107 EAEIVFLDEIWKAG---PAILNTLLTAINERRFRNGAHEEKIPMRLLVAASNELPEA--DSSLEALYDRML-------IR 174 (498)
T ss_pred CCEEEHHHHHHHCC---HHHHHHHHHHHHHHEECCCCCEECCCHHHHHHCCCCCCCC--CCCHHHHHHHHH-------HH
T ss_conf 66131578786148---8999999998646403479831304468864304679999--840788887644-------10
Q ss_pred CEEEECCCCCHHH
Q ss_conf 5089804731122
Q gi|254781047|r 205 LEIISLDSGQDYR 217 (404)
Q Consensus 205 ~~V~~l~~~~DYR 217 (404)
+.|-.+.....++
T Consensus 175 ~~v~~v~~~~nF~ 187 (498)
T PRK13531 175 LWLDKVQDKANFR 187 (498)
T ss_pred EECCCCCCHHHHH
T ss_conf 2231316766799
No 170
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.28 E-value=0.14 Score=29.99 Aligned_cols=68 Identities=22% Similarity=0.321 Sum_probs=53.5
Q ss_pred HHHHHHHHHCCCCEEEEEE-EEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCE-
Q ss_conf 7899999961387999842-32047135888999999998549689981786867752387405668989999985050-
Q gi|254781047|r 129 IPLVASSIALESRVLCFDE-FMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLE- 206 (404)
Q Consensus 129 l~~va~~l~~~~~lLCfDE-F~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~- 206 (404)
--.+|..|+.+.+||++|| |+=-|++....+-+|+..|-+.|.++++.|-- +....++|+
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHD------------------L~~v~~~~D~ 208 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHD------------------LGLVMAYFDR 208 (254)
T ss_pred HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC------------------CHHHHHHCCE
T ss_conf 9999998536999899668754579878999999999998789889999588------------------1776853887
Q ss_pred EEECCCCC
Q ss_conf 89804731
Q gi|254781047|r 207 IISLDSGQ 214 (404)
Q Consensus 207 V~~l~~~~ 214 (404)
|+.|+...
T Consensus 209 vi~Ln~~~ 216 (254)
T COG1121 209 VICLNRHL 216 (254)
T ss_pred EEEECCEE
T ss_conf 99985763
No 171
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.26 E-value=0.16 Score=29.70 Aligned_cols=164 Identities=13% Similarity=0.094 Sum_probs=92.7
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 97005899999999748877898999999999999999861354333225664310246666668864998888877289
Q gi|254781047|r 1 MSLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKS 80 (404)
Q Consensus 1 m~~~~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT 80 (404)
||++.+...|+-. .+..=-.|..++..|..-..+ . .-+.-.-..|+.|+|||
T Consensus 1 msy~~la~KYRP~----~F~dvvGQe~vv~~L~nai~~---~---------------------rl~HAyLFsGprG~GKT 52 (560)
T PRK06647 1 MSYRGTATKRRPR----DFNSLEGQDFVVETLKHSIEK---N---------------------KIANAYIFSGPRGVGKT 52 (560)
T ss_pred CCCHHHHHHHCCC----CHHHHCCCHHHHHHHHHHHHC---C---------------------CCCCEEEEECCCCCCHH
T ss_conf 9537777642898----654403949999999999974---9---------------------97743663289987899
Q ss_pred HHHHHHHHHCCCCHHHH-------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH-----HCCCCEEEEEEE
Q ss_conf 99999998578111468-------889999999999999971311224665578078999999-----613879998423
Q gi|254781047|r 81 MLMNLFFALVPIEKKCR-------LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI-----ALESRVLCFDEF 148 (404)
Q Consensus 81 ~LMdlFy~~l~~~~K~R-------~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l-----~~~~~lLCfDEF 148 (404)
-+--.|-.++.+..... -.-......-|-.+.+..... . ..-|-+..+-+.. ...++|.-+||.
T Consensus 53 t~ArilAk~LnC~~~~~~~PCg~C~sC~~i~~g~~~DviEidaas---n-~~VddIR~l~e~v~~~P~~~~yKV~IIDEa 128 (560)
T PRK06647 53 SSARAFARCLNCVNGPTIMPCGECFSCKSIDNDSSLDVIEIDGAS---N-TSVQDVRQIKEEIMFPPASSRYRVYIIDEV 128 (560)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCC---C-CCHHHHHHHHHHHCCCCCCCCEEEEEECCH
T ss_conf 999999999659999998888788788887459998757643645---4-888999999998632876687069996465
Q ss_pred EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf 204713588899999999854968998178686775238740566898999998505089804
Q gi|254781047|r 149 MITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD 211 (404)
Q Consensus 149 ~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~ 211 (404)
|--..+-+=-|-+.++.--.+-+.+.+|.+ |+.+ +..|..+|..+++.
T Consensus 129 hmLt~~A~NALLKtLEEPP~~~~FILaTte--~~KI-------------~~TI~SRCQ~f~Fk 176 (560)
T PRK06647 129 HMLSNSAFNALLKTIEEPPPYIVFIFATTE--VHKL-------------PATIKSRCQHFNFR 176 (560)
T ss_pred HHCCHHHHHHHHHHHHCCCCCEEEEEECCC--HHHC-------------HHHHHHHHEEEECC
T ss_conf 655999999999986348875599997799--4768-------------48999651041055
No 172
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.21 E-value=0.47 Score=26.72 Aligned_cols=115 Identities=12% Similarity=0.093 Sum_probs=55.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCCCCCCHHHH---
Q ss_conf 86499888887728999999998578------111468889999999999999971311-----2246655780789---
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVP------IEKKCRLHFYEFMKDVHSRIIMYRKKI-----EFGEILESDPIPL--- 131 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~------~~~K~R~HFh~FM~~ih~~l~~~~~~~-----~~~~~~~~dpl~~--- 131 (404)
.+=+.+.+|-|-|||-+|.-+...-. .... --.-..|...+-.-|...-... .........++..
T Consensus 32 ~~l~lv~APaG~GKTtl~a~w~~~~~~~~Wlsld~~-d~~~~~f~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVRSPAGYGKTTLASQWAAGKNNVGWYSLDES-DNQPERFASYLIAALQQATNGHCSKSEALAEKRQYASLTSLFA 110 (903)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCC-CCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHH
T ss_conf 997999779998899999999834998599858854-4899999999999999856543311231135566554999999
Q ss_pred -HHHHHHCC--CCEEEEEEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEECC-CCHH
Q ss_conf -99999613--87999842320-4713588899999999854968998178-6867
Q gi|254781047|r 132 -VASSIALE--SRVLCFDEFMI-TNIADAIILSRLFAALFSHGCIIVMTSN-FIPE 182 (404)
Q Consensus 132 -va~~l~~~--~~lLCfDEF~V-~DiaDAmil~rl~~~lf~~gv~lV~TSN-~~P~ 182 (404)
+..++..- --+|++|.||. .|..=.-.|..|++.+-. ++.+|.+|= .||-
T Consensus 111 ~l~~~l~~~~~~~~lvlDD~h~i~~~~~~~~l~~Ll~~~p~-~l~lvl~sR~~p~l 165 (903)
T PRK04841 111 QLFIELSDWHQPLYLVLDDYHLITNPEIHEAMRFFLRHQPE-NLTLVVLSRNLPPL 165 (903)
T ss_pred HHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC-CEEEEEEECCCCCC
T ss_conf 99999755899869998683648886899999999983898-83899876899987
No 173
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.21 E-value=0.14 Score=30.08 Aligned_cols=102 Identities=14% Similarity=0.091 Sum_probs=64.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf 49988888772899999999857811146888999999999999997131122466557807899999961387999842
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDE 147 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDE 147 (404)
=+=|-|+=|+|||-|+.+.--.+.... -.+.+..-. +....+.. .-++..----.+|..++.+.+++.+||
T Consensus 27 iv~ilGpNGaGKSTllk~i~G~l~p~~-G~i~~~g~~------~~~~pq~~--~LSGGqrQRv~iAral~~~p~lllLDE 97 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNG-DNDEWDGIT------PVYKPQYI--DLSGGELQRVAIAAALLRNATFYLFDE 97 (177)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC-CCEEECCCC------EECCCCCC--CCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 999989999999999999968867889-946666861------22155515--079899999999999823999999748
Q ss_pred EE-ECCCHHHHHHHHHHHHHHHCC-CEEEEECC
Q ss_conf 32-047135888999999998549-68998178
Q gi|254781047|r 148 FM-ITNIADAIILSRLFAALFSHG-CIIVMTSN 178 (404)
Q Consensus 148 F~-V~DiaDAmil~rl~~~lf~~g-v~lV~TSN 178 (404)
-- =-|+....-+.++++.+.+++ .++|.+|-
T Consensus 98 Pts~LD~~~r~~i~~~ik~l~~~~~~Tvl~vsH 130 (177)
T cd03222 98 PSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130 (177)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 865389999999999999999965977999858
No 174
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=94.19 E-value=0.32 Score=27.81 Aligned_cols=123 Identities=16% Similarity=0.122 Sum_probs=65.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH--HHH-HHHHHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHCC
Q ss_conf 68864998888877289999999985781114688899--999-9999999997131122466-5578078999999613
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY--EFM-KDVHSRIIMYRKKIEFGEI-LESDPIPLVASSIALE 139 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh--~FM-~~ih~~l~~~~~~~~~~~~-~~~dpl~~va~~l~~~ 139 (404)
.+..-|-|.|..|+||..+-...+...+-+.+-=+..+ ..- ..+.+.|+-..+..-.+.. ....-+ ...+
T Consensus 160 ~s~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfv~vnC~~l~~~l~eseLFG~~~gaftga~~~~~g~~------~~A~ 233 (441)
T PRK10365 160 PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRF------VEAD 233 (441)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCE------EECC
T ss_conf 8899489989998109999999996578778980798789898455589861775568789653468987------7889
Q ss_pred CCEEEEEEEEECCCHHHHHHHHHHHHHHH-------------CCCEEEEECCCCHHHHHCCCCCHHHHH
Q ss_conf 87999842320471358889999999985-------------496899817868677523874056689
Q gi|254781047|r 140 SRVLCFDEFMITNIADAIILSRLFAALFS-------------HGCIIVMTSNFIPENLYKDEINRNVLV 195 (404)
Q Consensus 140 ~~lLCfDEF~V~DiaDAmil~rl~~~lf~-------------~gv~lV~TSN~~P~dLY~~GLqR~~Fl 195 (404)
.--|++||..--+.. +=.+|+..|-+ -.+.+|++||+...++-..|..|+.+.
T Consensus 234 gGTLfLdeI~~l~~~---~Q~kLl~~l~~~~~~~~g~~~~~~~d~RiIaat~~~l~~~v~~g~Fr~dLy 299 (441)
T PRK10365 234 GGTLFLDEIGDISPM---MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 (441)
T ss_pred CCEECCCCCCCCCHH---HHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCCHHHHHHCCCCHHHHH
T ss_conf 982550231529999---999999877752100058873441363799837889999988198258999
No 175
>PRK13544 consensus
Probab=94.14 E-value=0.49 Score=26.63 Aligned_cols=64 Identities=13% Similarity=0.166 Sum_probs=44.9
Q ss_pred HHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEE
Q ss_conf 8999999613879998423-204713588899999999854968998178686775238740566898999998505089
Q gi|254781047|r 130 PLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEII 208 (404)
Q Consensus 130 ~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~ 208 (404)
-.+|..++.+.+++.+||= -=-|+...-++..++..+-++|.++|.||.... .+..-|+++
T Consensus 135 v~la~aL~~~~~illLDEPt~gLD~~s~~~i~~~i~~~~~~g~~vIi~sHd~~------------------e~~~~cd~i 196 (208)
T PRK13544 135 VALSRLLIYNTNVWIIDEPFANLDSATKELILELILTRLEQNGIVIISDHSKT------------------ETYGECQVI 196 (208)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH------------------HHHHHCCEE
T ss_conf 99999985699999997986668999999999999999868999999869999------------------999768999
Q ss_pred ECC
Q ss_conf 804
Q gi|254781047|r 209 SLD 211 (404)
Q Consensus 209 ~l~ 211 (404)
.|+
T Consensus 197 ~l~ 199 (208)
T PRK13544 197 NLE 199 (208)
T ss_pred EEC
T ss_conf 803
No 176
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=94.14 E-value=0.04 Score=33.51 Aligned_cols=141 Identities=16% Similarity=0.242 Sum_probs=72.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH--HHHHHHHHHHHHHCCCCCCCCCCCCHHH-----------
Q ss_conf 688649988888772899999999857811146888999--9999999999971311224665578078-----------
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYE--FMKDVHSRIIMYRKKIEFGEILESDPIP----------- 130 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~--FM~~ih~~l~~~~~~~~~~~~~~~dpl~----------- 130 (404)
+-||=|=||||+|+|||==--|-.+-+.... . -=|.+ =..||-+. +.+-.+.+-.|||-
T Consensus 84 PNPQHVIiYGPPGVGKTAAARLVLeeAKk~~-~-SPFke~A~FVEiDAT------T~RFDERGIADPLIGSVHDPIYQGA 155 (532)
T TIGR02902 84 PNPQHVIIYGPPGVGKTAAARLVLEEAKKNP-A-SPFKEEAAFVEIDAT------TARFDERGIADPLIGSVHDPIYQGA 155 (532)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCC-C-CCCCCCCEEEEEECC------CCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 6896389878869617899999999865087-5-378988668985051------0360214666656776158533376
Q ss_pred -----------HHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEE----EECCC----CHHHHHCCCCC
Q ss_conf -----------999999613879998423-20471358889999999985496899----81786----86775238740
Q gi|254781047|r 131 -----------LVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIV----MTSNF----IPENLYKDEIN 190 (404)
Q Consensus 131 -----------~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV----~TSN~----~P~dLY~~GLq 190 (404)
+-..=-....=|||+||- ++|= ..|.+||+-|=+++|+|= ..||. +-.|...|||
T Consensus 156 GplG~AGIPQPK~GAVT~AHGGvLFIDEIGELHP----~~MNKLLKVLEDRKVFLdSAYY~s~~pniP~hI~dIFqnGl- 230 (532)
T TIGR02902 156 GPLGVAGIPQPKPGAVTKAHGGVLFIDEIGELHP----VQMNKLLKVLEDRKVFLDSAYYSSEDPNIPSHIRDIFQNGL- 230 (532)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCH----HHHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHCCCC-
T ss_conf 5457885575877763202586551212466582----43531411330222000012358777865427899720678-
Q ss_pred HHHHHHHHHHHHHCCEEEECCCCCHHHHCCCCC--------------CCEEEECCCHHHHHHH
Q ss_conf 566898999998505089804731122112367--------------8302203530226899
Q gi|254781047|r 191 RNVLVSFIELLEKKLEIISLDSGQDYRRKEQSI--------------LPIYMTPLNSYNRVLM 239 (404)
Q Consensus 191 R~~FlPfI~~lk~~~~V~~l~~~~DYR~~~~~~--------------~~~y~~p~~~~~~~~l 239 (404)
+=|||+-..+- ..+||-|++.+--++.
T Consensus 231 ----------------------PADFRLiGATTR~PeEIpPAlRSRC~EIFFR~L~~EEi~~i 271 (532)
T TIGR02902 231 ----------------------PADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLKEEIKEI 271 (532)
T ss_pred ----------------------CCCEECCCCCCCCCCCCCHHHHCCCEEEEECCCCHHHHHHH
T ss_conf ----------------------73401213336987767834650522677168887899999
No 177
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.13 E-value=0.29 Score=28.09 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 4998888877289999999985781
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
=+=|-|+=|.|||-|+.+..-.++.
T Consensus 28 i~~iiG~nGaGKSTLl~~i~Gl~~p 52 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLIKE 52 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9999889999899999999568577
No 178
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=94.13 E-value=0.49 Score=26.61 Aligned_cols=16 Identities=19% Similarity=0.569 Sum_probs=13.9
Q ss_pred EEEEECCCCCCHHHHH
Q ss_conf 4998888877289999
Q gi|254781047|r 68 GIYLHGDVGQGKSMLM 83 (404)
Q Consensus 68 GlYL~G~VG~GKT~LM 83 (404)
-+.+-++.|.|||...
T Consensus 16 ~~iv~~pTGsGKT~~~ 31 (167)
T pfam00270 16 DVLVQAPTGSGKTLAF 31 (167)
T ss_pred CEEEECCCCCCHHHHH
T ss_conf 7899889997589999
No 179
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.05 E-value=0.11 Score=30.80 Aligned_cols=131 Identities=15% Similarity=0.175 Sum_probs=76.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH-----CC
Q ss_conf 8864998888877289999999985781114688899999999999999713112246655780789999996-----13
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIA-----LE 139 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~-----~~ 139 (404)
-|....++|+-|.||+-+...|-..+-....- -.=+.+...+|-.++...-... +....-|-+..+.+.+. ..
T Consensus 18 l~HAyLf~Gp~G~GK~~~A~~~A~~LLc~~~p-~~~~~i~~~~HPD~~~i~pe~k-~~~~~Id~iR~l~~~i~~~p~~g~ 95 (290)
T PRK05917 18 VPSAILLHGQDLSNLSQYAYELASLILLESSP-EAQYKISQKIHPDIHEFFPEGK-GRLHSIETPRAIKKQIWIHPYEAN 95 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHCCCCCEEEECCCCC-CCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 66068768999865999999999998578996-1688987468998599615777-887867899999999641864688
Q ss_pred CCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf 8799984232047135888999999998549689981786867752387405668989999985050898047
Q gi|254781047|r 140 SRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS 212 (404)
Q Consensus 140 ~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~ 212 (404)
++|.-+||-+--..+-|=-|=+++|.=-.+-+.+.+|++ |+.| ...|..+|..+++..
T Consensus 96 ~KV~IId~Ad~Mn~~AaNALLKtLEEPP~~tvfILit~~--~~~l-------------LpTI~SRCQ~I~i~~ 153 (290)
T PRK05917 96 YKIYIIHEADRMTLDAISAFLKVLEDPPKHSVIILTSAK--PQRL-------------PPTIRSRSLSIHIPG 153 (290)
T ss_pred CEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEECC--HHHC-------------CHHHHHCCCEEECCC
T ss_conf 269997567763899999999973479878599998699--2548-------------237763351167776
No 180
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.99 E-value=0.52 Score=26.45 Aligned_cols=126 Identities=17% Similarity=0.249 Sum_probs=72.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHHHHHHH------HCC-------------CCC
Q ss_conf 86499888887728999999998578111------46888999999999999997------131-------------122
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEK------KCRLHFYEFMKDVHSRIIMY------RKK-------------IEF 120 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~------K~R~HFh~FM~~ih~~l~~~------~~~-------------~~~ 120 (404)
+.+.-++|+-|.||+.+--.|-..+-... ..|+ ...-|-.++.. .++ .+.
T Consensus 26 ~hAyLF~Gp~G~GK~~~A~~fa~~Ll~~~~~~~~~~~ri-----~~~nHPDl~~i~P~~~~~g~~~~~~~~~~~~~~~~~ 100 (314)
T PRK07399 26 APAYLFAGPEGVGRKLAALRFIEGLLSQGSPSKNIRRRL-----EEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKS 100 (314)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHH-----HCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 744877899983299999999999857899997665587-----518999778860562003454557789876530268
Q ss_pred CCCCCCCHHHHHHHHH-----HCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHH
Q ss_conf 4665578078999999-----61387999842320471358889999999985496899817868677523874056689
Q gi|254781047|r 121 GEILESDPIPLVASSI-----ALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLV 195 (404)
Q Consensus 121 ~~~~~~dpl~~va~~l-----~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~Fl 195 (404)
.....-|-+..+.+.+ -...+|.-+|+.+--..+-|=-|=+.++. =.+++++..|+| |+.|
T Consensus 101 ~~~I~idqIR~l~~~l~~~p~~~~~kVvII~~ae~m~~~AaNaLLKtLEE-P~~~~fILit~~--~~~l----------- 166 (314)
T PRK07399 101 PPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE-PGNGTLILIAPS--PESL----------- 166 (314)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCC-CCCCEEEEEECC--HHHC-----------
T ss_conf 77787999999999973188568847999889787199999999986147-878569999799--3649-----------
Q ss_pred HHHHHHHHCCEEEECCC
Q ss_conf 89999985050898047
Q gi|254781047|r 196 SFIELLEKKLEIISLDS 212 (404)
Q Consensus 196 PfI~~lk~~~~V~~l~~ 212 (404)
+..|..+|..+++..
T Consensus 167 --LpTI~SRCQ~i~F~~ 181 (314)
T PRK07399 167 --LPTIVSRCQIIPFYR 181 (314)
T ss_pred --CHHHHCCCEEEECCC
T ss_conf --146641875633899
No 181
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=93.97 E-value=0.073 Score=31.90 Aligned_cols=21 Identities=38% Similarity=0.706 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHH-HHHHHH
Q ss_conf 998888877289999-999985
Q gi|254781047|r 69 IYLHGDVGQGKSMLM-NLFFAL 89 (404)
Q Consensus 69 lYL~G~VG~GKT~LM-dlFy~~ 89 (404)
+-+.|++|+|||.|. ++|++.
T Consensus 4 ~~V~G~pGtGKTvv~l~l~~~l 25 (348)
T pfam09848 4 FLVTGGPGTGKTVVALNLFAEL 25 (348)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9997779938999999999998
No 182
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.91 E-value=0.53 Score=26.42 Aligned_cols=114 Identities=21% Similarity=0.213 Sum_probs=68.1
Q ss_pred CCCCCCE-EEEECCCCCCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCHHHHHHH
Q ss_conf 6668864-998888877289999999985781--11468889999999999999971311----2246655780789999
Q gi|254781047|r 62 KYCSMQG-IYLHGDVGQGKSMLMNLFFALVPI--EKKCRLHFYEFMKDVHSRIIMYRKKI----EFGEILESDPIPLVAS 134 (404)
Q Consensus 62 ~~~~~kG-lYL~G~VG~GKT~LMdlFy~~l~~--~~K~R~HFh~FM~~ih~~l~~~~~~~----~~~~~~~~dpl~~va~ 134 (404)
.+..|-| +..-|+-|+|||-|....-+.+=. ..--|+.--+||-. .....+-|.. +..++++ -.+.|
T Consensus 534 ~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~DMSEy~E~--hsvsrLIGaPPGYVGy~eGG~--LTeaV-- 607 (823)
T CHL00095 534 NPNRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLDMSEYMEK--HTVSKLIGSPPGYVGYNEGGQ--LTEAV-- 607 (823)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC--CCHHHHCCCCCCCCCCCCCCC--HHHHH--
T ss_conf 899974689987899887799999999997478202588535101554--207674589987667787882--01988--
Q ss_pred HHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHC--------------CCEEEEECCCCHHHHHC
Q ss_conf 99613879998423204713588899999999854--------------96899817868677523
Q gi|254781047|r 135 SIALESRVLCFDEFMITNIADAIILSRLFAALFSH--------------GCIIVMTSNFIPENLYK 186 (404)
Q Consensus 135 ~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~--------------gv~lV~TSN~~P~dLY~ 186 (404)
=-+-+-|+.|||++=-+ .=++.-|++ +++. ++++|+|||.--+.+.+
T Consensus 608 -rr~PysVvLfDEIEKAH---pdV~nilLQ-vlDdG~LtD~~Gr~vdF~NtIIImTSNlGs~~i~~ 668 (823)
T CHL00095 608 -RKKPYTVVLFDEIEKAH---PDIFNLLLQ-ILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIEK 668 (823)
T ss_pred -HCCCCEEEEECHHHHCC---HHHHHHHHH-HCCCCCCCCCCCCEEECEEEEEEECCCCCHHHHHH
T ss_conf -71998699862131138---899998876-51688434899998843103999716505588874
No 183
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.90 E-value=0.37 Score=27.42 Aligned_cols=126 Identities=12% Similarity=0.116 Sum_probs=69.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHH--------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH---
Q ss_conf 6499888887728999999998578111468--------88999999999999997131122466557807899999---
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCR--------LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASS--- 135 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R--------~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~--- 135 (404)
...-..|+-|+|||-+.-.|-.++.+....- -.=-++...-|..+.+...... . +-|-+..+.+.
T Consensus 40 HAyLF~GprGtGKTT~ArilAkaLnC~~~~~~~~pCg~C~~C~~I~~g~~~DViEiDaAs~---~-gVddIRel~e~v~~ 115 (462)
T PRK06305 40 HAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAICKEISSGTSLDVIEIDGASH---R-GIEDIRQINETVLF 115 (462)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCC---C-CHHHHHHHHHHHCC
T ss_conf 2343038998599999999999967999988889887668889986389998686435534---4-66899999977100
Q ss_pred --HHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf --9613879998423204713588899999999854968998178686775238740566898999998505089804
Q gi|254781047|r 136 --IALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD 211 (404)
Q Consensus 136 --l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~ 211 (404)
....++|.-+||.|--.-+-.=-|-+.++.-=.+-+++.+|.+ |+.+ +..|..+|..+++.
T Consensus 116 ~P~~~~yKVyIIDEvhmLs~~AfNALLKtLEEPP~~v~FILaTTe--~~KI-------------p~TIlSRCQrf~F~ 178 (462)
T PRK06305 116 TPSKSQYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTE--IHKI-------------PGTILSRCQKMHLK 178 (462)
T ss_pred CCCCCCEEEEEEECHHHCCHHHHHHHHHHHHCCCCCEEEEEEECC--HHHC-------------CHHHHHHHHEEECC
T ss_conf 886775059998152117999999999986189877499998188--1428-------------54787654023325
No 184
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.79 E-value=0.57 Score=26.21 Aligned_cols=55 Identities=20% Similarity=0.205 Sum_probs=35.6
Q ss_pred HHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 8999999613879998423-204713588899999999854968998178686775
Q gi|254781047|r 130 PLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404)
Q Consensus 130 ~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404)
-.+|..|+.+-++|++||= -=-|+..+.-+-+++..+-+.|.++|.|+-.+-+++
T Consensus 152 v~iA~aL~~~P~illLDEPTsgLD~~~~~~i~~~l~~l~~~~~~vi~~~H~~~~~~ 207 (226)
T cd03234 152 VSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDL 207 (226)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
T ss_conf 99999996599989995886568999999999999999978999999988898999
No 185
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=93.62 E-value=0.19 Score=29.29 Aligned_cols=70 Identities=19% Similarity=0.277 Sum_probs=52.4
Q ss_pred HHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 6899999853788998189878724638999899999998228982899807897880134676531348998988745
Q gi|254781047|r 289 ANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLYE 367 (404)
Q Consensus 289 ~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~E 367 (404)
..++.+-.+..+.++|+||..+.. ......-+-++|+.+.+++.++++++..+|.++- . .-.+=.|||.-
T Consensus 88 ~~~f~~~l~~~d~l~iDDi~~l~~-~~~~ee~lf~l~N~~~~~~~~lllts~~~p~~l~----~----~~~dL~SRL~~ 157 (219)
T pfam00308 88 IEAFKKSYRNVDLLLIDDIQFLAG-KEKTQEEFFHTFNALHENNKQIVLTSDRPPKELE----G----FEDRLRSRFEW 157 (219)
T ss_pred HHHHHHHHHHCCHHHHCCHHHHCC-CHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC----C----CCHHHHHHHHC
T ss_conf 889999976323365223676568-6478999999999999729869997799810024----5----32779999868
No 186
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.53 E-value=0.029 Score=34.40 Aligned_cols=111 Identities=17% Similarity=0.213 Sum_probs=68.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-----------------CCCCCCCHHHH
Q ss_conf 9988888772899999999857811146888999999999999997131122-----------------46655780789
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEF-----------------GEILESDPIPL 131 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~-----------------~~~~~~dpl~~ 131 (404)
+-|-|+-|.|||-||.+....++... -++.+..- +++..-...+...+. .-++..---..
T Consensus 29 ~gl~G~NGaGKSTLl~~i~Gl~~p~~-G~i~i~g~--~~~~~~~~~~~~ig~v~q~~~l~~~ltv~e~l~LSgG~kqrv~ 105 (173)
T cd03230 29 YGLLGPNGAGKTTLIKIILGLLKPDS-GEIKVLGK--DIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLA 105 (173)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC-CEEEECCE--ECCCCHHHHHCCEEEEECCCCCCCCCCHHHHHHCCHHHHHHHH
T ss_conf 99987899799999999976857787-88999999--9886848886578999568766712677898633989999999
Q ss_pred HHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf 99999613879998423-2047135888999999998549689981786867
Q gi|254781047|r 132 VASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPE 182 (404)
Q Consensus 132 va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~ 182 (404)
+|..++.+.++|++||= -=-|+.....+..++..+-++|..+|.+|....+
T Consensus 106 ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~i~~l~~~g~tvi~~tH~l~~ 157 (173)
T cd03230 106 LAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEE 157 (173)
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
T ss_conf 9999964999999908865799999999999999999689999999283899
No 187
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=0.043 Score=33.35 Aligned_cols=122 Identities=22% Similarity=0.242 Sum_probs=59.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHH---HHCCCCCCCCCCCCHHHHHH------
Q ss_conf 688649988888772899999999857811-14688899999999999999---71311224665578078999------
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIE-KKCRLHFYEFMKDVHSRIIM---YRKKIEFGEILESDPIPLVA------ 133 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~-~K~R~HFh~FM~~ih~~l~~---~~~~~~~~~~~~~dpl~~va------ 133 (404)
..-.++.++|++|+|||||-.=.-.-+|.- ...=+-+..-+.-. ..++. .........+++.-......
T Consensus 196 AGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~-~~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p 274 (490)
T COG0606 196 AGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA-GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVP 274 (490)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC-CCCCCCCCCCEECCCCCCCCCCHHHHHHCCCCCC
T ss_conf 438867875699886567642310259998708889998887635-4324678641107876887402288973789988
Q ss_pred --HHH-HCCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHHCCCE----------------EEEECCCCHHHHHCCCCCH
Q ss_conf --999-6138799984232-04713588899999999854968----------------9981786867752387405
Q gi|254781047|r 134 --SSI-ALESRVLCFDEFM-ITNIADAIILSRLFAALFSHGCI----------------IVMTSNFIPENLYKDEINR 191 (404)
Q Consensus 134 --~~l-~~~~~lLCfDEF~-V~DiaDAmil~rl~~~lf~~gv~----------------lV~TSN~~P~dLY~~GLqR 191 (404)
-++ ....-||++||+- -.+ -+|.+|-+-| +.|-+ +|+..|-.|-.-|.++++|
T Consensus 275 ~PGeIsLAH~GVLFLDElpef~~----~iLe~LR~PL-E~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~ 347 (490)
T COG0606 275 RPGEISLAHNGVLFLDELPEFKR----SILEALREPL-ENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRR 347 (490)
T ss_pred CCCCEEEECCCEEEEECCCHHHH----HHHHHHHCCC-CCCCEEEEECCCEEEEEEEEEEHHHCCCCCCCCCCCCCCC
T ss_conf 98735430387788614421059----9999973741-2581799975871687212677522399976478887777
No 188
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=93.45 E-value=0.075 Score=31.82 Aligned_cols=209 Identities=16% Similarity=0.182 Sum_probs=92.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH-HHHHHCCCCEE
Q ss_conf 88649988888772899999999857811146888999999999999997131122466557807899-99996138799
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLV-ASSIALESRVL 143 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~v-a~~l~~~~~lL 143 (404)
..|=+||+|+||.|||-|...+-..+..-. +..+++ -+-.++||..+ ..++....
T Consensus 84 ~kqIllL~GPVGsGKSsl~e~LK~glE~y~----------------~Y~i~g-----sPm~e~PL~L~~p~~~r~~l--- 139 (358)
T pfam08298 84 RKQILYLLGPVGGGKSSLAERLKKLLELVP----------------IYALKG-----SPVFESPLHLFNPHHLRDIL--- 139 (358)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCCCC----------------EEEECC-----CCCCCCCCCCCCHHHHHHHH---
T ss_conf 105899977898775899999998720586----------------488448-----97778985477867759999---
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHCCCCC
Q ss_conf 98423204713588899999999854968998178686775238740566898999998505089804731122112367
Q gi|254781047|r 144 CFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSI 223 (404)
Q Consensus 144 CfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DYR~~~~~~ 223 (404)
-+|+-+.+. -....-.| ..|.+.--+=.-+ +++.|..+--.+.+|..-.
T Consensus 140 -e~~~gi~~~--------------------~i~g~l~P-------~~~~rL~e~~Gd~-~~~~V~r~~~S~~~r~gi~-- 188 (358)
T pfam08298 140 -EDEYGIPRR--------------------RLEGDLSP-------WCTKRLEEFGGDI-EKFKVVKIFPSILRQIGIA-- 188 (358)
T ss_pred -HHHHCCCHH--------------------HCCCCCCH-------HHHHHHHHHCCCH-HHEEEEEECCCCCCCEEEE--
T ss_conf -987499521--------------------20898898-------9999999938985-5278999555600456899--
Q ss_pred CCEEEECCCHHHHH---HHHH-HHHHHCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHH----
Q ss_conf 83022035302268---9999-999860444467763276368089961220211110199985210246899999----
Q gi|254781047|r 224 LPIYMTPLNSYNRV---LMDK-LWAHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEI---- 295 (404)
Q Consensus 224 ~~~y~~p~~~~~~~---~l~~-~f~~l~~~~~~~~~~i~v~~gR~i~v~~~~~~va~f~F~eLC~~~lg~~DYi~I---- 295 (404)
-+.|.|+.++. ...+ -+.++..-.+.-+. . -.+.-..+.++-..+.|.|+...|.-.--++--
T Consensus 189 ---t~~P~D~~nqD~s~L~G~vdi~kl~~~~~~dP~-a-----~~~~G~l~~aNrGl~efvE~~K~~~~~L~~lL~atQE 259 (358)
T pfam08298 189 ---KTEPGDENNQDISALVGKVDIRKLEEYSQNDPD-A-----YSYSGALNRANQGLMEFVEMFKAPIKVLHPLLTATQE 259 (358)
T ss_pred ---EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC-E-----ECCCCCEECCCCCCEEEHHHHCCCHHHHHHHHCCCCC
T ss_conf ---968999876337787433209877410447984-2-----4567700003577554098761829999998522124
Q ss_pred -----HHHCCEEEECCCCCCCCCCHHHHHHHH------HHHHHHHCCCCCEEEE
Q ss_conf -----853788998189878724638999899------9999982289828998
Q gi|254781047|r 296 -----ANRFDVVIINDIPLLKEDRKDWIKRFI------MLIDVFYEHKIGLIIS 338 (404)
Q Consensus 296 -----a~~f~ti~I~~VP~l~~~~~d~arRFI------~LID~lYd~kv~Li~s 338 (404)
.++|..|-++.|- ++-.|..+-++|. .|+|.++--+++-.+.
T Consensus 260 ~~i~~~~~~~~i~~D~vI-iahsNe~E~~~f~~~~~~eA~~dR~~~v~vPY~lr 312 (358)
T pfam08298 260 GNYNSTEKFSAIPFDGII-LAHSNESEWNSFKSNKNNEAFLDRIVVIKVPYCLR 312 (358)
T ss_pred CCCCCCCCCCCEECCEEE-ECCCCHHHHHHHHCCCCCHHHHCCEEEEECCCCCC
T ss_conf 622477875603314268-76898499998744864346656379996763267
No 189
>KOG2543 consensus
Probab=93.44 E-value=0.65 Score=25.83 Aligned_cols=121 Identities=21% Similarity=0.255 Sum_probs=68.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHH---HH--HHHHHHHHHHHHHHHHHHCCCCCCCCCC------CCHHHHH
Q ss_conf 68864998888877289999999985781114---68--8899999999999999713112246655------7807899
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKK---CR--LHFYEFMKDVHSRIIMYRKKIEFGEILE------SDPIPLV 132 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K---~R--~HFh~FM~~ih~~l~~~~~~~~~~~~~~------~dpl~~v 132 (404)
..|--++|||.-|+|||.+.-.++..+..+.- .+ +-.-.+.. +-+.........+.... .|-+...
T Consensus 28 ~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle---~IL~~~~~~d~dg~~~~~~~en~~d~i~~l 104 (438)
T KOG2543 28 TIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLE---KILNKSQLADKDGDKVEGDAENFSDFIYLL 104 (438)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEHHHHCCHHHHHH---HHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 66515799614787455999999860378630541577516799999---999873567874055542799999999999
Q ss_pred HH--HHHC--CCCEEEEEEEEECCCHHHHHHHHHHH--HHHHCCCEEEEECCCCHHHHHCC
Q ss_conf 99--9961--38799984232047135888999999--99854968998178686775238
Q gi|254781047|r 133 AS--SIAL--ESRVLCFDEFMITNIADAIILSRLFA--ALFSHGCIIVMTSNFIPENLYKD 187 (404)
Q Consensus 133 a~--~l~~--~~~lLCfDEF~V~DiaDAmil~rl~~--~lf~~gv~lV~TSN~~P~dLY~~ 187 (404)
.+ +..+ +.-+|.+|-++---=.||.++..||+ .+.+.....|.+|-.++++-|..
T Consensus 105 ~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~ 165 (438)
T KOG2543 105 VQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLI 165 (438)
T ss_pred HHHHHHHCCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHC
T ss_conf 8447764467449999747776630650788999989987377736999832666777521
No 190
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.43 E-value=0.26 Score=28.36 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 4998888877289999999985781
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
=+-|-|+=|.|||-|+.+..-.++.
T Consensus 29 ~~~l~G~NGaGKSTLl~~l~Gl~~p 53 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLARP 53 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9999999998599999999768888
No 191
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=93.36 E-value=0.67 Score=25.76 Aligned_cols=53 Identities=26% Similarity=0.333 Sum_probs=45.8
Q ss_pred HHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf 8999999613879998423-2047135888999999998549689981786867
Q gi|254781047|r 130 PLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPE 182 (404)
Q Consensus 130 ~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~ 182 (404)
-.+|+.++.+-++|.+||= ---|+...--|..++..|-+.|+.+|..|++..+
T Consensus 144 v~iA~aL~~~p~lLiLDEPTs~LD~~~~~~l~~~l~~l~~~g~tii~i~h~l~~ 197 (490)
T PRK10938 144 TLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDE 197 (490)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf 999999707998999837433699999999999999999649917999545999
No 192
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=93.33 E-value=0.21 Score=28.99 Aligned_cols=30 Identities=17% Similarity=0.342 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCH
Q ss_conf 886499888887728999999998578111
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEK 94 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~ 94 (404)
.|.-|-|||.-|+|||....-+.+.+....
T Consensus 42 ~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~ 71 (383)
T TIGR02928 42 RPSNIFIYGKTGTGKTAVTKYVMKELEEAA 71 (383)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 987258878889878899999999999986
No 193
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.33 E-value=0.58 Score=26.19 Aligned_cols=110 Identities=9% Similarity=0.138 Sum_probs=56.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCH-H-----HHHHH------HHHHHHHHHHHHH-----------------------
Q ss_conf 99888887728999999998578111-4-----68889------9999999999999-----------------------
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIEK-K-----CRLHF------YEFMKDVHSRIIM----------------------- 113 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~~-K-----~R~HF------h~FM~~ih~~l~~----------------------- 113 (404)
+=|-|+=|+|||-|+.+....++... . ..+-| -.|...+.+.+..
T Consensus 28 v~liGpNGaGKSTLlk~l~Gll~p~~G~I~~~g~~i~~~pq~~~~~~~~tv~~~l~~~~~~~~~~~~~~~e~~~~l~l~~ 107 (246)
T cd03237 28 IGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQ 107 (246)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHH
T ss_conf 99997999769999999977878886079989820576874332577727999999886431212799999998849956
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHH-CCCEEEEECC
Q ss_conf 713112246655780789999996138799984232-0471358889999999985-4968998178
Q gi|254781047|r 114 YRKKIEFGEILESDPIPLVASSIALESRVLCFDEFM-ITNIADAIILSRLFAALFS-HGCIIVMTSN 178 (404)
Q Consensus 114 ~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF~-V~DiaDAmil~rl~~~lf~-~gv~lV~TSN 178 (404)
+..+.-..-++..----.+|..|+.+.++|.+||=- =-|+...+.+-+++..|.+ .|.++|++|-
T Consensus 108 ~~~r~~~~LSGGqkQRv~iA~aL~~~p~ilLLDEPts~LD~~~~~~i~~~i~~l~~~~~~Tvi~VtH 174 (246)
T cd03237 108 ILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174 (246)
T ss_pred HHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 7648700289859999999999841999999848987689999999999999999867989999837
No 194
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=93.29 E-value=0.076 Score=31.78 Aligned_cols=75 Identities=20% Similarity=0.315 Sum_probs=42.3
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC----------CCHHH-HHHHCCC--------C----CCCCCC
Q ss_conf 99999974887789899999999999999986135433----------32256-6431024--------6----666668
Q gi|254781047|r 9 RLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQE----------QGIFS-WLWNLRG--------I----KRKYCS 65 (404)
Q Consensus 9 ~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~----------~~~~~-~~~~~~~--------~----~~~~~~ 65 (404)
.|.++|.+ ||. .+-.+.+++++.+..+.... -.+|. .+++... . ..-...
T Consensus 5 eYL~lv~~-----~P~--v~~~A~qrl~dmI~~~G~~~~~~~~~~i~ry~~F~d~~fG~e~~i~~~V~~~k~AA~g~~~~ 77 (361)
T smart00763 5 EYLDIVKE-----DPL--VAANAHQRLLDMIGEAGVEDVVENNRGIKRYRFFDHDFFGMEEAIERFVNYFKSAAQGLEER 77 (361)
T ss_pred HHHHHHHH-----CHH--HHHHHHHHHHHHHHCCCEEEECCCCCEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999986-----929--88769999999986679188137996078550110131164899999999999998446712
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 8649988888772899999999857
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALV 90 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l 90 (404)
.|=+||+|+||.|||-|.+.+-..+
T Consensus 78 k~IllL~GPvGsGKStl~~~Lk~~l 102 (361)
T smart00763 78 KQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 5699998899887799999999999
No 195
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=93.27 E-value=0.69 Score=25.67 Aligned_cols=40 Identities=30% Similarity=0.455 Sum_probs=25.8
Q ss_pred CCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 3879998423-204713588899999999854968998178
Q gi|254781047|r 139 ESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSN 178 (404)
Q Consensus 139 ~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN 178 (404)
+.++|.+||= ---|+.....+.++++.+-++|..+|++|-
T Consensus 148 ~p~illLDEPt~gLD~~~~~~l~~~i~~l~~~g~tIi~vtH 188 (245)
T PRK03695 148 AGQLLLLDEPMNSLDVAQQSALDRLLSELCQQGIAVVMSSH 188 (245)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 88789973876678999999999999999847999999942
No 196
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=93.25 E-value=0.7 Score=25.65 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=32.9
Q ss_pred HHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 8999999613879998423-2047135888999999998549689981786
Q gi|254781047|r 130 PLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNF 179 (404)
Q Consensus 130 ~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~ 179 (404)
-.+|..++.+-++|.+||= -=-|+....-+.++++.+-+.|+.+|.+|-.
T Consensus 146 v~iAraL~~~P~illLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvl~~tHd 196 (241)
T PRK10895 146 VEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHN 196 (241)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 999999966998899958754799999999999999999649999999072
No 197
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.13 E-value=0.73 Score=25.53 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 499888887728999999998578
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
=+=|-|+=|+|||-|+++..--.+
T Consensus 26 ~~~ilGpSGsGKSTLl~li~Gl~~ 49 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999559999999976999
No 198
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.12 E-value=0.6 Score=26.09 Aligned_cols=113 Identities=19% Similarity=0.231 Sum_probs=67.9
Q ss_pred CCCCCCCEEEEE-CCCCCCHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCHHHHHH
Q ss_conf 666688649988-888772899999999857811--1468889999999999999971311----224665578078999
Q gi|254781047|r 61 RKYCSMQGIYLH-GDVGQGKSMLMNLFFALVPIE--KKCRLHFYEFMKDVHSRIIMYRKKI----EFGEILESDPIPLVA 133 (404)
Q Consensus 61 ~~~~~~kGlYL~-G~VG~GKT~LMdlFy~~l~~~--~K~R~HFh~FM~~ih~~l~~~~~~~----~~~~~~~~dpl~~va 133 (404)
..+..|-|.+|. |+-|+|||-|-..+-+.+=.. .--|+.-.+||-. | ....+-|.. +..+++ -|...+
T Consensus 592 ~dp~rPiGsFLFlGPTGVGKTElAK~LA~~LF~~e~~liriDMSEy~E~-h-sVSrLiGaPPGYVGy~eGG---~LTeaV 666 (857)
T PRK10865 592 SDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEK-H-SVSRLVGAPPGYVGYEEGG---YLTEAV 666 (857)
T ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHEEEECCHHHCCC-H-HHHHHCCCCCCCCCCCCCC---CHHHHH
T ss_conf 9999973899986898788899999999998389334256253321130-1-2767558998766757788---110999
Q ss_pred HHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHC--------------CCEEEEECCCCHHHH
Q ss_conf 999613879998423204713588899999999854--------------968998178686775
Q gi|254781047|r 134 SSIALESRVLCFDEFMITNIADAIILSRLFAALFSH--------------GCIIVMTSNFIPENL 184 (404)
Q Consensus 134 ~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~--------------gv~lV~TSN~~P~dL 184 (404)
--+-+-|+.|||++=- +.=++.-|++ +++. ++++|+|||.--+.+
T Consensus 667 --Rr~PySVvLfDEIEKA---HpdV~nilLQ-vlD~G~LtD~~Gr~vdF~NtIIImTSN~Gs~~i 725 (857)
T PRK10865 667 --RRRPYSVILLDEVEKA---HPDVFNILLQ-VLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLI 725 (857)
T ss_pred --HHCCCEEEEEHHHHHH---CHHHHHHHHH-HHCCCEEECCCCCEEEEEEEEEEECCCHHHHHH
T ss_conf --8198778863257663---8589999998-703683207999888513348996462336999
No 199
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=93.08 E-value=0.74 Score=25.49 Aligned_cols=135 Identities=24% Similarity=0.287 Sum_probs=77.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC------------------HHHHH--HHHHH--------------HH--------
Q ss_conf 49988888772899999999857811------------------14688--89999--------------99--------
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIE------------------KKCRL--HFYEF--------------MK-------- 105 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~------------------~K~R~--HFh~F--------------M~-------- 105 (404)
=+=|-|+-|||||-|+.+..--.+.. .+|++ =|.++ -.
T Consensus 33 ~~~llGpSG~GKTTlLr~iaGL~~p~~~~G~I~~~g~~v~~~~~~~R~ig~VFQ~~aLfPhltV~eNia~~L~~~~~~~~ 112 (362)
T TIGR03258 33 LLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKA 112 (362)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCEECCCCCHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHH
T ss_conf 99999999745999999997776777881799999999998998889948971798536898099999899986599999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCH---------HHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHC--CCEE
Q ss_conf 99999999713112246655780---------78999999613879998423-204713588899999999854--9689
Q gi|254781047|r 106 DVHSRIIMYRKKIEFGEILESDP---------IPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSH--GCII 173 (404)
Q Consensus 106 ~ih~~l~~~~~~~~~~~~~~~dp---------l~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~--gv~l 173 (404)
++.+++.++-...+........| --.+|..|+.+-++|++||= ---|..--.-|...+..|.++ |+++
T Consensus 113 e~~~rv~e~l~~vgL~~~~~r~P~~LSGGq~QRVAlARAL~~~P~ilLlDEP~saLD~~~r~~l~~~l~~l~~~l~~~T~ 192 (362)
T TIGR03258 113 DIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTI 192 (362)
T ss_pred HHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 99999999987789967862696678998999999999975599989981887655999999999999999997679889
Q ss_pred E-EECCC----------------------CHHHHHCCCCCH--HHHHHHHHHHH
Q ss_conf 9-81786----------------------867752387405--66898999998
Q gi|254781047|r 174 V-MTSNF----------------------IPENLYKDEINR--NVLVSFIELLE 202 (404)
Q Consensus 174 V-~TSN~----------------------~P~dLY~~GLqR--~~FlPfI~~lk 202 (404)
| .|-+. .|.++|.++-++ ..|+-...++.
T Consensus 193 i~VTHD~~EA~~laDrI~Vm~~G~i~Q~gtp~eiy~~P~~~~vA~f~G~~n~~~ 246 (362)
T TIGR03258 193 LCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGFAAEFLGAANILP 246 (362)
T ss_pred EEECCCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCCHHHHHHCCCCCCCC
T ss_conf 998999899998589999998999999818899986899848975169643255
No 200
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.04 E-value=0.68 Score=25.73 Aligned_cols=20 Identities=10% Similarity=0.109 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHCCCCCEEE
Q ss_conf 99899999998228982899
Q gi|254781047|r 318 IKRFIMLIDVFYEHKIGLII 337 (404)
Q Consensus 318 arRFI~LID~lYd~kv~Li~ 337 (404)
.|+=|.+-=+++-+.--|++
T Consensus 481 QrQRiaiARAll~~~~iliL 500 (575)
T PRK11160 481 EQRRLGIARALLHDAPLLLL 500 (575)
T ss_pred HHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999999459999998
No 201
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.04 E-value=0.75 Score=25.45 Aligned_cols=151 Identities=20% Similarity=0.205 Sum_probs=88.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCH---------------H---H------------------------HHHHHHHH
Q ss_conf 6499888887728999999998578111---------------4---6------------------------88899999
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEK---------------K---C------------------------RLHFYEFM 104 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~---------------K---~------------------------R~HFh~FM 104 (404)
.=+=|-|+=|+|||-|+..+..-++... | + |.-++.+.
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~~~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~ 108 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLF 108 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCHHHCCHHHHHHHEEEECCCCCCCCCCEEEEHHHHCCCCCCCCC
T ss_conf 79999899888999999998656788887799999724546988875618993567889999587361742677465533
Q ss_pred H--------HHHHHHHH-----HHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHH-HC
Q ss_conf 9--------99999999-----71311224665578078999999613879998423-2047135888999999998-54
Q gi|254781047|r 105 K--------DVHSRIIM-----YRKKIEFGEILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALF-SH 169 (404)
Q Consensus 105 ~--------~ih~~l~~-----~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf-~~ 169 (404)
. .+..-|.. +..+.-..-++..--.-.+|..++++.++|.+||= -=-|++...-+=.++..|- ++
T Consensus 109 ~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iAraLaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~ 188 (258)
T COG1120 109 GRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK 188 (258)
T ss_pred CCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 57887689999999998294777668551168668899999999845899788279720038777999999999999855
Q ss_pred CCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCE-EEECCCCCHHHHCCCCCCCEEEECCCHHHHHHHHHHHH
Q ss_conf 9689981786867752387405668989999985050-89804731122112367830220353022689999999
Q gi|254781047|r 170 GCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLE-IISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMDKLWA 244 (404)
Q Consensus 170 gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~-V~~l~~~~DYR~~~~~~~~~y~~p~~~~~~~~l~~~f~ 244 (404)
|.++|++.-- ++.--++|+ ++-|+.|.=+-. +. |.+--+...+.+.|.
T Consensus 189 g~tvv~vlHD------------------ln~A~ryad~~i~l~~G~i~a~----G~-----p~evlT~e~l~~Vyg 237 (258)
T COG1120 189 GLTVVMVLHD------------------LNLAARYADHLILLKDGKIVAQ----GT-----PEEVLTEENLREVYG 237 (258)
T ss_pred CCEEEEEECC------------------HHHHHHHCCEEEEEECCEEEEE----CC-----CCHHCCHHHHHHHHC
T ss_conf 9789999559------------------8899974788999979937860----59-----412159999999709
No 202
>KOG1803 consensus
Probab=93.04 E-value=0.032 Score=34.14 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 4998888877289999999985781
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
=.-|+|++|+|||.-+-....++-.
T Consensus 203 l~~I~GPPGTGKT~TlvEiI~qlvk 227 (649)
T KOG1803 203 LLIIHGPPGTGKTRTLVEIISQLVK 227 (649)
T ss_pred CEEEECCCCCCCEEEHHHHHHHHHH
T ss_conf 3575579988840439999999997
No 203
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.98 E-value=0.77 Score=25.40 Aligned_cols=19 Identities=37% Similarity=0.377 Sum_probs=16.0
Q ss_pred CCEEEEECCCCCCHHHHHH
Q ss_conf 8649988888772899999
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMN 84 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMd 84 (404)
-+=+=|-|+-|+|||-|++
T Consensus 21 G~~~aIiG~sGsGKSTLl~ 39 (261)
T cd03271 21 GVLTCVTGVSGSGKSSLIN 39 (261)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 9999998799986999999
No 204
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.87 E-value=0.38 Score=27.36 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 64998888877289999999985781
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
.=+-|-|+-|+|||-||.+..-..+.
T Consensus 27 ei~~iiGpnGaGKSTl~~~i~Gl~~p 52 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGLERP 52 (213)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 89999999997399999999759998
No 205
>KOG0740 consensus
Probab=92.86 E-value=0.047 Score=33.12 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=21.7
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 666688649988888772899999999
Q gi|254781047|r 61 RKYCSMQGIYLHGDVGQGKSMLMNLFF 87 (404)
Q Consensus 61 ~~~~~~kGlYL~G~VG~GKT~LMdlFy 87 (404)
.-..+++|+-|.|++|+|||||--..-
T Consensus 181 glr~p~rglLLfGPpgtGKtmL~~aiA 207 (428)
T KOG0740 181 GLREPVRGLLLFGPPGTGKTMLAKAIA 207 (428)
T ss_pred CCCCCCCHHHEECCCCCCHHHHHHHHH
T ss_conf 354453111200589884479999998
No 206
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=92.84 E-value=0.41 Score=27.13 Aligned_cols=106 Identities=16% Similarity=0.246 Sum_probs=59.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH-----------HHHH--HHHHHHHH-HHCCCCCCCCCCCCHHHH
Q ss_conf 864998888877289999999985781114688899-----------9999--99999999-713112246655780789
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY-----------EFMK--DVHSRIIM-YRKKIEFGEILESDPIPL 131 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh-----------~FM~--~ih~~l~~-~~~~~~~~~~~~~dpl~~ 131 (404)
-.-+-|-|+-|+|||.|+.+.....+... -++.++ .+|. .+-+.+.. +....++ ..----.
T Consensus 27 Ge~v~i~G~sGsGKSTLl~~l~Gl~~~~~-G~i~~~~~~~i~~v~Q~~~l~~~tl~e~l~~p~~~~LSG----GqkQRva 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGS-GRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSG----GEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCCCC-CEEEECCCCCEEEECCCCCCCCCCHHHHHHCCCCCCCCH----HHHHHHH
T ss_conf 99999995899988999999869876998-679976998799985646658875999963615467899----9999999
Q ss_pred HHHHHHCCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 999996138799984232-047135888999999998549689981786
Q gi|254781047|r 132 VASSIALESRVLCFDEFM-ITNIADAIILSRLFAALFSHGCIIVMTSNF 179 (404)
Q Consensus 132 va~~l~~~~~lLCfDEF~-V~DiaDAmil~rl~~~lf~~gv~lV~TSN~ 179 (404)
+|..+..+.++|.+||-- =-|+.. -..+++.|-+.|.++|+.|.+
T Consensus 102 lARal~~~p~iliLDEpTs~LD~~~---~~~l~~~l~~~~~Tvi~VtH~ 147 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEES---EDRLYQLLKELGITVISVGHR 147 (166)
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHH---HHHHHHHHHHCCCEEEEEECC
T ss_conf 9999964999999758533289999---999999999779989999434
No 207
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.80 E-value=0.073 Score=31.89 Aligned_cols=127 Identities=15% Similarity=0.114 Sum_probs=74.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHH-------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH---
Q ss_conf 8649988888772899999999857811146-------888999999999999997131122466557807899999---
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKC-------RLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASS--- 135 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~-------R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~--- 135 (404)
+...-.+|+-|+|||-+.-.|-.++.+.... --+-..++..-|-.+.+...... . .-|-+..+...
T Consensus 36 ~HAYLFsGPrGvGKTt~ArifAkaLnC~~~~~~~PCg~C~sC~~i~~g~hpDViEiDaasn---~-gID~IReLie~~~~ 111 (523)
T PRK08451 36 AHAYLFSGLRGSGKTSSARIFSRALVCEQGPSSTPCGTCAQCQAALEGRHIDIIEMDAASN---R-GIDDIRNLIEQTKY 111 (523)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCC---C-CHHHHHHHHHHHCC
T ss_conf 7158757899868899999999997599999989888788899986489998551055333---6-89999999997235
Q ss_pred --HHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf --9613879998423204713588899999999854968998178686775238740566898999998505089804
Q gi|254781047|r 136 --IALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD 211 (404)
Q Consensus 136 --l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~ 211 (404)
....++|.-+||.|--..+-|=-|=+.++.-=.+-+++.+|++ |+.| ...|..+|..+++.
T Consensus 112 ~P~~gryKV~IIDEah~Lt~~A~NALLKTLEEPP~~vvFILaTTe--p~KL-------------p~TIlSRCQ~f~Fk 174 (523)
T PRK08451 112 KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD--PLKL-------------PATILSRTQHFRFK 174 (523)
T ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCC--HHHC-------------HHHHHHHHHCCCCC
T ss_conf 886797279998260304899999999970389878379997599--4768-------------48887420311033
No 208
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.70 E-value=0.35 Score=27.59 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 4998888877289999999985781
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
=+=|-|+.|+|||-|+.+....++.
T Consensus 36 ~v~ivG~sGsGKSTLl~ll~g~~~p 60 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFLEA 60 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9999999998799999999987288
No 209
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=92.64 E-value=0.76 Score=25.42 Aligned_cols=115 Identities=19% Similarity=0.223 Sum_probs=65.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCH---------------HHHHHHHHH-----H---------------HHHHHHHH
Q ss_conf 499888887728999999998578111---------------468889999-----9---------------99999999
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEK---------------KCRLHFYEF-----M---------------KDVHSRII 112 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~---------------K~R~HFh~F-----M---------------~~ih~~l~ 112 (404)
=+=|-|+-|+|||-||.+.....+... +.++-|.+. | ..+.+.+.
T Consensus 40 iv~LiG~nGaGKSTLlr~i~Gl~~p~~G~I~~~~~~i~~~~~~i~~vfQ~~~l~~~~tV~eni~~gl~~~~~~~~~e~l~ 119 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLETPTAGDLLAGTAPLAEAQEDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALA 119 (257)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHHHCEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999899888999999996589888870898987554431100799325644767789999863214106999999999
Q ss_pred HHH-----CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHH-HCCCEEEEECCCCHH
Q ss_conf 971-----311224665578078999999613879998423-2047135888999999998-549689981786867
Q gi|254781047|r 113 MYR-----KKIEFGEILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALF-SHGCIIVMTSNFIPE 182 (404)
Q Consensus 113 ~~~-----~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf-~~gv~lV~TSN~~P~ 182 (404)
... .+....-++..----.+|..++.+-+||.+||= -=-|+...--+-.++..|. +.|+++|.+|-...+
T Consensus 120 ~vgL~~~~~~~p~~LSGGqkQRvaiAraL~~~P~lLlLDEPtsgLD~~~~~~i~~ll~~L~~e~g~TIi~vTHdl~e 196 (257)
T PRK11247 120 AVGLADRANEWPAALSGGQKQRVALARALIHRPRLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSE 196 (257)
T ss_pred HCCCCHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHH
T ss_conf 85991355369444899999999999998459999998098765799999999999999999609899998879999
No 210
>KOG1514 consensus
Probab=92.63 E-value=0.072 Score=31.90 Aligned_cols=129 Identities=13% Similarity=0.165 Sum_probs=69.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHH-------HHHHHHH----HHHHHHHHHH-HHCCCCCCCCCCCCHHHH
Q ss_conf 688649988888772899999999857811146-------8889999----9999999999-713112246655780789
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKC-------RLHFYEF----MKDVHSRIIM-YRKKIEFGEILESDPIPL 131 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~-------R~HFh~F----M~~ih~~l~~-~~~~~~~~~~~~~dpl~~ 131 (404)
..-..+||.|-+|+|||....-.-+++....+. -+|-+.. |.++...+-. +.+.. ....-.+..
T Consensus 420 ~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~----~~~~~al~~ 495 (767)
T KOG1514 420 GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGER----VTWDAALEA 495 (767)
T ss_pred CCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCHHHHHHHHHHHCCCCC----CCHHHHHHH
T ss_conf 7740799846999883212999999999877505789860798714461588999999999755574----307788999
Q ss_pred HHHHHH-----CCCCEEEEEEEEECCCHHHHHHHHHHHHHHH--CCCEEEEECCC--CHHHHHCC------CCCHHHHHH
Q ss_conf 999996-----1387999842320471358889999999985--49689981786--86775238------740566898
Q gi|254781047|r 132 VASSIA-----LESRVLCFDEFMITNIADAIILSRLFAALFS--HGCIIVMTSNF--IPENLYKD------EINRNVLVS 196 (404)
Q Consensus 132 va~~l~-----~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~--~gv~lV~TSN~--~P~dLY~~------GLqR~~FlP 196 (404)
.+..+. +...|+.+||..+-=--.--||-.+|++--. -.+++|+-+|+ -|+.+..| |+.|=-|-|
T Consensus 496 L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~p 575 (767)
T KOG1514 496 LNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQP 575 (767)
T ss_pred HHHHHCCCCCCCCCEEEEECCHHHHHCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHCCCHHHHCCCEEEECCC
T ss_conf 98654167878787799963578773520988977740776789866999951656477988543112330650551377
No 211
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=92.53 E-value=0.15 Score=29.86 Aligned_cols=45 Identities=33% Similarity=0.440 Sum_probs=26.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 4887789899999999999999986135433322566431024666666886499888887728999999
Q gi|254781047|r 16 DKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNL 85 (404)
Q Consensus 16 ~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdl 85 (404)
+==+++-.+|.++|.+.. ..|... .|--=-|-|+||+|||+.--+
T Consensus 303 ~LPF~LT~aQ~r~v~EI~---~DL~~~----------------------~pMnRLlQGDVGSGKT~VA~l 347 (721)
T TIGR00643 303 SLPFELTRAQKRVVKEIL---QDLKSD----------------------VPMNRLLQGDVGSGKTLVAAL 347 (721)
T ss_pred CCCCCCCHHHHHHHHHHH---HHHCCC----------------------CCCCCCCCCCCCCHHHHHHHH
T ss_conf 288877677899999999---861478----------------------753222110106638999999
No 212
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.42 E-value=0.85 Score=25.11 Aligned_cols=127 Identities=12% Similarity=0.102 Sum_probs=74.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHH-------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH---
Q ss_conf 86499888887728999999998578111468-------88999999999999997131122466557807899999---
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCR-------LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASS--- 135 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R-------~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~--- 135 (404)
|.+.-.+|+.|+|||-+--.|-.++.+..... -.-..+...-|-.+.+..... .. .-|-+..+.+.
T Consensus 38 aHAYLFsGPrGvGKTTlArifAkaLnC~~~~~~dpCg~C~sC~~I~~g~h~DviEIdaas---n~-gIDeIReLie~~~~ 113 (613)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAAS---NN-GVDEIRNIIDNINY 113 (613)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCC---CC-CHHHHHHHHHHHCC
T ss_conf 622775589984889999999999669999999988888789998569999868840655---57-88999999997085
Q ss_pred --HHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf --9613879998423204713588899999999854968998178686775238740566898999998505089804
Q gi|254781047|r 136 --IALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD 211 (404)
Q Consensus 136 --l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~ 211 (404)
....++|.-+||.|--..+-|=-|-++++.-=.+.+.+.+|++ |+.| ...|..||.-+++.
T Consensus 114 ~P~~gkyKV~IIDEah~Ln~~AaNALLKtLEEPP~~viFIL~Tte--p~KL-------------LpTIlSRCQrf~Fk 176 (613)
T PRK05896 114 LPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTE--FQKI-------------PLTIISRCQRYNFK 176 (613)
T ss_pred CCCCCCCEEEEECCHHHCCHHHHHHHHHHCCCCCCCCEEEEEECC--HHHC-------------CHHHHHCCCCEECC
T ss_conf 875799459998162217999999999853489878379998288--1549-------------37664035500178
No 213
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=92.27 E-value=0.5 Score=26.59 Aligned_cols=42 Identities=26% Similarity=0.235 Sum_probs=25.7
Q ss_pred CCCEEEEEEEE----ECCCHHHH-HHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 38799984232----04713588-89999999985496899817868
Q gi|254781047|r 139 ESRVLCFDEFM----ITNIADAI-ILSRLFAALFSHGCIIVMTSNFI 180 (404)
Q Consensus 139 ~~~lLCfDEF~----V~DiaDAm-il~rl~~~lf~~gv~lV~TSN~~ 180 (404)
+.+.+.+|-+. ..|.+.+. .+..|+..+-+.|+++++|+..+
T Consensus 119 ~~~~vVIDsit~l~~~~~~~~~r~~l~~l~~~lk~~g~t~l~t~e~~ 165 (231)
T pfam06745 119 GAKRVVIDSITTLFYLLKPAMAREILRRLKRVLKKLGVTAIFTSEKP 165 (231)
T ss_pred CCCEEEEECCHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf 99889997641640058899999999999999997699199998212
No 214
>KOG2227 consensus
Probab=92.24 E-value=0.51 Score=26.54 Aligned_cols=124 Identities=15% Similarity=0.185 Sum_probs=62.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHH-HHHH---------HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 688649988888772899999999857811146-8889---------999999999999971311224665578078999
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKC-RLHF---------YEFMKDVHSRIIMYRKKIEFGEILESDPIPLVA 133 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~-R~HF---------h~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va 133 (404)
..+..+|+-|-+|.|||-+|--.+++++...|. -.-+ -.-...|++.+-+..+- ++.+.|-+..+-
T Consensus 173 ~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s----~~~~~~~~~~~~ 248 (529)
T KOG2227 173 NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVS----PGTGMQHLEKFE 248 (529)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHH
T ss_conf 6676457517998654889999987403431665169985123542588999998889887428----950478999999
Q ss_pred HHHHCCCC--EEEEEEEEECCCHHHHHHHHHHHHH--HHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHH
Q ss_conf 99961387--9998423204713588899999999--854968998178686775238740566898999
Q gi|254781047|r 134 SSIALESR--VLCFDEFMITNIADAIILSRLFAAL--FSHGCIIVMTSNFIPENLYKDEINRNVLVSFIE 199 (404)
Q Consensus 134 ~~l~~~~~--lLCfDEF~V~DiaDAmil~rl~~~l--f~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~ 199 (404)
+-+.+... ||.+||+-.-.--+--.|--||++- -...+++|.--|.- || -|+|||-+.
T Consensus 249 ~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANsl--Dl------TdR~LprL~ 310 (529)
T KOG2227 249 KHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSL--DL------TDRFLPRLN 310 (529)
T ss_pred HHHHCCCCEEEEEECHHHHHHHCCCCEEEEEHHCCCCCCCEEEEEEEHHHH--HH------HHHHHHHHH
T ss_conf 987525633898721256776046531432100136776605666400135--57------777766654
No 215
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.21 E-value=0.67 Score=25.76 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 4998888877289999999985781
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
=+=|-|+-|+|||-||.+..-..+.
T Consensus 28 ~~~iiGpSGsGKSTllr~i~Gl~~p 52 (232)
T cd03300 28 FFTLLGPSGCGKTTLLRLIAGFETP 52 (232)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9999999998399999999779999
No 216
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=92.18 E-value=0.97 Score=24.74 Aligned_cols=135 Identities=19% Similarity=0.297 Sum_probs=76.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC----------------HHHHH--HHHHHHH----------------------HH
Q ss_conf 49988888772899999999857811----------------14688--8999999----------------------99
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIE----------------KKCRL--HFYEFMK----------------------DV 107 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~----------------~K~R~--HFh~FM~----------------------~i 107 (404)
=+-|-|+=|+|||-||.+..--.+.. .++.+ =|.++.+ ++
T Consensus 31 ~~~llGpsG~GKSTllr~i~Gl~~p~~G~I~i~g~~v~~~~~~~r~ig~vfQ~~~L~p~ltV~eNi~~~l~~~~~~~~e~ 110 (369)
T PRK11000 31 FVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEI 110 (369)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHH
T ss_conf 99999999736999999997799999549999999998799778786999407854789899999977887638988999
Q ss_pred HHHHHHHHCCCCCCCCCCCCH---------HHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHC-CCEEEEE
Q ss_conf 999999713112246655780---------78999999613879998423-204713588899999999854-9689981
Q gi|254781047|r 108 HSRIIMYRKKIEFGEILESDP---------IPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSH-GCIIVMT 176 (404)
Q Consensus 108 h~~l~~~~~~~~~~~~~~~dp---------l~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~-gv~lV~T 176 (404)
.++..++-............| --.+|..|+.+-++|++||= ---|..-..-+..++..|.+. |+++|..
T Consensus 111 ~~rv~~~l~~~~l~~~~~r~p~~LSGGq~QRvaiARAL~~~P~illlDEP~s~LD~~~r~~~~~~l~~l~~~~g~T~i~v 190 (369)
T PRK11000 111 NQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV 190 (369)
T ss_pred HHHHHHHHHHHCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHEEHHHHHHHHHHHHHCCEEEEE
T ss_conf 99999999863745355588746694277999999886259985884366678886665247899999999869859999
Q ss_pred CCC-----------------------CHHHHHCCCCCH--HHHH--HHHHHHH
Q ss_conf 786-----------------------867752387405--6689--8999998
Q gi|254781047|r 177 SNF-----------------------IPENLYKDEINR--NVLV--SFIELLE 202 (404)
Q Consensus 177 SN~-----------------------~P~dLY~~GLqR--~~Fl--PfI~~lk 202 (404)
+-- .|+++|.++-|+ ..|+ |-|.++.
T Consensus 191 THD~~eA~~laDrI~Vm~~G~i~q~GtP~eiy~~P~n~fVA~FiG~P~mN~l~ 243 (369)
T PRK11000 191 THDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRFVAGFIGSPKMNFLP 243 (369)
T ss_pred ECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCCHHHHHHCCCCCCCEEE
T ss_conf 08999999859999999899899994899998689985898641998400178
No 217
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=92.15 E-value=0.98 Score=24.72 Aligned_cols=51 Identities=16% Similarity=0.157 Sum_probs=34.0
Q ss_pred HHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 78999999613879998423-2047135888999999998549689981786
Q gi|254781047|r 129 IPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNF 179 (404)
Q Consensus 129 l~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~ 179 (404)
.-.+|..|+.+-+||.+||= -=-|+..+.-+..++..|-++|+.++.||-.
T Consensus 141 rv~iAraL~~~P~illlDEPt~GLDp~~~~~i~~~i~~l~~~g~tili~tH~ 192 (232)
T cd03218 141 RVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHN 192 (232)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9999999966999999889856889999999999999999589999999283
No 218
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.14 E-value=0.98 Score=24.71 Aligned_cols=160 Identities=12% Similarity=0.127 Sum_probs=82.3
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEE-CCCCCCH
Q ss_conf 970058999999997488778989999999999999998613543332256643102466666688649988-8887728
Q gi|254781047|r 1 MSLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLH-GDVGQGK 79 (404)
Q Consensus 1 m~~~~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~-G~VG~GK 79 (404)
|+++.+...|+- +.+..=-+|..++..|.....+ . + -+. -||+ |+-|+||
T Consensus 1 M~Y~aLyrkyRP----~~f~dvvgQ~~v~~~L~n~i~~---~---------------~------i~h-ayLf~GprG~GK 51 (541)
T PRK05563 1 MGYTALYREWRP----RTFEDVVGQEHITTTLKNQIIN---N---------------R------IAH-AYLFCGTRGTGK 51 (541)
T ss_pred CCCHHHHHHHCC----CCHHHHCCCHHHHHHHHHHHHC---C---------------C------CCE-EEEEECCCCCCH
T ss_conf 963878876489----9776624849999999999984---9---------------9------320-453038799589
Q ss_pred HHHHHHHHHHCCCCHHHH-------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH---HHH-----HHCCCCEEE
Q ss_conf 999999998578111468-------88999999999999997131122466557807899---999-----961387999
Q gi|254781047|r 80 SMLMNLFFALVPIEKKCR-------LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLV---ASS-----IALESRVLC 144 (404)
Q Consensus 80 T~LMdlFy~~l~~~~K~R-------~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~v---a~~-----l~~~~~lLC 144 (404)
|-.--.|-.++.+..-.- -.-.......+-.+.+... . ....++.| -.. ....++|.-
T Consensus 52 Ts~Ari~akalnc~~~~~~~pC~~C~~C~~i~~g~~~Dv~Eida--a-----s~~gvd~iR~~~~~~~~~p~~~~~Kv~I 124 (541)
T PRK05563 52 TSTAKIFAKAVNCLNPQDGEPCNECEICKKINEGLLMDVIEIDA--A-----SNNGVDDIREIIENVKYPPQEGKYKVYI 124 (541)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECC--C-----CCCCHHHHHHHHHHCEECCCCCCEEEEE
T ss_conf 99999999995799988898575148899985689887366244--4-----4478899999997610487678705999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf 8423204713588899999999854968998178686775238740566898999998505089804
Q gi|254781047|r 145 FDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD 211 (404)
Q Consensus 145 fDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~ 211 (404)
+||.|---.+-.=-|-+.++.-=.+-+++.+|-+.+ .+ +..|..+|..+.+.
T Consensus 125 iDEvhmls~~a~nallKtlEePp~~~~Filatte~~--ki-------------~~tI~SRcq~f~f~ 176 (541)
T PRK05563 125 MDEVHMLSQGAVNAFLKTLEEPPSNVIFILATTDPQ--KL-------------PITILSRCQRFDFK 176 (541)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CC-------------CHHHHHHEEEEEEE
T ss_conf 977233899999999999854877756999769844--27-------------45567421357754
No 219
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.06 E-value=0.62 Score=25.97 Aligned_cols=129 Identities=11% Similarity=0.166 Sum_probs=73.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHH------HHH-HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH--
Q ss_conf 8649988888772899999999857811146------888-9999999999999971311224665578078999999--
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKC------RLH-FYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI-- 136 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~------R~H-Fh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l-- 136 (404)
+...-+.|+.|+||+-+--.|-..+-+.... +-+ =..|....|-.++...-. +.+...|-+..+.+++
T Consensus 28 ~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~---~~~i~idqiR~L~~~~~~ 104 (329)
T PRK08058 28 AHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIESGNHPDVHLVAPD---GQSIKKDQIRYLKEEFSK 104 (329)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCC---CCCCCHHHHHHHHHHHCC
T ss_conf 61565578999889999999999973999999998878889999876999976774566---140779999999999643
Q ss_pred ---HCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf ---6138799984232047135888999999998549689981786867752387405668989999985050898047
Q gi|254781047|r 137 ---ALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS 212 (404)
Q Consensus 137 ---~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~ 212 (404)
...++|.-+||-+--..+-|=-|=+.+|.==.+-+++.+|+| |+.| ++.|..+|.++++..
T Consensus 105 ~p~~g~~KV~II~~Ae~m~~~AaNALLKtLEEPp~~t~fIL~t~~--~~~l-------------LpTI~SRCq~i~f~~ 168 (329)
T PRK08058 105 SGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGDTTAILLTEN--KHQI-------------LPTILSRCQVVEFRP 168 (329)
T ss_pred CCCCCCCEEEEEECHHHHCHHHHHHHHHHHHCCCCCCEEEEEECC--HHHH-------------HHHHHHCCEEEECCC
T ss_conf 875788679997347762999999999986468978679987299--6664-------------368863142565889
No 220
>KOG0743 consensus
Probab=91.95 E-value=0.27 Score=28.26 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=19.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 688649988888772899999999857
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALV 90 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l 90 (404)
+-.||-.||||+|+|||=+..+.-..+
T Consensus 233 awKRGYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743 233 AWKRGYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred CCCCCCEEECCCCCCHHHHHHHHHHHC
T ss_conf 500041204799998889999997205
No 221
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=91.95 E-value=0.46 Score=26.79 Aligned_cols=135 Identities=13% Similarity=0.078 Sum_probs=72.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCHHH---HHHH
Q ss_conf 886499888887728999999998578111-----4688899999999999999713--11224665578078---9999
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEK-----KCRLHFYEFMKDVHSRIIMYRK--KIEFGEILESDPIP---LVAS 134 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~-----K~R~HFh~FM~~ih~~l~~~~~--~~~~~~~~~~dpl~---~va~ 134 (404)
-|.++-++|+.|.||+-+.-.|-+.+-... ..+-. +-+....|-.++...- ..........-.++ .+.+
T Consensus 25 l~HA~Lf~Gp~G~GK~~~A~~~A~~llc~~~~~~~~~~~~-~~i~~g~HPD~~~i~~~~~~~~~k~k~~I~IdqiR~l~~ 103 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPALAQRTR-QLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHH-HHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 4206875899987899999999999837997976543388-999668998968775344445431123486999999999
Q ss_pred H-----HHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEE
Q ss_conf 9-----96138799984232047135888999999998549689981786867752387405668989999985050898
Q gi|254781047|r 135 S-----IALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIIS 209 (404)
Q Consensus 135 ~-----l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~ 209 (404)
. .....+|+-+||.+--.+.-|=-|=+.++.- ..++++|.+|+ .|+.| +..|..+|..++
T Consensus 104 ~~~~~p~~g~~KV~IId~Ad~mn~~AaNalLK~LEEP-p~~~~~iL~~~-~~~~l-------------l~TI~SRCq~~~ 168 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAINRSACNALLKTLEEP-SPGRYLWLISA-QPARL-------------PATIRSRCQRLE 168 (319)
T ss_pred HHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCC-CCCEEEEEEEC-CHHHC-------------CHHHHHCCEEEC
T ss_conf 9613720279569998066752899999999982279-98848999869-93658-------------247764850111
Q ss_pred CCCCCH
Q ss_conf 047311
Q gi|254781047|r 210 LDSGQD 215 (404)
Q Consensus 210 l~~~~D 215 (404)
+....+
T Consensus 169 ~~~p~~ 174 (319)
T PRK08769 169 FKLPPA 174 (319)
T ss_pred CCCCCH
T ss_conf 899699
No 222
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.93 E-value=0.36 Score=27.51 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 499888887728999999998578
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
=+=|-|+-|.|||-|+.++...++
T Consensus 34 ~~aiiG~NGaGKSTLl~~i~Gll~ 57 (285)
T PRK13636 34 VTAILGGNGAGKSTLFQNLNGILK 57 (285)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999809999999965988
No 223
>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Probab=91.91 E-value=0.13 Score=30.30 Aligned_cols=26 Identities=27% Similarity=0.535 Sum_probs=22.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 64998888877289999999985781
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
-.+.|+|++|+|||||...+-.-+|.
T Consensus 23 H~lLl~GpPG~GKTmlA~rl~~iLP~ 48 (207)
T pfam01078 23 HNLLMIGPPGSGKTMLAKRLPGILPP 48 (207)
T ss_pred CCEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 75897889980299999763014899
No 224
>TIGR00150 TIGR00150 conserved hypothetical protein TIGR00150; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements . .
Probab=91.84 E-value=0.15 Score=29.83 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=24.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCH
Q ss_conf 499888887728999999998578111
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEK 94 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~ 94 (404)
=+||.|++|.|||-+..-|-+.+-+..
T Consensus 30 v~~L~GDlGaGKTtl~~G~~~~LG~~~ 56 (147)
T TIGR00150 30 VVLLKGDLGAGKTTLVKGLLQGLGITG 56 (147)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEE
T ss_conf 899732346665899999998379226
No 225
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=91.83 E-value=0.64 Score=25.89 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=42.1
Q ss_pred HHHHHHHCCCCEEEEEE-EEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf 99999961387999842-32047135888999999998549689981786867
Q gi|254781047|r 131 LVASSIALESRVLCFDE-FMITNIADAIILSRLFAALFSHGCIIVMTSNFIPE 182 (404)
Q Consensus 131 ~va~~l~~~~~lLCfDE-F~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~ 182 (404)
.+|..++.+-++|++|| +-=-|+...-.+.+++..+-+.|..++.||-...+
T Consensus 136 ~la~al~~~p~lliLDEPt~GLD~~~~~~i~~~l~~l~~~g~til~~sH~l~e 188 (208)
T cd03268 136 GIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSE 188 (208)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
T ss_conf 99999856999999938876899999999999999999589999998986899
No 226
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=91.79 E-value=0.23 Score=28.66 Aligned_cols=28 Identities=36% Similarity=0.695 Sum_probs=24.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 8864998888877289999999985781
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
..-||-|-|+.|+|||||.-.+-+-+|.
T Consensus 28 ~~ggvLi~G~~GtgKStlaR~l~~iLP~ 55 (334)
T PRK13407 28 GIGGVLVFGDRGTGKSTAVRALAALLPL 55 (334)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9860899789986599999999972899
No 227
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=91.69 E-value=0.78 Score=25.34 Aligned_cols=148 Identities=18% Similarity=0.279 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEE-CCCCCCH
Q ss_conf 970058999999997488778989999999999999998613543332256643102466666688649988-8887728
Q gi|254781047|r 1 MSLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLH-GDVGQGK 79 (404)
Q Consensus 1 m~~~~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~-G~VG~GK 79 (404)
||++.+...|+- +.+..=-.|..++..|.. .|... + .---||+ |.-|+||
T Consensus 1 msy~vlark~RP----~~f~e~vGQ~~v~~~l~n---al~~~---------r-------------l~haylf~G~rGvGK 51 (816)
T PRK07003 1 MTYQVLARKWRP----KDFASLVGQEHVVRALTH---ALDGG---------R-------------LHHAYLFTGTRGVGK 51 (816)
T ss_pred CCCHHHHHHHCC----CCHHHHCCCHHHHHHHHH---HHHCC---------C-------------CCCEEEEECCCCCCH
T ss_conf 942777755089----857662384999999999---99709---------8-------------631475117898888
Q ss_pred HHHHHHHHHHCCCCH------------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH---HHH-----HHCC
Q ss_conf 999999998578111------------46888999999999999997131122466557807899---999-----9613
Q gi|254781047|r 80 SMLMNLFFALVPIEK------------KCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLV---ASS-----IALE 139 (404)
Q Consensus 80 T~LMdlFy~~l~~~~------------K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~v---a~~-----l~~~ 139 (404)
|-+--+|-.++.+.. .+-|.=..|+ .+.+.... ..+.++.+ -.. ....
T Consensus 52 Tt~aRi~Ak~lnC~~~~~~~pcg~C~~C~~i~~g~~~-----d~iEiDaA-------S~~~vd~~r~l~~~~~y~p~~~r 119 (816)
T PRK07003 52 TTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFV-----DYVEMDAA-------SNRGVDEMAALLERAVYAPVDAR 119 (816)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCC-----CEEEEECC-------CCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 8999999998678999998978775557877558877-----54786355-------43576899999986224786674
Q ss_pred CCEEEEEEEEECCCHHHHHHHHHHHHHH-------HCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf 8799984232047135888999999998-------54968998178686775238740566898999998505089804
Q gi|254781047|r 140 SRVLCFDEFMITNIADAIILSRLFAALF-------SHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD 211 (404)
Q Consensus 140 ~~lLCfDEF~V~DiaDAmil~rl~~~lf-------~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~ 211 (404)
++|..|||.| |+=+.=|..|. .+-++|.+|.. |..+ -..|-.+|.-+++.
T Consensus 120 ~KvyiiDEvH-------mls~~afnalLKtlEepP~hv~FilaTTd--~~k~-------------p~tilSRc~~f~l~ 176 (816)
T PRK07003 120 FKVYMIDEVH-------MLTNHAFNAMLKTLEEPPPHVKFILATTD--PQKI-------------PVTVLSRCLQFNLK 176 (816)
T ss_pred EEEEEEECHH-------HCCHHHHHHHHHHHCCCCCCEEEEEECCC--HHHC-------------CHHHHHHHHHCCCC
T ss_conf 4799984154-------33999999999840379866489995588--0115-------------28898777652236
No 228
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=91.68 E-value=1.1 Score=24.39 Aligned_cols=114 Identities=22% Similarity=0.266 Sum_probs=66.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC-------HHHH-------HHHH--------HHHH--------HHHHHHHHHHCC
Q ss_conf 49988888772899999999857811-------1468-------8899--------9999--------999999997131
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIE-------KKCR-------LHFY--------EFMK--------DVHSRIIMYRKK 117 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~-------~K~R-------~HFh--------~FM~--------~ih~~l~~~~~~ 117 (404)
=+=|-|+=|.|||-|+.+....++.. .+.| +++. .|+. ++...+....-.
T Consensus 32 i~~LiGpNGaGKSTLlk~I~Gl~~p~~G~I~~~~~~~igyvpq~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 111 (251)
T PRK09544 32 ILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAG 111 (251)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCEEECCCHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
T ss_conf 99999899988999999996688898608999994026204377621876218999986327665389999999873852
Q ss_pred -----CCCCCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHC-CCEEEEECCCCH
Q ss_conf -----1224665578078999999613879998423-204713588899999999854-968998178686
Q gi|254781047|r 118 -----IEFGEILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSH-GCIIVMTSNFIP 181 (404)
Q Consensus 118 -----~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~-gv~lV~TSN~~P 181 (404)
.-..-++..----.+|..++.+-++|.+||= -=-|+....-+-.++..|-+. |+.+|.+|-...
T Consensus 112 ~~~~~~~~~LSGGq~QRv~iAraL~~~P~lLiLDEPTsgLD~~~~~~i~~li~~L~~e~g~til~vtHDl~ 182 (251)
T PRK09544 112 HLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH 182 (251)
T ss_pred HHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 24326544589999999999999974999899809864689999999999999999832989999906899
No 229
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=91.67 E-value=1.1 Score=24.38 Aligned_cols=129 Identities=17% Similarity=0.160 Sum_probs=71.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHHHHH
Q ss_conf 886499888887728999999998578111468889999------9999999999713-112246655780789999996
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEF------MKDVHSRIIMYRK-KIEFGEILESDPIPLVASSIA 137 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~F------M~~ih~~l~~~~~-~~~~~~~~~~dpl~~va~~l~ 137 (404)
+.--|.|+|.-|+||-.+-....+..+-.+|- |-.. ..-+-++|+-..+ .-.+......--+ + .
T Consensus 163 s~a~VLI~GESGtGKElvAr~IH~~S~R~~~P---FVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~f-----E-~ 233 (464)
T COG2204 163 SDASVLITGESGTGKELVARAIHQASPRAKGP---FIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRF-----E-Q 233 (464)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCC---CEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCE-----E-E
T ss_conf 79978997789875899999998607445899---2563346489888777761456567677643457615-----7-7
Q ss_pred CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHC-------------CCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 13879998423204713588899999999854-------------96899817868677523874056689899999850
Q gi|254781047|r 138 LESRVLCFDEFMITNIADAIILSRLFAALFSH-------------GCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKK 204 (404)
Q Consensus 138 ~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~-------------gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~ 204 (404)
.+.=.|++||..=-.. -+=.+|+..|-++ .|.+|++||+...++-+.|..|+. |--+
T Consensus 234 A~GGTLfLDEI~~mpl---~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReD-------LyyR 303 (464)
T COG2204 234 ANGGTLFLDEIGEMPL---ELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFRED-------LYYR 303 (464)
T ss_pred CCCCEEEEECCCCCCH---HHHHHHHHHHHCCEEEECCCCCEECEEEEEEEECCCCHHHHHHCCCCHHH-------HHHH
T ss_conf 3796587323110999---99999999987070673588860000169996057789999881973788-------8865
Q ss_pred CEEEECCC
Q ss_conf 50898047
Q gi|254781047|r 205 LEIISLDS 212 (404)
Q Consensus 205 ~~V~~l~~ 212 (404)
+.|++|.-
T Consensus 304 LnV~~i~i 311 (464)
T COG2204 304 LNVVPLRL 311 (464)
T ss_pred HCCCEECC
T ss_conf 23311048
No 230
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=91.60 E-value=0.22 Score=28.80 Aligned_cols=97 Identities=23% Similarity=0.188 Sum_probs=55.0
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCC--------------CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 6666886499888887728999999998578--------------11146888999999999999997131122466557
Q gi|254781047|r 61 RKYCSMQGIYLHGDVGQGKSMLMNLFFALVP--------------IEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILES 126 (404)
Q Consensus 61 ~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~--------------~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~ 126 (404)
...+||-=+-+-|+.|+|||.||+.+..... ..+|+|+-|-+-=.++++-+-
T Consensus 34 ~~epPP~vVavvGPpgvGKtTLiksLvk~ytk~~l~~i~GPiTvvs~K~rRiTfiEc~nDi~smiD-------------- 99 (225)
T cd01882 34 PEEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITVVTGKKRRLTFIECPNDINAMID-------------- 99 (225)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEECCCHHHHHHH--------------
T ss_conf 789999699998989977889999999998544375578887999468426899974860999987--------------
Q ss_pred CHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf 80789999996138799984232047135888999999998549689981786867
Q gi|254781047|r 127 DPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPE 182 (404)
Q Consensus 127 dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~ 182 (404)
+.+| .+.-||.+|- ..+=-|---.++..|..+|..-|+.==++-|
T Consensus 100 --~AKv-----ADlVLl~iD~----s~GfEmEtfEfLnilq~hG~PkV~GVltHlD 144 (225)
T cd01882 100 --IAKV-----ADLVLLLIDA----SFGFEMETFEFLNILQVHGFPRVMGVLTHLD 144 (225)
T ss_pred --HHHH-----HHEEEEEECC----CCCEEEEHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf --8876-----4336888616----6553520899999999759994378854431
No 231
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=91.58 E-value=0.59 Score=26.12 Aligned_cols=46 Identities=20% Similarity=0.210 Sum_probs=35.2
Q ss_pred HHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 7899999961387999842320471358889999999985496899
Q gi|254781047|r 129 IPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIV 174 (404)
Q Consensus 129 l~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV 174 (404)
-+.++..+...++++.+||||=||..=--|+.+++..--..++++|
T Consensus 367 ~~~la~~l~~ry~~iLIDEFQDTd~~Q~~I~~~l~~~~~~~~LfmV 412 (1181)
T PRK10876 367 GEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWGHQPETALLLI 412 (1181)
T ss_pred HHHHHHHHHHHCCEEEEHHHCCCCHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 6999999985185644023204889999999999647998816998
No 232
>PRK08903 hypothetical protein; Validated
Probab=91.36 E-value=0.78 Score=25.35 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=44.8
Q ss_pred HHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 998537889981898787246389998999999982289-82899807897880134676531348998988745
Q gi|254781047|r 294 EIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHK-IGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLYE 367 (404)
Q Consensus 294 ~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~k-v~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~E 367 (404)
.-....+.++|+||-.++... ..-|.++++.+++++ ..|++++..||..+. +. .+=.|||.=
T Consensus 86 ~~~~~~d~l~iDDi~~i~~~~---q~~lF~l~N~~~~~~~~~ll~s~~~~p~~l~--------~~-~DL~SRl~~ 148 (227)
T PRK08903 86 DFDPRAELYAVDDVERLDDAQ---QIALFNLFNRVRAHGKTALLVAGPAAPLALD--------VR-EDLRTRLGW 148 (227)
T ss_pred HHHHCCCEEEEECCCCCCCHH---HHHHHHHHHHHHHCCCCEEEECCCCCHHHCC--------CC-HHHHHHHHC
T ss_conf 420018989996411489569---9999999999997299489971899712012--------00-899999938
No 233
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=91.21 E-value=1.2 Score=24.08 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9988888772899999999857
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALV 90 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l 90 (404)
+-|+|+.|.|||.|+-.+-..+
T Consensus 2 ~li~g~~g~GKttl~~~~~~~~ 23 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8999899998999999999998
No 234
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=91.13 E-value=0.17 Score=29.59 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 86499888887728999999998578
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
---|-+-||+|+|||||..=.---||
T Consensus 213 GHNlll~GPPGsGKTmla~r~~giLP 238 (505)
T TIGR00368 213 GHNLLLLGPPGSGKTMLASRLQGILP 238 (505)
T ss_pred CCCEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 56437678249626899987510578
No 235
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.97 E-value=0.84 Score=25.14 Aligned_cols=27 Identities=33% Similarity=0.757 Sum_probs=24.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 649988888772899999999857811
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIE 93 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~ 93 (404)
+.+-+-|+.|.|||-+|..+.+.+|..
T Consensus 26 ~nIlIsG~tGSGKTTll~al~~~i~~~ 52 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPD 52 (186)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 989998999998999999999613345
No 236
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=90.89 E-value=1.3 Score=23.89 Aligned_cols=135 Identities=14% Similarity=0.088 Sum_probs=74.9
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCH
Q ss_conf 74887789899999999999999986135433322566431024666666886499888887728999999998578111
Q gi|254781047|r 15 QDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEK 94 (404)
Q Consensus 15 ~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~ 94 (404)
....+.+-+.|..++.++.....+ .+-.++--+.|.|||++--.....+..+-
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~---------------------------~~~gvivlpTGaGKT~va~~~~~~~~~~~ 83 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRT---------------------------ERRGVIVLPTGAGKTVVAAEAIAELKRST 83 (442)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCC---------------------------CCCEEEEECCCCCHHHHHHHHHHHHCCCE
T ss_conf 235788859999999999962225---------------------------78679996799988999999999826988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCC------CCCCCCCCCCH-------HHHHHH-----HHHC-CCCEEEEEEEEECCCHH
Q ss_conf 46888999999999999997131------12246655780-------789999-----9961-38799984232047135
Q gi|254781047|r 95 KCRLHFYEFMKDVHSRIIMYRKK------IEFGEILESDP-------IPLVAS-----SIAL-ESRVLCFDEFMITNIAD 155 (404)
Q Consensus 95 K~R~HFh~FM~~ih~~l~~~~~~------~~~~~~~~~dp-------l~~va~-----~l~~-~~~lLCfDEF~V~DiaD 155 (404)
--=+|-.+.+.+-.+++...-.. .++.. ....| ++.++. +... +..+|-|||.|-.=...
T Consensus 84 Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~~~~~-~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~ 162 (442)
T COG1061 84 LVLVPTKELLDQWAEALKKFLLLNDEIGIYGGGE-KELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS 162 (442)
T ss_pred EEEECCHHHHHHHHHHHHHHCCCCCCCCEECCCC-CCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
T ss_conf 9997829999999999997348867660336872-335777489998389764155554035666759997524578477
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf 88899999999854968998178686
Q gi|254781047|r 156 AIILSRLFAALFSHGCIIVMTSNFIP 181 (404)
Q Consensus 156 Amil~rl~~~lf~~gv~lV~TSN~~P 181 (404)
+-.+...+...+. ++.=+=+||
T Consensus 163 ~~~~~~~~~~~~~----~LGLTATp~ 184 (442)
T COG1061 163 YRRILELLSAAYP----RLGLTATPE 184 (442)
T ss_pred HHHHHHHHHCCCE----EEEEECCCC
T ss_conf 9999997510310----467714872
No 237
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=90.82 E-value=0.9 Score=24.95 Aligned_cols=121 Identities=16% Similarity=0.182 Sum_probs=74.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH-----HCCC
Q ss_conf 86499888887728999999998578111468889999999999999971311224665578078999999-----6138
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI-----ALES 140 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l-----~~~~ 140 (404)
+...-..|+.|+|||-+--.|-..+-.....+-|. + ++.+... .+.+..-|-+..+-+++ ..++
T Consensus 26 ~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~-D--------~~~~~~~--~~~~I~vd~IR~l~~~~~~~p~~g~~ 94 (313)
T PRK05564 26 SHASLIVGEDGIGKSILAKEIANKILGKSEQREYV-D--------IIEYKPI--NKKSIGVDDIRNIIEEVNKKPYEGDK 94 (313)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCC-C--------EEEEECC--CCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 75043279998509999999999982899778898-6--------5886332--25699989999999998408625895
Q ss_pred CEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf 799984232047135888999999998549689981786867752387405668989999985050898047
Q gi|254781047|r 141 RVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS 212 (404)
Q Consensus 141 ~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~ 212 (404)
+|.-+||-+--..+-|=-|=+.++.=-.+-+.+.+|.| |+.| +..|..+|.++++..
T Consensus 95 KV~II~~ae~m~~~AaNALLKtLEEPP~~t~fIL~t~~--~~~l-------------LpTI~SRCQ~~~f~~ 151 (313)
T PRK05564 95 KVIIIYKSEKMTEQAQNAFLKTIEEPPKGVFIILLCEN--LEQI-------------LDTIKSRCQIYKLNR 151 (313)
T ss_pred EEEEECCHHHHCHHHHHHHHHCCCCCCCCEEEEEEECC--HHHC-------------CCHHHCCCEEEECCC
T ss_conf 69998077775899999984550368998589986498--3547-------------577870653566899
No 238
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=90.58 E-value=0.18 Score=29.43 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 864998888877289999999985781
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
-|=+=|+.+.|+|||+||-++.+..+.
T Consensus 153 GQRiGIFA~aG~GKSTLL~~i~~g~~A 179 (430)
T TIGR02546 153 GQRIGIFAGAGVGKSTLLGMIARGASA 179 (430)
T ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCC
T ss_conf 530578708886166899998618988
No 239
>KOG0989 consensus
Probab=90.53 E-value=0.99 Score=24.70 Aligned_cols=126 Identities=17% Similarity=0.207 Sum_probs=70.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCHHHHHHHHHH------
Q ss_conf 49988888772899999999857811--14688899999999999999--713112246655780789999996------
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIE--KKCRLHFYEFMKDVHSRIIM--YRKKIEFGEILESDPIPLVASSIA------ 137 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~--~K~R~HFh~FM~~ih~~l~~--~~~~~~~~~~~~~dpl~~va~~l~------ 137 (404)
-.-.||++|+|||=---+|-..+-.+ .+.|+- .++. .+|.. ...--+.-.++-..
T Consensus 59 ~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl----------~lnaSderGis-----vvr~Kik~fakl~~~~~~~~ 123 (346)
T KOG0989 59 HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVL----------ELNASDERGIS-----VVREKIKNFAKLTVLLKRSD 123 (346)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHH----------HHCCCCCCCCC-----CHHHHHCCHHHHHHCCCCCC
T ss_conf 0786689998676899999998557423555424----------31366001431-----00665237998750255656
Q ss_pred ----CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf ----1387999842320471358889999999985496899817868677523874056689899999850508980473
Q gi|254781047|r 138 ----LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSG 213 (404)
Q Consensus 138 ----~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~ 213 (404)
.-++++-|||-+----.----|.|.++. +.+.++.|.--|+.- .| |.-|..+|.-+....-
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~-~s~~trFiLIcnyls-ri-------------i~pi~SRC~KfrFk~L 188 (346)
T KOG0989 124 GYPCPPFKIIILDECDSMTSDAQAALRRTMED-FSRTTRFILICNYLS-RI-------------IRPLVSRCQKFRFKKL 188 (346)
T ss_pred CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHC-CCCCEEEEEECCCHH-HC-------------CHHHHHHHHHHCCCCC
T ss_conf 78898632899741645309999999999862-546659999738856-47-------------7287746777128876
Q ss_pred CH----HHHCCCCC
Q ss_conf 11----22112367
Q gi|254781047|r 214 QD----YRRKEQSI 223 (404)
Q Consensus 214 ~D----YR~~~~~~ 223 (404)
.| +|+..+..
T Consensus 189 ~d~~iv~rL~~Ia~ 202 (346)
T KOG0989 189 KDEDIVDRLEKIAS 202 (346)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 44789999999988
No 240
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128 The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation.
Probab=90.49 E-value=0.26 Score=28.42 Aligned_cols=92 Identities=17% Similarity=0.238 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHCC---EEEECCCCCCCC-----CCHHHHHHHHHHHHHHHCCCCCE-EEECCCCHHHHCCCCCCCCCHH
Q ss_conf 24689999985378---899818987872-----46389998999999982289828-9980789788013467653134
Q gi|254781047|r 287 LSANDFVEIANRFD---VVIINDIPLLKE-----DRKDWIKRFIMLIDVFYEHKIGL-IISSEENIEDLFPYKLRKGAFE 357 (404)
Q Consensus 287 lg~~DYi~Ia~~f~---ti~I~~VP~l~~-----~~~d~arRFI~LID~lYd~kv~L-i~sa~~~~~~L~~~~~~~~~F~ 357 (404)
.+..-=++|..+.+ |+++|+.|.|.. +-.-++|-|- +|-+ =+-+.+.++.+| |+.. ++-+
T Consensus 439 ~A~~~lL~L~pn~~RRiW~i~DELPsLHkLp~L~~~~AE~RKFG---------GC~vlG~QS~aQL~~IY-G~~~-GA~~ 507 (613)
T TIGR02759 439 IASRSLLSLAPNDDRRIWFIMDELPSLHKLPDLAETIAEVRKFG---------GCYVLGIQSFAQLEKIY-GQNA-GAAT 507 (613)
T ss_pred HHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHH---------HHHHHHHCCHHHHHHHC-CCCH-HHHH
T ss_conf 99988734688999727888732335445510453520000324---------68988712367765423-7714-5899
Q ss_pred -HH----HHHHHHHHHCCHHHHHHCCCCCCHHHHHHCCCC
Q ss_conf -89----989887452427889724442693355425863
Q gi|254781047|r 358 -IQ----RTVSRLYEMFSAQYIGKNKIIIDACKILLSNKS 392 (404)
Q Consensus 358 -f~----Rt~SRL~EMqS~~yl~~~~~~~~~~~~~~~~~~ 392 (404)
++ |..=|.-+-+-.+|+.+. +|+.++.-++|+
T Consensus 508 l~dllnTr~fFR~P~~~~A~~~s~~---lGe~EI~~~~E~ 544 (613)
T TIGR02759 508 LFDLLNTRFFFRSPSAKMAKIVSED---LGEQEIEESKEN 544 (613)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH---HCHHHHHHHHCC
T ss_conf 9977765676507888799999984---167889986137
No 241
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.42 E-value=1.4 Score=23.78 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 499888887728999999998578
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
=+-|-|+=|+|||-|+.+..-.++
T Consensus 30 ~vaiiG~nGsGKSTLl~~l~Gll~ 53 (275)
T PRK13639 30 MIAILGPNGAGKSTLFLHFNGILK 53 (275)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999649999999973989
No 242
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=90.41 E-value=1.5 Score=23.62 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 499888887728999999998578
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
=+=|-|+=|.|||-||++..-..+
T Consensus 28 i~~liGpNGaGKSTL~~~i~Gl~~ 51 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999409999999977999
No 243
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=90.32 E-value=0.42 Score=27.05 Aligned_cols=133 Identities=11% Similarity=0.111 Sum_probs=78.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHH-----HH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH--
Q ss_conf 88649988888772899999999857811146-----88-89999999999999971311224665578078999999--
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKC-----RL-HFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI-- 136 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~-----R~-HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l-- 136 (404)
-|-++.++|+.|.||+-+...|-..+-+.... .- .-+-|...-|-.+|...-...+ ....-|-+..+.+.+
T Consensus 24 l~HA~L~~g~~G~Gk~~la~~la~~LlC~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~pe~~~-k~I~vd~IR~l~~~~~~ 102 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSHALLCQNYQSEACGFCHSCELMKSGNHPDLHVIKPEKEG-KSITVEQIRQCNRLAQE 102 (319)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCC-CCCCHHHHHHHHHHHHH
T ss_conf 63067667999857999999999998089999998877877999875899982366123356-76879999999999754
Q ss_pred ---HCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf ---61387999842320471358889999999985496899817868677523874056689899999850508980473
Q gi|254781047|r 137 ---ALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSG 213 (404)
Q Consensus 137 ---~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~ 213 (404)
.+.++|+.+|+-+--..+-|=-|=+.+|.= ..+++++.+|+.+ +.| +..|..+|..+++...
T Consensus 103 ~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEP-p~~t~fiL~t~~~-~~l-------------l~TI~SRCq~~~l~~p 167 (319)
T PRK06090 103 SSQLGGYRLFVIEPADAMNESASNALLKTLEEP-APNCLFLLVTHNQ-KRL-------------LPTIVSRCQQWVVTPP 167 (319)
T ss_pred CCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCC-CCCEEEEEEECCH-HHC-------------CCCHHHCCCCCCCCCC
T ss_conf 521069369998144434999999999984289-9883899876851-208-------------6418761445028995
No 244
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=89.70 E-value=0.34 Score=27.67 Aligned_cols=129 Identities=20% Similarity=0.304 Sum_probs=83.8
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH---HHHHHHHHHH--HHHCCCCCCCCCCCCHHHHHHHHHHCC-CC-E
Q ss_conf 988888772899999999857811146888999---9999999999--971311224665578078999999613-87-9
Q gi|254781047|r 70 YLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYE---FMKDVHSRII--MYRKKIEFGEILESDPIPLVASSIALE-SR-V 142 (404)
Q Consensus 70 YL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~---FM~~ih~~l~--~~~~~~~~~~~~~~dpl~~va~~l~~~-~~-l 142 (404)
-+-|++|+|||=+.-=+-..+-...|-==-++. |-+++=..|. ++||.- +.=|+.|+++|.++ -. |
T Consensus 233 l~VGEPGVGKTAI~EGLA~~I~~~~kvPe~Lkn~~IY~LDmG~LLAGTKYRGDF-------E~RLK~V~~Ei~~~~~anI 305 (774)
T TIGR02639 233 LLVGEPGVGKTAIVEGLAQRIAEGQKVPEVLKNAKIYSLDMGTLLAGTKYRGDF-------EERLKAVVSEIEKEPNANI 305 (774)
T ss_pred CEECCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECHHHHHHHCCCCCHH-------HHHHHHHHHHHHCCCCCCE
T ss_conf 204488864489999999986415646700247834540434564102454247-------8999999999852899954
Q ss_pred EEEEEEEECCC-----HHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 99842320471-----358889999999985496899817868677523874056689899999850508980473
Q gi|254781047|r 143 LCFDEFMITNI-----ADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSG 213 (404)
Q Consensus 143 LCfDEF~V~Di-----aDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~ 213 (404)
|+|||-|--== +-+|=-++||+-.+..|.+=.+=|-+.-+ |++=.-+|+ .|-+||.=++++.+
T Consensus 306 LFIDEIHTIVGAGATSGGsmDASNLLKPaL~~G~iRCIGsTTy~E--Y~~~FeKDr------ALsRRFQKIDv~EP 373 (774)
T TIGR02639 306 LFIDEIHTIVGAGATSGGSMDASNLLKPALASGKIRCIGSTTYEE--YKNHFEKDR------ALSRRFQKIDVGEP 373 (774)
T ss_pred EEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCHHH--HHCHHHCCC------CCCCCCCEECCCCC
T ss_conf 664110103317878751552443211253078778622652486--411101020------21654233117957
No 245
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=89.64 E-value=1.6 Score=23.33 Aligned_cols=74 Identities=22% Similarity=0.169 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCH-----------HHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHH-
Q ss_conf 99999999999999713112246655780-----------789999996138799984232047135888999999998-
Q gi|254781047|r 100 FYEFMKDVHSRIIMYRKKIEFGEILESDP-----------IPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALF- 167 (404)
Q Consensus 100 Fh~FM~~ih~~l~~~~~~~~~~~~~~~dp-----------l~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf- 167 (404)
++++..++.+++...+++.+.- .-.|- =+.++..+-.+++.+.+||||=||+.-=-|+.+|+....
T Consensus 330 l~~l~~~~~~~~~~~K~~r~~l--dFdDl~~~~~~lL~~~~~~l~~~lr~~~~~iLIDEfQDT~~~Q~~Il~~l~~~~~~ 407 (1139)
T COG1074 330 LLKLLEELIERYDAEKRQRNAL--DFDDLIHRLAKLLTSEGEELAESLREQYPHILIDEFQDTDPQQWRILSRLFAGFKA 407 (1139)
T ss_pred HHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 9999999999999999885778--98999999999984583999999984798588740345998899999999725667
Q ss_pred -HCCCEEEE
Q ss_conf -54968998
Q gi|254781047|r 168 -SHGCIIVM 175 (404)
Q Consensus 168 -~~gv~lV~ 175 (404)
++++++|.
T Consensus 408 ~~~~lF~VG 416 (1139)
T COG1074 408 GNRTLFLVG 416 (1139)
T ss_pred CCCCEEEEC
T ss_conf 785079974
No 246
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=89.61 E-value=0.34 Score=27.61 Aligned_cols=132 Identities=14% Similarity=0.148 Sum_probs=75.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHH-------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH-
Q ss_conf 86499888887728999999998578111468-------8899999999999999713112246655780789999996-
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCR-------LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIA- 137 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R-------~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~- 137 (404)
|-..-++|+.|+||+-+...|-..+-+....- -.-+-+....|-.+|...-...+ ....-|-+..+.+.+.
T Consensus 22 ~HA~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~~~HPD~~~i~pe~~~-~~I~IdqIR~l~~~~~~ 100 (328)
T PRK05707 22 AHAYLLHGPAGIGKRALAERLAAFLLCEAPQGGGACGSCKGCQLLAAGSHPDNFVLEPEEAD-KPIKVDQVRELVSFVVQ 100 (328)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCC-CCCCHHHHHHHHHHHHH
T ss_conf 20464479998679999999999984899999899988889999875899987998426667-76979999999999831
Q ss_pred ----CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf ----1387999842320471358889999999985496899817868677523874056689899999850508980473
Q gi|254781047|r 138 ----LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSG 213 (404)
Q Consensus 138 ----~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~ 213 (404)
...+|..+|+.+--..+-|=-|=+.+|.==. ++++|..|+. |+.| ...|..+|.++.+...
T Consensus 101 ~~~~g~~KV~iI~~Ae~m~~~AaNALLKtLEEPp~-~t~fiL~t~~-~~~l-------------LpTI~SRCq~~~~~~p 165 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSG-QTVLLLISHQ-PSRL-------------LPTIKSRCQQLACPLP 165 (328)
T ss_pred CCCCCCCEEEEEEHHHHHCHHHHHHHHHHHHCCCC-CEEEEEEECC-HHHC-------------HHHHHHCCEEEECCCC
T ss_conf 76678957999502877389999999998507898-7599986099-3448-------------2588741413348998
No 247
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=89.53 E-value=1.7 Score=23.17 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 64998888877289999999985781
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
.=+=|-|+-|+|||-|+.+..-.++.
T Consensus 26 E~v~iiG~nGaGKSTLl~~i~Gll~p 51 (233)
T PRK10771 26 EQVAILGPSGAGKSTLLNLIAGFLTP 51 (233)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 89999999998199999999659999
No 248
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=89.46 E-value=1.7 Score=23.14 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=15.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 49988888772899999999
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFF 87 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy 87 (404)
.+-++++.|.|||+.+-+..
T Consensus 2 ~~lv~~ptGsGKT~~~~~~~ 21 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPI 21 (144)
T ss_pred CEEEECCCCCHHHHHHHHHH
T ss_conf 99998899717999999999
No 249
>PRK04040 adenylate kinase; Provisional
Probab=89.39 E-value=0.65 Score=25.87 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=36.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8649988888772899999999857811146888999999999999
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRI 111 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l 111 (404)
++=+++-|-+|+|||-+++..-+-++... +-+-|-++|.++-.+.
T Consensus 2 ~k~VvvtGiPGvGKTTv~~~~~~~l~~~~-~~vn~G~~M~e~A~~~ 46 (189)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDY-KIVNFGDVMLEVAKEE 46 (189)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEHHHHHHHHHHHC
T ss_conf 41899975898878999999999723587-5986779999999981
No 250
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=89.35 E-value=0.83 Score=25.19 Aligned_cols=42 Identities=31% Similarity=0.434 Sum_probs=25.8
Q ss_pred CCCEEEEECCCCCCHHHHHHH-HHHH----------CCCCHHHHHHHHHHHHH
Q ss_conf 886499888887728999999-9985----------78111468889999999
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNL-FFAL----------VPIEKKCRLHFYEFMKD 106 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdl-Fy~~----------l~~~~K~R~HFh~FM~~ 106 (404)
.|.---|-|+||+|||.+--+ .+.+ +|+.==.+-||..|-..
T Consensus 277 ~~m~rllqGDVGsGKT~va~~a~~~~~~~g~q~a~maPTeiLa~Qh~~~~~~~ 329 (677)
T PRK10917 277 KPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYRNLKKW 329 (677)
T ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf 54277732876788899999999999981994899876799999999999987
No 251
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=89.20 E-value=1.3 Score=24.03 Aligned_cols=44 Identities=11% Similarity=0.029 Sum_probs=24.7
Q ss_pred HHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 999998537889981898787246389998999999982289828998
Q gi|254781047|r 291 DFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIIS 338 (404)
Q Consensus 291 DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~s 338 (404)
+--.+...|+|.+=++=..++ --.|.=|.+.=++|.+---|++.
T Consensus 583 ~I~~lp~g~~t~i~e~G~~LS----gGqrQri~lARAl~~~p~ililD 626 (694)
T TIGR03375 583 FVRRHPDGLDMQIGERGRSLS----GGQRQAVALARALLRDPPILLLD 626 (694)
T ss_pred HHHHCCCCCCCEECCCCCCCC----HHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 997185667877468999468----99999999999995799989997
No 252
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=89.12 E-value=0.51 Score=26.52 Aligned_cols=128 Identities=11% Similarity=0.116 Sum_probs=77.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHH------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH-----H
Q ss_conf 49988888772899999999857811146------888999999999999997131122466557807899999-----9
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKC------RLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASS-----I 136 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~------R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~-----l 136 (404)
.--..|+-|+|||.+--.|-.++.+...- --.-..++...|-.++...-. +.+..-|-+..+..+ .
T Consensus 41 AyLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~~~cg~C~~C~~i~~g~hpDv~~i~p~---~~~i~id~iR~l~~~~~~~p~ 117 (395)
T PRK07940 41 AWLFTGPPGSGRSNAARAFAAALQCTDPGVPGCGECRACRTVLAGTHPDVRVVVPE---GLSIGVDEVREIVQIAARRPT 117 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECC---CCCCCHHHHHHHHHHHHHCCC
T ss_conf 37636899878899999999996699999999987878999876899871898268---776889999999999852730
Q ss_pred HCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 61387999842320471358889999999985496899817868677523874056689899999850508980473
Q gi|254781047|r 137 ALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSG 213 (404)
Q Consensus 137 ~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~ 213 (404)
...++|.-+||.+--...-|=-|=+.++.==.+-+.|.+|+| |+.| + ..|..+|..+++...
T Consensus 118 ~~~~kv~ii~~a~~m~~~a~NalLKtLEEPp~~~~fiL~t~~--~~~l----------l---pTI~SRcq~~~f~~~ 179 (395)
T PRK07940 118 TGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS--VEDV----------L---PTIRSRCRHVALRTP 179 (395)
T ss_pred CCCCEEEEEECHHHHCHHHHHHHHHHHCCCCCCEEEEEEECC--HHHH----------H---HHHHHHHEECCCCCC
T ss_conf 379559998077874899999999852178888699987399--7874----------4---688744000237999
No 253
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=89.12 E-value=1.8 Score=22.99 Aligned_cols=112 Identities=18% Similarity=0.101 Sum_probs=55.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCH-H-HH--HHH---------------HHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 86499888887728999999998578111-4-68--889---------------99999999999997131122466557
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEK-K-CR--LHF---------------YEFMKDVHSRIIMYRKKIEFGEILES 126 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~-K-~R--~HF---------------h~FM~~ih~~l~~~~~~~~~~~~~~~ 126 (404)
+.=..|.|+=|+|||=++|+..=.+-.+. + +| .++ -.++.+...-+ .++....-.++.+
T Consensus 22 ~~~~~ivG~nGsGKSni~~ai~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~a~v~~~~~~~~~~v--~qg~~~~lLSGGE 99 (178)
T cd03239 22 NSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLV--LQGKVEQILSGGE 99 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC--CCCCHHHCCCCCH
T ss_conf 98179989998877899999999986642765200135432443556744236799998754044--1244100167525
Q ss_pred CHHHHHHHHH----HCCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHHCC-CEEEEECCC
Q ss_conf 8078999999----6138799984232-047135888999999998549-689981786
Q gi|254781047|r 127 DPIPLVASSI----ALESRVLCFDEFM-ITNIADAIILSRLFAALFSHG-CIIVMTSNF 179 (404)
Q Consensus 127 dpl~~va~~l----~~~~~lLCfDEF~-V~DiaDAmil~rl~~~lf~~g-v~lV~TSN~ 179 (404)
-.+-.+|--+ .+...+.++||.. --|.+....+.+++..+.+++ -++|+|=|.
T Consensus 100 ksl~alal~~ai~~~~p~p~~iLDEvdAaLD~~N~~r~~~~i~el~~~~sQfIiITH~~ 158 (178)
T cd03239 100 KSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK 158 (178)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 89999999999971389966998276554798899999999999973899899998689
No 254
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=89.02 E-value=0.19 Score=29.24 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=25.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 6668864998888877289999999985781
Q gi|254781047|r 62 KYCSMQGIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 62 ~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
.+..|-=+=+||..|+|||++-.+.-+++-.
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~vs~liA~~Ly~ 79 (127)
T pfam06309 49 KPRKPLVLSFHGWTGTGKNFVAEIIADNLYR 79 (127)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999748870189998798999999999875
No 255
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=88.85 E-value=1.8 Score=23.05 Aligned_cols=115 Identities=28% Similarity=0.359 Sum_probs=54.6
Q ss_pred CCEEEEECCCCCCHHHHHHHH----HHH-------CCCCHHHHHHHHHHHHHHHH-HHH--HHHCCCCCCCCCCCCHHHH
Q ss_conf 864998888877289999999----985-------78111468889999999999-999--9713112246655780789
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLF----FAL-------VPIEKKCRLHFYEFMKDVHS-RII--MYRKKIEFGEILESDPIPL 131 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlF----y~~-------l~~~~K~R~HFh~FM~~ih~-~l~--~~~~~~~~~~~~~~dpl~~ 131 (404)
|.-=-|-|+||+|||+.--+- +++ +|+.==-+-||+.|..-.-. -+. -+-+...+ ...+.-+..
T Consensus 283 ~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kg--k~r~~~l~~ 360 (677)
T COG1200 283 PMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKG--KARKEILEQ 360 (677)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH--HHHHHHHHH
T ss_conf 667875267677789999999999987288168866379999999999998766519748986446650--679999998
Q ss_pred HHHH---HHCCCCEEEEEEEEECCCHHHHH--------HHHHHHHHHHCCC----EEEEECCCCHHHH
Q ss_conf 9999---96138799984232047135888--------9999999985496----8998178686775
Q gi|254781047|r 132 VASS---IALESRVLCFDEFMITNIADAII--------LSRLFAALFSHGC----IIVMTSNFIPENL 184 (404)
Q Consensus 132 va~~---l~~~~~lLCfDEF~V~DiaDAmi--------l~rl~~~lf~~gv----~lV~TSN~~P~dL 184 (404)
+++. +.=.++=|+-|+.+-+|.|=++| --|+ .|.++|. +||+|--=-|.-|
T Consensus 361 l~~G~~~ivVGTHALiQd~V~F~~LgLVIiDEQHRFGV~QR~--~L~~KG~~~Ph~LvMTATPIPRTL 426 (677)
T COG1200 361 LASGEIDIVVGTHALIQDKVEFHNLGLVIIDEQHRFGVHQRL--ALREKGEQNPHVLVMTATPIPRTL 426 (677)
T ss_pred HHCCCCCEEEECCHHHHCCEEECCEEEEEEECCCCCCHHHHH--HHHHHCCCCCCEEEEECCCCHHHH
T ss_conf 747998979972212204504420238997252102299999--999737899967999579850788
No 256
>KOG2170 consensus
Probab=88.70 E-value=2 Score=22.80 Aligned_cols=120 Identities=17% Similarity=0.135 Sum_probs=57.3
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCH--HHHH-HHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 6666886499888887728999999998578111--4688-899---999999999999713112246655780789999
Q gi|254781047|r 61 RKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEK--KCRL-HFY---EFMKDVHSRIIMYRKKIEFGEILESDPIPLVAS 134 (404)
Q Consensus 61 ~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~--K~R~-HFh---~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~ 134 (404)
+.+..|-=|=+||..|+||++.-.+.-+.+--.. .-.+ ||+ +|=.. +.+..++.+ --..|..
T Consensus 105 ~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~--~~ie~Yk~e----------L~~~v~~ 172 (344)
T KOG2170 105 PNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA--SKIEDYKEE----------LKNRVRG 172 (344)
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCH--HHHHHHHHH----------HHHHHHH
T ss_conf 9999875898308998756489999999987511256268876554159976--789999999----------9999999
Q ss_pred HHH-CCCCEEEEEEEEECCCHHHHHHHHHHHHHH------HCCCEEEEECCCCHH-------HHHCCCCCHH
Q ss_conf 996-138799984232047135888999999998------549689981786867-------7523874056
Q gi|254781047|r 135 SIA-LESRVLCFDEFMITNIADAIILSRLFAALF------SHGCIIVMTSNFIPE-------NLYKDEINRN 192 (404)
Q Consensus 135 ~l~-~~~~lLCfDEF~V~DiaDAmil~rl~~~lf------~~gv~lV~TSN~~P~-------dLY~~GLqR~ 192 (404)
... -...|.-|||..--..+=-=-|+.+++... -+..+.|.-||.--+ +.+++|..|+
T Consensus 173 ~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~g~~re 244 (344)
T KOG2170 173 TVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENARNGKPRE 244 (344)
T ss_pred HHHHCCCCEEEECHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 998557754873105435876999876663046321355455148999717861477999999997479756
No 257
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=88.65 E-value=2 Score=22.78 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=19.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 8864998888877289999999985781
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
+..-+-|-|+-|.|||-|.++...-.+.
T Consensus 354 ~Ge~vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 354 PGEKVAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 8987888558888578999999861588
No 258
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=88.59 E-value=2 Score=22.76 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 6499888887728999999998578
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
.=+-|-|+-|+|||-|+.+...-++
T Consensus 34 e~~~i~G~sGsGKSTLlk~i~gl~~ 58 (225)
T PRK10247 34 EFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 6999999999999999999964668
No 259
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=88.44 E-value=0.58 Score=26.18 Aligned_cols=28 Identities=39% Similarity=0.577 Sum_probs=24.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 8649988888772899999999857811
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIE 93 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~ 93 (404)
-|-+.+-|++|+|||||-.++-+.+|.+
T Consensus 50 rrhvlliG~PGtGKSmlakam~elLpk~ 77 (637)
T PRK13765 50 RRHVMLIGSPGTGKSMLAKAMAELLPKE 77 (637)
T ss_pred HCCEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 3738986899987999999999757988
No 260
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=88.36 E-value=2.1 Score=22.66 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=33.8
Q ss_pred HHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf 999999613879998423-204713588899999999854968998178686
Q gi|254781047|r 131 LVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIP 181 (404)
Q Consensus 131 ~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P 181 (404)
.+|..++.+-++|++||= ---|+...-.+..++..+-+.|.+++.||...-
T Consensus 146 ~la~al~~~P~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~til~~sH~l~ 197 (218)
T cd03266 146 AIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ 197 (218)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 9999986699899997987676999999999999999857999999898789
No 261
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=88.17 E-value=0.57 Score=26.24 Aligned_cols=44 Identities=32% Similarity=0.289 Sum_probs=30.1
Q ss_pred CCCEEEEEEE-EE----CCCHH-HHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf 3879998423-20----47135-888999999998549689981786867
Q gi|254781047|r 139 ESRVLCFDEF-MI----TNIAD-AIILSRLFAALFSHGCIIVMTSNFIPE 182 (404)
Q Consensus 139 ~~~lLCfDEF-~V----~DiaD-Amil~rl~~~lf~~gv~lV~TSN~~P~ 182 (404)
+.+.+.+|=+ .+ .|... =--+-+|+..|-..|++.++||-...+
T Consensus 123 ~~~RvViDSlt~l~~~~~~~~~~R~~l~~L~~~l~~~g~T~llt~E~~~~ 172 (501)
T PRK09302 123 KAKRVVIDSIEALFQQYDNPAVVRRELFRLFAWLKQKGVTAVMTGERGDE 172 (501)
T ss_pred CCCEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 99999999978998763587899999999999998779779998756666
No 262
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=88.07 E-value=0.5 Score=26.57 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 4998888877289999999985
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFAL 89 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~ 89 (404)
=|.|.|..|.|||+|+.-+...
T Consensus 2 ~i~i~G~aG~GKTtll~kl~~~ 23 (165)
T pfam05729 2 TVILQGEAGSGKTTLLQKLALL 23 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999827989899999999999
No 263
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=87.89 E-value=2.2 Score=22.48 Aligned_cols=27 Identities=26% Similarity=0.564 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 886499888887728999999998578
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
+-.=+-|-|+-|+|||-||.+....++
T Consensus 36 ~Ge~~~l~GpNGaGKTTLlr~l~Gl~~ 62 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 898999999999879999999976977
No 264
>pfam10236 DAP3 Mitochondrial ribosomal death-associated protein 3. This is a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=87.83 E-value=0.44 Score=26.91 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=20.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 88649988888772899999999857
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALV 90 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l 90 (404)
+...+.|+|+.|+|||++|.-.-..+
T Consensus 22 ~~~r~vL~G~~GsGKS~~L~q~v~~A 47 (274)
T pfam10236 22 KVVRFVLTGERGSGKSVLLAQAMAYA 47 (274)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 95189988979977999999999999
No 265
>pfam02367 UPF0079 Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop.
Probab=87.81 E-value=0.65 Score=25.84 Aligned_cols=88 Identities=18% Similarity=0.298 Sum_probs=54.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH-HCCCCEEEE
Q ss_conf 6499888887728999999998578111468889999999999999971311224665578078999999-613879998
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI-ALESRVLCF 145 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l-~~~~~lLCf 145 (404)
.=++|.|+.|.|||.+...+..++..... + - -|-=.+++.. ..+..+.=+
T Consensus 16 ~vi~L~G~LGaGKTtfvr~i~~~lg~~~~--V---------~------------------SPTF~lv~~Y~~~~~~i~H~ 66 (123)
T pfam02367 16 DVVLLSGDLGAGKTTFVRGLAKGLGITGN--V---------T------------------SPTFTLVNVYEPGKLPLYHY 66 (123)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCC--C---------C------------------CCCEEEEEEECCCCCEEEEE
T ss_conf 79999888778899999999998599887--3---------7------------------99558899970899639999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 423204713588899999999854968998178686775
Q gi|254781047|r 146 DEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404)
Q Consensus 146 DEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404)
|=.-+.+..++--++ +.+.+...++++|==..+.++-|
T Consensus 67 DlYRl~~~~e~~~lg-~~e~~~~~~i~~IEWpe~~~~~l 104 (123)
T pfam02367 67 DLYRLEDPEELELLG-ILDYALEDGIILVEWPERLPEIL 104 (123)
T ss_pred EEECCCCHHHHHHCC-CHHHHCCCCEEEEECCHHHHHHC
T ss_conf 833269977898778-65662699899999923322008
No 266
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=87.78 E-value=2.2 Score=22.44 Aligned_cols=148 Identities=10% Similarity=0.073 Sum_probs=76.6
Q ss_pred CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC--CCH
Q ss_conf 138799984232047135888999999998549689981786867752387405668989999985050898047--311
Q gi|254781047|r 138 LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS--GQD 215 (404)
Q Consensus 138 ~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~--~~D 215 (404)
..++|.-+||-+--...-|--|-++++.--.+-+++++|.+ |+.| +..|..+|..+++.. ..|
T Consensus 140 ~~~kv~Iid~ad~m~~~aaNALLK~LEEPp~~~~fiLit~~--~~~l-------------l~TI~SRCq~~~f~pL~~~d 204 (352)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHS--SGRL-------------LPTIRSRCQPISLKPLDDDE 204 (352)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC--HHHC-------------HHHHHHHCCCCCCCCCCHHH
T ss_conf 88069998187874699999999985348987489988699--7777-------------68999743321488939899
Q ss_pred HH--HCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCHHHHHHHH-CCHHHH
Q ss_conf 22--112367830220353022689999999860444467763276368089961220211110199985210-246899
Q gi|254781047|r 216 YR--RKEQSILPIYMTPLNSYNRVLMDKLWAHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRP-LSANDF 292 (404)
Q Consensus 216 YR--~~~~~~~~~y~~p~~~~~~~~l~~~f~~l~~~~~~~~~~i~v~~gR~i~v~~~~~~va~f~F~eLC~~~-lg~~DY 292 (404)
-. +..+.... +. ....... ....+++|......++.- ..+--..=+...|...| ......
T Consensus 205 i~~~L~~i~~~~----~~--~~~~~~~-~l~~~a~GS~~~Al~L~~----------~~gl~i~~~~~~ll~~p~~d~~~~ 267 (352)
T PRK09112 205 LKKALSHLGSKQ----GI--SAGEETE-ALLQRSEGSVRKALLLLN----------YGGLEIIDTVDQLLAGSGFDLPKA 267 (352)
T ss_pred HHHHHHHHHHCC----CC--CCHHHHH-HHHHHHCCCHHHHHHHHC----------CCHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 999999875126----89--9879999-999870899889998744----------877999999999980899998999
Q ss_pred HHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99985378899818987872463899989999999822
Q gi|254781047|r 293 VEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYE 330 (404)
Q Consensus 293 i~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd 330 (404)
.++++.+. .++..-||-.|+|.+-+
T Consensus 268 ~~la~~~~-------------~~~~~~~~~~~~~~l~~ 292 (352)
T PRK09112 268 HALAGALS-------------GRESEVQFDLFRDHLLD 292 (352)
T ss_pred HHHHHHHH-------------CCCCHHHHHHHHHHHHH
T ss_conf 99999984-------------77747899999999999
No 267
>PRK09862 putative ATP-dependent protease; Provisional
Probab=87.77 E-value=0.49 Score=26.63 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 8864998888877289999999985781
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
.--.+.+.|++|+|||||-.-+-.-+|.
T Consensus 209 GgHnlLl~GpPG~GKTMlA~rlp~ILPp 236 (506)
T PRK09862 209 GGHNLLLIGPPGTGKTMLASRINGLLPD 236 (506)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 6886598769994598999775123899
No 268
>PRK04328 hypothetical protein; Provisional
Probab=87.76 E-value=1.6 Score=23.36 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHH-HHCC
Q ss_conf 49988888772899999999-8578
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFF-ALVP 91 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy-~~l~ 91 (404)
-+-|.|++|+|||.|---|- +.+.
T Consensus 26 ~~Lv~G~pGtGKT~la~qFl~~g~~ 50 (250)
T PRK04328 26 VVLLSGGPGTGKSIFSQQFLWNGLQ 50 (250)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9999828999989999999999987
No 269
>PRK10908 cell division protein FtsE; Provisional
Probab=87.67 E-value=2.3 Score=22.40 Aligned_cols=52 Identities=23% Similarity=0.163 Sum_probs=34.4
Q ss_pred HHHHHHHHCCCCEEEEEEEEEC-CCHHHHHHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf 8999999613879998423204-713588899999999854968998178686
Q gi|254781047|r 130 PLVASSIALESRVLCFDEFMIT-NIADAIILSRLFAALFSHGCIIVMTSNFIP 181 (404)
Q Consensus 130 ~~va~~l~~~~~lLCfDEF~V~-DiaDAmil~rl~~~lf~~gv~lV~TSN~~P 181 (404)
-.+|..++.+-++|.+||=--. |+..+.-+-++++.+-+.|+++|++|....
T Consensus 146 vaiAraL~~~P~iLllDEPt~~LD~~~~~~v~~~l~~l~~~g~tvl~vtHd~~ 198 (222)
T PRK10908 146 VGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG 198 (222)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 99999997699999990987667999999999999999861999999947999
No 270
>TIGR00609 recB exodeoxyribonuclease V, beta subunit; InterPro: IPR004586 Exodeoxyribonuclease V, or RecBCD holoenzyme, (3.1.11.5 from EC) is a multifunctional nuclease with potent ATP-dependent exodeoxyribonuclease activity. Ejection of RecD, as occurs at chi recombinational hotspots, cripples exonuclease activity in favor of recombinagenic helicase activity. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. The complex catalyses exonucleolytic cleavage in either the 5' to 3' or 3' to 5' direction to yield 5-phosphooligonucleotides in the presence of ATP. This is the beta subunit .; GO: 0005524 ATP binding, 0008854 exodeoxyribonuclease V activity, 0006281 DNA repair.
Probab=87.67 E-value=1.6 Score=23.34 Aligned_cols=79 Identities=23% Similarity=0.219 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH-------------HHHHHHHHCCCCEEEEEEEEECCCHHHHHHH
Q ss_conf 146888999999999999997131122466557807-------------8999999613879998423204713588899
Q gi|254781047|r 94 KKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPI-------------PLVASSIALESRVLCFDEFMITNIADAIILS 160 (404)
Q Consensus 94 ~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl-------------~~va~~l~~~~~lLCfDEF~V~DiaDAmil~ 160 (404)
-+.++ ++.+..+|++.|...++.... .+..|.| +.+++.|.+++++..|||||=||+-==-|+.
T Consensus 369 ~~~~~-~~~~l~~v~~~L~~~k~~~~~--~gfddll~~L~~aL~~n~~~~~l~~~ir~~y~~aLIDEFQDTD~~Qy~IF~ 445 (1324)
T TIGR00609 369 LKDRV-RLRLLKEVQEELKKEKKRRRE--IGFDDLLSRLEKALKSNEEGEKLAQAIREQYPIALIDEFQDTDPQQYRIFS 445 (1324)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHH
T ss_conf 89999-999999999999998523104--783368999999974086786899999832967887243368878999999
Q ss_pred HHHHHHH--HCCCEEEE
Q ss_conf 9999998--54968998
Q gi|254781047|r 161 RLFAALF--SHGCIIVM 175 (404)
Q Consensus 161 rl~~~lf--~~gv~lV~ 175 (404)
++|.+=- ..+.+||.
T Consensus 446 ~lf~~~~~~~~~LfLIG 462 (1324)
T TIGR00609 446 KLFIAQKDFETALFLIG 462 (1324)
T ss_pred HHHHCCCCCCCCCEEEC
T ss_conf 98307886443532431
No 271
>pfam01057 Parvo_NS1 Parvovirus non-structural protein NS1. This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity.
Probab=87.43 E-value=1.1 Score=24.35 Aligned_cols=120 Identities=13% Similarity=0.150 Sum_probs=59.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHH-----HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH--HHHHHHH
Q ss_conf 8864998888877289999999985781114-----68889999999999999971311224665578078--9999996
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKK-----CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIP--LVASSIA 137 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K-----~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~--~va~~l~ 137 (404)
...-|.+||++.+|||+|..+.-.++|.-.- .-+.|.+.. ..++-+ -.+. ..+-. ..++.+.
T Consensus 112 krN~i~~~Gp~~TGks~la~ai~~~~~~~g~v~~~N~~fp~~d~~----~~~~~w-----wee~--~~~~~~ve~~r~il 180 (271)
T pfam01057 112 KRNTVWFYGPASTGKTNLAQAIAHAVPLYGCVNWTNENFPFNDCP----NKLLIW-----WEEG--LMTVKVVELAKAIL 180 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCC----CCEEEE-----ECCC--CCCHHHHHHHHHHH
T ss_conf 875699988987678999999998689527851787788764465----478999-----8078--87188999999972
Q ss_pred CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf 138799984232047135888999999998549689981786867752387405668989999985050898047
Q gi|254781047|r 138 LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS 212 (404)
Q Consensus 138 ~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~ 212 (404)
.... +|+|-=+-. .---....+|+|||.-----..++....-.- +.|++++..+++..
T Consensus 181 ~G~~-i~vD~k~k~-------------~~~l~~~PviiTsn~di~~v~~g~~~s~~Ha---~~Lk~rm~~~~~~~ 238 (271)
T pfam01057 181 GGTD-VRVDQKCKG-------------SVEIEPTPVIITSNHDITLVVDGNTTSFEHA---QPLKDRMYKFNLTK 238 (271)
T ss_pred CCCC-CEEECCCCC-------------CCCCCCCCEEEEECCCEEEEEECCCCCHHHH---HHHHHHEEEEEECC
T ss_conf 9996-256347898-------------0023799789982785799986875357777---78765368988576
No 272
>PRK04863 mukB cell division protein MukB; Provisional
Probab=87.13 E-value=0.32 Score=27.82 Aligned_cols=48 Identities=31% Similarity=0.460 Sum_probs=31.8
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 332256643102466666688649988888772899999999857811146888999
Q gi|254781047|r 46 EQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYE 102 (404)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~ 102 (404)
++|+|.+-|..... =.=|-||=|-|||-+|-.|+-++ ++--.++||-+
T Consensus 15 wNGffARTfdLd~l--------VttLsGgNGAGKSTtMaAf~taL-IPD~tlLhfrn 62 (1486)
T PRK04863 15 WNGFFARTFDLDEL--------VTTLSGGNGAGKSTTMAAFVTAL-IPDLTLLHFRN 62 (1486)
T ss_pred ECCEEEEEEECCCC--------EEEEECCCCCCHHHHHHHHHHHH-CCCCCEEECCC
T ss_conf 43531013102442--------03300588865798999999996-76430231146
No 273
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter; InterPro: IPR005898 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. This model describes a family of cyclic peptide transporters in bacteria. Syringomycin is an amphipathic, cyclic lipodepsipeptide when inserted into host causes formation of channels, permeable to a variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.; GO: 0005524 ATP binding, 0015197 peptide transporter activity, 0015833 peptide transport, 0016021 integral to membrane.
Probab=87.05 E-value=0.58 Score=26.16 Aligned_cols=49 Identities=22% Similarity=0.484 Sum_probs=33.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH------------CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 864998888877289999999985------------7811146888999999999999997
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFAL------------VPIEKKCRLHFYEFMKDVHSRIIMY 114 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~------------l~~~~K~R~HFh~FM~~ih~~l~~~ 114 (404)
-.=+||-|+=|||||-|..+|.-- .|+....|=-|-+...-|.+.-|-.
T Consensus 368 G~~VyIVG~NGCGK~TL~K~l~GLY~PQ~G~~LL~G~~V~~~~R~DYR~LFS~~F~Dy~LF 428 (555)
T TIGR01194 368 GDLVYIVGENGCGKSTLIKLLLGLYIPQEGELLLDGEAVSDDSRDDYRDLFSAVFADYYLF 428 (555)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 5289996488973899999997258787675443575456332023899999998889988
No 274
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=87.05 E-value=2.5 Score=22.17 Aligned_cols=112 Identities=17% Similarity=0.158 Sum_probs=71.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC---C-----------H-H--HHH-------HHHHHHHHHHHHHHH---HHCCCCC
Q ss_conf 4998888877289999999985781---1-----------1-4--688-------899999999999999---7131122
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI---E-----------K-K--CRL-------HFYEFMKDVHSRIIM---YRKKIEF 120 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~---~-----------~-K--~R~-------HFh~FM~~ih~~l~~---~~~~~~~ 120 (404)
=+=|-|+-|.|||-||.+..-.+.. + . + +++ ++... .-+.+.+.. +++ .
T Consensus 37 i~~ilGpnGaGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ig~v~Q~~~l~~~-ltv~e~l~~~a~l~~-L-- 112 (194)
T cd03213 37 LTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPT-LTVRETLMFAAKLRG-L-- 112 (194)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCEECCHHHHHHEEEEECCCCCCCCC-CCHHHHHHHHHHHCC-C--
T ss_conf 999998999519999999857777899628999999999757843128998466523776-849999999987269-8--
Q ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH
Q ss_conf 4665578078999999613879998423-2047135888999999998549689981786867752
Q gi|254781047|r 121 GEILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLY 185 (404)
Q Consensus 121 ~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY 185 (404)
++..----.+|..++.+-++|++||= -=-|+..+.-+-+++..+-+.|.++|+++-...++++
T Consensus 113 --SgGqrqRv~iA~aL~~~P~illlDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~ 176 (194)
T cd03213 113 --SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIF 176 (194)
T ss_pred --CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
T ss_conf --8899999999999963998899948987889899999999999999689899999588859999
No 275
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=86.98 E-value=0.6 Score=26.06 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=24.0
Q ss_pred CCC-CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 778-98999999999999999861354333225664310246666668864998888877289999
Q gi|254781047|r 19 LKY-NPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLM 83 (404)
Q Consensus 19 i~~-D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LM 83 (404)
|+| ++.|..++..|.. ..=+.+.|+.|+|||+|-
T Consensus 2 I~P~~~~Q~~~~~~l~~-------------------------------~~iv~~~GpAGtGKT~la 36 (205)
T pfam02562 2 IKPKTLGQKRYVEAIRK-------------------------------NDIVFGIGPAGTGKTYLA 36 (205)
T ss_pred CCCCCHHHHHHHHHHHC-------------------------------CCEEEEECCCCCCHHHHH
T ss_conf 87898889999999717-------------------------------980799899986099999
No 276
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=86.95 E-value=1.7 Score=23.17 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=23.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 8649988888772899999999857811
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIE 93 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~ 93 (404)
.+.+-+-|+.|.|||-||+.+-..+|..
T Consensus 160 r~NilI~G~TgSGKTTll~aL~~~ip~~ 187 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAI 187 (332)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 8719998888988999999998358953
No 277
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=86.86 E-value=1.7 Score=23.25 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=18.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 649988888772899999999857
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALV 90 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l 90 (404)
+=.-|-|+-|+|||.|+++.-+..
T Consensus 158 qr~~I~g~~g~GKT~l~~~i~k~~ 181 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYS 181 (369)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 646776687768999999998537
No 278
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=86.52 E-value=2.6 Score=21.99 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=15.9
Q ss_pred EEEEECCCCCCHHHH-HHHHHHH
Q ss_conf 499888887728999-9999985
Q gi|254781047|r 68 GIYLHGDVGQGKSML-MNLFFAL 89 (404)
Q Consensus 68 GlYL~G~VG~GKT~L-MdlFy~~ 89 (404)
=+-|+|++|+|||.| |.+..+.
T Consensus 25 itei~G~pG~GKTtl~lq~a~~~ 47 (224)
T PRK09361 25 ITQIYGPPGSGKTNICIQLAVEA 47 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999985999999999999
No 279
>KOG1970 consensus
Probab=86.43 E-value=2.7 Score=21.96 Aligned_cols=107 Identities=14% Similarity=0.171 Sum_probs=63.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCC---------HHHHHH-----------HHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 688649988888772899999999857811---------146888-----------999999999999997131122466
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIE---------KKCRLH-----------FYEFMKDVHSRIIMYRKKIEFGEI 123 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~---------~K~R~H-----------Fh~FM~~ih~~l~~~~~~~~~~~~ 123 (404)
...+=+||-|+.|||||--....-.-+-.+ -+---| |-.+|...-..+-...+
T Consensus 108 l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~k------- 180 (634)
T KOG1970 108 LGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATK------- 180 (634)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHH-------
T ss_conf 6760799857988871319999998648021230477665665554554400133036678999989999876-------
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCC---CEEEEE-CCC
Q ss_conf 5578078999999613879998423-2047135888999999998549---689981-786
Q gi|254781047|r 124 LESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHG---CIIVMT-SNF 179 (404)
Q Consensus 124 ~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~g---v~lV~T-SN~ 179 (404)
-+.+....+++..+-++|.+||+ .+.-+-|+--+..++..+...| +++|.| |+.
T Consensus 181 --yg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~ 239 (634)
T KOG1970 181 --YGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLS 239 (634)
T ss_pred --HCHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf --23165313333467507985026144400369999999999984577767999863535
No 280
>smart00350 MCM minichromosome maintenance proteins.
Probab=86.41 E-value=0.99 Score=24.70 Aligned_cols=105 Identities=24% Similarity=0.279 Sum_probs=55.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCCCCCH------HHHHHHHHH
Q ss_conf 49988888772899999999857811146888999999999999997131122----46655780------789999996
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEF----GEILESDP------IPLVASSIA 137 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~----~~~~~~dp------l~~va~~l~ 137 (404)
-+-|-|++|+|||-|+.....-.|..- ...|+..+ .....+|| |+.=|--++
T Consensus 238 hiLLvGDPGtgKSqlLk~~~~iaprsv------------------ytsG~gsS~aGLTaav~rd~~~ge~~leaGALVlA 299 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAV------------------YTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLA 299 (509)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEE------------------EEECCCCCCCCCEEEEEECCCCCCEEECCCCEECC
T ss_conf 499846998236299999998588606------------------87344455577068999817888378725641205
Q ss_pred CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 1387999842320471358889999999985496899817868677523874056689899999850508980473
Q gi|254781047|r 138 LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSG 213 (404)
Q Consensus 138 ~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~ 213 (404)
++ -+.|+|||.=-+..|-- .|.+++ +++.+=|+ |.|+.- .|+.+|-|+.-.++
T Consensus 300 D~-GiccIDEfdKm~~~dr~---alhEaM-EQQtisia----------KaGi~~--------tL~aR~sVlAAaNP 352 (509)
T smart00350 300 DN-GVCCIDEFDKMDDSDRT---AIHEAM-EQQTISIA----------KAGITT--------TLNARCSVLAAANP 352 (509)
T ss_pred CC-CEEEEEEHHHCCHHHHH---HHHHHH-HHCEEEEE----------CCCEEE--------EEECCCEEEEEECC
T ss_conf 67-54785213207877899---999999-74877874----------375179--------98557359986556
No 281
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=86.34 E-value=2.7 Score=21.93 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=50.2
Q ss_pred HHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHC-CCEEEEECCC-----------------------CHHH
Q ss_conf 78999999613879998423-204713588899999999854-9689981786-----------------------8677
Q gi|254781047|r 129 IPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSH-GCIIVMTSNF-----------------------IPEN 183 (404)
Q Consensus 129 l~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~-gv~lV~TSN~-----------------------~P~d 183 (404)
--.+|..|+.+-+||.+||= -=-|..-..-+-.++..|.+. |+++|..+-- .|++
T Consensus 155 RVaiARAL~~~P~vLLLDEPts~LD~~~r~~~~~~l~~l~~~~g~T~i~VTHD~~eA~~laDrI~VM~~G~I~q~GtP~e 234 (378)
T PRK09452 155 RVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE 234 (378)
T ss_pred HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCEEEEEECCEEEEEECHHH
T ss_conf 99999986239989995786444799999999999999999849989999889999998699899998998999948899
Q ss_pred HHCCCCCHH--HHHHHHHHHH
Q ss_conf 523874056--6898999998
Q gi|254781047|r 184 LYKDEINRN--VLVSFIELLE 202 (404)
Q Consensus 184 LY~~GLqR~--~FlPfI~~lk 202 (404)
+|.++-++- .|+-...+|.
T Consensus 235 iy~~P~~~fvA~fiG~~N~l~ 255 (378)
T PRK09452 235 IYEEPKNLFVARFIGEINVFD 255 (378)
T ss_pred HHHCCCCHHHHHHCCCCEEEE
T ss_conf 986899858986378561589
No 282
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=86.30 E-value=2.4 Score=22.30 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHCCCCCEEEE
Q ss_conf 98999999982289828998
Q gi|254781047|r 319 KRFIMLIDVFYEHKIGLIIS 338 (404)
Q Consensus 319 rRFI~LID~lYd~kv~Li~s 338 (404)
|.=|++-=+++-+.--|++.
T Consensus 455 rQRiaIARAll~~p~ILILD 474 (547)
T PRK10522 455 KKRLALLLALAEERDILLLD 474 (547)
T ss_pred HHHHHHHHHHHCCCCEEEEE
T ss_conf 99999999997499999996
No 283
>PTZ00243 ABC transporter; Provisional
Probab=86.20 E-value=0.95 Score=24.80 Aligned_cols=112 Identities=12% Similarity=0.131 Sum_probs=62.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCH-----------------------HHHHHHHH-HHHHHHH----------HHHH
Q ss_conf 499888887728999999998578111-----------------------46888999-9999999----------9999
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEK-----------------------KCRLHFYE-FMKDVHS----------RIIM 113 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~-----------------------K~R~HFh~-FM~~ih~----------~l~~ 113 (404)
=+=+-|+||+|||-|+.+...-++... |-.|=|.+ |=.+-.+ .|..
T Consensus 688 L~~IvG~vGSGKSSLL~aiLGE~~~~~G~v~~~g~iAYv~Q~pWi~n~TiReNILFg~~~d~~rY~~Vi~aCaL~~Dl~~ 767 (1560)
T PTZ00243 688 LTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQ 767 (1560)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCHHCCCCHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 89998999987999999996888435638997470897578444058739998108861049999999999678888985
Q ss_pred HH-------CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCC-HHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 71-------311224665578078999999613879998423-20471-35888999999998549689981786
Q gi|254781047|r 114 YR-------KKIEFGEILESDPIPLVASSIALESRVLCFDEF-MITNI-ADAIILSRLFAALFSHGCIIVMTSNF 179 (404)
Q Consensus 114 ~~-------~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~Di-aDAmil~rl~~~lf~~gv~lV~TSN~ 179 (404)
+- |..+..-++.---=-.+|..+-++.+++.+||- ---|. .-.-|+.+.+..+.+...++++|.+.
T Consensus 768 LP~GD~TeIGErGinLSGGQKQRIALARAvYsdadIyLLDDpLSALDahV~~~If~~~I~g~LkgKT~ILVTH~l 842 (1560)
T PTZ00243 768 LGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQV 842 (1560)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 689776630567635771378999999987426775752285433456779999999988886799699996857
No 284
>KOG3928 consensus
Probab=86.05 E-value=0.92 Score=24.90 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=22.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 688649988888772899999999857811
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIE 93 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~ 93 (404)
.|.+-+-|||.+|+|||..|....+.+-..
T Consensus 177 ~P~~r~vL~Ge~GtGKSiaL~qa~h~a~~~ 206 (461)
T KOG3928 177 HPVKRFVLDGEPGTGKSIALAQAVHYAADQ 206 (461)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 763589985799876205999999987317
No 285
>pfam01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase. Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.
Probab=85.89 E-value=1.6 Score=23.44 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=38.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH-HHCCCCEEEEEE
Q ss_conf 9988888772899999999857811146888999999999999997131122466557807899999-961387999842
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASS-IALESRVLCFDE 147 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~-l~~~~~lLCfDE 147 (404)
+.++|-.|+|||.+.--+.+.-.. ++--.+ .....+..+...... . -+...... .....+++.+||
T Consensus 1 ~vV~gvpGsGKSt~I~~l~~~~~~-----~~~p~~-----~~~~~~~~~~~~~~~--~-~i~~~~~~~~~~~~~~~iiDE 67 (226)
T pfam01443 1 IVVHGVPGCGKSTLIRKLLRTDLT-----VIRPTA-----ELRTEGKPDLPNLNV--R-TVDTFLMALLKPTGKILILDE 67 (226)
T ss_pred CEEEECCCCCHHHHHHHHHHHCCC-----CCCCCH-----HHHHCCCCCCCCCCC--C-EEEEHHHCCCCCCCCEEEECC
T ss_conf 959407999889999999864786-----423227-----776556777877775--3-774411246788778899896
Q ss_pred EEECCCHHHHHHH
Q ss_conf 3204713588899
Q gi|254781047|r 148 FMITNIADAIILS 160 (404)
Q Consensus 148 F~V~DiaDAmil~ 160 (404)
++.-+.+--.++.
T Consensus 68 ~~~~~~g~l~~~~ 80 (226)
T pfam01443 68 YTLLPPGYILLLA 80 (226)
T ss_pred CCCCCHHHHHHHH
T ss_conf 4566816899987
No 286
>pfam07693 KAP_NTPase KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.
Probab=85.89 E-value=2.8 Score=21.79 Aligned_cols=29 Identities=28% Similarity=0.229 Sum_probs=24.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 68864998888877289999999985781
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
.+|--+=|+|+=|+|||.++++..+.+..
T Consensus 18 ~~~~vIgl~G~WGsGKTs~l~~~~~~L~~ 46 (301)
T pfam07693 18 APGFVIGLYGAWGSGKTSFLNLLEDELKE 46 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 99979999898999999999999999861
No 287
>pfam01580 FtsK_SpoIIIE FtsK/SpoIIIE family. FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Probab=85.79 E-value=1.2 Score=24.07 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 49988888772899999999857
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALV 90 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l 90 (404)
-+.+-|..|.|||.++.....++
T Consensus 40 H~Lv~G~tGsGKS~~l~~li~sl 62 (202)
T pfam01580 40 HLLIAGATGSGKSTFLNTLILSL 62 (202)
T ss_pred CEEEECCCCCCCCHHHHHHHHHH
T ss_conf 68996589998009999999999
No 288
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=85.69 E-value=0.47 Score=26.76 Aligned_cols=100 Identities=23% Similarity=0.376 Sum_probs=55.0
Q ss_pred EEEECCCCCCHHHHHHHHH----HHCCCC-------------HHHHHHHHHHHHH-------------------------
Q ss_conf 9988888772899999999----857811-------------1468889999999-------------------------
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFF----ALVPIE-------------KKCRLHFYEFMKD------------------------- 106 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy----~~l~~~-------------~K~R~HFh~FM~~------------------------- 106 (404)
.-|-||||+|||....=.- ...+.+ .|-=.|-++=|..
T Consensus 245 ~li~GGPGTGKTTTv~~LL~al~~~~~~~G~~~~~I~l~APTGKAa~RL~esl~~~~~~L~~~~~aid~~~~~~~~~~~~ 324 (753)
T TIGR01447 245 SLITGGPGTGKTTTVARLLLALIKQSPKQGKPRLRIALAAPTGKAAARLAESLRKAVKKLAAENMAIDEDLIAALPSEAT 324 (753)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHH
T ss_conf 89987988977899999999999989864997404788668447999999999988632234236658798548720456
Q ss_pred -HHHHHHHHH-CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHC-C--------CEEEE
Q ss_conf -999999971-311224665578078999999613879998423204713588899999999854-9--------68998
Q gi|254781047|r 107 -VHSRIIMYR-KKIEFGEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSH-G--------CIIVM 175 (404)
Q Consensus 107 -ih~~l~~~~-~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~-g--------v~lV~ 175 (404)
||+.|-... .+.... -+..|||+ .+||-+||=-- -|.-+|.+|++++-.. . .+|+-
T Consensus 325 TiHrLLG~~~I~~~~fr-~h~~N~L~---------~DVLvvDEaSM---Vdl~lm~kL~~A~~~~~k~~KLy~~~LIllG 391 (753)
T TIGR01447 325 TIHRLLGIKPIDTKRFR-HHERNPLP---------LDVLVVDEASM---VDLPLMAKLLKALPPNTKDKKLYADRLILLG 391 (753)
T ss_pred HHHHHHCCCCCCCCCCC-CCCCCCCC---------CCEEEECCCHH---CCHHHHHHHHHHCCCCCCCCCHHHCCCCEEC
T ss_conf 88886166147876776-77778898---------55278706002---2679999999722630013201010200122
Q ss_pred ECCCCH
Q ss_conf 178686
Q gi|254781047|r 176 TSNFIP 181 (404)
Q Consensus 176 TSN~~P 181 (404)
=.|--|
T Consensus 392 D~nQL~ 397 (753)
T TIGR01447 392 DKNQLP 397 (753)
T ss_pred CCCCCC
T ss_conf 678888
No 289
>PRK10646 putative ATPase; Provisional
Probab=85.54 E-value=1 Score=24.60 Aligned_cols=88 Identities=17% Similarity=0.218 Sum_probs=52.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH-CCCCEEEE
Q ss_conf 64998888877289999999985781114688899999999999999713112246655780789999996-13879998
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIA-LESRVLCF 145 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~-~~~~lLCf 145 (404)
.=|+|+|+.|.|||.+...+.+++..... + .-|-=.+++... ....+.-+
T Consensus 29 ~vi~L~G~LGaGKTtf~r~i~~~lg~~~~--V---------------------------~SPTf~lv~~Y~~~~~~~~H~ 79 (153)
T PRK10646 29 TVIYLYGDLGAGKTTFSRGFLQALGHQGN--V---------------------------KSPTYTLVEPYTLDNLMVYHF 79 (153)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCC--C---------------------------CCCCEEEEEEECCCCCEEEEE
T ss_conf 79999888878999999999998499786--2---------------------------699764799732899338999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 423204713588899999999854968998178686775
Q gi|254781047|r 146 DEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404)
Q Consensus 146 DEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404)
|=+-+.+..++--++ +-+.+-+.++.+|==..+.++-|
T Consensus 80 DlYRl~~~~e~~~lg-~~e~~~~~~i~lIEWpe~~~~~l 117 (153)
T PRK10646 80 DLYRLADPEELEFMG-IRDYFANDAICLVEWPQQGTGVL 117 (153)
T ss_pred EEECCCCHHHHHHCC-CHHHHCCCCEEEEECCCCCCCCC
T ss_conf 853469988998778-78885799699998976510108
No 290
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.27 E-value=3 Score=21.60 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 6499888887728999999998578
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
.=+=|-|+=|+|||-|+.+.---.+
T Consensus 27 e~~~iiG~SGsGKSTll~~i~gL~~ 51 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 8999999999729999999975999
No 291
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.20 E-value=3.1 Score=21.58 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 6499888887728999999998578
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
.=+-|-|+=|+|||-|+.+..--.+
T Consensus 31 e~~~iiGpsGsGKSTLl~~i~Gl~~ 55 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 8999999999579999999975999
No 292
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=84.91 E-value=0.73 Score=25.55 Aligned_cols=131 Identities=10% Similarity=0.095 Sum_probs=71.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHH-------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH-
Q ss_conf 86499888887728999999998578111468-------8899999999999999713112246655780789999996-
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCR-------LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIA- 137 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R-------~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~- 137 (404)
+-++.+.|+.|.||+-+-..|-..+-+..+.. -.-+-+...-|-.++...... +....-|-+..+.+.+.
T Consensus 23 ~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~~~~--~k~I~vd~IR~l~~~~~~ 100 (324)
T PRK06871 23 HHALLFKADSGLGTEQLIRALAQWLMCQAPGDEQPCGQCHSCHLFQAGNHPDFHILEPID--GKDIGVDQVREINEKVSQ 100 (324)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCC--CCCCCHHHHHHHHHHHHH
T ss_conf 437876899997899999999999828999999988889899999738999879984678--887889999999999864
Q ss_pred ----CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf ----1387999842320471358889999999985496899817868677523874056689899999850508980473
Q gi|254781047|r 138 ----LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSG 213 (404)
Q Consensus 138 ----~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~ 213 (404)
+..+|+.+|+.+--..+-|=-|=+.+|.==.+-+++.+|++ + +.| ...|..+|.++++...
T Consensus 101 ~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEPp~~~~fiL~t~~-~-~~l-------------l~TI~SRCq~~~~~~p 165 (324)
T PRK06871 101 FAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADL-S-ASL-------------LATIYSRCQTWLIHVP 165 (324)
T ss_pred CCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC-C-CCC-------------CCHHHHCCCCEECCCC
T ss_conf 622059669997588885799999999983389878389998787-0-103-------------2408626612008994
No 293
>KOG3859 consensus
Probab=84.77 E-value=0.47 Score=26.77 Aligned_cols=98 Identities=14% Similarity=0.114 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHCCEEEECCCCCHHHH--------------CCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCC-CCCCE
Q ss_conf 68989999985050898047311221--------------1236783022035302268999999986044446-77632
Q gi|254781047|r 193 VLVSFIELLEKKLEIISLDSGQDYRR--------------KEQSILPIYMTPLNSYNRVLMDKLWAHITKGKKS-LSLNI 257 (404)
Q Consensus 193 ~FlPfI~~lk~~~~V~~l~~~~DYR~--------------~~~~~~~~y~~p~~~~~~~~l~~~f~~l~~~~~~-~~~~i 257 (404)
+=|-+++-|..+..|+.+-..-|--. ...++..+|-.|.|.++-++.+........=... ....+
T Consensus 165 lDLvtmk~LdskVNIIPvIAKaDtisK~eL~~FK~kimsEL~sngv~IYqfPtDdetva~~N~~mn~~lPFAVvGSte~v 244 (406)
T KOG3859 165 LDLVTMKKLDSKVNIIPVIAKADTISKEELKRFKIKIMSELVSNGVQIYQFPTDDETVAKANSEMNHSLPFAVVGSTEEV 244 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 79999998753401578888764430999999999999999865854663465277898888876337862676523765
Q ss_pred EEECCEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHH
Q ss_conf 76368089961220211110199985210246899999853
Q gi|254781047|r 258 STEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANR 298 (404)
Q Consensus 258 ~v~~gR~i~v~~~~~~va~f~F~eLC~~~lg~~DYi~Ia~~ 298 (404)
.+ .+.-+..+..--|++-+..+..| ||..+.+-
T Consensus 245 Kv-gnkmvraRqyPwG~v~vENE~HC-------DFVKLREm 277 (406)
T KOG3859 245 KV-GNKMVKARQYPWGTVQVENELHC-------DFVKLREM 277 (406)
T ss_pred HH-HHHHHHHCCCCCCCEEECCHHHH-------HHHHHHHH
T ss_conf 43-11455530599984210113330-------89999998
No 294
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=84.70 E-value=3.2 Score=21.44 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=35.6
Q ss_pred HHHHHHHHCCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHHC-CCEEEEECCC
Q ss_conf 89999996138799984232-04713588899999999854-9689981786
Q gi|254781047|r 130 PLVASSIALESRVLCFDEFM-ITNIADAIILSRLFAALFSH-GCIIVMTSNF 179 (404)
Q Consensus 130 ~~va~~l~~~~~lLCfDEF~-V~DiaDAmil~rl~~~lf~~-gv~lV~TSN~ 179 (404)
-.+|..|+.+-+||++||=. --|..-..-+...+..|.+. |+++|.++--
T Consensus 143 valARAL~~~P~vlllDEP~s~LD~~~r~~~~~~l~~l~~~~g~T~i~vTHd 194 (358)
T PRK11650 143 VAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLGTTSLYVTHD 194 (358)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECC
T ss_conf 9983575049986887388776799899999999999999759779999899
No 295
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=84.69 E-value=3.2 Score=21.44 Aligned_cols=56 Identities=16% Similarity=0.126 Sum_probs=42.6
Q ss_pred HHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHC-CCEEEEECCCCHHHH
Q ss_conf 78999999613879998423-204713588899999999854-968998178686775
Q gi|254781047|r 129 IPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSH-GCIIVMTSNFIPENL 184 (404)
Q Consensus 129 l~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~-gv~lV~TSN~~P~dL 184 (404)
--.+|..|+.+-+||.+||= ---|+.-..-+-.+++.+-+. |+.+|..|-...+-+
T Consensus 136 RvaiARAL~~~P~lLllDEP~s~LD~~~~~~i~~~l~~l~~~~~~til~VTHd~~e~~ 193 (352)
T PRK11144 136 RVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAQEINIPILYVSHSLDEIL 193 (352)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHH
T ss_conf 4999998724999999878400279779999999999999973988999939999999
No 296
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=84.60 E-value=2.1 Score=22.58 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 499888887728999999998578
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
=+=|-|+=|+|||-|+.+.-..+.
T Consensus 39 ~v~iiG~nGsGKSTL~r~l~gl~~ 62 (281)
T PRK13633 39 FLVILGHNGSGKSTIAKHMNALLL 62 (281)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999849999999975887
No 297
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=84.60 E-value=2 Score=22.70 Aligned_cols=89 Identities=17% Similarity=0.200 Sum_probs=61.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH-CCCCEEE
Q ss_conf 864998888877289999999985781114688899999999999999713112246655780789999996-1387999
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIA-LESRVLC 144 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~-~~~~lLC 144 (404)
..=|||.|+.|.|||-+...+-..+-+.. .+ +-|-=.+++... ..-+|.-
T Consensus 25 g~Vv~L~GdLGAGKTtf~rgi~~~Lg~~~--~V---------------------------~SPTFtlv~~Y~~~~~~lyH 75 (149)
T COG0802 25 GDVVLLSGDLGAGKTTLVRGIAKGLGVDG--NV---------------------------KSPTFTLVEEYEEGRLPLYH 75 (149)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCC--CC---------------------------CCCCEEEEHHHCCCCCCEEE
T ss_conf 98899977876885999999999749997--52---------------------------49876101211379987799
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 8423204713588899999999854968998178686775
Q gi|254781047|r 145 FDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404)
Q Consensus 145 fDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404)
||=..+.|..+.-.++ +.+.+...||.+|==+.+.++.|
T Consensus 76 ~DlYRl~d~ee~~~lg-~~e~~~~~gv~lIEW~e~~~~~l 114 (149)
T COG0802 76 FDLYRLSDPEELDELG-LDEYFDGDGICLIEWPERLAELL 114 (149)
T ss_pred EEEECCCCHHHHHHCC-HHHHHCCCCEEEEECCCHHCCCC
T ss_conf 8611258867756669-88974778489998741121589
No 298
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=84.54 E-value=2.5 Score=22.12 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 8864998888877289999999985781
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
+.|-|-+-||-|.|||-|-|+.-+.+..
T Consensus 138 ar~NIlv~GGTGSGKTTLaNAlla~I~~ 165 (315)
T TIGR02782 138 ARKNILVVGGTGSGKTTLANALLAEIAK 165 (315)
T ss_pred HCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 1298899814588579999999998852
No 299
>KOG0054 consensus
Probab=84.37 E-value=2.9 Score=21.73 Aligned_cols=114 Identities=14% Similarity=0.176 Sum_probs=61.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCH-----------------------HHHHHHHHHHHH-HHHH----------HH
Q ss_conf 6499888887728999999998578111-----------------------468889999999-9999----------99
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEK-----------------------KCRLHFYEFMKD-VHSR----------II 112 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~-----------------------K~R~HFh~FM~~-ih~~----------l~ 112 (404)
+=+=+-|+||+|||=|+.+.-..++.-+ +-.+=|-.-|-+ -.++ |.
T Consensus 548 ~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs~aYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle 627 (1381)
T KOG0054 548 QLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLE 627 (1381)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCHHHCCCHHHHHCCCCCCCHHHHHHHHHHCCCHHHHH
T ss_conf 88999899988889999999658755675599847489866655641785667500687035999999999706776797
Q ss_pred HH-H------CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEE-ECCC-HHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 97-1------3112246655780789999996138799984232-0471-358889999999985496899817868
Q gi|254781047|r 113 MY-R------KKIEFGEILESDPIPLVASSIALESRVLCFDEFM-ITNI-ADAIILSRLFAALFSHGCIIVMTSNFI 180 (404)
Q Consensus 113 ~~-~------~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF~-V~Di-aDAmil~rl~~~lf~~gv~lV~TSN~~ 180 (404)
.+ . |..+..-+++--.=-..|..+=++.++-.+|--. --|. .--.|+.+.+..+.+...++..|-+-.
T Consensus 628 ~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~ 704 (1381)
T KOG0054 628 ILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ 704 (1381)
T ss_pred HCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 46898753577886277676999999999986579989887963224077669999999987645988999847166
No 300
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=84.33 E-value=1.5 Score=23.47 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=39.9
Q ss_pred CEEEEEEEEECCCH-HHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 79998423204713-588899999999854968998178686775
Q gi|254781047|r 141 RVLCFDEFMITNIA-DAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404)
Q Consensus 141 ~lLCfDEF~V~Dia-DAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404)
-++-|||+|..+.- ..-++.++++.+-..|+.+|.+|=+.|..+
T Consensus 340 S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~ 384 (733)
T COG1203 340 SLVILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPPFL 384 (733)
T ss_pred CCEEEECHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
T ss_conf 677874275416543089999999999968997899927899799
No 301
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=84.21 E-value=3.4 Score=21.31 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=14.3
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9988888772899999999
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFF 87 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy 87 (404)
+-|+|++|+|||-|+=-+-
T Consensus 22 t~i~G~pG~GKStl~lq~a 40 (218)
T cd01394 22 TQVYGPPGTGKTNIAIQLA 40 (218)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998999984999999999
No 302
>COG2766 PrkA Putative Ser protein kinase [Signal transduction mechanisms]
Probab=84.07 E-value=0.44 Score=26.94 Aligned_cols=24 Identities=42% Similarity=0.452 Sum_probs=19.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 688649988888772899999999
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFF 87 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy 87 (404)
...++|||-|+||-|||-|.-..-
T Consensus 101 ~~kqiL~LlGPVggGKSsl~e~lk 124 (649)
T COG2766 101 ERKQILYLLGPVGGGKSSLAERLK 124 (649)
T ss_pred HHHHHHEEECCCCCCHHHHHHHHH
T ss_conf 666553043567876678999999
No 303
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=84.07 E-value=3.3 Score=21.41 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=28.3
Q ss_pred HHHHHHHHHCCCCEEEEEEE--EECCCHHHHHHHHHHHHHHHC-CCEEEEEC
Q ss_conf 78999999613879998423--204713588899999999854-96899817
Q gi|254781047|r 129 IPLVASSIALESRVLCFDEF--MITNIADAIILSRLFAALFSH-GCIIVMTS 177 (404)
Q Consensus 129 l~~va~~l~~~~~lLCfDEF--~V~DiaDAmil~rl~~~lf~~-gv~lV~TS 177 (404)
--.+|..|+.+-+||.+||= ++ |+.. +..|.+.|-+. |.+||.|-
T Consensus 171 Rv~LA~aL~~~PdlLlLDEPTn~L-D~~~---i~~L~~~L~~~~gtvivVSH 218 (556)
T PRK11819 171 RVALCRLLLSKPDMLLLDEPTNHL-DAES---VAWLEQFLHDYPGTVVAVTH 218 (556)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCC-CHHH---HHHHHHHHHHCCCCEEEEEE
T ss_conf 999999984699989984887778-9778---99999997633787799991
No 304
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=83.80 E-value=3.5 Score=21.20 Aligned_cols=108 Identities=19% Similarity=0.318 Sum_probs=68.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCH-------------------HHH----HHHHHHHH--------------------
Q ss_conf 99888887728999999998578111-------------------468----88999999--------------------
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIEK-------------------KCR----LHFYEFMK-------------------- 105 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~~-------------------K~R----~HFh~FM~-------------------- 105 (404)
+||-|+=|-|||-||.|.|.....++ ..| +=|-||=+
T Consensus 31 ~FLtG~SGAGKttLLKLl~~~~~P~~G~v~~~G~~~~~l~~~~~P~LRR~iGvvFQDf~LL~~rTv~eNVAl~L~V~G~~ 110 (215)
T TIGR02673 31 LFLTGPSGAGKTTLLKLLYGALTPSRGQVRVAGEDVSRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKK 110 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCEECCCCCCCCCHHHHCCCCEEEECCCCCCCCCHHHHCCHHHHCCCCC
T ss_conf 78872778617899999985269875808888740466775643122131543784221101166134112101113888
Q ss_pred --HHHHHHHHHHCCCCCCCCCCCCHHH---------HHHHHHHCCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHHCCCEE
Q ss_conf --9999999971311224665578078---------9999996138799984232-047135888999999998549689
Q gi|254781047|r 106 --DVHSRIIMYRKKIEFGEILESDPIP---------LVASSIALESRVLCFDEFM-ITNIADAIILSRLFAALFSHGCII 173 (404)
Q Consensus 106 --~ih~~l~~~~~~~~~~~~~~~dpl~---------~va~~l~~~~~lLCfDEF~-V~DiaDAmil~rl~~~lf~~gv~l 173 (404)
+|+.+-.+.=...+........|.. .||..+..+=.||-=||== =-|.+-+-=+=+||+.+-++|+++
T Consensus 111 ~~~I~~rV~~~L~~vGL~~K~~~~P~~LSGGEQQRvaIARAiv~~P~lLLADEPTGNLD~~~~~~iL~ll~~~n~~GtTV 190 (215)
T TIGR02673 111 KREIQRRVEAALRLVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPELLLADEPTGNLDPALSERILDLLKELNKRGTTV 190 (215)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEE
T ss_conf 03367899999985286325425721004725788888765304896798778899968767899999999984189879
Q ss_pred EEE
Q ss_conf 981
Q gi|254781047|r 174 VMT 176 (404)
Q Consensus 174 V~T 176 (404)
|.+
T Consensus 191 ~vA 193 (215)
T TIGR02673 191 IVA 193 (215)
T ss_pred EEE
T ss_conf 998
No 305
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=83.65 E-value=3.6 Score=21.16 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 864998888877289999999985781
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
-.=+-|-|+=|+|||-|+.+..-..+.
T Consensus 36 GE~v~ivG~sGsGKSTLl~~i~Gl~~p 62 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAGLDDG 62 (228)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 989999999985899999999669999
No 306
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=83.60 E-value=1.7 Score=23.17 Aligned_cols=27 Identities=33% Similarity=0.650 Sum_probs=24.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 864998888877289999999985781
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
+-|+-|-|+.|+|||.++-.+-+.+|.
T Consensus 33 iGgVLi~G~~GtgKStlvRala~lLP~ 59 (347)
T CHL00081 33 IGGVMIMGDRGTGKSTTIRALVDLLPE 59 (347)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 786998789987499999999985787
No 307
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=83.45 E-value=3.6 Score=21.11 Aligned_cols=24 Identities=33% Similarity=0.528 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 499888887728999999998578
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
=+-|-|+=|+|||-|+.+..--..
T Consensus 29 ~v~i~GpSGsGKSTLl~~i~gl~~ 52 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999997999539999999962989
No 308
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=83.37 E-value=3.7 Score=21.09 Aligned_cols=59 Identities=12% Similarity=0.131 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEC--CCCHHHHCC
Q ss_conf 24689999985378899818987872463899989999999822898289980--789788013
Q gi|254781047|r 287 LSANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISS--EENIEDLFP 348 (404)
Q Consensus 287 lg~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa--~~~~~~L~~ 348 (404)
....|-.++.++|..+=+ -.+=....|++.++-++++++++.+.+|.+.+ +--||+|-.
T Consensus 330 ~~~~dl~~i~~~f~~~~~---~~lI~TKlDEt~~~G~il~~~~~~~lplsy~t~GQ~VPeDi~~ 390 (412)
T PRK05703 330 TKYRDLKDIVKHFSRLPL---DGLILTKLDETSSLGSILSLLIESGLPISYLTDGQRVPDDIKV 390 (412)
T ss_pred CCHHHHHHHHHHHCCCCC---CEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHC
T ss_conf 998999999998467999---8799971128998629999999988796999469997243422
No 309
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=83.09 E-value=3.8 Score=21.02 Aligned_cols=98 Identities=16% Similarity=0.174 Sum_probs=53.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCH-----------H-HHHHHHHH-----------HHHHHHHHHHHHCCCCCCC
Q ss_conf 86499888887728999999998578111-----------4-68889999-----------9999999999713112246
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEK-----------K-CRLHFYEF-----------MKDVHSRIIMYRKKIEFGE 122 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~-----------K-~R~HFh~F-----------M~~ih~~l~~~~~~~~~~~ 122 (404)
.+=|.|.|+.|+|||-.+.++-..+...- . ...-+++| +.+..+.+....+...
T Consensus 45 ~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP~~~~~~~~~~q~~d~~g~~~~~~~S~~~~F~eFLlr~~ky~s--- 121 (490)
T pfam03215 45 QLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNPEYLHNPDNECQKPDFRGDCIVNSLSQMEQFREFLLRGARYGS--- 121 (490)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC---
T ss_conf 31899879899889999999999759689981486545677502210121234576666377776788762233565---
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCC----CEEEEE
Q ss_conf 655780789999996138799984232047135888999999998549----689981
Q gi|254781047|r 123 ILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHG----CIIVMT 176 (404)
Q Consensus 123 ~~~~dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~g----v~lV~T 176 (404)
+. ....+-+||.++||==.--.|..-+...+......+ +|+|+|
T Consensus 122 ------L~----~~~~~kriILIEE~Pn~~~~d~~~fr~~L~~~L~s~~~~PlV~IiS 169 (490)
T pfam03215 122 ------LQ----GGGLKKKLILVEELPNQFYSDAEKFREVIREVLQSIWHLPLIFCLT 169 (490)
T ss_pred ------CC----CCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf ------44----5788735999965887442366999999999997089998799997
No 310
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=82.93 E-value=3.8 Score=20.98 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=82.9
Q ss_pred HCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC--CC
Q ss_conf 6138799984232047135888999999998549689981786867752387405668989999985050898047--31
Q gi|254781047|r 137 ALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS--GQ 214 (404)
Q Consensus 137 ~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~--~~ 214 (404)
...++|.-+||-+--+..-|=-|=+++|.==.+-++ |..|+. |+ +.+| .|..+|..+.+.- ..
T Consensus 137 ~g~~kV~IId~ad~mn~~aaNALLK~LEEPP~~t~f-iLit~~-~~----------~llp---TI~SRCq~~~~~~l~~~ 201 (363)
T PRK07471 137 EGGWRVVIVDTADEMNANAANALLKVLEEPPARSLL-LLVSHA-PA----------RLLP---TIRSRCRKLRLRPLAPE 201 (363)
T ss_pred CCCCEEEEEECHHHHCHHHHHHHHHHHCCCCCCEEE-EEEECC-HH----------HCHH---HHHHHCCCCCCCCCCHH
T ss_conf 489669998687873889999999972158988389-986399-77----------7779---99973524258995999
Q ss_pred HHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCHHHHHHH-H-CCHHHH
Q ss_conf 12211236783022035302268999999986044446776327636808996122021111019998521-0-246899
Q gi|254781047|r 215 DYRRKEQSILPIYMTPLNSYNRVLMDKLWAHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDR-P-LSANDF 292 (404)
Q Consensus 215 DYR~~~~~~~~~y~~p~~~~~~~~l~~~f~~l~~~~~~~~~~i~v~~gR~i~v~~~~~~va~f~F~eLC~~-~-lg~~DY 292 (404)
|-...-.... . .+..+..+. ....++.|.......+.-. .+--++-.+..|... | +-....
T Consensus 202 ~~~~~L~~~~----~--~~~~~~~~~-~la~~a~Gs~~~Al~l~~~----------~~~~l~~~~~~ll~~~~~~d~~~~ 264 (363)
T PRK07471 202 DVIAALAEAG----G--PALDDAELA-ALAALAEGSVGRALRLAGG----------DGLALYQRTTALLDTLPRLDRRAL 264 (363)
T ss_pred HHHHHHHHHC----C--CCCCHHHHH-HHHHHCCCCHHHHHHHHCC----------CHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 9999999843----8--999989999-9999758999999987479----------859999999999974767899999
Q ss_pred HHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 99985378899818987872463899989999999822898289980
Q gi|254781047|r 293 VEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISS 339 (404)
Q Consensus 293 i~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa 339 (404)
.++++.+. ....+....|+.+++.+.-+..+.-...
T Consensus 265 ~~lad~~a-----------~~~~~~~~~~l~l~~~~l~~~~r~~~~~ 300 (363)
T PRK07471 265 HALADAAA-----------GGDRAAFALFLDLLDRWLARLARAGARN 300 (363)
T ss_pred HHHHHHHC-----------CCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999981-----------6877999999999999999999875227
No 311
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=82.86 E-value=3.8 Score=20.97 Aligned_cols=54 Identities=28% Similarity=0.280 Sum_probs=45.9
Q ss_pred HHHHHHHHHCCCCEEEEEE-EEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf 7899999961387999842-32047135888999999998549689981786867
Q gi|254781047|r 129 IPLVASSIALESRVLCFDE-FMITNIADAIILSRLFAALFSHGCIIVMTSNFIPE 182 (404)
Q Consensus 129 l~~va~~l~~~~~lLCfDE-F~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~ 182 (404)
.-.+|..++.+.++|-+|| +---|+..+.-+-+++..|-++|+.+|..|.+..+
T Consensus 149 rv~iA~aL~~~p~lliLDEPt~~Ld~~~~~~l~~~l~~l~~~g~til~isH~l~~ 203 (501)
T PRK10762 149 MVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRMKE 203 (501)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHH
T ss_conf 9999999845998775358755788788899999887877448414775142576
No 312
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=82.79 E-value=3.9 Score=20.94 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9988888772899999999857
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALV 90 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l 90 (404)
|-+=|.+|+|||-|...+-+.+
T Consensus 2 I~IEGnIG~GKTTl~~~La~~l 23 (219)
T cd02030 2 ITVDGNIASGKGKLAKELAEKL 23 (219)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8996785679999999999985
No 313
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=82.75 E-value=2.1 Score=22.66 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=26.0
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 6666886499888887728999999998578
Q gi|254781047|r 61 RKYCSMQGIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 61 ~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
++...|+-+.|=|++|.|||.+...+...+.
T Consensus 7 ~~~~~Pkai~laG~pGAGKS~~~~~~~~~~~ 37 (191)
T pfam06414 7 PPQERPVAVLLGGQPGAGKTELARALLEELG 37 (191)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9876987999957998888999999987537
No 314
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=82.65 E-value=0.67 Score=25.77 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=18.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 668864998888877289999999
Q gi|254781047|r 63 YCSMQGIYLHGDVGQGKSMLMNLF 86 (404)
Q Consensus 63 ~~~~kGlYL~G~VG~GKT~LMdlF 86 (404)
.+..||+..-|++|.||||||.--
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~s 1514 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPS 1514 (3164)
T ss_pred HHCCCEEEEECCCCCCCCHHCCHH
T ss_conf 740634999789997510112636
No 315
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=82.47 E-value=0.61 Score=26.02 Aligned_cols=134 Identities=21% Similarity=0.238 Sum_probs=68.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH----HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf 499888887728999999998578111468889999----9999999999713112246655780789999996138799
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEF----MKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL 143 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~F----M~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL 143 (404)
=|=++||+|+|||=|=..--.++.- | |-.| |.++ +++.-.|.+-=+.-++ -|-+--++-..+-.|+
T Consensus 452 IlClvGPPGVGKTSlg~SIA~ALnR--k----FvR~SlGG~~De-AEIrGHRRTYvGAMPG---riiQ~lk~~~t~NPl~ 521 (941)
T TIGR00763 452 ILCLVGPPGVGKTSLGKSIAKALNR--K----FVRFSLGGVRDE-AEIRGHRRTYVGAMPG---RIIQGLKKAKTKNPLI 521 (941)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC--E----EEEEEECCCEEH-HHCCCCCCCCCCCCHH---HHHHHHHHCCCCCCEE
T ss_conf 7872072695422278999999688--0----499952672203-1127864320346725---7899987604158806
Q ss_pred EEEEEEE--------CCCHHHHHH-------HHHHHHHHH-----CCCE--EEEECCCC---HHHHHCCCCCHHHHHHHH
Q ss_conf 9842320--------471358889-------999999985-----4968--99817868---677523874056689899
Q gi|254781047|r 144 CFDEFMI--------TNIADAIIL-------SRLFAALFS-----HGCI--IVMTSNFI---PENLYKDEINRNVLVSFI 198 (404)
Q Consensus 144 CfDEF~V--------~DiaDAmil-------~rl~~~lf~-----~gv~--lV~TSN~~---P~dLY~~GLqR~~FlPfI 198 (404)
.+||.-= -|+|.|.|= .+|..++.+ -.|. .|||+|+. |.=
T Consensus 522 LlDEIDK~~~~~~~~GDPaSALLEvLDPEQN~~F~DHYldvp~DLS~V~CyFi~TAN~~d~IP~P--------------- 586 (941)
T TIGR00763 522 LLDEIDKIGLKSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVLCYFIATANSIDTIPRP--------------- 586 (941)
T ss_pred EEEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCCCCCCCCCCHHHHHHHEEECCCCCCCCCCC---------------
T ss_conf 86202200167886556378886412864360425530023400420021000244757677722---------------
Q ss_pred HHHHHCCEEEECCCCCHHHHCCCCCCCEEEEC
Q ss_conf 99985050898047311221123678302203
Q gi|254781047|r 199 ELLEKKLEIISLDSGQDYRRKEQSILPIYMTP 230 (404)
Q Consensus 199 ~~lk~~~~V~~l~~~~DYR~~~~~~~~~y~~p 230 (404)
|.+||+|++|.|-+.==+ +.-+..|+.|
T Consensus 587 --LLDRMEvI~lsGY~~~EK--~~IA~~yLiP 614 (941)
T TIGR00763 587 --LLDRMEVIELSGYTEEEK--LEIAKKYLIP 614 (941)
T ss_pred --CCCCEEEEECCCCCHHHH--HHHHHHCCHH
T ss_conf --137402452388876789--9999854713
No 316
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=82.10 E-value=1.3 Score=23.95 Aligned_cols=26 Identities=35% Similarity=0.358 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 49988888772899999999857811
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIE 93 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~ 93 (404)
-+.++|+.|+|||-||..|.......
T Consensus 7 kivv~G~~g~GKTtl~~~l~~~~~~~ 32 (219)
T COG1100 7 KIVVLGDGGVGKTTLLNRLVGDEFPE 32 (219)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 99999999998899999996476765
No 317
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=82.07 E-value=1.6 Score=23.44 Aligned_cols=33 Identities=21% Similarity=0.483 Sum_probs=27.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCH
Q ss_conf 666886499888887728999999998578111
Q gi|254781047|r 62 KYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEK 94 (404)
Q Consensus 62 ~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~ 94 (404)
+-...|-|=|-||-|.|||-+|++.-+.+|..+
T Consensus 154 Ai~~~knIii~GGTgSGKTTf~kal~~~IP~~E 186 (328)
T TIGR02788 154 AIASRKNIIISGGTGSGKTTFLKALVKEIPKDE 186 (328)
T ss_pred HHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCC
T ss_conf 987389199990689718999999973276225
No 318
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=82.03 E-value=0.54 Score=26.38 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=14.7
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9988888772899999999
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFF 87 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy 87 (404)
+-+=|+||||||-|.+.+-
T Consensus 3 ~~f~G~~gCGKTTL~q~L~ 21 (144)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQ 21 (144)
T ss_pred EEEEECCCCCHHHHHHHCC
T ss_conf 7887158887443543116
No 319
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=81.96 E-value=4.1 Score=20.75 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=15.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 86499888887728999999998
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFA 88 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~ 88 (404)
-.-+=|-|.-|+|||-|..+.-.
T Consensus 364 GEkvAIlG~SGsGKSTllqLl~~ 386 (573)
T COG4987 364 GEKVAILGRSGSGKSTLLQLLAG 386 (573)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 87688877999878999999972
No 320
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=81.88 E-value=4.2 Score=20.73 Aligned_cols=22 Identities=27% Similarity=0.452 Sum_probs=17.1
Q ss_pred CCEE-EEECCCCCCHHHHHHHHH
Q ss_conf 8649-988888772899999999
Q gi|254781047|r 66 MQGI-YLHGDVGQGKSMLMNLFF 87 (404)
Q Consensus 66 ~kGl-YL~G~VG~GKT~LMdlFy 87 (404)
|.|+ =|-|+=|+|||-|+++.-
T Consensus 21 p~GitaIvGpsGsGKSTLl~~i~ 43 (197)
T cd03278 21 PPGLTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 89828999999998899999999
No 321
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=81.83 E-value=4.2 Score=20.72 Aligned_cols=46 Identities=24% Similarity=0.242 Sum_probs=31.5
Q ss_pred HHHHHHHCCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 9999996138799984232-047135888999999998549689981
Q gi|254781047|r 131 LVASSIALESRVLCFDEFM-ITNIADAIILSRLFAALFSHGCIIVMT 176 (404)
Q Consensus 131 ~va~~l~~~~~lLCfDEF~-V~DiaDAmil~rl~~~lf~~gv~lV~T 176 (404)
.||..+..+-.||.=||=- =-|+.-|-=+=+||+.+-..|+++++.
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~A 193 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMA 193 (223)
T ss_pred HHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99999816987686048878888588999999999986448579997
No 322
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=81.82 E-value=4.2 Score=20.71 Aligned_cols=114 Identities=19% Similarity=0.236 Sum_probs=59.8
Q ss_pred CEEEEECCCCCCHHHHHHHH-HHHCCCCH--------HHHHHHHHHHHHHHHHHHHH--HCCCCCC--------CCCCCC
Q ss_conf 64998888877289999999-98578111--------46888999999999999997--1311224--------665578
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLF-FALVPIEK--------KCRLHFYEFMKDVHSRIIMY--RKKIEFG--------EILESD 127 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlF-y~~l~~~~--------K~R~HFh~FM~~ih~~l~~~--~~~~~~~--------~~~~~d 127 (404)
.=+-+-|++|+|||.+..-| |..+.... --.-.|-+.|..+.-.+..+ .++...- ....++
T Consensus 25 s~~li~G~~GtGKsi~~~~~~~~~l~~g~~~~yis~e~t~~~~i~qm~s~g~di~~~~~~G~l~~i~~~~~~~~~~~~~~ 104 (230)
T PRK08533 25 SIILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSSQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEKRD 104 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCHHHHHCCCEEEEECCCCCCCHHHHHH
T ss_conf 48999868998789999999999987898699999438999999999986998179975796799961343354045789
Q ss_pred HHHHHHHH-HHCCCCEEEEEEEE-E--CCCHHHHH--HHHHHHHHHHCCCEEEEECCCC
Q ss_conf 07899999-96138799984232-0--47135888--9999999985496899817868
Q gi|254781047|r 128 PIPLVASS-IALESRVLCFDEFM-I--TNIADAII--LSRLFAALFSHGCIIVMTSNFI 180 (404)
Q Consensus 128 pl~~va~~-l~~~~~lLCfDEF~-V--~DiaDAmi--l~rl~~~lf~~gv~lV~TSN~~ 180 (404)
-|..+... -..+.+++-+|=|- + .|.-.+++ +-..|+.+-..|-+++.|.+..
T Consensus 105 ~L~~ll~~~~~~~~dvIIIDSlS~l~~~~~~~~~~~~~~~~lk~l~s~gktIilTv~p~ 163 (230)
T PRK08533 105 FLDKLMNTRRFYEKDVVIIDSLSSLVSRDASEVQIRDLMAFFKRISSLNKVIILTANPK 163 (230)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 99999732664379899990531885167778999999999999985898899995633
No 323
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=81.80 E-value=1.4 Score=23.69 Aligned_cols=130 Identities=13% Similarity=0.161 Sum_probs=65.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCC--------------HHHHHHHH--HHHHHHHHHHHHHHCCCC-CCCCCCCC--HH
Q ss_conf 9988888772899999999857811--------------14688899--999999999999713112-24665578--07
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIE--------------KKCRLHFY--EFMKDVHSRIIMYRKKIE-FGEILESD--PI 129 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~--------------~K~R~HFh--~FM~~ih~~l~~~~~~~~-~~~~~~~d--pl 129 (404)
+.|-|++|+|||-|+.-..+.+... ..+|+=|- ++...-...|........ ......-| -+
T Consensus 2 i~ITG~pGvGKTTli~kv~~~l~~~~~~v~GF~T~evre~g~R~GF~iv~l~~g~~~~la~~~~~~~~~vGky~v~~~~f 81 (168)
T pfam03266 2 IFITGPPGVGKTTLVKKVIELLKSEGVKVGGFYTPEVREGGRRIGFDIVDLASGERGPLARVGGVSGPRVGKYVVNLEEF 81 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCEECCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCEECHHHH
T ss_conf 89978999889999999999998679707489930212589378999999047826774440688775457716668999
Q ss_pred HHHHHHHH----CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHC-
Q ss_conf 89999996----1387999842320471358889999999985496899817868677523874056689899999850-
Q gi|254781047|r 130 PLVASSIA----LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKK- 204 (404)
Q Consensus 130 ~~va~~l~----~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~- 204 (404)
+.+|-... .+++|+.+||.==--.. +--+.+....+++.+..+++|=.++ .-.||++.|+++
T Consensus 82 e~~~~~~L~~a~~~~dlivIDEIG~mEl~-s~~F~~~v~~~l~~~~~vl~ti~~~------------~~~~~v~~i~~~~ 148 (168)
T pfam03266 82 EEIALPALRRALEEADLIIIDEIGPMELK-SPKFREAIEEVLSSNKPVLAVVHRR------------SDSPLVERIRRRP 148 (168)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCHHHHH-HHHHHHHHHHHHCCCCCEEEEEEEC------------CCCHHHHHHHCCC
T ss_conf 99999999840668989999763145331-4999999999966999799999725------------8983899974179
Q ss_pred -CEEEECC
Q ss_conf -5089804
Q gi|254781047|r 205 -LEIISLD 211 (404)
Q Consensus 205 -~~V~~l~ 211 (404)
+.++++.
T Consensus 149 d~~i~~vt 156 (168)
T pfam03266 149 DVKIFVVT 156 (168)
T ss_pred CCEEEEEC
T ss_conf 93899978
No 324
>KOG3889 consensus
Probab=81.63 E-value=3.5 Score=21.17 Aligned_cols=159 Identities=21% Similarity=0.242 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf 78078999999613879998423204713588899999999854968998178686775238740566898999998505
Q gi|254781047|r 126 SDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKL 205 (404)
Q Consensus 126 ~dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~ 205 (404)
.+|...--..+..+.+.+-||==++.- ...=|..+.+.|...||++|- |.+|--=-- -+--++-.|-.+.+--.|
T Consensus 96 ~~~~~lWNs~i~q~erhlrfd~p~~~~--s~~~l~sf~~nlv~YGi~fvd--~V~pT~e~T-Ekl~~r~~pv~~TffG~m 170 (371)
T KOG3889 96 NKIYELWNSSISQKERHLRFDVPRISK--STLSLQSFSKNLVKYGIIFVD--GVEPTSEAT-EKLCQRLVPVHDTFFGQM 170 (371)
T ss_pred CCCCCCHHHHHHHHCCCCCCCCHHHHH--CCHHHHHHHHHHHHEEEEEEC--CCCCHHHHH-HHHHHHHHHHHHHHHHEE
T ss_conf 663001236777531366777325532--557899999988862179975--888526899-999987657887450225
Q ss_pred EEEECC---CCCHHHHCCCC--CCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEECCC-----CCCCC
Q ss_conf 089804---73112211236--783022035302268999999986044446776327636808996122-----02111
Q gi|254781047|r 206 EIISLD---SGQDYRRKEQS--ILPIYMTPLNSYNRVLMDKLWAHITKGKKSLSLNISTEGGYEIHVPFF-----CSRVS 275 (404)
Q Consensus 206 ~V~~l~---~~~DYR~~~~~--~~~~y~~p~~~~~~~~l~~~f~~l~~~~~~~~~~i~v~~gR~i~v~~~-----~~~va 275 (404)
=++.=+ +++-|-+..+. -.++||...- .- +.|.-++. .-.+|+++-+... -.+-+
T Consensus 171 W~Fsd~p~~~DTAYtkl~lg~HTD~TYF~~~~--Gi----QvfHCl~h---------~gtGG~t~lVDgfy~ae~l~~~~ 235 (371)
T KOG3889 171 WVFSDEPAYEDTAYTKLELGPHTDGTYFDQTP--GI----QVFHCLTH---------AGTGGDTVLVDGFYCAEKLRNES 235 (371)
T ss_pred EEECCCCCCCCCCCEEEEECCCCCCCEECCCC--CC----EEEEEECC---------CCCCCCEEEEEHHHHHHHHHHHC
T ss_conf 78527876454200001104668886623687--72----68984123---------68788438982278899997638
Q ss_pred CCCHHHHHHHHCCHHHHHHHHH--HCCEEEEC
Q ss_conf 1019998521024689999985--37889981
Q gi|254781047|r 276 RFSFFDLCDRPLSANDFVEIAN--RFDVVIIN 305 (404)
Q Consensus 276 ~f~F~eLC~~~lg~~DYi~Ia~--~f~ti~I~ 305 (404)
--+|+-||..+.+ ..||+=+. ++|++-|+
T Consensus 236 Pe~feiLc~v~i~-heYiE~~ge~h~H~v~~~ 266 (371)
T KOG3889 236 PEDFEILCNVKIS-HEYIEGSGESHIHSVSLE 266 (371)
T ss_pred HHHHHHHHCCCCC-HHHHCCCCCCCCEEECCC
T ss_conf 3766686468666-053137886431020467
No 325
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=81.28 E-value=2.6 Score=22.05 Aligned_cols=45 Identities=13% Similarity=0.321 Sum_probs=34.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 86499888887728999999998578111468889999999999999
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRII 112 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~ 112 (404)
++=+-+-|=+|+|||-+++..-.-+ ...| -+-|-++|.++..+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~~~-ivNyG~~Mle~A~k~g 48 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL-VKHK-IVNYGDLMLEIAKKKG 48 (189)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH-HHCE-EEEHHHHHHHHHHHHC
T ss_conf 5599997579887266999999877-5220-0007699999999838
No 326
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=81.10 E-value=3.7 Score=21.08 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 886499888887728999999998578
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
.-|++.|-|++|+|||-|-=..-+.+-
T Consensus 49 aGraiLlaGppGTGKTAlA~aiakeLG 75 (395)
T pfam06068 49 AGRAVLIAGPPGTGKTALAIAISKELG 75 (395)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 773899877999888999999999748
No 327
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=81.09 E-value=4.4 Score=20.55 Aligned_cols=53 Identities=13% Similarity=0.223 Sum_probs=43.2
Q ss_pred HHHHHHHHHCCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf 789999996138799984232-047135888999999998549689981786867
Q gi|254781047|r 129 IPLVASSIALESRVLCFDEFM-ITNIADAIILSRLFAALFSHGCIIVMTSNFIPE 182 (404)
Q Consensus 129 l~~va~~l~~~~~lLCfDEF~-V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~ 182 (404)
-..+|..++.+-++|++||=- =-|+.-..-+..++..+ .++.+++.||-...+
T Consensus 141 rl~la~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l-~~~~TillssH~l~e 194 (301)
T TIGR03522 141 RVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNI-GKDKTIILSTHIMQE 194 (301)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCHHH
T ss_conf 599889870799899994886678989999999999987-599999998785899
No 328
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.60 E-value=4.6 Score=20.45 Aligned_cols=24 Identities=25% Similarity=0.384 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 499888887728999999998578
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
=+-|-|+-|+|||-|+.+...-.+
T Consensus 37 ~vaiiG~sGsGKSTLl~ll~Gl~~ 60 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999979999999964979
No 329
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=80.43 E-value=4.7 Score=20.41 Aligned_cols=115 Identities=20% Similarity=0.250 Sum_probs=60.9
Q ss_pred CCCE--EEEECCCCCCHHHHHHHHHHHCCCCH----------------HHH-----------------------------
Q ss_conf 8864--99888887728999999998578111----------------468-----------------------------
Q gi|254781047|r 65 SMQG--IYLHGDVGQGKSMLMNLFFALVPIEK----------------KCR----------------------------- 97 (404)
Q Consensus 65 ~~kG--lYL~G~VG~GKT~LMdlFy~~l~~~~----------------K~R----------------------------- 97 (404)
-+.| +=|-|.-|+|||-|+.++-.-.+... ..|
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~ 575 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEAT 575 (709)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHEEEECCCCHHHCCCHHHHHHCCCCCCC
T ss_conf 67998899987999988999999836788888559999872786699999865468746653204739879746899999
Q ss_pred ---HHHHHHHHHHHHHHHHHHC-------CCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEE--EECCCHHHHHHHHHHHH
Q ss_conf ---8899999999999999713-------11224665578078999999613879998423--20471358889999999
Q gi|254781047|r 98 ---LHFYEFMKDVHSRIIMYRK-------KIEFGEILESDPIPLVASSIALESRVLCFDEF--MITNIADAIILSRLFAA 165 (404)
Q Consensus 98 ---~HFh~FM~~ih~~l~~~~~-------~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF--~V~DiaDAmil~rl~~~ 165 (404)
+-=--.|..+|+.+.++-. ..+..-++.--=...+|..+..+-++|-+||= .++..+.+-|+..|-+.
T Consensus 576 ~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~ 655 (709)
T COG2274 576 DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI 655 (709)
T ss_pred HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 79999999983768999836054562320489888888999999999854699989970742236986799999999998
Q ss_pred HHHCCCEEEEECCCCH
Q ss_conf 9854968998178686
Q gi|254781047|r 166 LFSHGCIIVMTSNFIP 181 (404)
Q Consensus 166 lf~~gv~lV~TSN~~P 181 (404)
. .|.++|.-+-|++
T Consensus 656 ~--~~~T~I~IaHRl~ 669 (709)
T COG2274 656 L--QGRTVIIIAHRLS 669 (709)
T ss_pred H--CCCEEEEEECCCH
T ss_conf 4--5886999976616
No 330
>PRK13695 putative NTPase; Provisional
Probab=80.39 E-value=1.8 Score=23.08 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 499888887728999999998578
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
=+.|-|.+|+|||-|+.-..+.+.
T Consensus 5 kI~iTG~PGvGKTTli~Kv~~~L~ 28 (174)
T PRK13695 5 RIGITGMPGVGKTTLVLKIAELLA 28 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999878999889999999999986
No 331
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=80.33 E-value=4.7 Score=20.39 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=45.7
Q ss_pred HHHHHHHCCCCEEEEEEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEE
Q ss_conf 99999961387999842320-47135888999999998549689981786867752387405668989999985050898
Q gi|254781047|r 131 LVASSIALESRVLCFDEFMI-TNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIIS 209 (404)
Q Consensus 131 ~va~~l~~~~~lLCfDEF~V-~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~ 209 (404)
.+|+.+.++..++.|||=-- -|+-.+-|+...+..+++..+++++|-- . ..+++-=.|+-
T Consensus 466 aLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHr-l------------------~~~~~~D~I~v 526 (559)
T COG4988 466 ALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHR-L------------------EDAADADRIVV 526 (559)
T ss_pred HHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECC-H------------------HHHHCCCEEEE
T ss_conf 9999855888889854875679876799999999999727869999767-3------------------77854998999
Q ss_pred CCCCC
Q ss_conf 04731
Q gi|254781047|r 210 LDSGQ 214 (404)
Q Consensus 210 l~~~~ 214 (404)
||.|+
T Consensus 527 ld~G~ 531 (559)
T COG4988 527 LDNGR 531 (559)
T ss_pred ECCCC
T ss_conf 64883
No 332
>PRK06851 hypothetical protein; Provisional
Probab=80.17 E-value=1.3 Score=23.94 Aligned_cols=42 Identities=24% Similarity=0.216 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 3332256643102466666688649988888772899999999857
Q gi|254781047|r 45 QEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLFFALV 90 (404)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l 90 (404)
...|+.|.+-.... ...-|=+.|=||+|+|||-||.-.-+..
T Consensus 14 T~~GF~S~~~~i~~----~~~~ri~ilKGGpGtGKStlmK~ig~~~ 55 (368)
T PRK06851 14 TARGFYSLYDSILP----GDANRIFILKGGPGTGKSTLMKKIGEEF 55 (368)
T ss_pred CCCCHHHHHHHHCC----CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 77427888875425----6512799996899977899999999999
No 333
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=79.86 E-value=3.8 Score=21.00 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=19.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 6886499888887728999999998
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFA 88 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~ 88 (404)
++.+=+.|-|+||=|||.|+.-..+
T Consensus 30 ~~~~lIfLCGSvGDGKShILs~~k~ 54 (504)
T TIGR03238 30 PSSSLLFLCGSSGDGKSEILAENKR 54 (504)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 9774899965888868999999889
No 334
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=79.70 E-value=2.6 Score=22.07 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=13.9
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 998888877289999999
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLF 86 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlF 86 (404)
+++-||++.|||-.---.
T Consensus 4 ~LVtGG~rSGKS~~AE~l 21 (170)
T PRK05800 4 ILVTGGARSGKSRFAERL 21 (170)
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999798763489999999
No 335
>KOG0990 consensus
Probab=79.69 E-value=2 Score=22.69 Aligned_cols=90 Identities=19% Similarity=0.146 Sum_probs=51.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH-----------
Q ss_conf 499888887728999999998578111468889999999999999971311224665578078999999-----------
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI----------- 136 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l----------- 136 (404)
-+|.||++|.|||=-|...-..+..+++-+ -|. .+|+. ..++++..|...+
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~-----~m~---lelna----------Sd~rgid~vr~qi~~fast~~~~~ 125 (360)
T KOG0990 64 HLLFYGPPGTGKTSTILANARDFYSPHPTT-----SML---LELNA----------SDDRGIDPVRQQIHLFASTQQPTT 125 (360)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCCCH-----HHH---HHHHC----------CCCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 534348998899873666566505899824-----699---98643----------676688614788898776416400
Q ss_pred ---HCCCCEEEEEEEEECCCHHHHH------HHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf ---6138799984232047135888------999999998549689981786867
Q gi|254781047|r 137 ---ALESRVLCFDEFMITNIADAII------LSRLFAALFSHGCIIVMTSNFIPE 182 (404)
Q Consensus 137 ---~~~~~lLCfDEF~V~DiaDAmi------l~rl~~~lf~~gv~lV~TSN~~P~ 182 (404)
....+++-+|| ||||- |.|..+.+ ..+..+.+-+|.+-.
T Consensus 126 fst~~~fKlvILDE------ADaMT~~AQnALRRviek~-t~n~rF~ii~n~~~k 173 (360)
T KOG0990 126 YSTHAAFKLVILDE------ADAMTRDAQNALRRVIEKY-TANTRFATISNPPQK 173 (360)
T ss_pred CCCCCCEEEEEECC------HHHHHHHHHHHHHHHHHHH-CCCEEEEEECCCHHH
T ss_conf 02467615887334------1376698999999999871-332379986167644
No 336
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=79.64 E-value=5 Score=20.25 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 4998888877289999999985781
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
=+=|-|+-|.|||-|+.+..-.++.
T Consensus 34 i~~iiG~nGaGKSTLl~~i~G~~~p 58 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSARLAP 58 (258)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9999888998899999998567888
No 337
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=79.42 E-value=2.3 Score=22.42 Aligned_cols=28 Identities=21% Similarity=0.451 Sum_probs=22.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 8649988888772899999999857811
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIE 93 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~ 93 (404)
.+-+-+-|+-|.|||-+|+.+-+.+|..
T Consensus 162 r~NIlIsGgTGSGKTTllnALl~~IP~~ 189 (343)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPPQ 189 (343)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 9889998889861999999999628965
No 338
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=79.42 E-value=5 Score=20.21 Aligned_cols=131 Identities=12% Similarity=0.168 Sum_probs=68.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCHHHH-------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHC---
Q ss_conf 99888887728999999998578111468-------88999999999999997131122466557807899999961---
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIEKKCR-------LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIAL--- 138 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~~K~R-------~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~--- 138 (404)
-||.-| |.||+-+.-.|-..+-+..+.- -.-..++..-|-.++..... +.....|-+..+.+.+..
T Consensus 26 AyLf~G-~~Gk~~~A~~~A~~l~C~~~~~~~pCg~C~~C~~i~~~~hpDv~~i~~~---~~~I~vd~IR~l~~~~~~~~~ 101 (290)
T PRK07276 26 AYLFSG-DFASFEMALFLAQSLFCEQKEDVLPCGHCRSCRLIEQGDFSDVTVIEPQ---GQVIKTDTIRELTANFSQSGY 101 (290)
T ss_pred EEECCC-CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCEEECCC---CCCCCHHHHHHHHHHHHHCCC
T ss_conf 542169-8687999999999981899999898988999999876999871377167---775768899999999844561
Q ss_pred --CCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHH
Q ss_conf --387999842320471358889999999985496899817868677523874056689899999850508980473112
Q gi|254781047|r 139 --ESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDY 216 (404)
Q Consensus 139 --~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DY 216 (404)
..+|.-+|+.+--....|=-|=++++.=-..-+++..|+|. + +.+| .|..+|.++++....|+
T Consensus 102 ~g~~KV~II~~Ad~mt~~AaNaLLK~LEEPp~~t~~iLlt~~~--~----------~lLp---TI~SRCQ~i~fp~~~~~ 166 (290)
T PRK07276 102 EGKRQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDE--N----------KVLP---TIKSRTQIFHFPKNEAY 166 (290)
T ss_pred CCCEEEEEECCHHHCCHHHHHHHHHHHCCCCCCCEEEEEECCH--H----------HCCH---HHHHCCCCCCCCCCHHH
T ss_conf 3782799977656529999999999703898883799887992--5----------4937---88736601028996799
Q ss_pred HH
Q ss_conf 21
Q gi|254781047|r 217 RR 218 (404)
Q Consensus 217 R~ 218 (404)
-.
T Consensus 167 l~ 168 (290)
T PRK07276 167 LY 168 (290)
T ss_pred HH
T ss_conf 99
No 339
>PRK13909 putative recombination protein RecB; Provisional
Probab=79.31 E-value=5.1 Score=20.19 Aligned_cols=41 Identities=20% Similarity=0.152 Sum_probs=33.4
Q ss_pred HHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 07899999961387999842320471358889999999985
Q gi|254781047|r 128 PIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFS 168 (404)
Q Consensus 128 pl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~ 168 (404)
+-+.+...+-..++-+.+||||=||..=.-|+..|+..+..
T Consensus 314 ~~~~l~~rl~~~~~~ilVDEFQDTn~~Q~~il~~L~~~~~~ 354 (911)
T PRK13909 314 DKDFLYFRLDSKISHILIDEFQDTSLLQYKILLPLIDEIKS 354 (911)
T ss_pred CHHHHHHHHHCCCCEEEEEHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 26899999860576899640024899999999999987623
No 340
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=79.24 E-value=0.91 Score=24.92 Aligned_cols=11 Identities=36% Similarity=0.625 Sum_probs=6.3
Q ss_pred EECCCCCCHHH
Q ss_conf 88888772899
Q gi|254781047|r 71 LHGDVGQGKSM 81 (404)
Q Consensus 71 L~G~VG~GKT~ 81 (404)
|||++|.|||=
T Consensus 17 iYGp~G~GKTn 27 (223)
T TIGR02237 17 IYGPPGSGKTN 27 (223)
T ss_pred EECCCCCCHHH
T ss_conf 87589986789
No 341
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=79.13 E-value=4.8 Score=20.35 Aligned_cols=88 Identities=17% Similarity=0.181 Sum_probs=47.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHH
Q ss_conf 77898999999999999999861354333225664310246666668864998888877289999999985781114688
Q gi|254781047|r 19 LKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRL 98 (404)
Q Consensus 19 i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~ 98 (404)
++.-+.|.++++++.+ ..+ ..++.+.|.|||++|-..-..+... .+|+
T Consensus 2 ~~LR~yQ~~a~~~~~~------------------------------~~~-~~i~~pTGsGKT~~~~~~i~~~~~~-~~~~ 49 (103)
T pfam04851 2 LELRPYQIEAIRNLLE------------------------------KKR-GLIVMATGSGKTLTAAKLIARLLKG-KKKV 49 (103)
T ss_pred CCCCHHHHHHHHHHHH------------------------------CCC-EEEEECCCCCHHHHHHHHHHHHHHC-CCCE
T ss_conf 9872999999999996------------------------------398-6999589998799999999999846-9929
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 89999999999999971311224665578078999999613879998423204713588899999999
Q gi|254781047|r 99 HFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAAL 166 (404)
Q Consensus 99 HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~l 166 (404)
=| -=|-..++++..++. ++.+||-|-.- |+.+ ..++++.+
T Consensus 50 lv-------------------------lvp~~~L~~Q~~~~~-lii~DE~H~~~-a~~~-~~~l~~~~ 89 (103)
T pfam04851 50 LF-------------------------LVPRKDLLEQALEEF-VIIIDEAHHSS-AKTK-YRKILEYF 89 (103)
T ss_pred EE-------------------------EECCHHHHHHHHHHH-HHHHHHHHHCC-CHHH-HHHHHHHC
T ss_conf 99-------------------------908299999999965-64601635235-3789-99999957
No 342
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=79.04 E-value=5.2 Score=20.13 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 88649988888772899999999857811
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIE 93 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~ 93 (404)
.+.-+-|-|+-|+|||+|....-..+..+
T Consensus 108 ~KsNILliGPTG~GKTlla~tLAk~l~vP 136 (411)
T PRK05342 108 QKSNILLIGPTGSGKTLLAQTLARILNVP 136 (411)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 34538998999977889999999986999
No 343
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=78.92 E-value=2.6 Score=22.05 Aligned_cols=114 Identities=16% Similarity=0.180 Sum_probs=75.7
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 68089961220211110199985210246899999853788998189878724638999899999998228982899807
Q gi|254781047|r 261 GGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSE 340 (404)
Q Consensus 261 ~gR~i~v~~~~~~va~f~F~eLC~~~lg~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~ 340 (404)
.|-++.+...-..-+.++|++||-.+-....+..+.++=+.++|=-=|.=+ .+. --.-+++-.+-....+ +++.+
T Consensus 219 ~GEkvVlRil~~~~~~l~l~~Lg~~~~~~~~~~~~~~~p~GliLvTGPTGS--GKT--TTLY~~L~~ln~~~~n-I~TiE 293 (500)
T COG2804 219 YGEKVVLRILDKDQVILDLEKLGMSPFQLARLLRLLNRPQGLILVTGPTGS--GKT--TTLYAALSELNTPERN-IITIE 293 (500)
T ss_pred CCCEEEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHCCCEEEEEECCCCC--CHH--HHHHHHHHHHCCCCCE-EEEEE
T ss_conf 785789998333124688878389988999999997289708999689999--889--9999999986278850-89840
Q ss_pred CCHHHHCCC------------------------------------------------CC-------CCCCHHHHHHHHHH
Q ss_conf 897880134------------------------------------------------67-------65313489989887
Q gi|254781047|r 341 ENIEDLFPY------------------------------------------------KL-------RKGAFEIQRTVSRL 365 (404)
Q Consensus 341 ~~~~~L~~~------------------------------------------------~~-------~~~~F~f~Rt~SRL 365 (404)
.|+|-...+ || +.. +-.=++.||
T Consensus 294 DPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD~ETAeiavqAalTGHLVlSTlHtn--da~~ai~RL 371 (500)
T COG2804 294 DPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRDLETAEIAVQAALTGHLVLSTLHTN--DAPGAITRL 371 (500)
T ss_pred CCEEEECCCCCEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCC--CHHHHHHHH
T ss_conf 780451598515631403599789999998665998599835577889999999984288676610217--658899999
Q ss_pred HHHCCHHHHHHCCCCC
Q ss_conf 4524278897244426
Q gi|254781047|r 366 YEMFSAQYIGKNKIII 381 (404)
Q Consensus 366 ~EMqS~~yl~~~~~~~ 381 (404)
.||+=+.|+-..++..
T Consensus 372 ~~mGv~~~~l~s~l~g 387 (500)
T COG2804 372 LEMGVEPYLLASSLLG 387 (500)
T ss_pred HHCCCCHHHHHHHHHH
T ss_conf 9849988999999999
No 344
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=78.64 E-value=1.8 Score=23.07 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=16.7
Q ss_pred CCEEE-EECCCCCCHHHH-HHHHHHH
Q ss_conf 86499-888887728999-9999985
Q gi|254781047|r 66 MQGIY-LHGDVGQGKSML-MNLFFAL 89 (404)
Q Consensus 66 ~kGlY-L~G~VG~GKT~L-MdlFy~~ 89 (404)
+..++ |+|+.|+|||-| |.+...+
T Consensus 18 ~G~itEi~G~~GsGKTql~lqla~~~ 43 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 78799999999984999999999998
No 345
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=78.55 E-value=5.3 Score=20.04 Aligned_cols=70 Identities=16% Similarity=0.187 Sum_probs=39.7
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 99999997488778989999999999999998613543332256643102466666688649988888772899999999
Q gi|254781047|r 8 SRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLFF 87 (404)
Q Consensus 8 ~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlFy 87 (404)
......+.+--+--+.+-..+..+|-.=|.+. +- ....+..-.|+-+-+-|+-|+|||.|.--.-
T Consensus 7 ~eIv~~LD~yIIGQ~~AKkavAVAlrNr~RR~---~l------------~~~lr~Ei~pkNILmIGPTGvGKTeIARrLA 71 (442)
T PRK05201 7 REIVSELDKYIIGQDDAKRAVAIALRNRWRRM---QL------------PEELRDEVTPKNILMIGPTGVGKTEIARRLA 71 (442)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH---CC------------CCCCCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 99999853601082776678777887778753---16------------6221233464316887888866789999999
Q ss_pred HHCCC
Q ss_conf 85781
Q gi|254781047|r 88 ALVPI 92 (404)
Q Consensus 88 ~~l~~ 92 (404)
..+..
T Consensus 72 kl~~a 76 (442)
T PRK05201 72 KLANA 76 (442)
T ss_pred HHHCC
T ss_conf 98489
No 346
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=78.41 E-value=1.7 Score=23.15 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=18.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 649988888772899999999857
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALV 90 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l 90 (404)
+=.-|.||.|+|||.||.+.-..+
T Consensus 17 QR~gI~g~~gvGKT~Ll~~i~~~~ 40 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAI 40 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 677887899988999999999999
No 347
>pfam00493 MCM MCM2/3/5 family.
Probab=78.40 E-value=2.3 Score=22.39 Aligned_cols=24 Identities=38% Similarity=0.600 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 499888887728999999998578
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
-+-|-|++|+|||.|+.......|
T Consensus 59 hiLLvGdPG~gKSqlLk~~~~~~p 82 (327)
T pfam00493 59 NVLLVGDPGTAKSQLLKYVAKLAP 82 (327)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 189846998156099999998688
No 348
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=77.97 E-value=5.6 Score=19.93 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 4998888877289999999985781
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
=+=|-|+-|.|||-|+.++.-.++.
T Consensus 28 i~gliG~nGaGKSTL~~~i~Gl~~p 52 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFLRP 52 (236)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9999989997399999999679878
No 349
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.58 E-value=5.7 Score=19.86 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 499888887728999999998578
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
=+=|-|+-|+|||-|+.+..--.+
T Consensus 30 ~~~iiGpSGsGKSTll~~i~Gl~~ 53 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999779999999976999
No 350
>TIGR01249 pro_imino_pep_1 proline iminopeptidase; InterPro: IPR005944 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of serine peptidase belong to MEROPS peptidase family S33 (clan SC). They are proline iminopeptidase (Prolyl aminopeptidase, 3.4.11.5 from EC), which catalyzes the removal of the N-terminal proline from peptides. This family represents one of two related families of proline iminopeptidase containing the alpha/beta fold. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members. ; GO: 0016804 prolyl aminopeptidase activity, 0005737 cytoplasm.
Probab=77.35 E-value=1.2 Score=24.15 Aligned_cols=109 Identities=18% Similarity=0.218 Sum_probs=51.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH--HHHCCCC--CCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf 499888887728999999998578111468889999999999999--9713112--246655780789999996138799
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRII--MYRKKIE--FGEILESDPIPLVASSIALESRVL 143 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~--~~~~~~~--~~~~~~~dpl~~va~~l~~~~~lL 143 (404)
=||||||+|.|=. ++.||+|==++. |+- -.||..+ ...-..+|--...+.++-+=-.-|
T Consensus 30 V~~lHGGPGsGt~------------~~~r~fFdpe~~-----rIvL~DQRGcGkS~p~a~~~eNtTWdLV~DiEkLR~~L 92 (310)
T TIGR01249 30 VVFLHGGPGSGTD------------PECRRFFDPETY-----RIVLLDQRGCGKSTPHACLEENTTWDLVADIEKLREKL 92 (310)
T ss_pred EEEEECCCCCCCC------------CCCCCCCCCCCE-----EEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 8997568789988------------344645376635-----89998307888986243322477056674399999862
Q ss_pred EEEEEEE-----------------CCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCC-------CHHHHHHHHH
Q ss_conf 9842320-----------------471358889999999985496899817868677523874-------0566898999
Q gi|254781047|r 144 CFDEFMI-----------------TNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEI-------NRNVLVSFIE 199 (404)
Q Consensus 144 CfDEF~V-----------------~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GL-------qR~~FlPfI~ 199 (404)
=|-+-+| .+..+-++|+.+| |.=. .--+.+|.+|+ +.++|.-.|.
T Consensus 93 ~I~~W~vFGGSWGStLALaYAq~HP~~v~~lvLRgiF---------L~R~--~e~~w~~~~G~~~~~YP~~w~~F~d~IP 161 (310)
T TIGR01249 93 GIKKWLVFGGSWGSTLALAYAQTHPEKVTGLVLRGIF---------LLRE--KELSWFYEGGLASMIYPDAWQRFVDSIP 161 (310)
T ss_pred CCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHH---------HCCH--HHHHHHHHCCCCCCCCCHHHHHHHCCCC
T ss_conf 8971488538778999999860162465355655676---------3286--6789997268702347255665410587
Q ss_pred HHHHC
Q ss_conf 99850
Q gi|254781047|r 200 LLEKK 204 (404)
Q Consensus 200 ~lk~~ 204 (404)
--+++
T Consensus 162 ~~~r~ 166 (310)
T TIGR01249 162 ENERN 166 (310)
T ss_pred CCCCC
T ss_conf 40136
No 351
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=77.07 E-value=3.2 Score=21.44 Aligned_cols=133 Identities=11% Similarity=0.080 Sum_probs=72.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHH------H-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 88649988888772899999999857811146------8-8899999999999999713112246655780789999996
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKC------R-LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIA 137 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~------R-~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~ 137 (404)
-|-++-+.|+.|.||.-+...|-..+-+..+. . -.=.-+...-|-.+|......+ +....-|-|..+.+.+.
T Consensus 23 l~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~~C~l~~~~~HPD~~~i~pe~~-~~~I~IdqIR~l~~~~~ 101 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KSSLGVDAVREVTEKLY 101 (334)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCC-CCCCCHHHHHHHHHHHH
T ss_conf 10467547999988999999999998189999999999997899986689998477534223-45599999999999984
Q ss_pred -----CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf -----138799984232047135888999999998549689981786867752387405668989999985050898047
Q gi|254781047|r 138 -----LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS 212 (404)
Q Consensus 138 -----~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~ 212 (404)
...+|+-+|+-+--+++-|=-|=+.+|.= -.++++|.+|+.+ + +.+| .|..+|.++++..
T Consensus 102 ~~~~~g~~kV~iI~~Ae~mn~~AaNaLLKtLEEP-p~~t~~iL~t~~~-~----------~lLp---TI~SRCq~~~~~~ 166 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLTDAAANALLKTLEEP-PEKTWFFLACREP-A----------RLLA---TLRSRCRLHYLAP 166 (334)
T ss_pred HCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCC-CCCEEEEEECCCH-H----------HCCC---HHHHHCCCCCCCC
T ss_conf 3665699479997667775999999999861279-9884999866985-6----------5723---8875230415899
Q ss_pred C
Q ss_conf 3
Q gi|254781047|r 213 G 213 (404)
Q Consensus 213 ~ 213 (404)
.
T Consensus 167 ~ 167 (334)
T PRK07993 167 P 167 (334)
T ss_pred C
T ss_conf 7
No 352
>pfam04310 MukB MukB N-terminal. This family represents the N-terminal region of MukB, one of a group of bacterial proteins essential for the movement of nucleoids from mid-cell towards the cell quarters (i.e. chromosome partitioning). The structure of the N-terminal domain consists of an antiparallel six-stranded beta sheet surrounded by one helix on one side and by five helices on the other side. It contains an exposed Walker A loop in an unexpected helix-loop-helix motif (in other proteins, Walker A motifs generally adopt a P loop conformation as part of a strand-loop-helix motif embedded in a conserved topology of alternating helices and (parallel) beta strands).
Probab=77.04 E-value=1 Score=24.62 Aligned_cols=33 Identities=36% Similarity=0.466 Sum_probs=27.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 4998888877289999999985781114688899
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY 101 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh 101 (404)
=.-|-|+=|.|||-+|..|+-++ ++.-+.+||-
T Consensus 29 vttLsG~NGAGKsT~m~Af~tal-IPDl~~l~fr 61 (227)
T pfam04310 29 VTTLSGGNGAGKSTTMAAFITAL-IPDLSLLHFR 61 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCCCEEEEEC
T ss_conf 68864478765487999999986-6664388621
No 353
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=76.96 E-value=5.9 Score=19.75 Aligned_cols=135 Identities=12% Similarity=0.160 Sum_probs=70.2
Q ss_pred EEEEECCCCCCHHHHHHHHH-HHCCCC------HHHHHHHHHHHHHHHHHHHHHHCCC-----CCCC-CCCCCHHH----
Q ss_conf 49988888772899999999-857811------1468889999999999999971311-----2246-65578078----
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFF-ALVPIE------KKCRLHFYEFMKDVHSRIIMYRKKI-----EFGE-ILESDPIP---- 130 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy-~~l~~~------~K~R~HFh~FM~~ih~~l~~~~~~~-----~~~~-~~~~dpl~---- 130 (404)
-+-|-|+.|+|||-..=.++ +.-... .=||+-=..-=..|-+++.+--|.. .... .....-|.
T Consensus 22 ~~vl~a~tGsGKtTqvP~~ll~~~~~~g~I~~~qPRR~AA~s~A~RvA~e~~e~~G~~VGY~vR~e~~~s~~Tri~~~T~ 101 (812)
T PRK11664 22 QVLLKAPTGAGKSTWLPLQLLQQGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKVGPNTRLEVVTE 101 (812)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEECH
T ss_conf 79999089999899999999964688993899388399999999999997299999867578256778899857999755
Q ss_pred ------HHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHH--HHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf ------999999613879998423204713588899999999--854968998178686775238740566898999998
Q gi|254781047|r 131 ------LVASSIALESRVLCFDEFMITNIADAIILSRLFAAL--FSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLE 202 (404)
Q Consensus 131 ------~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~l--f~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk 202 (404)
...+-...++..+-|||||=.++.--.+|+=+.+.. ....+.||..|-+.-.+.+.+ + -
T Consensus 102 GiLlr~l~~dp~L~~~~~vI~DE~HER~l~~Dl~l~l~~~~~~~~r~dLklvvMSATld~~~~~~---------~----~ 168 (812)
T PRK11664 102 GILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQ---------L----L 168 (812)
T ss_pred HHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH---------H----C
T ss_conf 89999972497767788899957546875189999999999986189828999847888488997---------5----8
Q ss_pred HCCEEEECCCCCHH
Q ss_conf 50508980473112
Q gi|254781047|r 203 KKLEIISLDSGQDY 216 (404)
Q Consensus 203 ~~~~V~~l~~~~DY 216 (404)
..|.|++..| +-|
T Consensus 169 ~~~~~i~~~g-r~f 181 (812)
T PRK11664 169 PDAPYIESEG-RSF 181 (812)
T ss_pred CCCCEEEECC-CCC
T ss_conf 9998898787-433
No 354
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=76.52 E-value=2.2 Score=22.44 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=21.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 886499888887728999999998578
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
.-||+.+-||+|+|||-|-=..-+.+-
T Consensus 64 aGrgiLi~GppgTGKTAlA~gIa~eLG 90 (450)
T COG1224 64 AGRGILIVGPPGTGKTALAMGIARELG 90 (450)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 661799978999768899999999858
No 355
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=76.47 E-value=6.1 Score=19.67 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=43.9
Q ss_pred HHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCC-CEEEEECCCCH
Q ss_conf 8999999613879998423-2047135888999999998549-68998178686
Q gi|254781047|r 130 PLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHG-CIIVMTSNFIP 181 (404)
Q Consensus 130 ~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~g-v~lV~TSN~~P 181 (404)
..+|..|+.+.++|++||= -=-|+.-+..+..++..+-+.| .++++||-..-
T Consensus 145 l~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~ 198 (293)
T COG1131 145 LSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE 198 (293)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH
T ss_conf 999999966999999969977879999999999999999679959999838869
No 356
>PRK10689 transcription-repair coupling factor; Provisional
Probab=76.32 E-value=6.2 Score=19.64 Aligned_cols=24 Identities=13% Similarity=-0.072 Sum_probs=12.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 499888887728999999998578
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
-..+-|=.|..+++++..++...+
T Consensus 16 ~~~l~gL~GSA~al~lA~l~~~~~ 39 (1148)
T PRK10689 16 QRQLGELTGAACATLVAEIAERHA 39 (1148)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 126778860699999999999709
No 357
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=76.32 E-value=3.5 Score=21.25 Aligned_cols=31 Identities=10% Similarity=0.143 Sum_probs=17.8
Q ss_pred CCCHHHHHCCCCCHHHHHHHHHHH-HHCCEEE
Q ss_conf 868677523874056689899999-8505089
Q gi|254781047|r 178 NFIPENLYKDEINRNVLVSFIELL-EKKLEII 208 (404)
Q Consensus 178 N~~P~dLY~~GLqR~~FlPfI~~l-k~~~~V~ 208 (404)
...+++|-..|-..+....|+... +.+..++
T Consensus 112 ~~tl~~L~~~g~~~~~~~~~L~~~v~~~~~il 143 (283)
T pfam00437 112 SLTLDDLGMTGAFDADIAEFLRQAVQARGNIL 143 (283)
T ss_pred CCCHHHHCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 89999973897785999999999998197599
No 358
>KOG0480 consensus
Probab=75.90 E-value=3.7 Score=21.08 Aligned_cols=252 Identities=17% Similarity=0.229 Sum_probs=122.5
Q ss_pred CCCCCE---EEEECCCCCCHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC------HH
Q ss_conf 668864---9988888772899999999857811----1468889999999999999971311224665578------07
Q gi|254781047|r 63 YCSMQG---IYLHGDVGQGKSMLMNLFFALVPIE----KKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESD------PI 129 (404)
Q Consensus 63 ~~~~kG---lYL~G~VG~GKT~LMdlFy~~l~~~----~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~d------pl 129 (404)
..+.|| +-|-|++|.|||=++..-.+-+|-. .|- ....+......+| .|
T Consensus 372 g~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGka------------------SSaAGLTaaVvkD~esgdf~i 433 (764)
T KOG0480 372 GTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKA------------------SSAAGLTAAVVKDEESGDFTI 433 (764)
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEECCCC------------------CCCCCCEEEEEECCCCCCEEE
T ss_conf 86546773189957997138899999865487315850763------------------443464689976377773355
Q ss_pred HHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCC-----CEEEEECCCCHHHHHC-----CCCCHHHHH----
Q ss_conf 89999996138799984232047135888999999998549-----6899817868677523-----874056689----
Q gi|254781047|r 130 PLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHG-----CIIVMTSNFIPENLYK-----DEINRNVLV---- 195 (404)
Q Consensus 130 ~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~g-----v~lV~TSN~~P~dLY~-----~GLqR~~Fl---- 195 (404)
+. ..-+..+.-+.|+|||-=-|+.|-.-| ++++=++- .-++||=|.--.-|-. +-.+|.+=+
T Consensus 434 EA-GALmLADnGICCIDEFDKMd~~dqvAi---hEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi 509 (764)
T KOG0480 434 EA-GALMLADNGICCIDEFDKMDVKDQVAI---HEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENI 509 (764)
T ss_pred EC-CCEEECCCCEEEECHHCCCCHHHHHHH---HHHHHHHEEHHEECCEEEEECCHHHHHHHCCCCCCCCCCCCCHHHHC
T ss_conf 34-737881696688310003570768999---99987510003302068862223555553277677455330066522
Q ss_pred HHHHHHHHCCEEEE-----CCCCCHHHHC--------CCCCC--C----------------EEEEC-CCHHHHHHHHHHH
Q ss_conf 89999985050898-----0473112211--------23678--3----------------02203-5302268999999
Q gi|254781047|r 196 SFIELLEKKLEIIS-----LDSGQDYRRK--------EQSIL--P----------------IYMTP-LNSYNRVLMDKLW 243 (404)
Q Consensus 196 PfI~~lk~~~~V~~-----l~~~~DYR~~--------~~~~~--~----------------~y~~p-~~~~~~~~l~~~f 243 (404)
.+=+-|-.+|+.+- .+...||-.. .+..+ . ++|.| ++.++...+.+.+
T Consensus 510 ~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y 589 (764)
T KOG0480 510 NMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKY 589 (764)
T ss_pred CCCCHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 77804542222799993578667779999999987436211023256664999999999987537532489999999999
Q ss_pred HHHCCCCCCC----CCCEEEECCEEE-EECCCCCCCCCCCHHHHHHHHCCHHHHHHHHH-HCCEEEECCCCCCC------
Q ss_conf 9860444467----763276368089-96122021111019998521024689999985-37889981898787------
Q gi|254781047|r 244 AHITKGKKSL----SLNISTEGGYEI-HVPFFCSRVSRFSFFDLCDRPLSANDFVEIAN-RFDVVIINDIPLLK------ 311 (404)
Q Consensus 244 ~~l~~~~~~~----~~~i~v~~gR~i-~v~~~~~~va~f~F~eLC~~~lg~~DYi~Ia~-~f~ti~I~~VP~l~------ 311 (404)
..+....... +-.|.+ |.+ ...+.+...|+..-.+.-. +--++|-.+|-+ .+=-+-.+++-..+
T Consensus 590 ~~lR~~~~~~~~~~s~~ITv---RqLESlIRLsEA~Ar~~~~devt-~~~v~ea~eLlk~Siv~ve~ddi~~~d~~~~~~ 665 (764)
T KOG0480 590 KGLRQRDAQGNNRSSYRITV---RQLESLIRLSEARARVECRDEVT-KEDVEEAVELLKKSIVRVEGDDIELDDNDGEND 665 (764)
T ss_pred HHHHHHHCCCCCCCCCCCCH---HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCC
T ss_conf 99877410256766665069---99898999999998633242326-999999999987533140254114566655567
Q ss_pred ---CCCHHHHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf ---24638999899999998228982899807
Q gi|254781047|r 312 ---EDRKDWIKRFIMLIDVFYEHKIGLIISSE 340 (404)
Q Consensus 312 ---~~~~d~arRFI~LID~lYd~kv~Li~sa~ 340 (404)
.+..-.+.||+.=-|.--+....++.+-.
T Consensus 666 ~~g~s~~~~~k~~~~a~~~y~~~~~~~v~~~~ 697 (764)
T KOG0480 666 SGGESAQKPKKKFTSALDEYVRLSNGIVLSIR 697 (764)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCEEEEEE
T ss_conf 64323310466889999999987616268988
No 359
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=75.73 E-value=6.4 Score=19.55 Aligned_cols=19 Identities=16% Similarity=0.137 Sum_probs=14.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9988888772899999999
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFF 87 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy 87 (404)
+-+-|++|.|||.++--+-
T Consensus 22 ~vi~g~pg~GKS~~~~~~a 40 (186)
T pfam03796 22 IIIAARPSMGKTAFALNIA 40 (186)
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999679998799999999
No 360
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=75.59 E-value=6.5 Score=19.52 Aligned_cols=54 Identities=24% Similarity=0.316 Sum_probs=46.4
Q ss_pred HHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf 78999999613879998423-2047135888999999998549689981786867
Q gi|254781047|r 129 IPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPE 182 (404)
Q Consensus 129 l~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~ 182 (404)
.-.+|..++.+.++|.+||= ---|+..+.-+.+++..|-+.|.++|.+|-+..+
T Consensus 148 rv~ia~aL~~~p~lliLDEPts~LD~~~~~~l~~~l~~l~~~G~til~isH~l~~ 202 (501)
T PRK11288 148 MVEIAKALMRNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEE 202 (501)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCHHH
T ss_conf 9999999860998999658745689899999988999998727612651332899
No 361
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=75.28 E-value=3.2 Score=21.47 Aligned_cols=205 Identities=12% Similarity=0.193 Sum_probs=93.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC--------
Q ss_conf 499888887728999999998578111468889999999999999971311224665578078999999613--------
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALE-------- 139 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~-------- 139 (404)
-|-|=||-|.|||+|-.++-..+.++=- |.+.= .|.++- .. .+| .+=|-.+|...
T Consensus 154 NILLiGPTGSGKTLLAqTLA~~L~VPfA--------iADAT-tLTEAG----YV---GED-VENIL~~Llq~ad~DV~kA 216 (452)
T TIGR00382 154 NILLIGPTGSGKTLLAQTLARILNVPFA--------IADAT-TLTEAG----YV---GED-VENILLKLLQAADYDVEKA 216 (452)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCEE--------ECCHH-HHHCCC----CC---CCC-HHHHHHHHHHHCCCCHHHH
T ss_conf 6245468885268999999987388742--------11111-020066----42---422-8899999987414552452
Q ss_pred -CCEEEEEEEE-----------ECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEE
Q ss_conf -8799984232-----------0471358889999999985496899817868677523874056689899999850508
Q gi|254781047|r 140 -SRVLCFDEFM-----------ITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEI 207 (404)
Q Consensus 140 -~~lLCfDEF~-----------V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V 207 (404)
-=+++|||.- -.||.=--.=--||+ +.+ |.+ .|.||..==|++-|- |+ ++ +.-+|
T Consensus 217 ~kGIiYIDEIDKIaRkSEN~SITRDVSGEGVQQALLK-i~E-GTv----A~vPPqGGRKHP~~~--~i---qi--DTs~I 283 (452)
T TIGR00382 217 QKGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLK-IIE-GTV----ANVPPQGGRKHPQQE--FI---QI--DTSNI 283 (452)
T ss_pred CCCEEEEECCCCHHHHCCCCEEEEEECCCHHHHHHHH-HHH-CCE----EEECCCCCCCCCCCC--EE---EE--CCCCE
T ss_conf 7850898422310121577801122175549999998-760-323----431754488688657--68---86--47640
Q ss_pred EECCC--------CCHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCH
Q ss_conf 98047--------3112211236783022035302268999999986044446776327636808996122021111019
Q gi|254781047|r 208 ISLDS--------GQDYRRKEQSILPIYMTPLNSYNRVLMDKLWAHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSF 279 (404)
Q Consensus 208 ~~l~~--------~~DYR~~~~~~~~~y~~p~~~~~~~~l~~~f~~l~~~~~~~~~~i~v~~gR~i~v~~~~~~va~f~F 279 (404)
.=+-| -.+-|....++-++--.......+.....++..+....=..-.-|.-.=|| +|+..+-+.+--=..
T Consensus 284 LFICGGAF~GL~~iI~~R~~~~~~iGF~~~~~~~~~~~~~~~~L~~v~~~DL~kFGLIPEfIGR-LPV~a~L~~L~~eAL 362 (452)
T TIGR00382 284 LFICGGAFVGLEKIIKKRTEKKSSIGFGAEVKKKSKEKSEEELLRQVEPEDLVKFGLIPEFIGR-LPVIATLEKLDEEAL 362 (452)
T ss_pred EEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCC-CCCEECCCCCCHHHH
T ss_conf 0110543444899998874555333545521004578789999975171112210555101105-340202787887899
Q ss_pred HHHHHHHCCHHHHHHHHHHCCEEE-ECCCC
Q ss_conf 998521024689999985378899-81898
Q gi|254781047|r 280 FDLCDRPLSANDFVEIANRFDVVI-INDIP 308 (404)
Q Consensus 280 ~eLC~~~lg~~DYi~Ia~~f~ti~-I~~VP 308 (404)
=++-.+|. .+|.++|..+| +++|-
T Consensus 363 ~~IL~~Pk-----NAlvKQY~~lf~ld~Ve 387 (452)
T TIGR00382 363 IAILTKPK-----NALVKQYQALFKLDNVE 387 (452)
T ss_pred HHHHHCCC-----HHHHHHHHHHHCCCCCC
T ss_conf 99852544-----44889999971645611
No 362
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=75.02 E-value=6 Score=19.74 Aligned_cols=100 Identities=25% Similarity=0.270 Sum_probs=51.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCC--------------CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 666886499888887728999999998578--------------111468889999999999999971311224665578
Q gi|254781047|r 62 KYCSMQGIYLHGDVGQGKSMLMNLFFALVP--------------IEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESD 127 (404)
Q Consensus 62 ~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~--------------~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~d 127 (404)
..+||==+-+-|++|+|||-||..+..... -.+++|+-|-+--.++|+-+--+
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~Dl~~miDva------------- 131 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSDLHQMIDVA------------- 131 (1077)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEEEECHHHHHHHHHHH-------------
T ss_conf 5899758996369988746899999999877542036786478615635789886717888887688-------------
Q ss_pred HHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCC
Q ss_conf 078999999613879998423204713588899999999854968998178686775238
Q gi|254781047|r 128 PIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKD 187 (404)
Q Consensus 128 pl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~ 187 (404)
+|+ +.-||.+|- +-+=-|=--.++.-|..+|..-|+.--++- ||+++
T Consensus 132 -------KIa-DLVlLlIdg----nfGfEMETmEFLnil~~HGmPrvlgV~Thl-Dlfk~ 178 (1077)
T COG5192 132 -------KIA-DLVLLLIDG----NFGFEMETMEFLNILISHGMPRVLGVVTHL-DLFKN 178 (1077)
T ss_pred -------HHH-HEEEEEECC----CCCCEEHHHHHHHHHHHCCCCCEEEEEEEC-CCCCC
T ss_conf -------752-135788636----667042488999998664897247888621-13358
No 363
>PRK01172 ski2-like helicase; Provisional
Probab=74.88 E-value=6.7 Score=19.41 Aligned_cols=140 Identities=15% Similarity=0.215 Sum_probs=73.0
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 89999999974887789899999999999999986135433322566431024666666886499888887728999999
Q gi|254781047|r 6 VSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNL 85 (404)
Q Consensus 6 ~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdl 85 (404)
+...+.+..+.+++++.|-|..++..+. + -+.+-+--|-|.|||++-.+
T Consensus 8 ~~~~~~~~~~~~g~~l~p~Q~ea~~~~~-------~------------------------gkNllvsaPTgsGKTlvAe~ 56 (674)
T PRK01172 8 YDDEFLNLFTGNDFELYDHQRMAIEQLR-------K------------------------GENVIVSVPTAAGKTLIAYS 56 (674)
T ss_pred CCHHHHHHHHHCCCCCCHHHHHHHHHHH-------C------------------------CCCEEEECCCCCCHHHHHHH
T ss_conf 9979999999679988989999999997-------7------------------------99599978999869999999
Q ss_pred HHH-HCCCCHH----------HHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCCH-----------HHHHHHH------
Q ss_conf 998-5781114----------6888999999999999997131--12246655780-----------7899999------
Q gi|254781047|r 86 FFA-LVPIEKK----------CRLHFYEFMKDVHSRIIMYRKK--IEFGEILESDP-----------IPLVASS------ 135 (404)
Q Consensus 86 Fy~-~l~~~~K----------~R~HFh~FM~~ih~~l~~~~~~--~~~~~~~~~dp-----------l~~va~~------ 135 (404)
.-- .+...+| -+=-|.+| .++....-+ ...+. ...+| -...++.
T Consensus 57 ai~~~l~~~~k~iyi~P~kAL~~EK~~~~-----~~~~~~g~~v~~~tGd-~~~~~~~~~~~~I~V~T~Ek~~sl~~~~~ 130 (674)
T PRK01172 57 AIYETFLAGLKSIYIVPLRSLAMEKYEEL-----SRLRSLGMRVKISIGD-YDDPPDFIKRYDVVILTSEKADSLIHHDP 130 (674)
T ss_pred HHHHHHHHCCCEEEECCHHHHHHHHHHHH-----HHHHCCCCEEEEEECC-CCCCCCCCCCCCEEEECHHHHHHHHHCCC
T ss_conf 99999985897999877899999999999-----9887379827788538-88980102558999987899999986495
Q ss_pred -HHCCCCEEEEEEEEEC-CCHHHHHHHHHHHHH--HHCCCEEEEECCCCHH
Q ss_conf -9613879998423204-713588899999999--8549689981786867
Q gi|254781047|r 136 -IALESRVLCFDEFMIT-NIADAIILSRLFAAL--FSHGCIIVMTSNFIPE 182 (404)
Q Consensus 136 -l~~~~~lLCfDEF~V~-DiaDAmil~rl~~~l--f~~gv~lV~TSN~~P~ 182 (404)
..++..++-+||+|.- |-.=.-.+.-++..+ ...++-+|+-|=+-|+
T Consensus 131 ~~l~~v~~vViDEiH~i~d~~RG~~lE~~l~kl~~l~~~~qiIgLSATi~N 181 (674)
T PRK01172 131 YIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSN 181 (674)
T ss_pred HHHCCCCEEEEECCEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 022136989982652506877249999999999853866079971578689
No 364
>PRK01156 chromosome segregation protein; Provisional
Probab=74.87 E-value=2.6 Score=22.00 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 4689999985378899818987872463899989999999822
Q gi|254781047|r 288 SANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYE 330 (404)
Q Consensus 288 g~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd 330 (404)
|-++|+ +.....+|||.+-. .-..+...+++..|+.+..
T Consensus 817 aL~~~~--~~~~~~~ilDE~~~--~LD~~~~~~l~~~l~~~~~ 855 (895)
T PRK01156 817 AVAQFL--NNDKSLLIMDEPTA--FLDEDRRTNLKDIIEYSLK 855 (895)
T ss_pred HHHHHH--HCCCCEEEEECCCC--CCCHHHHHHHHHHHHHHHH
T ss_conf 999998--45899599859987--7587789999999999986
No 365
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=74.62 E-value=6.8 Score=19.37 Aligned_cols=21 Identities=43% Similarity=0.733 Sum_probs=18.1
Q ss_pred EECCCCCCHHHHHHHHHHHCC
Q ss_conf 888887728999999998578
Q gi|254781047|r 71 LHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 71 L~G~VG~GKT~LMdlFy~~l~ 91 (404)
|-|+=|.|||-||.+..-.++
T Consensus 30 llGpNGAGKSTll~~i~Gl~~ 50 (211)
T cd03264 30 LLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred EECCCCCHHHHHHHHHHCCCC
T ss_conf 999998239999999975966
No 366
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=74.57 E-value=6.9 Score=19.36 Aligned_cols=122 Identities=19% Similarity=0.181 Sum_probs=55.9
Q ss_pred CCEEE-EECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf 86499-88888772899999999857811146888999999999999997131122466557807899999961387999
Q gi|254781047|r 66 MQGIY-LHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC 144 (404)
Q Consensus 66 ~kGlY-L~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC 144 (404)
+.|+. +-|+.|.|||-.|..+.+.+....+ ++.=-+= -+...+....+. ........+.-..+..-|-.+-++|.
T Consensus 79 ~~GlilitGptGSGKtTtl~a~l~~~~~~~~-~i~tiEd--PvE~~~~~~~Q~-~v~~~~g~~~~~~lr~~LR~dPDvi~ 154 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELNTPEK-NIITVED--PVEYQIPGINQV-QVNEKAGLTFARGLRAILRQDPDIIM 154 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCC-EEEEEEC--CCCCCCCCCCEE-EECCCCCCCHHHHHHHHHCCCCCEEE
T ss_conf 9988999789999779999999986436885-0899867--631456887357-61666687899999998556999887
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHCCCEEEEE--CCCCHHH---HHCCCCCHHHHHHH
Q ss_conf 84232047135888999999998549689981--7868677---52387405668989
Q gi|254781047|r 145 FDEFMITNIADAIILSRLFAALFSHGCIIVMT--SNFIPEN---LYKDEINRNVLVSF 197 (404)
Q Consensus 145 fDEF~V~DiaDAmil~rl~~~lf~~gv~lV~T--SN~~P~d---LY~~GLqR~~FlPf 197 (404)
++|. .|-..|.+. +++. ..|-.+++| .|-+++- |-.=|+.+...-..
T Consensus 155 igEi--RD~eta~~a---~~aa-~tGhlV~tTlHa~~a~~~i~RL~~lgv~~~~l~~~ 206 (264)
T cd01129 155 VGEI--RDAETAEIA---VQAA-LTGHLVLSTLHTNDAPGAITRLLDMGIESYLLSSA 206 (264)
T ss_pred ECCC--CCHHHHHHH---HHHH-HHCCEEEEEECCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf 4688--999999999---9999-70996999970399999999999829998999999
No 367
>pfam03237 Terminase_6 Terminase-like family. This family represents a group of terminase proteins.
Probab=74.56 E-value=6.1 Score=19.70 Aligned_cols=112 Identities=14% Similarity=0.115 Sum_probs=50.5
Q ss_pred EECCCCCCHHHHHHHH--HHHCCCCHH-----------HHHHHHHHHHHHHHHHHHHHCCCCCCC-----CCCC---CHH
Q ss_conf 8888877289999999--985781114-----------688899999999999999713112246-----6557---807
Q gi|254781047|r 71 LHGDVGQGKSMLMNLF--FALVPIEKK-----------CRLHFYEFMKDVHSRIIMYRKKIEFGE-----ILES---DPI 129 (404)
Q Consensus 71 L~G~VG~GKT~LMdlF--y~~l~~~~K-----------~R~HFh~FM~~ih~~l~~~~~~~~~~~-----~~~~---dpl 129 (404)
+.|+.|.|||+++-.. +.++..+.+ .|.=|...+.++...+....-...... .+.. -+.
T Consensus 2 ~~ggr~~GKT~~~~~~~~~~a~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nGs~i~~~~~ 81 (380)
T pfam03237 2 ILGSRQSGKTFAFAREALRHALGNGPKNQIILSASKAQARLEFKKGIIEIAGDLLEITFEEKNGNPIILPNGAKLYFLGL 81 (380)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEECCCCEEEEEEC
T ss_conf 42645252839999999999985899728999799999999999999996688638716727887399159988999625
Q ss_pred H--HHHHHHH-CCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 8--9999996-13879998423-20471358889999999985496899817868677
Q gi|254781047|r 130 P--LVASSIA-LESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPEN 183 (404)
Q Consensus 130 ~--~va~~l~-~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~d 183 (404)
. .-++.+- .+...+.+||+ ++.+-+--..+.++.... ..+..+++|..-.|..
T Consensus 82 ~~~~~~~~~rG~~~~~i~~DE~a~~~~~~~~~~~~~~~~~~-~~~~~~~~stp~~~~~ 138 (380)
T pfam03237 82 ESETTAQGYRGASIAGIYFDEATWLPKFQESELVRRLRATK-GKWRKTFFSTPPSPGH 138 (380)
T ss_pred CCCCCHHHCCCCCCCEEEEEEHHHCCCHHHHHHHHHHHCCC-CCCCEEEEECCCCCCC
T ss_conf 77664310348545549983045366278999986441047-9975799988989985
No 368
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=74.48 E-value=6.9 Score=19.34 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 499888887728999999998578
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
=+-|-|+-|+|||-|+.+..-.++
T Consensus 29 i~~iiG~nGaGKSTLlk~i~Gl~~ 52 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999988999989999999964677
No 369
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=74.36 E-value=3.2 Score=21.47 Aligned_cols=148 Identities=20% Similarity=0.258 Sum_probs=75.5
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEE-CCCCCCH
Q ss_conf 970058999999997488778989999999999999998613543332256643102466666688649988-8887728
Q gi|254781047|r 1 MSLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLH-GDVGQGK 79 (404)
Q Consensus 1 m~~~~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~-G~VG~GK 79 (404)
||++.+...|+-. .+..=-.|..++..|.. .|... ..---||+ |.-|+||
T Consensus 1 msy~vlark~RP~----~f~e~vGQ~~v~~~L~n---al~~~----------------------rl~haylf~G~rGvGK 51 (717)
T PRK08853 1 MSYLALARKWRPT----QFKEVVGQSHVLTALEN---ALAHN----------------------RLHHAYLFSGTRGVGK 51 (717)
T ss_pred CCCHHHHHHHCCC----CHHHHCCCHHHHHHHHH---HHHCC----------------------CCCCEEEEECCCCCCH
T ss_conf 9417777651798----56551385999999999---99709----------------------9740576108898889
Q ss_pred HHHHHHHHHHCCCCHH--------H----H---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH-----HHCC
Q ss_conf 9999999985781114--------6----8---88999999999999997131122466557807899999-----9613
Q gi|254781047|r 80 SMLMNLFFALVPIEKK--------C----R---LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASS-----IALE 139 (404)
Q Consensus 80 T~LMdlFy~~l~~~~K--------~----R---~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~-----l~~~ 139 (404)
|.+--+|-.++.+..- . - -+|-+++ ++-...+ .+.+| +..+-.. ....
T Consensus 52 Tt~ARi~Ak~lNC~~~~~~~pcg~C~~C~~i~~g~~~d~~-----EiDaAs~------~~vdd-~rel~~~~~y~p~~~~ 119 (717)
T PRK08853 52 TTIGRLFAKGLNCETGITSTPCGQCATCKEIDEGRFVDLL-----EIDAASR------TKVED-TRELLDNVQYKPARGR 119 (717)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCEE-----EECCCCC------CCHHH-HHHHHHHCCCCCCCCC
T ss_conf 8999999998678999999978887026767447877524-----5405656------78899-9999985554887785
Q ss_pred CCEEEEEEEEECCCHHHHHHHHHHHHHH-------HCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf 8799984232047135888999999998-------54968998178686775238740566898999998505089804
Q gi|254781047|r 140 SRVLCFDEFMITNIADAIILSRLFAALF-------SHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD 211 (404)
Q Consensus 140 ~~lLCfDEF~V~DiaDAmil~rl~~~lf-------~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~ 211 (404)
++|..+||.| |+=+.-|.+|. .+-++|.+|-. |..+ -..|-.+|.-+++.
T Consensus 120 yKvyiiDEvH-------mls~~afnAlLKtlEEPP~hv~FilaTT~--~~ki-------------p~TilSRc~~f~l~ 176 (717)
T PRK08853 120 FKVYLIDEVH-------MLSRHSFNALLKTLEEPPEYVKFLLATTD--PQKL-------------PVTILSRCLQFHLK 176 (717)
T ss_pred EEEEEEECHH-------HCCHHHHHHHHHHHCCCCCCEEEEEECCC--HHHC-------------CHHHHHHHHHCCCC
T ss_conf 4799983054-------43899999998760378756489984387--3437-------------38898765442326
No 370
>pfam05272 VirE Virulence-associated protein E. This family contains several bacterial virulence-associated protein E like proteins.
Probab=74.32 E-value=3.2 Score=21.49 Aligned_cols=123 Identities=20% Similarity=0.285 Sum_probs=72.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf 49988888772899999999857811146888999999999999997131122466557807899999961387999842
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDE 147 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDE 147 (404)
-+=|.|+=|.|||-. +..+- + +|..+ .+. ....+|.+. ......++++||
T Consensus 54 vlvL~G~QG~gKStf----~~~L~-~--------~~~~d---~~~---------~~~~kD~~~-----~l~~~wi~el~E 103 (198)
T pfam05272 54 VLILQGAQGSGKSTF----LKKLG-G--------EWFTD---SIR---------SFEGKDAYE-----KLQGVWIVEIAE 103 (198)
T ss_pred EEEEECCCCCCHHHH----HHHHH-H--------HHCCC---CCC---------CCCCCHHHH-----HHHHHHHHHHHH
T ss_conf 789988986789999----99973-7--------75156---555---------767738999-----999878732598
Q ss_pred EEECCCHHHHHHHHHHHHH--------------HHCCCEEEEECCCCHHHHHCCCC-CHHHHHHHHHHHHHCCEEEECCC
Q ss_conf 3204713588899999999--------------85496899817868677523874-05668989999985050898047
Q gi|254781047|r 148 FMITNIADAIILSRLFAAL--------------FSHGCIIVMTSNFIPENLYKDEI-NRNVLVSFIELLEKKLEIISLDS 212 (404)
Q Consensus 148 F~V~DiaDAmil~rl~~~l--------------f~~gv~lV~TSN~~P~dLY~~GL-qR~~FlPfI~~lk~~~~V~~l~~ 212 (404)
|.-..-+|.--++.++..- +.+..++|+|+|... ..+|.= +| ++-++++..
T Consensus 104 l~~~~k~~~~~lK~fls~~~d~~R~pY~~~~~~~pR~~vfigTtN~~~--~L~D~TGnR------------RF~pi~v~~ 169 (198)
T pfam05272 104 LDGFSKAEVEAIKAFITRTVDSFRAPYGRRAESFPRQCVFVGTTNRDE--FLKDPTGNR------------RFWPVKVGK 169 (198)
T ss_pred HHHCCHHHHHHHHHHHCCHHHCCHHCCCCCCEECCEEEEEEEECCCCC--CCCCCCCCE------------EEEEEEECC
T ss_conf 751365329999998454131231022356400654799999638876--557999981------------689999688
Q ss_pred CCHHHHCCCCCCCEEEECCCHHHHHHHHHHHHH
Q ss_conf 311221123678302203530226899999998
Q gi|254781047|r 213 GQDYRRKEQSILPIYMTPLNSYNRVLMDKLWAH 245 (404)
Q Consensus 213 ~~DYR~~~~~~~~~y~~p~~~~~~~~l~~~f~~ 245 (404)
..|-.... .+..++..+++|.+
T Consensus 170 ~~~~~~~~-----------~d~l~~~rdqlWAe 191 (198)
T pfam05272 170 KINIKHPV-----------SELLDEVRDQLWAE 191 (198)
T ss_pred CCCCCCCC-----------HHHHHHHHHHHHHH
T ss_conf 54557675-----------57779999999999
No 371
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=74.29 E-value=7 Score=19.32 Aligned_cols=68 Identities=18% Similarity=0.233 Sum_probs=48.9
Q ss_pred HHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHC-CCEEEEECCC-----------------------CHHHH
Q ss_conf 8999999613879998423-204713588899999999854-9689981786-----------------------86775
Q gi|254781047|r 130 PLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSH-GCIIVMTSNF-----------------------IPENL 184 (404)
Q Consensus 130 ~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~-gv~lV~TSN~-----------------------~P~dL 184 (404)
-.+|..|+.+-+||++||= ---|+.-..-+..++..|.+. |+++|..+-- .|+++
T Consensus 145 VaiARAL~~~P~vLLLDEPts~LD~~~r~~i~~~l~~L~~e~g~T~i~VTHD~~eA~~laDrI~Vm~~G~I~q~GtP~ev 224 (352)
T PRK10851 145 VALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224 (352)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCEEEEEECCEEEEEECHHHH
T ss_conf 99999986599999990887668989999999999999997399899998899999986989999989999999388999
Q ss_pred HCCCCCH--HHHHHH
Q ss_conf 2387405--668989
Q gi|254781047|r 185 YKDEINR--NVLVSF 197 (404)
Q Consensus 185 Y~~GLqR--~~FlPf 197 (404)
|.++-++ ..|+-.
T Consensus 225 y~~P~~~~vA~f~G~ 239 (352)
T PRK10851 225 WREPATRFVLEFMGE 239 (352)
T ss_pred HHCCCCHHHHHHCCC
T ss_conf 878998389873783
No 372
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=73.97 E-value=1.7 Score=23.15 Aligned_cols=21 Identities=29% Similarity=0.475 Sum_probs=16.6
Q ss_pred EEECCCCCCHHHHHHHHHHHC
Q ss_conf 988888772899999999857
Q gi|254781047|r 70 YLHGDVGQGKSMLMNLFFALV 90 (404)
Q Consensus 70 YL~G~VG~GKT~LMdlFy~~l 90 (404)
=|-|++|.|||-|++.+-..+
T Consensus 3 GitG~pGaGKStLi~~l~~~~ 23 (148)
T cd03114 3 GITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred EECCCCCCCHHHHHHHHHHHH
T ss_conf 625899787899999999999
No 373
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D; InterPro: IPR011776 This entry represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (IPR011775 from INTERPRO), this subunit is not found in archaea.; GO: 0005524 ATP binding, 0016851 magnesium chelatase activity, 0015995 chlorophyll biosynthetic process.
Probab=73.87 E-value=3.2 Score=21.48 Aligned_cols=105 Identities=22% Similarity=0.358 Sum_probs=65.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHH---------HHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCHHH----
Q ss_conf 86499888887728999999998578111468---------8899999999999999713112246--65578078----
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCR---------LHFYEFMKDVHSRIIMYRKKIEFGE--ILESDPIP---- 130 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R---------~HFh~FM~~ih~~l~~~~~~~~~~~--~~~~dpl~---- 130 (404)
..||-|-|.+|+|||-|.+.|-+.||.....- --=|+|--+...|+.+..+-..+.- ...+-|+-
T Consensus 17 lgGv~I~~r~Gtgk~al~ral~~~Lp~~~~~~g~~i~~~~PA~P~~W~~~~~ER~~~~~GlsD~~~~~~~~~~p~~~lP~ 96 (705)
T TIGR02031 17 LGGVAIRARAGTGKTALARALAEILPPIEELEGSIISNADPAEPDEWEDDLDERIEEEAGLSDSEVKVVIVKAPFVELPL 96 (705)
T ss_pred HCCEEEECCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEECCC
T ss_conf 05455416777388999999998588874326620147888887323445654233204776662204650564102589
Q ss_pred ----------------------HHHHHHHCCCC--EEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf ----------------------99999961387--999842320471358889999999985496899
Q gi|254781047|r 131 ----------------------LVASSIALESR--VLCFDEFMITNIADAIILSRLFAALFSHGCIIV 174 (404)
Q Consensus 131 ----------------------~va~~l~~~~~--lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV 174 (404)
.+=..|..+.. ||.+|+... -|.-+..+|++.| +.|.++|
T Consensus 97 ~vtedrL~G~iDve~sl~~G~~V~~~GlL~~A~~gvlyvd~~~l---ld~~~~n~l~~AL-~~G~~~v 160 (705)
T TIGR02031 97 GVTEDRLLGGIDVEESLASGQRVLQPGLLDEANRGVLYVDSLNL---LDDSLVNRLLDAL-DEGVVIV 160 (705)
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCHHHCCCCCEECCCHHH---HHHHHHHHHHHHH-HCCCEEE
T ss_conf 87320302640020146878254407603116897043154541---1068999999886-5497688
No 374
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=73.68 E-value=7.2 Score=19.22 Aligned_cols=115 Identities=18% Similarity=0.239 Sum_probs=66.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH----------H-------HHHH--HHH----HHHHHHC-CCCCCC
Q ss_conf 64998888877289999999985781114688899----------9-------9999--999----9999713-112246
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY----------E-------FMKD--VHS----RIIMYRK-KIEFGE 122 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh----------~-------FM~~--ih~----~l~~~~~-~~~~~~ 122 (404)
.=+=|-|+-|.|||-||.+..-..+... -++.|+ + |+-+ ... .+.-..+ .....-
T Consensus 27 Ei~~liG~nGaGKSTll~~l~G~~~p~~-G~I~~~G~~~~~~~~~~~~~~~i~~vp~~r~~~~l~~~~~v~en~~~~~~L 105 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLRPPAS-GEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSLL 105 (182)
T ss_pred CEEEEECCCCCCCCHHHHHHCCCCCCCC-CEEEECCEECCCCCHHHHHHCCEEEEEHHHHHCCCCCCCCHHHHHHCCCCC
T ss_conf 6999988899992637787669867887-759999999886499999978969960207662567899099995185579
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf 65578078999999613879998423-2047135888999999998549689981786867
Q gi|254781047|r 123 ILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPE 182 (404)
Q Consensus 123 ~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~ 182 (404)
++..----.+|..++.+.+||.+||= -=-|+.....+-+++..+-++|..+|.+|...++
T Consensus 106 SGG~~Qrv~lAral~~~p~llllDEPT~gLD~~~~~~i~~~i~~l~~~g~tvi~isHdl~~ 166 (182)
T cd03215 106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDE 166 (182)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 9899999999999971999999868754589999999999999999789999999687999
No 375
>KOG0057 consensus
Probab=73.64 E-value=7.2 Score=19.22 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=9.7
Q ss_pred EECCCCCCHHHHHHHHHHHCC
Q ss_conf 888887728999999998578
Q gi|254781047|r 71 LHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 71 L~G~VG~GKT~LMdlFy~~l~ 91 (404)
.-|-.+.|--.+++.|.-.+.
T Consensus 285 ~~~~mtvgdlv~~n~l~~qL~ 305 (591)
T KOG0057 285 AAGKMTVGDLVMVNSLLFQLS 305 (591)
T ss_pred HHCCCCCCCHHHHHHHHHHHH
T ss_conf 420565240156899999997
No 376
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=73.60 E-value=2.5 Score=22.17 Aligned_cols=20 Identities=40% Similarity=0.605 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99888887728999999998
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFA 88 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~ 88 (404)
+=|.|++|.|||.+.+.|-+
T Consensus 2 igiTG~igSGKStv~~~l~~ 21 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 88637875789999999998
No 377
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=73.51 E-value=3.1 Score=21.54 Aligned_cols=16 Identities=31% Similarity=0.715 Sum_probs=7.1
Q ss_pred EECCCCCCHHHHHHHH
Q ss_conf 8888877289999999
Q gi|254781047|r 71 LHGDVGQGKSMLMNLF 86 (404)
Q Consensus 71 L~G~VG~GKT~LMdlF 86 (404)
|+|+.|.|||.|+|..
T Consensus 35 I~G~TGAGKSTIlDAI 50 (1047)
T PRK10246 35 ITGPTGAGKTTLLDAI 50 (1047)
T ss_pred EECCCCCCHHHHHHHH
T ss_conf 8899999889999999
No 378
>PRK10536 hypothetical protein; Provisional
Probab=73.29 E-value=2.5 Score=22.19 Aligned_cols=134 Identities=16% Similarity=0.251 Sum_probs=71.3
Q ss_pred CEEEEECCCCCCHHHHHHHHH-HHCCCC---------------HH-------HHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 649988888772899999999-857811---------------14-------6888999999999999997131122466
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFF-ALVPIE---------------KK-------CRLHFYEFMKDVHSRIIMYRKKIEFGEI 123 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy-~~l~~~---------------~K-------~R~HFh~FM~~ih~~l~~~~~~~~~~~~ 123 (404)
.=+...|+.|+|||+|--..- +.+..+ ++ ..--+.-||.-+.+-|++.-+.......
T Consensus 75 ~ivf~~GpAGTGKT~lA~a~Al~~l~~~~~~kIIltRP~V~~ge~lGfLPGdl~EK~~Pyl~Pi~D~L~~~lg~~~~~~~ 154 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGASFMQYC 154 (262)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 83999899987589999999999998588868999667875676667698987998878887899999999685999999
Q ss_pred -------CCCCHHHHHHHHHHCCCCEEEEEEEEECCCHHH-HHHHHHHHHHHHCCCEEEEECCCCHHHHH---CCCCCHH
Q ss_conf -------557807899999961387999842320471358-88999999998549689981786867752---3874056
Q gi|254781047|r 124 -------LESDPIPLVASSIALESRVLCFDEFMITNIADA-IILSRLFAALFSHGCIIVMTSNFIPENLY---KDEINRN 192 (404)
Q Consensus 124 -------~~~dpl~~va~~l~~~~~lLCfDEF~V~DiaDA-mil~rl~~~lf~~gv~lV~TSN~~P~dLY---~~GLqR~ 192 (404)
..--|+..+=-.-. +-.++-+||.|=..+... |+|.| +..|..+|.|-...-.||- +|||.
T Consensus 155 ~~~e~G~Iei~PlafmRGrTf-~na~IIvDEaQN~T~~qmk~iLTR-----iG~~SKiVi~GD~~Q~Dl~~~~~SGL~-- 226 (262)
T PRK10536 155 LRPEIGKVEIAPFAYMRGRTF-ENAVVILDEAQNVTAAQMKMFLTR-----LGENVTVIVNGDITQCDLPRGVKSGLS-- 226 (262)
T ss_pred HHHHCCCEEEEEHHHHCCCCC-CCEEEEEEHHHCCCHHHHHHHHHH-----CCCCCEEEEECCCCCCCCCCCCCCCHH--
T ss_conf 873059489987587447751-442899841212899999889854-----259968999688202269999987399--
Q ss_pred HHHHHHHHHHHC--CEEEECC
Q ss_conf 689899999850--5089804
Q gi|254781047|r 193 VLVSFIELLEKK--LEIISLD 211 (404)
Q Consensus 193 ~FlPfI~~lk~~--~~V~~l~ 211 (404)
.+++.++.. +.+++++
T Consensus 227 ---~~~~~l~~~~~i~~i~F~ 244 (262)
T PRK10536 227 ---DALERFEEDEMVGIVRFG 244 (262)
T ss_pred ---HHHHHHCCCCCEEEEECC
T ss_conf ---999995699965899836
No 379
>pfam05970 DUF889 PIF1 helicase. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated.
Probab=73.21 E-value=2.1 Score=22.58 Aligned_cols=95 Identities=18% Similarity=0.146 Sum_probs=47.3
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHH------------HHHH----HHHHHHHHHHHHHHHHCCCCCCCCCCCC-HHHHHHHH
Q ss_conf 88877289999999985781114------------6888----9999999999999971311224665578-07899999
Q gi|254781047|r 73 GDVGQGKSMLMNLFFALVPIEKK------------CRLH----FYEFMKDVHSRIIMYRKKIEFGEILESD-PIPLVASS 135 (404)
Q Consensus 73 G~VG~GKT~LMdlFy~~l~~~~K------------~R~H----Fh~FM~~ih~~l~~~~~~~~~~~~~~~d-pl~~va~~ 135 (404)
|+-|+|||+|...+.+.+....| ..+| .|.|.. +.-. ..+....+ ....-..+
T Consensus 1 G~AGTGKS~ll~~i~~~l~~~~~~v~vtA~TGiAA~~i~gG~TiHs~~g--------i~~~--~~~~~~~~~~~~~~~~~ 70 (418)
T pfam05970 1 GYGGTGKTFLWNALSARIRSRGKIVLNVASSGIAALLLPGGRTAHSRFG--------IPLD--IDEDSTCKIKRGSKLAE 70 (418)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCEEHHHCCC--------CCCC--CCCCCCEEECCCHHHHH
T ss_conf 9798879999999999997689889998968999851699873985269--------8988--77420112133778899
Q ss_pred HHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHC-------CCEEEEEC
Q ss_conf 9613879998423204713588899999999854-------96899817
Q gi|254781047|r 136 IALESRVLCFDEFMITNIADAIILSRLFAALFSH-------GCIIVMTS 177 (404)
Q Consensus 136 l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~-------gv~lV~TS 177 (404)
...++++|-+||.---+..=-..|.+.++.+... |+-+|++-
T Consensus 71 ~~~~~~vLIIDEiSMv~~~lfd~id~~lr~i~~~~~~~PFGGiqvIl~G 119 (418)
T pfam05970 71 LLKKASLIIWDEAPMTHRHCFEALDRTLRDILKNTDDKPFGGKTVVLGG 119 (418)
T ss_pred HHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC
T ss_conf 8740879998541135789999999999998712787677974799824
No 380
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=72.89 E-value=4.2 Score=20.68 Aligned_cols=35 Identities=26% Similarity=0.491 Sum_probs=23.0
Q ss_pred HHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 256643102466666688649988888772899999999
Q gi|254781047|r 49 IFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLFF 87 (404)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlFy 87 (404)
+|+|+|+....++. - =|-+-|..|.|||-|+.-+-
T Consensus 2 ~~~~~~~~~~~~k~---~-KililG~~~sGKTsil~~l~ 36 (174)
T cd04153 2 LFSSLWSLFFPRKE---Y-KVIIVGLDNAGKTTILYQFL 36 (174)
T ss_pred CHHHHHHHHCCCCE---E-EEEEECCCCCCHHHHHHHHH
T ss_conf 35899987658977---9-99999899998899999997
No 381
>KOG0478 consensus
Probab=72.86 E-value=7.5 Score=19.10 Aligned_cols=122 Identities=19% Similarity=0.232 Sum_probs=63.2
Q ss_pred CCCCHHHHHHHCCCCCCCCC----CCCEEEEECCCCCCHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 33322566431024666666----88649988888772899999999857811----14688899999999999999713
Q gi|254781047|r 45 QEQGIFSWLWNLRGIKRKYC----SMQGIYLHGDVGQGKSMLMNLFFALVPIE----KKCRLHFYEFMKDVHSRIIMYRK 116 (404)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~----~~kGlYL~G~VG~GKT~LMdlFy~~l~~~----~K~R~HFh~FM~~ih~~l~~~~~ 116 (404)
.+++++-.+|+..++..... .-=-|.|-|++|+|||-|+...+..+|-. .|.-- ..-|..
T Consensus 437 vKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsS---------avGLTa--- 504 (804)
T KOG0478 437 VKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSS---------AVGLTA--- 504 (804)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCC---------HHCCEE---
T ss_conf 66667788756876322334442455228994699867899999999747754040587630---------220035---
Q ss_pred CCCCCCCCCCCH-----HHHHHHHHHCCCCEEEEEEEEEC-CCHHHHHHHHHHHH--HHHCCCEEEEECCCCHHHHH
Q ss_conf 112246655780-----78999999613879998423204-71358889999999--98549689981786867752
Q gi|254781047|r 117 KIEFGEILESDP-----IPLVASSIALESRVLCFDEFMIT-NIADAIILSRLFAA--LFSHGCIIVMTSNFIPENLY 185 (404)
Q Consensus 117 ~~~~~~~~~~dp-----l~~va~~l~~~~~lLCfDEF~V~-DiaDAmil~rl~~~--lf~~gv~lV~TSN~~P~dLY 185 (404)
...+|| +..-..-++++.-+.|+|||-=- |-+-+++. ..++. +---..-+|+|=|.-+.=|-
T Consensus 505 ------yVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLh-EvMEQQTvSIAKAGII~sLNAR~SVLA 574 (804)
T KOG0478 505 ------YVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLH-EVMEQQTLSIAKAGIIASLNARCSVLA 574 (804)
T ss_pred ------EEEECCCCCEEEEECCCEEECCCCEEECHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCEEEECCCCCEEEE
T ss_conf ------6776576554665048489728965771123333277889999-999876311743022342166530344
No 382
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=72.80 E-value=4 Score=20.86 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 886499888887728999999998578
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
.--.+-|+|+-|.|||-||.++|....
T Consensus 36 aGECvvL~G~SG~GKStllr~LYaNY~ 62 (235)
T COG4778 36 AGECVVLHGPSGSGKSTLLRSLYANYL 62 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 750799668988768899999985147
No 383
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=72.78 E-value=7.6 Score=19.09 Aligned_cols=69 Identities=12% Similarity=0.179 Sum_probs=40.9
Q ss_pred CHHHHHHHHC----CHHHHHHHHH------HCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHC
Q ss_conf 1999852102----4689999985------37889981898787246389998999999982289828998078978801
Q gi|254781047|r 278 SFFDLCDRPL----SANDFVEIAN------RFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLF 347 (404)
Q Consensus 278 ~F~eLC~~~l----g~~DYi~Ia~------~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~ 347 (404)
++.++-+-|+ .+.|.-.... .++.|+|+-.=+ +..+......+..+.+......+-|++||.....++.
T Consensus 290 TYAeIMgVPV~VV~dp~eL~~AL~~lkdka~~DLILIDTAGR-S~RD~~~I~EL~~~l~~~~p~ev~LVLSATTK~~DL~ 368 (436)
T PRK11889 290 DYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGK-NYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMI 368 (436)
T ss_pred HHHHHHCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHH
T ss_conf 999984994399688899999999876336888899929898-8468999999999985127771699997889989999
No 384
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=72.65 E-value=7.6 Score=19.07 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 4998888877289999999985781
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
=+=|-|+-|+|||-|+.+....++.
T Consensus 35 ~vaivG~nGsGKSTL~k~l~Gl~~p 59 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLLLP 59 (279)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9999999996599999999728888
No 385
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=72.34 E-value=7.7 Score=19.02 Aligned_cols=133 Identities=16% Similarity=0.141 Sum_probs=70.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHH--------HHHHHHHHHHHHHHHHHHHC---------------------
Q ss_conf 8649988888772899999999857811146--------88899999999999999713---------------------
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKC--------RLHFYEFMKDVHSRIIMYRK--------------------- 116 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~--------R~HFh~FM~~ih~~l~~~~~--------------------- 116 (404)
|-.+-++|+-|.||..+--.|-..+-+.... =---|-|+..-|-.++...-
T Consensus 21 ~HA~Lf~Gp~G~Gk~~lA~~~A~~llC~~~~~~~~~Cg~C~sC~~~~~~~HPD~~~i~Pe~~~~~~~~~~~~~~~~~~~~ 100 (342)
T PRK06964 21 PHALLLHGQAGIGKLAFAQHLAQGLLCETPQPNGEPCGTCAACTWFAQGNHPDYRIVRPEALAAEAPGAADDAKAADADE 100 (342)
T ss_pred HEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCHHCCCCCCCCCHHHHHHHHH
T ss_conf 30576579998679999999999983899998889786777788886279997455340021022333210010111222
Q ss_pred --CCC--CCCCCCCCHHHHHHHHHH-----CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCC
Q ss_conf --112--246655780789999996-----13879998423204713588899999999854968998178686775238
Q gi|254781047|r 117 --KIE--FGEILESDPIPLVASSIA-----LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKD 187 (404)
Q Consensus 117 --~~~--~~~~~~~dpl~~va~~l~-----~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~ 187 (404)
+.. ......-|-+..+.+.+. +.++|.-+|..+--+.+-|==|=+.++.==. ++++|.+|+.+
T Consensus 101 ~~~~~~~~~~~I~idqiR~l~~~l~~~~~~g~~kVviI~~Ae~mn~~aaNalLK~LEEPp~-~~~~iL~~~~~------- 172 (342)
T PRK06964 101 GGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYPAEALNVAAANALLKTLEEPPP-GVVFLLVSARI------- 172 (342)
T ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCC-CEEEEEEECCH-------
T ss_conf 1012356556454999999999970075458844999827787389999999997237987-84899986992-------
Q ss_pred CCCHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 74056689899999850508980473
Q gi|254781047|r 188 EINRNVLVSFIELLEKKLEIISLDSG 213 (404)
Q Consensus 188 GLqR~~FlPfI~~lk~~~~V~~l~~~ 213 (404)
++.+| .|..+|..+.+...
T Consensus 173 ----~~llp---TI~SRcq~~~~~~~ 191 (342)
T PRK06964 173 ----DRLLP---TILSRCRQWPMTVP 191 (342)
T ss_pred ----HHCCH---HHHHCCEEECCCCC
T ss_conf ----54836---88767643028995
No 386
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=72.30 E-value=7.8 Score=19.02 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 64998888877289999999985781
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
.=+-|=|+=|.|||-||.+..-.++.
T Consensus 26 e~~~liGpNGaGKSTllk~i~Gl~~p 51 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGLLKP 51 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 89999999998699999999768788
No 387
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional
Probab=72.29 E-value=7.8 Score=19.01 Aligned_cols=54 Identities=20% Similarity=0.285 Sum_probs=46.8
Q ss_pred HHHHHHHHHCCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf 789999996138799984232-047135888999999998549689981786867
Q gi|254781047|r 129 IPLVASSIALESRVLCFDEFM-ITNIADAIILSRLFAALFSHGCIIVMTSNFIPE 182 (404)
Q Consensus 129 l~~va~~l~~~~~lLCfDEF~-V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~ 182 (404)
-..+|..++.+-+||++||-- =-|+...-.+-.++..+-++|.+++.||-...+
T Consensus 144 rl~ia~al~~~P~lliLDEPT~GLDp~~r~~i~~~i~~l~~~G~TillttH~l~E 198 (304)
T PRK13537 144 RLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEE 198 (304)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
T ss_conf 9999999837999999938866789999999999999999689999998884899
No 388
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=72.27 E-value=3.2 Score=21.44 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=24.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 6688649988888772899999999857811
Q gi|254781047|r 63 YCSMQGIYLHGDVGQGKSMLMNLFFALVPIE 93 (404)
Q Consensus 63 ~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~ 93 (404)
....+.+-++|.+|+|||-+|.-+...+-..
T Consensus 182 ~sE~qH~li~GTtGtGKS~~ir~LL~qIR~R 212 (732)
T PRK13700 182 DSEIQNFCLHGTVGAGKSEVIRRLANYARQR 212 (732)
T ss_pred CCHHHEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 5203126774688888999999999999972
No 389
>PRK13542 consensus
Probab=72.02 E-value=7.9 Score=18.97 Aligned_cols=25 Identities=28% Similarity=0.491 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 4998888877289999999985781
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
=+-|-|+-|.|||-||.+..-.++.
T Consensus 46 i~~liGpNGaGKTTLlk~l~Gll~p 70 (224)
T PRK13542 46 LLQVMGPNGSGKTSLLRVLSGLMPP 70 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9999999999999999999579788
No 390
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=72.00 E-value=4.6 Score=20.46 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=23.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 8649988888772899999999857811
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIE 93 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~ 93 (404)
.-.+.|-|+-|+|||+|-..+-..+.++
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVP 124 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVP 124 (408)
T ss_pred ECCEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 0317998889975779999999984898
No 391
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=71.98 E-value=3.3 Score=21.41 Aligned_cols=82 Identities=16% Similarity=0.220 Sum_probs=39.7
Q ss_pred CEE-EEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf 649-98888877289999999985781114688899-9999999999997131122466557807899999961387999
Q gi|254781047|r 67 QGI-YLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY-EFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC 144 (404)
Q Consensus 67 kGl-YL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh-~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC 144 (404)
||+ .+-|+.|.|||-.|..+.+.++...++++--- +--..+|..-...-.+...+ ....+--..+...|-.+-++|+
T Consensus 1 ~GliLitG~TGSGKTTtl~all~~i~~~~~~~IiTiEDPiE~~~~~~~~~i~q~e~g-~~~~sf~~~lr~aLR~~PDvI~ 79 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVG-LDTLSFENALKAALRQDPDVIL 79 (198)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCCCEEEEECCCC-CCCCCHHHHHHHHHHHCCCEEE
T ss_conf 938999899999799999999985363788369996473775236764488733307-8863799999999854888575
Q ss_pred EEEEE
Q ss_conf 84232
Q gi|254781047|r 145 FDEFM 149 (404)
Q Consensus 145 fDEF~ 149 (404)
+.|.-
T Consensus 80 vGEiR 84 (198)
T cd01131 80 VGEMR 84 (198)
T ss_pred CCCCC
T ss_conf 27778
No 392
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=71.94 E-value=7.9 Score=18.96 Aligned_cols=135 Identities=16% Similarity=0.166 Sum_probs=77.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHHHHHHHCCCCC----------CCCCCC
Q ss_conf 886499888887728999999998578--------11146888999999999999997131122----------466557
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVP--------IEKKCRLHFYEFMKDVHSRIIMYRKKIEF----------GEILES 126 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~--------~~~K~R~HFh~FM~~ih~~l~~~~~~~~~----------~~~~~~ 126 (404)
..+=+-|-|+.|+|||--.-.|.-..+ +..=||+-=- .+..++++.-+..-+ .....+
T Consensus 64 ~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAAr----svA~RvAeel~~~~G~~VGY~iRfe~~~s~~ 139 (845)
T COG1643 64 QNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAAR----SVAERVAEELGEKLGETVGYSIRFESKVSPR 139 (845)
T ss_pred HCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHH----HHHHHHHHHHCCCCCCEEEEEEEEECCCCCC
T ss_conf 697899867998875878899999600166875996584389999----9999999983898676543799962267877
Q ss_pred CHHH---------HHH-HHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCC--CEEEEECCCCHHHHHCCCCCHHHH
Q ss_conf 8078---------999-9996138799984232047135888999999998549--689981786867752387405668
Q gi|254781047|r 127 DPIP---------LVA-SSIALESRVLCFDEFMITNIADAIILSRLFAALFSHG--CIIVMTSNFIPENLYKDEINRNVL 194 (404)
Q Consensus 127 dpl~---------~va-~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~g--v~lV~TSN~~P~dLY~~GLqR~~F 194 (404)
..|+ .+- +-+.+++.++-|||||=.-+.-..+|+=+.+-+-.+. +.+|++|-+.=.+ +|
T Consensus 140 Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~~---------rf 210 (845)
T COG1643 140 TRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAE---------RF 210 (845)
T ss_pred CEEEEECCHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH---------HH
T ss_conf 146895147999998438020458779970133556888999999999986468870599972535889---------99
Q ss_pred HHHHHHHHHCCEEEECCCCCHHH
Q ss_conf 98999998505089804731122
Q gi|254781047|r 195 VSFIELLEKKLEIISLDSGQDYR 217 (404)
Q Consensus 195 lPfI~~lk~~~~V~~l~~~~DYR 217 (404)
-- .-..|.|++++| +-|+
T Consensus 211 s~----~f~~apvi~i~G-R~fP 228 (845)
T COG1643 211 SA----YFGNAPVIEIEG-RTYP 228 (845)
T ss_pred HH----HCCCCCEEEECC-CCCC
T ss_conf 97----628998787558-8664
No 393
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=71.84 E-value=4.3 Score=20.65 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=20.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 86499888887728999999998578
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
.+.+.+-|+.|.|||-+|+.+-..+|
T Consensus 149 r~nilI~G~TgsGKTTll~all~~i~ 174 (320)
T PRK13894 149 HRNILVIGGTGSGKTTLVNAIINEMV 174 (320)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 87589985888656899999986320
No 394
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=71.58 E-value=8 Score=18.92 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=11.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHH
Q ss_conf 6783022035302268999999
Q gi|254781047|r 222 SILPIYMTPLNSYNRVLMDKLW 243 (404)
Q Consensus 222 ~~~~~y~~p~~~~~~~~l~~~f 243 (404)
++-++-..|+.++++..+++.+
T Consensus 311 sGrPvl~~plteEa~r~idrf~ 332 (593)
T COG2401 311 SGRPVLPTPLTEEAKRYIDRFV 332 (593)
T ss_pred CCCEEECCCHHHHHHHHHHHHH
T ss_conf 8976303120578999999872
No 395
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=71.52 E-value=8.1 Score=18.90 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9988888772899999999857
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALV 90 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l 90 (404)
+=|-|+=|.|||-|+.+....+
T Consensus 25 taivG~NGaGKSTLl~~i~~~l 46 (204)
T cd03240 25 TLIVGQNGAGKTTIIEALKYAL 46 (204)
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999899999999999986304
No 396
>PRK13768 GTPase; Provisional
Probab=71.43 E-value=4.7 Score=20.39 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 6499888887728999999998578
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
-|+.+-|+.|.|||-+...+.+.+.
T Consensus 3 ~~~~ViGpaGSGKsT~~~~l~~~l~ 27 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLVGALSDWLE 27 (253)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1899989999988999999999999
No 397
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=71.16 E-value=2.5 Score=22.19 Aligned_cols=16 Identities=38% Similarity=0.399 Sum_probs=12.9
Q ss_pred EEECCCCCCHHHHHHH
Q ss_conf 9888887728999999
Q gi|254781047|r 70 YLHGDVGQGKSMLMNL 85 (404)
Q Consensus 70 YL~G~VG~GKT~LMdl 85 (404)
-|+|+.|+|||||+=-
T Consensus 5 ~l~g~gG~GKS~lal~ 20 (239)
T cd01125 5 ALVAPGGTGKSSLLLV 20 (239)
T ss_pred EEEECCCCCHHHHHHH
T ss_conf 9980899888999999
No 398
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=71.00 E-value=8.3 Score=18.83 Aligned_cols=25 Identities=28% Similarity=0.623 Sum_probs=12.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 6499888887728999999998578
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
+-+=++|+-|.|||-++-+.|.-..
T Consensus 290 ~tvAiVG~SG~gKsTI~rLlfRFyD 314 (497)
T COG5265 290 KTVAIVGESGAGKSTILRLLFRFYD 314 (497)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 4799980788747799999999817
No 399
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=70.89 E-value=7 Score=19.28 Aligned_cols=44 Identities=18% Similarity=0.278 Sum_probs=34.5
Q ss_pred HHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHH-HHHHHHHC
Q ss_conf 9999999854968998178686775238740566898-99999850
Q gi|254781047|r 160 SRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVS-FIELLEKK 204 (404)
Q Consensus 160 ~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlP-fI~~lk~~ 204 (404)
.+|+-..-.+||.||...+.+-++ -.|+-.|+.|+. .|+.|+++
T Consensus 67 ~~l~c~ah~~~vr~v~~~~~~~~~-v~np~~R~~FI~s~V~flrk~ 111 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDVPLEQ-ISNPTYRTQWIQQKVELAKSQ 111 (358)
T ss_pred HHHHHHHHHCCCEEEEECCCCHHH-CCCHHHHHHHHHHHHHHHHHC
T ss_conf 536214442781899955753664-389899999999999999981
No 400
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=70.41 E-value=8.5 Score=18.75 Aligned_cols=142 Identities=19% Similarity=0.226 Sum_probs=73.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCH-------HHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCHHHHHHHH----H
Q ss_conf 99888887728999999998578111-------4688899999999999999-7131122466557807899999----9
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIEK-------KCRLHFYEFMKDVHSRIIM-YRKKIEFGEILESDPIPLVASS----I 136 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~~-------K~R~HFh~FM~~ih~~l~~-~~~~~~~~~~~~~dpl~~va~~----l 136 (404)
+-+-|.||.|||++--+.-++.+..+ |.++-= ..++..+.. +..+. .....--++.+... .
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~----~~~~~ai~~~l~~~p---~~~~~~~~e~~~~~L~al~ 126 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSD----ATLLEAIVADLESQP---KVNVNAVLEQIDRELAALV 126 (269)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHH----HHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHH
T ss_conf 999744777636999999985578851799835763017----889999999840583---2006889999999999999
Q ss_pred HCCC--CEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEE-EEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEE-EECCC
Q ss_conf 6138--799984232047135888999999998549689-9817868677523874056689899999850508-98047
Q gi|254781047|r 137 ALES--RVLCFDEFMITNIADAIILSRLFAALFSHGCII-VMTSNFIPENLYKDEINRNVLVSFIELLEKKLEI-ISLDS 212 (404)
Q Consensus 137 ~~~~--~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~l-V~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V-~~l~~ 212 (404)
++.. .++..||-|.-.. ++|=-=|+|..+-..+... =.-=|-.| -|++..=+|....+.++|.+ +++..
T Consensus 127 ~~g~r~v~l~vdEah~L~~-~~le~Lrll~nl~~~~~~~l~ivL~Gqp------~L~~~lr~~~l~e~~~R~~ir~~l~P 199 (269)
T COG3267 127 KKGKRPVVLMVDEAHDLND-SALEALRLLTNLEEDSSKLLSIVLIGQP------KLRPRLRLPVLRELEQRIDIRIELPP 199 (269)
T ss_pred HHCCCCEEEEEHHHHHHCH-HHHHHHHHHHHHCCCCCCCEEEEECCCC------CCCHHHCHHHHHHHHHEEEEEEECCC
T ss_conf 8178873785016766175-4899999988620346672114550780------11435442889854316778995388
Q ss_pred -----CCHHHHCCCCCC
Q ss_conf -----311221123678
Q gi|254781047|r 213 -----GQDYRRKEQSIL 224 (404)
Q Consensus 213 -----~~DYR~~~~~~~ 224 (404)
..+|=+..+.++
T Consensus 200 ~~~~~t~~yl~~~Le~a 216 (269)
T COG3267 200 LTEAETGLYLRHRLEGA 216 (269)
T ss_pred CCHHHHHHHHHHHHHCC
T ss_conf 67478999999998505
No 401
>KOG1969 consensus
Probab=70.23 E-value=6 Score=19.74 Aligned_cols=135 Identities=16% Similarity=0.080 Sum_probs=69.3
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 6666688649988888772899999999857811-------146888999999999999997131122466557807899
Q gi|254781047|r 60 KRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIE-------KKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLV 132 (404)
Q Consensus 60 ~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~-------~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~v 132 (404)
....++.|=+.|.|++|-|||-|--..-..+--+ --|-.| .||.++-.+-++.+.. +..
T Consensus 320 ~s~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~------~v~~kI~~avq~~s~l-~ad------- 385 (877)
T KOG1969 320 PSKRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAP------MVKEKIENAVQNHSVL-DAD------- 385 (877)
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHH------HHHHHHHHHHHHCCCC-CCC-------
T ss_conf 66798400687536887872479999998628548873255543478------8999999988641122-568-------
Q ss_pred HHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH----HC-CCCCH-------HHHHHHHHH
Q ss_conf 9999613879998423204713588899999999854968998178686775----23-87405-------668989999
Q gi|254781047|r 133 ASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL----YK-DEINR-------NVLVSFIEL 200 (404)
Q Consensus 133 a~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL----Y~-~GLqR-------~~FlPfI~~ 200 (404)
..-.-|-+||.-=.+.|--=+|- ++.+.... -+|---.|++= -+ .-|-| ++|.|+..-
T Consensus 386 -----srP~CLViDEIDGa~~~~Vdvil----slv~a~~k-~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~ 455 (877)
T KOG1969 386 -----SRPVCLVIDEIDGAPRAAVDVIL----SLVKATNK-QATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRP 455 (877)
T ss_pred -----CCCCEEEEECCCCCCHHHHHHHH----HHHHHHCC-HHHCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCHHHHH
T ss_conf -----88635998424687289999999----99974161-421686632034555304654587789864755533331
Q ss_pred HHHCCEEEECCCCCHHHH
Q ss_conf 985050898047311221
Q gi|254781047|r 201 LEKKLEIISLDSGQDYRR 218 (404)
Q Consensus 201 lk~~~~V~~l~~~~DYR~ 218 (404)
|+..|.++++--+.+=|+
T Consensus 456 Lr~~A~ii~f~~p~~s~L 473 (877)
T KOG1969 456 LRPFAEIIAFVPPSQSRL 473 (877)
T ss_pred CCCCEEEEEECCCCHHHH
T ss_conf 021048999569976689
No 402
>PRK03918 chromosome segregation protein; Provisional
Probab=70.22 E-value=3.9 Score=20.93 Aligned_cols=100 Identities=14% Similarity=0.285 Sum_probs=50.1
Q ss_pred HHHHHHHHHCCCCCC--------CCCCEE-EECCEEEEECCCCCCCCCCCHHHHHHH--HCCHHHHHHHHHHCCEEEECC
Q ss_conf 999999986044446--------776327-636808996122021111019998521--024689999985378899818
Q gi|254781047|r 238 LMDKLWAHITKGKKS--------LSLNIS-TEGGYEIHVPFFCSRVSRFSFFDLCDR--PLSANDFVEIANRFDVVIIND 306 (404)
Q Consensus 238 ~l~~~f~~l~~~~~~--------~~~~i~-v~~gR~i~v~~~~~~va~f~F~eLC~~--~lg~~DYi~Ia~~f~ti~I~~ 306 (404)
..+..|..+++|.-. ....+. ...|...++...+||=. | ++.- .+|-++|+ +....++|||.
T Consensus 751 ~an~~~~~lt~g~y~~~~~~~~~~~~~~~~~~~g~~r~~~~LSGGE~---~--~~aLAL~Lals~~~--~~~~~~lflDE 823 (882)
T PRK03918 751 IASEIFEELTEGKYSGVTVKAEENKVKLFVVYEGKERPLGFLSGGER---I--ALGLAFRLALSMYL--AGEISLLILDE 823 (882)
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCEEEEEECCCEECCCCCCCHHHH---H--HHHHHHHHHHHHHH--HCCCCEEEEEC
T ss_conf 99999999829986657531466761599935983617777888899---9--99999999999987--14999499879
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCE-EEECCCCHHHH
Q ss_conf 98787246389998999999982289828-99807897880
Q gi|254781047|r 307 IPLLKEDRKDWIKRFIMLIDVFYEHKIGL-IISSEENIEDL 346 (404)
Q Consensus 307 VP~l~~~~~d~arRFI~LID~lYd~kv~L-i~sa~~~~~~L 346 (404)
+ ++.-..+...+++..+..+=.....+ |+|-...+.+-
T Consensus 824 g--fg~LD~~~~~~~~~~L~~l~~~~~qi~IISH~~el~~~ 862 (882)
T PRK03918 824 P--TPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDA 862 (882)
T ss_pred C--CCCCCHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH
T ss_conf 9--78879899999999999986589989999575789986
No 403
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=69.99 E-value=8.7 Score=18.69 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 998888877289999999985
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFAL 89 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~ 89 (404)
+-|-|.+|.|||.++..+--.
T Consensus 33 ~viaarpg~GKT~f~~~~a~~ 53 (271)
T cd01122 33 IILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999968998699999999999
No 404
>TIGR01192 chvA glucan exporter ATP-binding protein; InterPro: IPR005896 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. In general, this protein is in some ways implicated in osmo-regulation and is suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bacterial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmo-adaptaion are related. ; GO: 0005215 transporter activity, 0006810 transport.
Probab=69.82 E-value=8.8 Score=18.67 Aligned_cols=112 Identities=17% Similarity=0.200 Sum_probs=68.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCC----------------HHHHHHHHHHHHH----------------------
Q ss_conf 88649988888772899999999857811----------------1468889999999----------------------
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIE----------------KKCRLHFYEFMKD---------------------- 106 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~----------------~K~R~HFh~FM~~---------------------- 106 (404)
.-+-+=|-||-|-|||-|.||+=.--..+ +..|----.-.++
T Consensus 360 AG~TvAIVGPTGAGKTTLiNLLQRVydP~~G~I~IDG~~I~~v~r~SLR~s~ATVFQDAGL~~R~Ir~NI~lG~~~At~~ 439 (592)
T TIGR01192 360 AGQTVAIVGPTGAGKTTLINLLQRVYDPKVGQILIDGIDINTVTRESLRKSIATVFQDAGLLNRSIRENIRLGREGATDE 439 (592)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCEEHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCHH
T ss_conf 47568987789971789988775310698654887242400103477887887787310200131233200377778778
Q ss_pred --------------HHHHHHHHH---CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHH
Q ss_conf --------------999999971---311224665578078999999613879998423-20471358889999999985
Q gi|254781047|r 107 --------------VHSRIIMYR---KKIEFGEILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFS 168 (404)
Q Consensus 107 --------------ih~~l~~~~---~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~ 168 (404)
|.++++.+. |..++.-++.+--=-.||..+.|+.++|.+||= ---||-.-.=++.=.+.|-+
T Consensus 440 E~~~Aa~aAaA~DFI~~~~~~Y~T~VGERG~~LSGGERQR~AIARAILKNAPILvLDEATSALDVETE~RVK~AiDal~~ 519 (592)
T TIGR01192 440 EVVEAAKAAAASDFIEKRLNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRK 519 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 99999975436677886413444001146774777237899999999723884652001221001456789988887521
Q ss_pred CCCEEEEE
Q ss_conf 49689981
Q gi|254781047|r 169 HGCIIVMT 176 (404)
Q Consensus 169 ~gv~lV~T 176 (404)
...+.|+-
T Consensus 520 ~RTTFIIA 527 (592)
T TIGR01192 520 NRTTFIIA 527 (592)
T ss_pred CCCEEEEE
T ss_conf 88547762
No 405
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=69.72 E-value=5.9 Score=19.79 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 4998888877289999999985781
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
=+-|-|+-|.|||.|++...+..|.
T Consensus 3 livl~GPSG~GK~tl~~~L~~~~~~ 27 (182)
T pfam00625 3 PIVLSGPSGVGKSHIKKALLDEYPE 27 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6999898999999999999984866
No 406
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=69.70 E-value=3.1 Score=21.56 Aligned_cols=137 Identities=16% Similarity=0.176 Sum_probs=66.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHH--------------H-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 688649988888772899999999857811146--------------8-8899999999999999713112246655780
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKC--------------R-LHFYEFMKDVHSRIIMYRKKIEFGEILESDP 128 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~--------------R-~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dp 128 (404)
.....+||-|-+|+|||.-.-.--..+...... | .+=|+-...+...|..-+. +.....
T Consensus 291 GtG~cLYISGVPGTGKTATV~eVIr~L~~~~~~~~lp~F~fVEINGMkLt~P~qaY~~L~e~Ltg~k~------~~~~~A 364 (650)
T PTZ00112 291 GTGQILYISGVPGTGKTATVYMVIKELQNKKLKGQLPWFNLFEINGVNLVHPNAAYRVFYKKLFNKKP------PNALNS 364 (650)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHHHHCCCC------CCHHHH
T ss_conf 86656999789999800369999999999997089998159997363779878899999999848988------867899
Q ss_pred HHHHHHHHH--CCCCEEEEEEEEECCCHHHHHHHHHHHHHH--HCCCEEEEECCCC--HHHHHC-----CCCCHHHHHHH
Q ss_conf 789999996--138799984232047135888999999998--5496899817868--677523-----87405668989
Q gi|254781047|r 129 IPLVASSIA--LESRVLCFDEFMITNIADAIILSRLFAALF--SHGCIIVMTSNFI--PENLYK-----DEINRNVLVSF 197 (404)
Q Consensus 129 l~~va~~l~--~~~~lLCfDEF~V~DiaDAmil~rl~~~lf--~~gv~lV~TSN~~--P~dLY~-----~GLqR~~FlPf 197 (404)
....-+... +..-||.+||.-.-=-..--.|-.||++=- ....++|+-+|+. |+.|-. =|++|=.|-|.
T Consensus 365 ~~lL~k~F~~~r~p~VlLvDELD~LvTkkQ~VlYNLFdWPT~~~SkLIVIaIANTMDLPERL~~RVsSRLGltRltF~PY 444 (650)
T PTZ00112 365 YKELDKLFNNNRTPSILIVDEADYIVTKTQKVLFTLFDWPTKKNSKLILIIISNTMDLPYKMKPSCRSRLAFGRLVFSPY 444 (650)
T ss_pred HHHHHHHHCCCCCCEEEEECHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCEECCCCC
T ss_conf 99999982689971899971577776367745777366889888707999985067860656666555228850043998
Q ss_pred -----HHHHHHCCE
Q ss_conf -----999985050
Q gi|254781047|r 198 -----IELLEKKLE 206 (404)
Q Consensus 198 -----I~~lk~~~~ 206 (404)
.++|+.++.
T Consensus 445 t~~QL~eII~sRL~ 458 (650)
T PTZ00112 445 KYQQIEKVIKERLE 458 (650)
T ss_pred CHHHHHHHHHHHHC
T ss_conf 99999999999862
No 407
>PRK07413 hypothetical protein; Validated
Probab=69.65 E-value=8.3 Score=18.84 Aligned_cols=166 Identities=16% Similarity=0.149 Sum_probs=90.6
Q ss_pred EEEEECCCCCCHHHH-HHHHHHHCC----CCHHHHHHHHHHHHH------HHHHHHHHHCC---------CCCCC---CC
Q ss_conf 499888887728999-999998578----111468889999999------99999997131---------12246---65
Q gi|254781047|r 68 GIYLHGDVGQGKSML-MNLFFALVP----IEKKCRLHFYEFMKD------VHSRIIMYRKK---------IEFGE---IL 124 (404)
Q Consensus 68 GlYL~G~VG~GKT~L-MdlFy~~l~----~~~K~R~HFh~FM~~------ih~~l~~~~~~---------~~~~~---~~ 124 (404)
-|.+|=|-|.|||-= |-+-..++- ..++.|+..-.||.- -+..+..++.. .+... ..
T Consensus 21 lVqVYTGnGKGKTTAAlGlalRA~G~Gl~~~~~~rV~vvQFiKG~~~~~gE~~a~e~l~~~~p~~i~~~~~G~~~~~~~~ 100 (382)
T PRK07413 21 QLHVYDGEGKGKSQAALGVVLRTIGLGICEKRQTRVLLLRFLKGPGRAYDEDAAIEALQRGFPHLIDQVRTGRAEFFGAD 100 (382)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCEECCC
T ss_conf 69997689977899999999997348876567865999994727998776688999985059840799861344322689
Q ss_pred CCCHH--------HHHHHHHH--CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHC--CCEEEEECCCCHHHHHCCCCCHH
Q ss_conf 57807--------89999996--13879998423204713588899999999854--96899817868677523874056
Q gi|254781047|r 125 ESDPI--------PLVASSIA--LESRVLCFDEFMITNIADAIILSRLFAALFSH--GCIIVMTSNFIPENLYKDEINRN 192 (404)
Q Consensus 125 ~~dpl--------~~va~~l~--~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~--gv~lV~TSN~~P~dLY~~GLqR~ 192 (404)
..++. ...|++.. .+++++-+||.-+.=--.-+-+..+++.|-++ .+-+|.|--.+|.+|-.
T Consensus 101 ~~~~~D~~~A~~gwe~Ak~~i~sg~ydlVVLDEIn~Al~~Gll~~deVl~~L~~RP~~~eVVlTGR~AP~eLIe------ 174 (382)
T PRK07413 101 EITKFDRQEAQRGWDIAKGAIASGLYSVVVLDELNPVLDLGLLPVDEVVKTLKSRPEGLEIIITGRAAPQSLLD------ 174 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHH------
T ss_conf 99889999999999999999848998989972166784579805999999997099998899959999999998------
Q ss_pred HHHHHHHHHHHCCEEEECC---CCCHH---H-HCCCCCCCEEEECCCHHHHHHHHHHHHHHCCC
Q ss_conf 6898999998505089804---73112---2-11236783022035302268999999986044
Q gi|254781047|r 193 VLVSFIELLEKKLEIISLD---SGQDY---R-RKEQSILPIYMTPLNSYNRVLMDKLWAHITKG 249 (404)
Q Consensus 193 ~FlPfI~~lk~~~~V~~l~---~~~DY---R-~~~~~~~~~y~~p~~~~~~~~l~~~f~~l~~~ 249 (404)
. -=.|-+|. .+.+- + .....+-++|--..-..|.+.+.-.+..+..|
T Consensus 175 -------~---ADLVTEMrp~~hp~~~~~~~~~~~~~~I~VYTG~GKGKTTAAlGlAlRA~G~G 228 (382)
T PRK07413 175 -------I---ADLHSEMRAHRRPEASEDGVPFNSSGGIEIYTGEGKGKSTSALGKALQAIGRG 228 (382)
T ss_pred -------H---HCHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf -------6---23355257656886553454457889759955899769999999999974499
No 408
>TIGR01618 phage_P_loop phage nucleotide-binding protein; InterPro: IPR006505 These sequences represent an uncharacterised family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of these proteins is unknown..
Probab=69.45 E-value=2.2 Score=22.50 Aligned_cols=116 Identities=15% Similarity=0.090 Sum_probs=57.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCC------------------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 649988888772899999999857811------------------------14688899999999999999713112246
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIE------------------------KKCRLHFYEFMKDVHSRIIMYRKKIEFGE 122 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~------------------------~K~R~HFh~FM~~ih~~l~~~~~~~~~~~ 122 (404)
--+-|||.+|.|||=+.. .+|.+ .-.+-|=-++|.|.-.+
T Consensus 14 ~~~lIYG~~G~GKTS~~K----~l~GktL~l~~D~SSkVL~G~~nvdiim~~~d~~~~~~~~~e~~~~------------ 77 (229)
T TIGR01618 14 FRYLIYGKPGLGKTSTIK----YLPGKTLVLSLDKSSKVLAGDENVDIIMADLDDEKPIQEMVEFYKE------------ 77 (229)
T ss_pred CEEEEECCCCCCCCCEEE----ECCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHH------------
T ss_conf 368887589887230566----4588789883678644346899833899860699847899999999------------
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECC-CCHHHHHCCCCCH--HHHHHHHH
Q ss_conf 65578078999999613879998423204713588899999999854968998178-6867752387405--66898999
Q gi|254781047|r 123 ILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSN-FIPENLYKDEINR--NVLVSFIE 199 (404)
Q Consensus 123 ~~~~dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN-~~P~dLY~~GLqR--~~FlPfI~ 199 (404)
.++..+.+|+.|-+|= ++.|+...+..-.. .|=| +.|+-= --|| --|+-.+.
T Consensus 78 ---------~~~~~~~~Y~niViDN-----------is~lq~~~L~~~gr--~~K~~~~p~~q---~Y~~~~~~~~d~~~ 132 (229)
T TIGR01618 78 ---------LQNIQAEEYDNIVIDN-----------ISELQKLWLINLGR--EAKNGRSPELQ---HYQKLDLYFLDLLT 132 (229)
T ss_pred ---------HHCCHHHCCCEEEEEC-----------HHHHHHHHHHHCCC--CCCCCCCCCCC---CHHHHHHHHHHHHH
T ss_conf ---------7322534576589814-----------27899999984684--42457886500---03688899999999
Q ss_pred HHHH--CCEEEECCCCCHHHHCCCCC
Q ss_conf 9985--05089804731122112367
Q gi|254781047|r 200 LLEK--KLEIISLDSGQDYRRKEQSI 223 (404)
Q Consensus 200 ~lk~--~~~V~~l~~~~DYR~~~~~~ 223 (404)
+|++ +-.|+-..-..+--....+|
T Consensus 133 vl~~l~~~~i~~tAwe~~~~~~~e~G 158 (229)
T TIGR01618 133 VLKELKNKNIYVTAWEDTNQLSLESG 158 (229)
T ss_pred HHHHCCCCEEEEEEEECCCCCCHHHH
T ss_conf 99855898799987656675340114
No 409
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=69.39 E-value=9 Score=18.61 Aligned_cols=108 Identities=15% Similarity=0.110 Sum_probs=58.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE-E
Q ss_conf 998888877289999999985781114688899999999999999713112246655780789999996138799984-2
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFD-E 147 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfD-E 147 (404)
+.+.|-.|.|||-|-..++..+......=+|+- .|-+.. .||=| .
T Consensus 2 iW~tGLsgsGKTTlA~~l~~~L~~~~~~~~~lD------------------------GD~iR~----------~l~~~lg 47 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD------------------------GDNVRH----------GLNKDLG 47 (149)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC------------------------CHHHHH----------HHCCCCC
T ss_conf 898799999999999999999998699759977------------------------488997----------7365559
Q ss_pred EEECC-CHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHH-HCCEEEECCCCCHHHHC
Q ss_conf 32047-13588899999999854968998178686775238740566898999998-50508980473112211
Q gi|254781047|r 148 FMITN-IADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLE-KKLEIISLDSGQDYRRK 219 (404)
Q Consensus 148 F~V~D-iaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk-~~~~V~~l~~~~DYR~~ 219 (404)
|...| ...+..+..+-..|.++|+.+|++-..|.++. |+..- +.+. .++-.+.++...+-..+
T Consensus 48 ys~~~R~~n~~r~~~lak~l~~qg~~VIvs~isp~~~~------R~~~r---~~i~~~~y~eIyl~~~le~~~~ 112 (149)
T cd02027 48 FSREDREENIRRIAEVAKLLADAGLIVIAAFISPYRED------REAAR---KIIGGGDFLEVFVDTPLEVCEQ 112 (149)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH------HHHHH---HHCCCCCEEEEEECCCHHHHHH
T ss_conf 88788999999999999999837982788416788999------99999---8747776699997187899987
No 410
>KOG0927 consensus
Probab=69.25 E-value=9 Score=18.59 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=32.5
Q ss_pred HHHHHHHCCCCEEEEEEEEEC-CCHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 999999613879998423204-713588899999999854968998178
Q gi|254781047|r 131 LVASSIALESRVLCFDEFMIT-NIADAIILSRLFAALFSHGCIIVMTSN 178 (404)
Q Consensus 131 ~va~~l~~~~~lLCfDEF~V~-DiaDAmil~rl~~~lf~~gv~lV~TSN 178 (404)
..|+.|..+-.||.+||=.-+ |.+.-.-|...+... +++ +||.+|-
T Consensus 231 aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~-d~~-~lVi~sh 277 (614)
T KOG0927 231 ALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY-DRI-ILVIVSH 277 (614)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHC-CCC-EEEEEEC
T ss_conf 9999883499878743875678899999999999853-576-1899935
No 411
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=68.96 E-value=5.4 Score=20.04 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=18.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 6499888887728999999998578
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
+-+-+-|+.|.|||-||+.+-..+|
T Consensus 145 ~nilVsGgTGSGKTTllnaL~~~i~ 169 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9689991777756899999998640
No 412
>PRK03839 putative kinase; Provisional
Probab=68.69 E-value=7 Score=19.29 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=23.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9988888772899999999857811146888999999
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMK 105 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~ 105 (404)
+-|-|.+|+|||-+-.++-+.+..+ -++..++..
T Consensus 3 I~ITGTPGtGKTTva~~La~~lg~~---~i~v~~la~ 36 (180)
T PRK03839 3 IAITGTPGVGKTTISKLLAEKLGYE---YVNLRDFAL 36 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCE---EEEHHHHHH
T ss_conf 9997899999899999999976987---987999999
No 413
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=68.49 E-value=9.4 Score=18.49 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=47.9
Q ss_pred CCEEEEEEEEE-CC-CHH--HHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCE---EEECCC
Q ss_conf 87999842320-47-135--888999999998549689981786867752387405668989999985050---898047
Q gi|254781047|r 140 SRVLCFDEFMI-TN-IAD--AIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLE---IISLDS 212 (404)
Q Consensus 140 ~~lLCfDEF~V-~D-iaD--Amil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~---V~~l~~ 212 (404)
+-++-+||+-- -. ..+ --.+.||-..--..|+-||.|+.|+=.|. |.-|++++. .+.+.+
T Consensus 640 ~iviiiDe~adlm~~~~k~ve~~i~rLa~~ara~GIHlilatqRps~dV-------------it~ikan~psrIaf~v~s 706 (858)
T COG1674 640 YIVIIIDEYADLMMVAGKELEELIARLAQKGRAAGIHLILATQRPSVDV-------------ITGIKANIPTRIALRLSS 706 (858)
T ss_pred CEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCH-------------HHHHHHCCCCCEEEEECC
T ss_conf 0899944478886123176999999999978765826999748999504-------------088885387525665168
Q ss_pred CCHHHHCCC
Q ss_conf 311221123
Q gi|254781047|r 213 GQDYRRKEQ 221 (404)
Q Consensus 213 ~~DYR~~~~ 221 (404)
..|+|..-.
T Consensus 707 ~~dsr~il~ 715 (858)
T COG1674 707 KIDSRLILG 715 (858)
T ss_pred CCCEEEEEC
T ss_conf 765256624
No 414
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701 Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=68.39 E-value=4.8 Score=20.36 Aligned_cols=110 Identities=18% Similarity=0.277 Sum_probs=64.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCC-HHH-HHHHHHHH--HH-HHHHHHHHHCCCCCCCCCC-------------
Q ss_conf 688649988888772899999999857811-146-88899999--99-9999999713112246655-------------
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIE-KKC-RLHFYEFM--KD-VHSRIIMYRKKIEFGEILE------------- 125 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~-~K~-R~HFh~FM--~~-ih~~l~~~~~~~~~~~~~~------------- 125 (404)
.+-..+-|+|+=|-|||-||.+.|.+.-.. .+- --|=-++. .. --.++-+.|++.= +-..|
T Consensus 32 ~aGEcv~L~G~SGaGKSTlLk~lYaNYlp~~G~i~~~H~G~~~DL~~a~pr~vl~vRr~ti-GYVSQFLRViPRvsalev 110 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTI-GYVSQFLRVIPRVSALEV 110 (224)
T ss_pred ECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHCCCHHHHHHHHHHHC-CCEEEEEEECCCCCHHHH
T ss_conf 3673588536888767899997663047468677776240476750768457787730033-515553031288672888
Q ss_pred -CCHHH------------------------------------------HHHHHHHCCCCEEEEEEE-EECCCHHHHHHHH
Q ss_conf -78078------------------------------------------999999613879998423-2047135888999
Q gi|254781047|r 126 -SDPIP------------------------------------------LVASSIALESRVLCFDEF-MITNIADAIILSR 161 (404)
Q Consensus 126 -~dpl~------------------------------------------~va~~l~~~~~lLCfDEF-~V~DiaDAmil~r 161 (404)
..|+. =||..+..++.+|.+||= ===|-++--..-.
T Consensus 111 V~ePL~~~G~~~~~A~~~A~~LL~rLniPERLW~LpPaTFSGGEqQRVNIARg~i~d~PiLLLdEPTASLd~~nr~vVvE 190 (224)
T TIGR02324 111 VAEPLLERGVPREAARARARELLARLNIPERLWSLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDATNRKVVVE 190 (224)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 87879872895899999999999755740244288788656605899999876525774001135540241142488999
Q ss_pred HHHHHHHCCCEEE
Q ss_conf 9999985496899
Q gi|254781047|r 162 LFAALFSHGCIIV 174 (404)
Q Consensus 162 l~~~lf~~gv~lV 174 (404)
|++..-.+|+.||
T Consensus 191 Li~e~K~~G~Ali 203 (224)
T TIGR02324 191 LIAEAKARGAALI 203 (224)
T ss_pred HHHHHHHCCCEEE
T ss_conf 9999976597689
No 415
>pfam02283 CobU Cobinamide kinase / cobinamide phosphate guanyltransferase. This family is composed of a group of bifunctional cobalamin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape.
Probab=68.34 E-value=7.1 Score=19.28 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=15.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9988888772899999999857
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALV 90 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l 90 (404)
+++-||++.|||-.---.....
T Consensus 1 iLVtGG~rSGKS~~AE~la~~~ 22 (166)
T pfam02283 1 ILVTGGARSGKSRFAERLALAS 22 (166)
T ss_pred CEEECCCCCCHHHHHHHHHHHC
T ss_conf 9886887733899999999855
No 416
>TIGR00634 recN DNA repair protein RecN; InterPro: IPR004604 DNA repair protein RecN is thought to be DNA damage inducible and involved in recombinational processes. The N-terminal region of most of the bacterial RecN proteins sequenced to date contains an ATP/GTP binding domain within an SMC-like motif. SMC-like domains are involved in chromosomal scaffolding and segregation. It is possible that the function of RecN in homologous recombination is either structural or enzymatic or both. RecN may be involved in the proper positioning of the recombining segments of DNA, ensuring normal recombination. The observation that inactivation of this gene leads to a decreased transformation efficiency, as well as increased sensitivity to DNA-damaging agents, may be due to some defect in chromosomal partitioning or positioning during these recombination-dependent processes . The protein may function presynaptically to process double-stranded breaks to produce 3 single-stranded DNA intermediates during recombination. ; GO: 0005524 ATP binding, 0006281 DNA repair, 0006310 DNA recombination.
Probab=68.25 E-value=3.2 Score=21.48 Aligned_cols=19 Identities=16% Similarity=0.478 Sum_probs=14.9
Q ss_pred HHHHHHCCEEEECCCCCCC
Q ss_conf 9998537889981898787
Q gi|254781047|r 293 VEIANRFDVVIINDIPLLK 311 (404)
Q Consensus 293 i~Ia~~f~ti~I~~VP~l~ 311 (404)
-.|+++-.+|||+..|+..
T Consensus 515 ~~LS~~~QV~cvTHlp~vA 533 (605)
T TIGR00634 515 AQLSERKQVLCVTHLPQVA 533 (605)
T ss_pred HHHHHHCCEEEECCCHHHH
T ss_conf 9985309589981837989
No 417
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=68.25 E-value=9.5 Score=18.46 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=63.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHHHHHHCCC-------------------CC-
Q ss_conf 886499888887728999999998578111----468889999999999999971311-------------------22-
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEK----KCRLHFYEFMKDVHSRIIMYRKKI-------------------EF- 120 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~----K~R~HFh~FM~~ih~~l~~~~~~~-------------------~~- 120 (404)
+-.=+||-|+=|.|||-|+-+.---+.... -..-|-+.++...|+.++.+--+. ..
T Consensus 27 ~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~ 106 (209)
T COG4133 27 AGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSG 106 (209)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 88779998999875889999997126877775785478873203568888788606534432202988889999973887
Q ss_pred ------------CCCCCCC-----------HHHHHHHHHHCCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf ------------4665578-----------0789999996138799984232-047135888999999998549689981
Q gi|254781047|r 121 ------------GEILESD-----------PIPLVASSIALESRVLCFDEFM-ITNIADAIILSRLFAALFSHGCIIVMT 176 (404)
Q Consensus 121 ------------~~~~~~d-----------pl~~va~~l~~~~~lLCfDEF~-V~DiaDAmil~rl~~~lf~~gv~lV~T 176 (404)
+-.+..| -.-.+|+-+.....|=-+||-. --|...--++..+|..=..+|..+++|
T Consensus 107 ~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllt 186 (209)
T COG4133 107 NAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLT 186 (209)
T ss_pred CHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 52049999997386653446022236468999999999727887166448532249878999999999985279889996
Q ss_pred CCCC
Q ss_conf 7868
Q gi|254781047|r 177 SNFI 180 (404)
Q Consensus 177 SN~~ 180 (404)
|--+
T Consensus 187 tHq~ 190 (209)
T COG4133 187 THQP 190 (209)
T ss_pred CCCC
T ss_conf 4775
No 418
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=68.24 E-value=9.5 Score=18.46 Aligned_cols=52 Identities=31% Similarity=0.392 Sum_probs=35.2
Q ss_pred HHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHC-CCEEEEECCCCH
Q ss_conf 8999999613879998423-204713588899999999854-968998178686
Q gi|254781047|r 130 PLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSH-GCIIVMTSNFIP 181 (404)
Q Consensus 130 ~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~-gv~lV~TSN~~P 181 (404)
-.+|..|+.+-+||.+||= -=-|+.....+-+++..|-+. |+++|.+|-..+
T Consensus 153 v~iAraL~~~P~iLlLDEPtsgLD~~~~~~i~~li~~l~~~~g~TiiivtHdl~ 206 (269)
T PRK11831 153 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP 206 (269)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 999999975999999828756799999999999999999852989999864989
No 419
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=68.18 E-value=9.5 Score=18.45 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 688649988888772899999999
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFF 87 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy 87 (404)
++-+=+.|-|+-|+|||-++.|.-
T Consensus 409 ~~G~t~AlVG~SGsGKSTii~LL~ 432 (1467)
T PTZ00265 409 KEGKTYAFVGESGCGKSTILKLIE 432 (1467)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 389779986688875667999996
No 420
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=68.12 E-value=4 Score=20.85 Aligned_cols=20 Identities=45% Similarity=0.735 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99888887728999999998
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFA 88 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~ 88 (404)
+=|.|+.|+|||.+.+.|-+
T Consensus 5 IgiTG~igsGKStv~~~l~~ 24 (199)
T PRK00081 5 IGLTGGIGSGKSTVANIFAE 24 (199)
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99578887779999999998
No 421
>PRK12608 transcription termination factor Rho; Provisional
Probab=68.07 E-value=6 Score=19.74 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=23.8
Q ss_pred CEEEEEEE--EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 79998423--204713588899999999854968998178686775
Q gi|254781047|r 141 RVLCFDEF--MITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404)
Q Consensus 141 ~lLCfDEF--~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404)
-+|.+||= +|+|.-... +|-|+..|+-.+|++=
T Consensus 166 ivLLIDERPEEVTdm~r~v-----------~gEVvaSTfD~~~~~h 200 (379)
T PRK12608 166 MVLLIDERPEEVTDMKRSV-----------KGEVYASTFDRPYDRH 200 (379)
T ss_pred EEEECCCCCHHHHHHHHHC-----------CEEEEEECCCCCHHHH
T ss_conf 9998168935888888623-----------7079997798998999
No 422
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP); InterPro: IPR005292 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to the ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux reduced its function. The C-terminal domain seems to be highly conserved. ; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=67.86 E-value=3.3 Score=21.40 Aligned_cols=74 Identities=20% Similarity=0.340 Sum_probs=41.1
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCC------CCCCCE--EEEECCCCCCH
Q ss_conf 9999999748877898999999999999999861354333225664310246666------668864--99888887728
Q gi|254781047|r 8 SRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRK------YCSMQG--IYLHGDVGQGK 79 (404)
Q Consensus 8 ~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~kG--lYL~G~VG~GK 79 (404)
+|.+..++..+++||.--++.|+.=+.-+. -.-+++-|.|- ...++ -.-|+| +=.-|+|||||
T Consensus 610 KRl~~FLS~EEL~P~S~ER~~i~~G~G~~~-----ITv~~aTFTWA----~~~PPTL~~~~~~~P~GALVAVVG~VGCGK 680 (1542)
T TIGR00957 610 KRLRIFLSHEELEPDSIERRTIKPGEGTNS-----ITVKNATFTWA----RDLPPTLNGITFSIPEGALVAVVGQVGCGK 680 (1542)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCEE-----EEEECCEEEEC----CCCCCCCCCCEEECCCCCEEEEECCCCCCH
T ss_conf 999987422048987402411368897026-----88742601103----775595232015448862689875778776
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999857
Q gi|254781047|r 80 SMLMNLFFALV 90 (404)
Q Consensus 80 T~LMdlFy~~l 90 (404)
|=|+.++..-.
T Consensus 681 SSL~SALLaEM 691 (1542)
T TIGR00957 681 SSLLSALLAEM 691 (1542)
T ss_pred HHHHHHHHHHH
T ss_conf 89999998632
No 423
>PRK04296 thymidine kinase; Provisional
Probab=67.76 E-value=4.8 Score=20.36 Aligned_cols=70 Identities=11% Similarity=0.033 Sum_probs=45.1
Q ss_pred HHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCH
Q ss_conf 96138799984232047135888999999998549689981786867752387405668989999985050898047311
Q gi|254781047|r 136 IALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQD 215 (404)
Q Consensus 136 l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~D 215 (404)
...+++++.+||-|--+-.+ +-.+.+.+-+.|+.+++.. | ..-.+|+.|-+...+|.--=.|..|.+-..
T Consensus 77 ~~~~~dvI~IDEaQFf~~~~---i~~~~~~~~~~~~~Viv~G------L-d~Df~~~~F~~~~~Li~~Ad~V~kl~a~C~ 146 (197)
T PRK04296 77 EGGKIDCVLIDEAQFLDKEQ---VVQLAEVVDDLGIPVICYG------L-DTDFRGEPFEGSPYLLALADKVTELKAICV 146 (197)
T ss_pred CCCCCCEEEECCHHCCCHHH---HHHHHHHHHHCCCEEEEEE------E-CCCCCCCCCHHHHHHHHHCCCEEEEEEECC
T ss_conf 04785689972021279899---9999999983185899976------5-033024865439999972680999743977
No 424
>pfam01121 CoaE Dephospho-CoA kinase. This family catalyses the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24. This enzyme uses ATP in its reaction.
Probab=67.48 E-value=4.1 Score=20.77 Aligned_cols=20 Identities=45% Similarity=0.735 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99888887728999999998
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFA 88 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~ 88 (404)
+=|.|+.|.|||.+..+|-+
T Consensus 3 IgiTG~IgsGKStv~~~l~~ 22 (179)
T pfam01121 3 VGLTGGIGSGKSTVANLFAD 22 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99857864789999999998
No 425
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein; InterPro: IPR013505 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=67.30 E-value=5.7 Score=19.89 Aligned_cols=108 Identities=20% Similarity=0.272 Sum_probs=62.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC-CCHHHHH----------------------HHHHHHHHH-----------------
Q ss_conf 499888887728999999998578-1114688----------------------899999999-----------------
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP-IEKKCRL----------------------HFYEFMKDV----------------- 107 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~-~~~K~R~----------------------HFh~FM~~i----------------- 107 (404)
=+||-|.=|.|||-+|.|...... ...+-|+ =|.||-+-.
T Consensus 31 m~fL~GHSGaGKST~lkLi~~~~~P~~G~i~~~G~d~~~L~~r~~P~LRr~iG~VFQD~~LL~drtv~dNVa~pL~iiG~ 110 (216)
T TIGR00960 31 MVFLVGHSGAGKSTLLKLILGIEKPTRGKIRFSGQDLTRLRGREVPFLRRHIGMVFQDHRLLSDRTVYDNVALPLRIIGV 110 (216)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEECCEEECCHHHHHHCCHHHHHHHHHHHCCC
T ss_conf 79985688860789999998522899860787154210015774673000104267011553116554552433552289
Q ss_pred -----HHHHHHHHCCCCCCCCCCCCHHH---------HHHHHHHCCCCEEEEEEEEE-CCCHHHHHHHHHHHHHHHCCCE
Q ss_conf -----99999971311224665578078---------99999961387999842320-4713588899999999854968
Q gi|254781047|r 108 -----HSRIIMYRKKIEFGEILESDPIP---------LVASSIALESRVLCFDEFMI-TNIADAIILSRLFAALFSHGCI 172 (404)
Q Consensus 108 -----h~~l~~~~~~~~~~~~~~~dpl~---------~va~~l~~~~~lLCfDEF~V-~DiaDAmil~rl~~~lf~~gv~ 172 (404)
..+....=.+.+.......+|.+ .||..+..+=.||.=||=-= -|.+-+.=+=+||+.+-..|++
T Consensus 111 ~~~~~~~rv~~aL~~VGL~~K~~~lP~~LSGGEQQRv~IARA~V~~P~lLLADEPTGNLD~~~S~~il~Lf~~~n~~G~T 190 (216)
T TIGR00960 111 PGRDINERVSAALEKVGLKGKAHALPVQLSGGEQQRVAIARAVVNKPALLLADEPTGNLDPELSRDILRLFEEFNRAGTT 190 (216)
T ss_pred CCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 97426789999987306112124076200485034556644430679701310889887888899999999875037854
Q ss_pred EEE
Q ss_conf 998
Q gi|254781047|r 173 IVM 175 (404)
Q Consensus 173 lV~ 175 (404)
+++
T Consensus 191 Vl~ 193 (216)
T TIGR00960 191 VLV 193 (216)
T ss_pred EEE
T ss_conf 777
No 426
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=66.62 E-value=10 Score=18.26 Aligned_cols=124 Identities=10% Similarity=0.124 Sum_probs=68.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHH----HHH-HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH--HC
Q ss_conf 8649988888772899999999857811146----888-9999999999999971311224665578078999999--61
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKC----RLH-FYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI--AL 138 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~----R~H-Fh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l--~~ 138 (404)
+.+.-+.|+-|+|||-+.-.|..++-..... .-| ..-+..++ ........ ...+.+..+...= ..
T Consensus 20 sHAYLF~G~~G~Gk~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~id~------~~~~i~~~--~i~~~i~~~~~~~~~~~ 91 (303)
T PRK07132 20 SHSFLLKSNYNNDLDESILYFLNKFNNLQSLNLNLEELPYNIFLFDI------FDEDLSKE--EFLSAIEKFSFSSFVSN 91 (303)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECC------CCCCHHHH--HHHHHHHHHHHCCCCCC
T ss_conf 61688678998679999999999972998788875456532304133------22200168--89999999973665568
Q ss_pred CCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC
Q ss_conf 38799984232047135888999999998549689981786867752387405668989999985050898047
Q gi|254781047|r 139 ESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS 212 (404)
Q Consensus 139 ~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~ 212 (404)
+++|.-+||.+--..+.|=-|=+.++.-=.+-+.+.+|.|. + +- +..|..||.++++..
T Consensus 92 ~~Kv~IIdea~~lt~~A~NaLLKtLEEPp~~~~fil~t~~~--~----------~i---l~TI~SRCq~~~f~~ 150 (303)
T PRK07132 92 QKKILIIKNIEKTSNSSLNALLKTIEEPSKNTYFLLTTKNI--N----------KV---IPTIVSRCQVINVKE 150 (303)
T ss_pred CEEEEEEECHHHCCHHHHHHHHHHCCCCCCCEEEEEEECCH--H----------HC---CHHHHHCCEEEECCC
T ss_conf 70699981655339999999998703898684899972882--4----------38---377863665663788
No 427
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=66.60 E-value=10 Score=18.26 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=15.2
Q ss_pred EEEECCCCCCHHHH-HHHHHHHC
Q ss_conf 99888887728999-99999857
Q gi|254781047|r 69 IYLHGDVGQGKSML-MNLFFALV 90 (404)
Q Consensus 69 lYL~G~VG~GKT~L-MdlFy~~l 90 (404)
+-+-|++|.|||.+ +++.++.+
T Consensus 16 ~vi~a~~g~GKS~~~~~la~~~a 38 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIA 38 (242)
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99996899999999999999999
No 428
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=66.41 E-value=10 Score=18.23 Aligned_cols=82 Identities=21% Similarity=0.238 Sum_probs=60.5
Q ss_pred HHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEE
Q ss_conf 89999996138799984232047135888999999998549689981786867752387405668989999985050898
Q gi|254781047|r 130 PLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIIS 209 (404)
Q Consensus 130 ~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~ 209 (404)
+.+...+...++-+..||||=++.+-+.+++.|... ..++.+|.-.|...=. .-|-.-+.|+.|-.-... ..++.
T Consensus 204 ~~v~~~~~~rf~~iLvDE~QDtn~~Q~~ll~~la~~--~~~l~~VGD~dQsIY~--frGA~~~ni~~f~~df~~-~~~i~ 278 (655)
T COG0210 204 PEVLEALQARFRYILVDEFQDTNPLQYELLKLLAGN--AANLFVVGDDDQSIYG--FRGADPENILDFEKDFPA-AKVIK 278 (655)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCC--CCCEEEECCCCCCEEE--ECCCCCHHHHHHHHHCCC-CCEEE
T ss_conf 478999995689898787778518799999998448--7757998589873676--778783678978763565-54676
Q ss_pred CCCCCHHHH
Q ss_conf 047311221
Q gi|254781047|r 210 LDSGQDYRR 218 (404)
Q Consensus 210 l~~~~DYR~ 218 (404)
|. ..||.
T Consensus 279 Le--~nyRS 285 (655)
T COG0210 279 LE--QNYRS 285 (655)
T ss_pred CC--CCCCC
T ss_conf 04--24488
No 429
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=66.38 E-value=3.6 Score=21.16 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=18.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 649988888772899999999857
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALV 90 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l 90 (404)
.-+=+-|+||.|||.|..-....+
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L 37 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRAL 37 (202)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 899961799867899999999999
No 430
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=66.30 E-value=7.7 Score=19.05 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 499888887728999999998578
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
=+.|-|+-|.|||-|++.+.+..|
T Consensus 3 livl~GpsG~GK~tl~~~l~~~~~ 26 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 999989998899999999997689
No 431
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=66.17 E-value=6.3 Score=19.61 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=25.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCH-----HHHHHHHHHHHH
Q ss_conf 499888887728999999998578111-----468889999999
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEK-----KCRLHFYEFMKD 106 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~-----K~R~HFh~FM~~ 106 (404)
=+-|+|.=|.|||-||+++.=|+-.+. +...-|+.|...
T Consensus 30 i~li~G~NG~GKTTll~Ai~~~LYG~~~~~~~~~~~~y~~~~~~ 73 (650)
T TIGR03185 30 IILIGGLNGAGKTTLLDAIQLGLYGKRAYCSKRGNQSYEQYLHG 73 (650)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 79997799997899999999995695100345454469999999
No 432
>pfam02456 Adeno_IVa2 Adenovirus IVa2 protein. IVa2 protein can interact with the adenoviral packaging signal and that this interaction involves DNA sequences that have previously been demonstrated to be required for packaging. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter.
Probab=66.13 E-value=5 Score=20.21 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=18.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 864998888877289999999985
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFAL 89 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~ 89 (404)
|-=.-+||+-|+|||-|+.-.-.+
T Consensus 87 P~I~vVYGPTG~GKSQLlRNlis~ 110 (370)
T pfam02456 87 PVIGVVYGPTGCGKSQLLRNLLSC 110 (370)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 449999889987789999998734
No 433
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=66.04 E-value=10 Score=18.19 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 0589999999974-88778989999999999999998613543332256643102466666688649988888772899
Q gi|254781047|r 4 DLVSSRLISLIQD-KKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSM 81 (404)
Q Consensus 4 ~~~~~~y~~~v~~-~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~ 81 (404)
..+.+.|+++.+. .++++=+.|.+.+.+. +..+.+.. ..+-+-+=-|.|+|||+
T Consensus 8 ~~~~~~~~~l~~~~~gfe~R~~Q~~Ma~~V---~~al~~~~---------------------~~~~l~iEAgTGtGKTl 62 (697)
T PRK11747 8 AQIRQAYKALQEQLPGFIPRAGQRQMIAEV---AKTLAGEY---------------------GRHILVIEAGTGVGKSL 62 (697)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHH---HHHHHCCC---------------------CCCEEEEECCCCCHHHH
T ss_conf 999999999998688997187899999999---99961666---------------------78669998999720899
No 434
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=66.01 E-value=8.2 Score=18.87 Aligned_cols=110 Identities=18% Similarity=0.202 Sum_probs=56.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH----HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 88649988888772899999999857811146888999----99999999999713112246655780789999996138
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYE----FMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALES 140 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~----FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~ 140 (404)
..+-+++-|+.|.|||-+|+..-..+|... |+|--+ ++.. |.--.+.....+......-++...+-..+-..-
T Consensus 142 ~~~siii~G~t~sGKTt~lnall~~Ip~~~--rivtIEdt~E~~~~-~~n~~~l~~r~~~~~~~~v~~~dll~aalR~rP 218 (312)
T COG0630 142 ARKSIIICGGTASGKTTLLNALLDFIPPEE--RIVTIEDTPELKLP-HENWVQLVTREGESGSSEVSLEDLLRAALRQRP 218 (312)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCC--CEEEECCCCEECCC-CCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 699499988888864959999986378522--18995255541478-876589983257776566669999999862399
Q ss_pred CEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 7999842320471358889999999985496899817868677
Q gi|254781047|r 141 RVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPEN 183 (404)
Q Consensus 141 ~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~d 183 (404)
+-|-++|..-... .-+|+++-.-...+.+.=.-.|.+
T Consensus 219 d~IivgEvrg~e~------~~~~~a~~tGh~~isT~ha~s~~~ 255 (312)
T COG0630 219 DYIIVGELRGREA------FVLFQAMQTGHGTISTIHADSPEL 255 (312)
T ss_pred CEEEEEEEECHHH------HHHHHHHHCCCCCEEEEECCCHHH
T ss_conf 8699963333779------999999865998216880689999
No 435
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=65.81 E-value=11 Score=18.16 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=32.7
Q ss_pred HHHHHHHCCCCEEEEEEEEE-CCCHHHHHHHHHHHHHHHC-CCEEEEECCC
Q ss_conf 99999961387999842320-4713588899999999854-9689981786
Q gi|254781047|r 131 LVASSIALESRVLCFDEFMI-TNIADAIILSRLFAALFSH-GCIIVMTSNF 179 (404)
Q Consensus 131 ~va~~l~~~~~lLCfDEF~V-~DiaDAmil~rl~~~lf~~-gv~lV~TSN~ 179 (404)
.+|..|+.+-+||.+||=-. -|+..+..+-+++..+.+. |+++|.+|..
T Consensus 150 ~iAraL~~~P~llllDEPTs~LD~~~~~~i~~~l~~l~~~~~~tii~itHd 200 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHD 200 (218)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 999998559999998188876899999999999999999629899998968
No 436
>PRK00300 gmk guanylate kinase; Provisional
Probab=65.35 E-value=8.1 Score=18.90 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 64998888877289999999985781
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
+=+.|-|+-|.|||-|++.+.+.-|.
T Consensus 8 ~livisGPSG~GK~tl~~~L~~~~p~ 33 (208)
T PRK00300 8 LLIVLSAPSGAGKSTLVRALLERDPN 33 (208)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 38999999988999999999972998
No 437
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=65.34 E-value=11 Score=18.10 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 499888887728999999998578
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
=+-|-|+=|+|||-|+.+..--.+
T Consensus 29 ~~~liG~nGsGKSTll~~i~Gl~~ 52 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999809999999963899
No 438
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.21 E-value=5.5 Score=19.99 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=14.8
Q ss_pred HCCEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 37889981898787246389998999999
Q gi|254781047|r 298 RFDVVIINDIPLLKEDRKDWIKRFIMLID 326 (404)
Q Consensus 298 ~f~ti~I~~VP~l~~~~~d~arRFI~LID 326 (404)
.|.||+|+.- |+..+.-.|+|-|.+--
T Consensus 1021 ~f~tVIlDEA--F~R~s~~~a~~~i~~f~ 1047 (1104)
T COG4913 1021 LFGTVILDEA--FSRSSHVVAGRIIAAFR 1047 (1104)
T ss_pred CEEEEEECHH--HCCCCHHHHHHHHHHHH
T ss_conf 2036761023--14478788999999999
No 439
>PRK10869 recombination and repair protein; Provisional
Probab=65.18 E-value=5.1 Score=20.19 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=12.6
Q ss_pred EEECCCCCCHHHHHHHHHHHC
Q ss_conf 988888772899999999857
Q gi|254781047|r 70 YLHGDVGQGKSMLMNLFFALV 90 (404)
Q Consensus 70 YL~G~VG~GKT~LMdlFy~~l 90 (404)
=|-|.-|.|||+|||..--.+
T Consensus 26 viTGETGAGKSill~al~lll 46 (553)
T PRK10869 26 VITGETGAGKSIAIDALGLCL 46 (553)
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 877899987999999999984
No 440
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=65.01 E-value=11 Score=18.06 Aligned_cols=52 Identities=17% Similarity=0.191 Sum_probs=37.2
Q ss_pred HHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHH-CCCEEEEECCCC
Q ss_conf 78999999613879998423-20471358889999999985-496899817868
Q gi|254781047|r 129 IPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFS-HGCIIVMTSNFI 180 (404)
Q Consensus 129 l~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~-~gv~lV~TSN~~ 180 (404)
--.+|..++.+-+||.+||= -=-|+..+..+-.++..|-+ .|+++|++|--.
T Consensus 160 Rv~IArAL~~~P~iLllDEPta~LDp~~~~~i~~~l~~l~~~~g~Til~vtHdl 213 (262)
T PRK09984 160 RVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV 213 (262)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf 999999997199999983886779999999999999999985497999988898
No 441
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=64.96 E-value=11 Score=18.06 Aligned_cols=52 Identities=19% Similarity=0.239 Sum_probs=39.6
Q ss_pred HHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHC-CCEEEEECCCCH
Q ss_conf 8999999613879998423-204713588899999999854-968998178686
Q gi|254781047|r 130 PLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSH-GCIIVMTSNFIP 181 (404)
Q Consensus 130 ~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~-gv~lV~TSN~~P 181 (404)
..+|..++.+-++|++||- -=-|+.....+..++..+-+. |.+++.||...-
T Consensus 140 v~ia~Al~~~P~lliLDEPt~gLDp~~~~~i~~~i~~l~~~~g~tiilssH~l~ 193 (220)
T cd03265 140 LEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME 193 (220)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 999999856999899808866889999999999999999838979999888889
No 442
>PRK08118 topology modulation protein; Reviewed
Probab=64.92 E-value=7.7 Score=19.02 Aligned_cols=26 Identities=35% Similarity=0.349 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 49988888772899999999857811
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIE 93 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~ 93 (404)
=|.|-|.+|.|||.|-.-.-+.+.++
T Consensus 3 rI~IiG~~GsGKSTlAr~L~~~~~ip 28 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIP 28 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 79998899987999999999988969
No 443
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=64.84 E-value=3.2 Score=21.47 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 97005899999999748877898999999999999999861354333225664310246666668864998888877289
Q gi|254781047|r 1 MSLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKS 80 (404)
Q Consensus 1 m~~~~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT 80 (404)
||++.+...|+-. .+..=-.|..++..|..- +... + -.......|.-|+|||
T Consensus 1 msy~vlark~RP~----~F~e~vGQ~~v~~~L~na---l~~~---------r------------l~haylf~G~rGvGKT 52 (704)
T PRK08691 1 MAYQVLARKWRPK----TFADLVGQEHVVKALQNA---LDEG---------R------------LHHAYLLTGTRGVGKT 52 (704)
T ss_pred CCCHHHHHHHCCC----CHHHHCCCHHHHHHHHHH---HHHC---------C------------CCCEEEEECCCCCCHH
T ss_conf 9428777651887----475641869999999999---9819---------9------------7523750278987888
Q ss_pred HHHHHHHHHCCCCHH------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH-----HHCCCCEE
Q ss_conf 999999985781114------------6888999999999999997131122466557807899999-----96138799
Q gi|254781047|r 81 MLMNLFFALVPIEKK------------CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASS-----IALESRVL 143 (404)
Q Consensus 81 ~LMdlFy~~l~~~~K------------~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~-----l~~~~~lL 143 (404)
-+--.|-.++.+... +.+.-..| -.+.+.....+ .+. |-+..+-+. ....++|.
T Consensus 53 t~Ari~Ak~lNC~~~~~~~pCg~C~~C~~i~~g~~-----~D~~EiDaAs~---~~v-dd~R~l~~~~~y~P~~~~yKVy 123 (704)
T PRK08691 53 TIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRY-----VDLLEIDAASN---TGI-DNIREVLENAQYAPTAGKYKVY 123 (704)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCC-----CCEEEEECCCC---CCH-HHHHHHHHHCCCCCCCCCEEEE
T ss_conf 99999999967999999997877776787855899-----87477424544---588-9999999853468867853599
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf 98423204713588899999999854968998178686775238740566898999998505089804
Q gi|254781047|r 144 CFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD 211 (404)
Q Consensus 144 CfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~ 211 (404)
-|||.|--.-.-.=-|=+.++.==.+-++|.+|.. |+.| -..|-.+|.-+++.
T Consensus 124 iiDEvhmLs~~afNAlLKtLEEPP~~v~FilaTTd--p~Kl-------------p~TIlSRC~~f~l~ 176 (704)
T PRK08691 124 IIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTD--PHKV-------------PVTVLSRCLQFVLR 176 (704)
T ss_pred EEECHHHCCHHHHHHHHHHHCCCCCCEEEEEECCC--HHHC-------------CHHHHHHHHHHCCC
T ss_conf 98315443899999999861479756089985488--4647-------------58999888771026
No 444
>PRK07594 type III secretion system ATPase; Validated
Probab=64.63 E-value=5 Score=20.23 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 86499888887728999999998578
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
-+=+-|.|+-|+|||.||.+.-....
T Consensus 155 GQR~gIfgg~GvGKTtLl~~i~~~~~ 180 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAPD 180 (433)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHCCC
T ss_conf 78742047899985589999984247
No 445
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=64.58 E-value=11 Score=18.01 Aligned_cols=56 Identities=21% Similarity=0.224 Sum_probs=47.3
Q ss_pred HHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 78999999613879998423-204713588899999999854968998178686775
Q gi|254781047|r 129 IPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404)
Q Consensus 129 l~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404)
.-.+|..++.+.++|.+||= ---|...+-.|-.++..|-++|+.+|..|.+.++-.
T Consensus 153 rv~ia~al~~~p~llilDEPTa~Ld~~~~~~l~~~l~~l~~~g~tii~isH~l~~v~ 209 (510)
T PRK09700 153 MLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIR 209 (510)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 999999998598849987885666867899999998888872871799952367788
No 446
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=64.42 E-value=3.6 Score=21.12 Aligned_cols=21 Identities=24% Similarity=0.624 Sum_probs=17.9
Q ss_pred ECCCCCCHHHHHHHHHHHCCC
Q ss_conf 888877289999999985781
Q gi|254781047|r 72 HGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 72 ~G~VG~GKT~LMdlFy~~l~~ 92 (404)
-|+.|.|||-+...+.+.++.
T Consensus 2 iGpaGSGKTT~~~~l~~~l~~ 22 (234)
T pfam03029 2 VGGAGSGKTTFVGALSEILPL 22 (234)
T ss_pred CCCCCCCHHHHHHHHHHHHHH
T ss_conf 898989889999999999997
No 447
>TIGR00101 ureG urease accessory protein UreG; InterPro: IPR004400 This is a GTP hydrolase for assembly of the nickel metallocentre of urease. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. They play a central role in nitrogen metabolism.; GO: 0005524 ATP binding, 0016151 nickel ion binding.
Probab=64.26 E-value=5.3 Score=20.08 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 998888877289999999985781
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
+=+-|+||.|||-|+..+...+..
T Consensus 4 iG~~GPvG~Gktal~e~l~~~~~~ 27 (199)
T TIGR00101 4 IGVAGPVGSGKTALIEALTRELAK 27 (199)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 665047776468999999998874
No 448
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=64.22 E-value=6 Score=19.72 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99888887728999999998578
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
.-|.|+-|.|||.|+|+..=++-
T Consensus 28 ~lI~G~nGsGKSSIldAI~~ALy 50 (908)
T COG0419 28 FLIVGPNGAGKSSILDAITFALY 50 (908)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 79989999978899999999982
No 449
>KOG1942 consensus
Probab=64.19 E-value=4.7 Score=20.42 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=21.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 688649988888772899999999857
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALV 90 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l 90 (404)
-+-|++.|-|++|+|||-|-=..-+-+
T Consensus 62 maGravLlaGppgtGKTAlAlaisqEL 88 (456)
T KOG1942 62 MAGRAVLLAGPPGTGKTALALAISQEL 88 (456)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 267279973699876568999999974
No 450
>KOG0056 consensus
Probab=64.08 E-value=11 Score=17.95 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=14.7
Q ss_pred HHHHHHCCEEEECCCCCHHHH
Q ss_conf 999985050898047311221
Q gi|254781047|r 198 IELLEKKLEIISLDSGQDYRR 218 (404)
Q Consensus 198 I~~lk~~~~V~~l~~~~DYR~ 218 (404)
.+++|+.-+|+++.+.-|++-
T Consensus 513 fdllkee~eVvd~P~a~pl~~ 533 (790)
T KOG0056 513 FDLLKEEPEVVDLPGAPPLKV 533 (790)
T ss_pred HHHHHCCCHHHCCCCCCCCCC
T ss_conf 998616751113899997330
No 451
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=63.81 E-value=12 Score=17.92 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=18.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHH-HHCC
Q ss_conf 8649988888772899999999-8578
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFF-ALVP 91 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy-~~l~ 91 (404)
..-+.|-|++|+|||.+---|. +.+.
T Consensus 32 g~~~li~G~~G~GKt~~~~~f~~~~~~ 58 (241)
T PRK06067 32 GSLILIEGENDTGKSVLSQQFVWGALN 58 (241)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 908999807998879999999999986
No 452
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=63.73 E-value=12 Score=17.91 Aligned_cols=192 Identities=17% Similarity=0.100 Sum_probs=92.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf 86499888887728999999998578111468889999999999999971311224665578078999999613879998
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCF 145 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCf 145 (404)
|+=+-+-|+-|+|||--. .|.=.||. .++ .+.-+++.
T Consensus 1 P~vi~lvGptGvGKTTTi----------aKLAa~~~------------~~~---------------------~~V~lit~ 37 (196)
T pfam00448 1 PNVILLVGLQGSGKTTTI----------AKLAAYLK------------KQG---------------------KKVLLVAA 37 (196)
T ss_pred CEEEEEECCCCCCHHHHH----------HHHHHHHH------------HCC---------------------CEEEEEEC
T ss_conf 969999899999889999----------99999999------------779---------------------92899975
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCEEEE-ECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHCCCCCC
Q ss_conf 423204713588899999999854968998-1786867752387405668989999985050898047311221123678
Q gi|254781047|r 146 DEFMITNIADAIILSRLFAALFSHGCIIVM-TSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSIL 224 (404)
Q Consensus 146 DEF~V~DiaDAmil~rl~~~lf~~gv~lV~-TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DYR~~~~~~~ 224 (404)
|-|.+-=+----..++. .|+.+.. .+...|.+.-+++++.- -.+.++++=+|.. +
T Consensus 38 Dt~R~gA~eQL~~ya~~------l~v~~~~~~~~~d~~~~~~~~l~~~--------~~~~~D~IlIDTa---------G- 93 (196)
T pfam00448 38 DTFRAAAIEQLKQLAER------LGVPVFGSGTGSDPAAVAFDAVEKA--------KAENYDVVLVDTA---------G- 93 (196)
T ss_pred CCCCHHHHHHHHHHHHH------CCCEEEECCCCCCHHHHHHHHHHHH--------HHCCCCEEEEECC---------C-
T ss_conf 87768899999999986------3981781487778789999999998--------8468999999899---------9-
Q ss_pred CEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCEEEE
Q ss_conf 30220353022689999999860444467763276368089961220211110199985210246899999853788998
Q gi|254781047|r 225 PIYMTPLNSYNRVLMDKLWAHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFDVVII 304 (404)
Q Consensus 225 ~~y~~p~~~~~~~~l~~~f~~l~~~~~~~~~~i~v~~gR~i~v~~~~~~va~f~F~eLC~~~lg~~DYi~Ia~~f~ti~I 304 (404)
..|.++.--.++.+++... ++. ..+++. .... +..|...+...|..+=+
T Consensus 94 ---r~~~d~~~~~el~~~~~~~----~~~-~~~LVl-------~a~~----------------~~~~~~~~~~f~~~~~~ 142 (196)
T pfam00448 94 ---RLQNDKNLMDELKKIKRVI----APD-EVLLVL-------DATT----------------GQNALNQAKAFNEAVGI 142 (196)
T ss_pred ---CCCCCHHHHHHHHHHHHHC----CCC-CEEEEE-------ECCC----------------CCCHHHHHHHHHHHCCC
T ss_conf ---8747677899999998522----873-028998-------5677----------------82137899987600477
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECC-CCHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 189878724638999899999998228982899807-8978801346765313489989887
Q gi|254781047|r 305 NDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSE-ENIEDLFPYKLRKGAFEIQRTVSRL 365 (404)
Q Consensus 305 ~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~-~~~~~L~~~~~~~~~F~f~Rt~SRL 365 (404)
+.+ =-...|+++++-.++.++...+.++.+.+. ..+++| +.|.-+|-++||
T Consensus 143 ~~~---I~TKlDet~~~G~~l~~~~~~~~Pi~~~t~Gq~v~Dl-------~~~~~~~~~~~l 194 (196)
T pfam00448 143 TGV---ILTKLDGDAKGGAALSIAAETGKPIKFIGVGEKIDDL-------EPFDPERFVSRL 194 (196)
T ss_pred CCE---EEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCHHHC-------CCCCHHHHHHHH
T ss_conf 626---8884057887529998999989697999679981206-------347999999985
No 453
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family; InterPro: IPR004346 This family includes the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration . Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro . Similar type IV transport systems are also found in other bacteria. This family includes proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding.
Probab=63.31 E-value=6.4 Score=19.54 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=46.0
Q ss_pred CCCEEEEEEE--EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCH-HHHHCCCCCHHHHHHHHHHHHHCCEEEECCCC--
Q ss_conf 3879998423--204713588899999999854968998178686-77523874056689899999850508980473--
Q gi|254781047|r 139 ESRVLCFDEF--MITNIADAIILSRLFAALFSHGCIIVMTSNFIP-ENLYKDEINRNVLVSFIELLEKKLEIISLDSG-- 213 (404)
Q Consensus 139 ~~~lLCfDEF--~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P-~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~-- 213 (404)
.--++|+||| -+.|..=+--++..+..+=++++++|.--+ .| +|+|+=+.-+. +|++.-..+-+-.+
T Consensus 754 r~~~~~~DEaw~~l~~p~~~~~i~~~l~t~RK~NG~~v~ATQ-~~Y~d~~~s~i~~~-------~~~~~~T~I~lPn~~a 825 (931)
T TIGR00929 754 RRFLIVIDEAWKLLGDPVFAAKIKDWLKTLRKANGIVVLATQ-SIYNDALESRIADT-------LIEQCATKIFLPNPKA 825 (931)
T ss_pred CCEEEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCEEEEECC-HHHHHHHCCCHHHH-------HHHHCCCEEECCCCCC
T ss_conf 867998513053326907899999998757660977986300-14777631542468-------8961583432488456
Q ss_pred --CHHHHC
Q ss_conf --112211
Q gi|254781047|r 214 --QDYRRK 219 (404)
Q Consensus 214 --~DYR~~ 219 (404)
.||+..
T Consensus 826 ~~~dy~~~ 833 (931)
T TIGR00929 826 DREDYAEG 833 (931)
T ss_pred CHHHHHHH
T ss_conf 85899985
No 454
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=63.25 E-value=8.7 Score=18.71 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=21.7
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 66668864998888877289999999985
Q gi|254781047|r 61 RKYCSMQGIYLHGDVGQGKSMLMNLFFAL 89 (404)
Q Consensus 61 ~~~~~~kGlYL~G~VG~GKT~LMdlFy~~ 89 (404)
++....+.+-+.|+.|.|||-.+.-+-.+
T Consensus 37 p~~~e~~H~lv~G~tGsGKT~~i~~li~~ 65 (410)
T cd01127 37 PKDAEEAHTMIIGTTGTGKTTQIRELLAS 65 (410)
T ss_pred CCCHHHCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 86520274799889999889999999999
No 455
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=63.23 E-value=12 Score=17.85 Aligned_cols=72 Identities=18% Similarity=0.229 Sum_probs=42.8
Q ss_pred HHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHH-HCCCEEEEECCC-----------------------CHHHH
Q ss_conf 8999999613879998423-2047135888999999998-549689981786-----------------------86775
Q gi|254781047|r 130 PLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALF-SHGCIIVMTSNF-----------------------IPENL 184 (404)
Q Consensus 130 ~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf-~~gv~lV~TSN~-----------------------~P~dL 184 (404)
-.+|..|+.+-+||.+||= ---|..-..-+..++..|. +.|+++|.++-- .|++|
T Consensus 158 VaiArAL~~~P~lLllDEPts~LD~~~r~~l~~~l~~l~~~~g~Tii~VTHD~~eA~~laDrI~Vm~~G~Ivq~GtP~Ei 237 (377)
T PRK11607 158 VALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237 (377)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCEEEEEECCEEEEEECHHHH
T ss_conf 99999874499789964875447999999999999999997399999999899999986999999989999999688999
Q ss_pred HCCCCCH--HHHHHHHHHH
Q ss_conf 2387405--6689899999
Q gi|254781047|r 185 YKDEINR--NVLVSFIELL 201 (404)
Q Consensus 185 Y~~GLqR--~~FlPfI~~l 201 (404)
|.++-++ ..|+-...+|
T Consensus 238 y~~P~~~fva~f~G~~N~l 256 (377)
T PRK11607 238 YEHPTTRYSAEFIGSVNVF 256 (377)
T ss_pred HHCCCCHHHHHHCCCCCEE
T ss_conf 8689985898727935057
No 456
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=63.16 E-value=6.1 Score=19.69 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 49988888772899999999
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFF 87 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy 87 (404)
=|-|-||=|+|||-|+.|.=
T Consensus 33 iViltGPSGSGKTTLLtLiG 52 (220)
T TIGR02982 33 IVILTGPSGSGKTTLLTLIG 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 79843788984688999887
No 457
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=63.08 E-value=4.8 Score=20.33 Aligned_cols=120 Identities=20% Similarity=0.271 Sum_probs=64.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCC----------------------HHHHHHHHHHHHHHHHHHHHH-HCCCCCCCC
Q ss_conf 649988888772899999999857811----------------------146888999999999999997-131122466
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIE----------------------KKCRLHFYEFMKDVHSRIIMY-RKKIEFGEI 123 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~----------------------~K~R~HFh~FM~~ih~~l~~~-~~~~~~~~~ 123 (404)
.-|=+-||-|||||-|-=..-.++.-+ ..+.+ +-+.+|.. |.+....+-
T Consensus 22 ~PvHl~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd~eL~~~DLvG~~~g~~~~kv--------~DqfihnV~K~~d~~~~~ 93 (265)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVVLINGDAELTTSDLVGSYAGYTRKKV--------VDQFIHNVVKLEDIVRQN 93 (265)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEEE--------EECCEEEEECCCCCCCCC
T ss_conf 866744788855689999999736896899865823265442315467522223--------201211134251220026
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCC-------------------EEEEECCCCHHHH
Q ss_conf 557807899999961387999842320471358889999999985496-------------------8998178686775
Q gi|254781047|r 124 LESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGC-------------------IIVMTSNFIPENL 184 (404)
Q Consensus 124 ~~~dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv-------------------~lV~TSN~~P~dL 184 (404)
=..+||... .++.-=|-.|||-=+=++-- ++|=+.|+.|| ..|+|||-.=
T Consensus 94 W~D~rLt~A----v~eG~TLVYdEF~RskP~~n----NVLLSvlEE~vL~LPg~~~~~~Yv~VhP~FR~IfTSNp~E--- 162 (265)
T TIGR02640 94 WVDNRLTLA----VREGFTLVYDEFTRSKPETN----NVLLSVLEEGVLELPGKRGESRYVDVHPEFRVIFTSNPVE--- 162 (265)
T ss_pred CCCCHHHHH----HHCCCEEEECCCCCCCCHHH----HHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEECCCCCC---
T ss_conf 678357899----75697276647578862045----6567555523215888787787225788702463148701---
Q ss_pred HCCCCCHHHHHHHHHHHHHCCEEEECC
Q ss_conf 238740566898999998505089804
Q gi|254781047|r 185 YKDEINRNVLVSFIELLEKKLEIISLD 211 (404)
Q Consensus 185 Y~~GLqR~~FlPfI~~lk~~~~V~~l~ 211 (404)
|.| .+-.+ ++|-.++--+.||
T Consensus 163 YAG-Vh~~Q-----DALlDRL~ti~~D 183 (265)
T TIGR02640 163 YAG-VHETQ-----DALLDRLVTISMD 183 (265)
T ss_pred CCC-CCCHH-----HHHHHHHCCCCCC
T ss_conf 057-67716-----6776644004578
No 458
>pfam11004 DUF2843 Protein of unknown function (DUF2843). This bacterial family of proteins has no known function.
Probab=63.01 E-value=7.8 Score=19.01 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 28999999998578111468889999999999999
Q gi|254781047|r 78 GKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRII 112 (404)
Q Consensus 78 GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~ 112 (404)
|++.|+. .+-+.+.+|-+|-++|+.+|+.|.
T Consensus 181 ~~a~ll~----~LgiTK~~RS~YDh~ML~LHD~mK 211 (281)
T pfam11004 181 LSAWLLH----ALGITKRPRSRYDHLMLQLHDLMK 211 (281)
T ss_pred HHHHHHH----HHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 5899999----848887878768899999988752
No 459
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=63.00 E-value=12 Score=17.83 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=45.2
Q ss_pred HHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 8999999613879998423-20471358889999999985496899817868677
Q gi|254781047|r 130 PLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPEN 183 (404)
Q Consensus 130 ~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~d 183 (404)
-.+|..++.+-++|.+||= ---|+..+.-+-+++..|-++|+.+|..|.+..+-
T Consensus 143 v~ia~al~~~p~ililDEPt~~LD~~~~~~l~~~l~~l~~~g~til~itH~l~~v 197 (491)
T PRK10982 143 IEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEI 197 (491)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
T ss_conf 9999998539988981587345587888999888888774285367862436744
No 460
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=63.00 E-value=5.4 Score=19.99 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf 4998888877289999999985781114
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKK 95 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K 95 (404)
-+=+=|.+|.|||.|+.=.-+.+..+.|
T Consensus 36 ~lNfmsspGSGKT~LiEk~~~~~~~~~K 63 (225)
T TIGR00073 36 VLNFMSSPGSGKTTLIEKLIERLDDEVK 63 (225)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 9980258861158999999998457897
No 461
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=62.94 E-value=3 Score=21.64 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99888887728999999998578
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
+=|+||.|+|||.||.-.-..+.
T Consensus 150 iGLFGGAGVGKTVl~~ELI~Nia 172 (468)
T COG0055 150 IGLFGGAGVGKTVLIQELINNIA 172 (468)
T ss_pred EEEECCCCCCCEEEHHHHHHHHH
T ss_conf 44423677562010999999999
No 462
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=62.88 E-value=12 Score=17.81 Aligned_cols=97 Identities=18% Similarity=0.315 Sum_probs=60.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH------HH-CCCCH--HHHHH-H-----------------HHHHHHHHHHHHHHHCC
Q ss_conf 88649988888772899999999------85-78111--46888-9-----------------99999999999997131
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFF------AL-VPIEK--KCRLH-F-----------------YEFMKDVHSRIIMYRKK 117 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy------~~-l~~~~--K~R~H-F-----------------h~FM~~ih~~l~~~~~~ 117 (404)
..+.+-|.|+=..|||.+|...- +. ++++. +..+- | -.||.|+.+
T Consensus 27 ~~~~~iiTGpN~sGKSt~lk~i~l~~iLAq~G~~vpa~~~~~~~~~d~i~~~i~~~d~~~~~~S~F~~E~~~-------- 98 (200)
T cd03280 27 NKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSHMKN-------- 98 (200)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCEECCCCCEEEEEECCCCCHHHHHHHHHHHHHH--------
T ss_conf 933999988987750999999999999999777800110047266567888846733666778799999999--------
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHH-HHHHHHHHCCCEEEEECCCCH
Q ss_conf 1224665578078999999613879998423-204713588899-999999854968998178686
Q gi|254781047|r 118 IEFGEILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILS-RLFAALFSHGCIIVMTSNFIP 181 (404)
Q Consensus 118 ~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~-rl~~~lf~~gv~lV~TSN~~P 181 (404)
+..+.+ .+.+-.++.+||+ .=|+..|++-+. .+++.|.+++...+.|+-.+.
T Consensus 99 -----------~~~il~-~~~~~sLvliDE~~~gTn~~eg~~~a~a~l~~l~~~~~~~i~tTH~~e 152 (200)
T cd03280 99 -----------IARILQ-HADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGE 152 (200)
T ss_pred -----------HHHHHH-HCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf -----------999998-588888797556668988789999999999999857997999897178
No 463
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=62.79 E-value=6.6 Score=19.46 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 4998888877289999999985781
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
=.-|.|+-|.|||-|+|+..=++-.
T Consensus 30 lflI~G~nGsGKSTIlDAI~~aLYG 54 (213)
T cd03279 30 LFLICGPTGAGKSTILDAITYALYG 54 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 8999889999788999999999838
No 464
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=62.69 E-value=5 Score=20.25 Aligned_cols=77 Identities=23% Similarity=0.271 Sum_probs=42.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 49988888772899999999857811146-88899999999999999713112246655780789999996138799984
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKC-RLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFD 146 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~-R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfD 146 (404)
-+-.-|.||||||-|....+..-...+|- -+-| +|
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQAve~--------------------------------------------~d 38 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAVEF--------------------------------------------ND 38 (148)
T ss_pred EEEEECCCCCCCHHHHHHHHCCHHHHCCCCEEEC--------------------------------------------CC
T ss_conf 0687514565731678886160332100001330--------------------------------------------47
Q ss_pred EEEECCCH----HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCC
Q ss_conf 23204713----5888999999998549689981786867752387
Q gi|254781047|r 147 EFMITNIA----DAIILSRLFAALFSHGCIIVMTSNFIPENLYKDE 188 (404)
Q Consensus 147 EF~V~Dia----DAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~G 188 (404)
+.-+.-++ .-+.-+.|+..+-+-.+++..-|-..|+-.++-|
T Consensus 39 ~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~ 84 (148)
T COG4917 39 KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPG 84 (148)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC
T ss_conf 5565880666524678999988761133255430026844448842
No 465
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=62.58 E-value=8.1 Score=18.90 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 4998888877289999999985
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFAL 89 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~ 89 (404)
.+++-|++|.|||-|+-.|-+.
T Consensus 2 k~v~iGd~gvGks~l~~rf~~~ 23 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQF 23 (124)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998899999998527
No 466
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=62.55 E-value=7.6 Score=19.06 Aligned_cols=20 Identities=35% Similarity=0.700 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99888887728999999998
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFA 88 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~ 88 (404)
+++-|+.|+|||-|+.-|.+
T Consensus 7 ~~VlG~~~VGKTsLi~rf~~ 26 (169)
T cd01892 7 CFVLGAKGSGKSALLRAFLG 26 (169)
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999889999999964
No 467
>KOG0745 consensus
Probab=62.50 E-value=8.9 Score=18.64 Aligned_cols=28 Identities=21% Similarity=0.459 Sum_probs=24.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 8649988888772899999999857811
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIE 93 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~ 93 (404)
.-.+.|-|+-|.|||+|-..+-.++.++
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVP 253 (564)
T KOG0745 226 KSNVLLLGPTGSGKTLLAQTLARVLDVP 253 (564)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 3547997788876438999999970887
No 468
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=62.35 E-value=6.9 Score=19.35 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=15.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99888887728999999998578
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
.-|-|+-|.|||.||.++-....
T Consensus 459 tlIiGpTGsGKTvll~fl~aq~~ 481 (818)
T PRK13830 459 TLIFGPTGSGKSTLLALIAAQFR 481 (818)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 58989999988999999999986
No 469
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=62.27 E-value=9.4 Score=18.48 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 998888877289999999985781
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
+.|-|+-|.|||-|++.+.+..|.
T Consensus 2 ivi~GPSG~GK~tl~~~L~~~~~~ 25 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 999999988999999999851987
No 470
>PRK09694 hypothetical protein; Provisional
Probab=62.16 E-value=12 Score=17.73 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=43.5
Q ss_pred HHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 9613879998423204713588899999999854968998178686775
Q gi|254781047|r 136 IALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404)
Q Consensus 136 l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404)
+.-..+++-|||.|--|.=-.-+|.++++.+-..|+.+|.-|-+-|..+
T Consensus 438 ~gLa~kvvIiDEVHAYD~Ym~~lL~~lL~wl~~~g~~viLLSATLP~~~ 486 (878)
T PRK09694 438 LGIGRSVLIVDEVHAYDAYMNGLLEAVLKAQAQVGGSVILLSATLPMTQ 486 (878)
T ss_pred HHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
T ss_conf 9862874897253334588999999999999983998899927898999
No 471
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=62.13 E-value=7.2 Score=19.24 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=14.8
Q ss_pred EEECCCCCCHHHHHHHHHHHC
Q ss_conf 988888772899999999857
Q gi|254781047|r 70 YLHGDVGQGKSMLMNLFFALV 90 (404)
Q Consensus 70 YL~G~VG~GKT~LMdlFy~~l 90 (404)
=|-|++|.|||-+...+.+.+
T Consensus 3 GIaG~sgSGKST~a~~l~~~l 23 (220)
T cd02025 3 GIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 978899877999999999986
No 472
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=62.08 E-value=10 Score=18.33 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 49988888772899999999857
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALV 90 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l 90 (404)
=+=|-|++|.|||-|.+.+-..+
T Consensus 31 ~iGiTG~PGaGKStli~~l~~~~ 53 (267)
T pfam03308 31 RVGITGVPGAGKSTLIEALGMEL 53 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99876899887999999999999
No 473
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=62.03 E-value=6.9 Score=19.35 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 864998888877289999999985781
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
-.-+-+-|+-|||||-|+++.--..+.
T Consensus 31 ge~vv~lGpSGcGKTTLLnl~AGf~~P 57 (259)
T COG4525 31 GELVVVLGPSGCGKTTLLNLIAGFVTP 57 (259)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 978999768886578899998627585
No 474
>pfam06048 DUF927 Domain of unknown function (DUF927). Family of bacterial proteins of unknown function.
Probab=61.96 E-value=12 Score=17.71 Aligned_cols=19 Identities=32% Similarity=0.172 Sum_probs=10.9
Q ss_pred HHHHHHHHHCCCEEEEECCCC
Q ss_conf 999999985496899817868
Q gi|254781047|r 160 SRLFAALFSHGCIIVMTSNFI 180 (404)
Q Consensus 160 ~rl~~~lf~~gv~lV~TSN~~ 180 (404)
++++..|.++|+.+ ||+..
T Consensus 72 ~~~~~~L~~~Gl~i--~s~~~ 90 (284)
T pfam06048 72 SELRKELADLGLTI--NSPNA 90 (284)
T ss_pred HHHHHHHHHCCCCC--CCHHH
T ss_conf 99999999769776--86068
No 475
>PRK05480 uridine kinase; Provisional
Probab=61.81 E-value=8.2 Score=18.86 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=19.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 86499888887728999999998578
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
|-=|=|-|+.|.|||.+...+.+.++
T Consensus 6 P~iIgIaG~SgSGKTT~a~~L~~~l~ 31 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 88999989997789999999999808
No 476
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=61.76 E-value=13 Score=17.69 Aligned_cols=49 Identities=16% Similarity=0.057 Sum_probs=24.4
Q ss_pred CCCCEEEEEEEEEC-----C--CHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCC
Q ss_conf 13879998423204-----7--135888999999998549689981786867752387
Q gi|254781047|r 138 LESRVLCFDEFMIT-----N--IADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDE 188 (404)
Q Consensus 138 ~~~~lLCfDEF~V~-----D--iaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~G 188 (404)
++--||-+||=|=. | -.+|-=++-+... ..++.+|..|-+|-=+=|.|.
T Consensus 312 ~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~--~~~~pvvLgSATPSLES~~~~ 367 (730)
T COG1198 312 KNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAK--KENAPVVLGSATPSLESYANA 367 (730)
T ss_pred HHCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH--HCCCCEEEECCCCCHHHHHHH
T ss_conf 12576997024564324777777678999999988--609988982688778999866
No 477
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=61.68 E-value=8.7 Score=18.69 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=21.9
Q ss_pred CHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 225664310246666668864998888877289999999
Q gi|254781047|r 48 GIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLF 86 (404)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlF 86 (404)
++++++|.++..+ |-+-|.-|.|||-|+.-+
T Consensus 3 ~~~~~~f~kk~~k--------ililG~~~~GKTsil~~l 33 (175)
T smart00177 3 KLFSKLFGNKEMR--------ILMVGLDAAGKTTILYKL 33 (175)
T ss_pred HHHHHHCCCCEEE--------EEEECCCCCCHHHHHHHH
T ss_conf 5767663788899--------999988999989999999
No 478
>PRK08149 ATP synthase SpaL; Validated
Probab=61.64 E-value=7.2 Score=19.23 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 6499888887728999999998578
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
+=+-|.|+-|+|||.||.+.-....
T Consensus 151 QR~gIf~gsGvGKs~Ll~~i~~~~~ 175 (427)
T PRK08149 151 QRMGIFASAGCGKTMLMNMLIEHTE 175 (427)
T ss_pred CEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 5400027899867799998886358
No 479
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=61.63 E-value=6.6 Score=19.45 Aligned_cols=40 Identities=30% Similarity=0.365 Sum_probs=26.9
Q ss_pred CCCEEEEEEEEECCCHHHHHHHHHHHHHHHC-CCEEEEECCCCH
Q ss_conf 3879998423204713588899999999854-968998178686
Q gi|254781047|r 139 ESRVLCFDEFMITNIADAIILSRLFAALFSH-GCIIVMTSNFIP 181 (404)
Q Consensus 139 ~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~-gv~lV~TSN~~P 181 (404)
.++||-+||.--- |.-+|.+|++++-.. .++||--.|.-|
T Consensus 260 ~~DvlIVDEASMV---Dl~Lm~~LL~Alp~~aRLILvGD~dQLp 300 (607)
T PRK10875 260 HLDVLVVDEASMI---DLPMMSRLIDALPDHARVIFLGDRDQLA 300 (607)
T ss_pred CCCEEEEECCHHH---HHHHHHHHHHHCCCCCEEEEECCHHHCC
T ss_conf 8898999073366---5999999998289998899965623247
No 480
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=61.57 E-value=13 Score=17.67 Aligned_cols=67 Identities=19% Similarity=0.301 Sum_probs=50.1
Q ss_pred HHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCE-
Q ss_conf 78999999613879998423-2047135888999999998549689981786867752387405668989999985050-
Q gi|254781047|r 129 IPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLE- 206 (404)
Q Consensus 129 l~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~- 206 (404)
--.+|..++.+.++|.+||= -=-|+....-+-.++..+-++|.++|++|-. ++...+.|+
T Consensus 146 Rv~iAraL~~~p~lllLDEPtsgLD~~~~~~i~~li~~l~~~g~tvi~vtHd------------------l~~~~~~aDr 207 (255)
T PRK11231 146 RAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHD------------------LNQASRYCDH 207 (255)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC------------------HHHHHHHCCE
T ss_conf 9999999953999799838864489999999999999998689999999378------------------8999996999
Q ss_pred EEECCCC
Q ss_conf 8980473
Q gi|254781047|r 207 IISLDSG 213 (404)
Q Consensus 207 V~~l~~~ 213 (404)
|+-|+.|
T Consensus 208 iivl~~G 214 (255)
T PRK11231 208 LVVMANG 214 (255)
T ss_pred EEEEECC
T ss_conf 9999899
No 481
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=61.41 E-value=6.4 Score=19.56 Aligned_cols=99 Identities=19% Similarity=0.181 Sum_probs=54.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC----CCC-CCCH-----HHHHHHHHH
Q ss_conf 499888887728999999998578111468889999999999999971311224----665-5780-----789999996
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFG----EIL-ESDP-----IPLVASSIA 137 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~----~~~-~~dp-----l~~va~~l~ 137 (404)
-+.|-|++|++||-|+......+|-.- ...|+.++. ... .+|| ......-..
T Consensus 495 niLl~GDPgtaKSQlL~yv~~iaPRgv------------------ytsGkgsSavGLTA~v~~~d~~tg~~~LEaGALVL 556 (916)
T PTZ00111 495 NVLLCGDPGTAKSQLLHYTHLLSPRSI------------------YTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVL 556 (916)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEE------------------EECCCCCCCCCCEEEEEECCCCCCCEEEECCCEEE
T ss_conf 599957996018999999997287426------------------74598654226468998326887868985480897
Q ss_pred CCCCEEEEEEEEECCCHHHHHHHHHHHH--HHHCCCEEEEECCCCHHHH
Q ss_conf 1387999842320471358889999999--9854968998178686775
Q gi|254781047|r 138 LESRVLCFDEFMITNIADAIILSRLFAA--LFSHGCIIVMTSNFIPENL 184 (404)
Q Consensus 138 ~~~~lLCfDEF~V~DiaDAmil~rl~~~--lf~~gv~lV~TSN~~P~dL 184 (404)
.+.-+.|+|||.=-+-.|--.|-..++. +.--+.-+++|=|.--.-|
T Consensus 557 aD~GvccIDEFDKM~~~~rs~lhEaMEQQtvSIAKAGI~~tLnARtSvL 605 (916)
T PTZ00111 557 ANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAIL 605 (916)
T ss_pred CCCCEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHH
T ss_conf 2798799622203685678899998866312353235045412034565
No 482
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=61.37 E-value=10 Score=18.31 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9988888772899999999857
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALV 90 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l 90 (404)
|-+=|..|+|||-++..+-+.+
T Consensus 2 I~iEG~iGsGKSTl~~~L~~~~ 23 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998888888999999999966
No 483
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=60.90 E-value=8.7 Score=18.71 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99888887728999999998578
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
|=|-|+.|.|||.+.+...+.++
T Consensus 2 IgI~G~sgsGKTT~a~~L~~~l~ 24 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889998859999999999809
No 484
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=60.74 E-value=6.8 Score=19.36 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=19.4
Q ss_pred EEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 98888877289999999985781
Q gi|254781047|r 70 YLHGDVGQGKSMLMNLFFALVPI 92 (404)
Q Consensus 70 YL~G~VG~GKT~LMdlFy~~l~~ 92 (404)
-|-|.-|-|||+|+|.+--.+-.
T Consensus 25 VlTGETGAGKSIlidAL~lllG~ 47 (276)
T cd03241 25 VLTGETGAGKSILLDALSLLLGG 47 (276)
T ss_pred EEECCCCCCHHHHHHHHHHHHCC
T ss_conf 88789988899999999996289
No 485
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=60.53 E-value=6.5 Score=19.49 Aligned_cols=111 Identities=19% Similarity=0.183 Sum_probs=58.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC----------------CHHHHH--HHHH--------------HHH--------HH
Q ss_conf 4998888877289999999985781----------------114688--8999--------------999--------99
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI----------------EKKCRL--HFYE--------------FMK--------DV 107 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~----------------~~K~R~--HFh~--------------FM~--------~i 107 (404)
=+=|-|+-|||||-|+.+..--.+. +.+|.+ =|.+ |-+ ++
T Consensus 32 ~~~llGpSG~GKtTlLr~iaGl~~p~~G~I~~~g~~v~~~~p~~R~ig~VfQ~~aLfPh~tV~eNiafgl~~~~~~~~e~ 111 (353)
T TIGR03265 32 FVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEV 111 (353)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHH
T ss_conf 99999999535999999997699998739999999999999525885999788854678929999988998769999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCH---------HHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHH-CCCEEEEE
Q ss_conf 999999713112246655780---------78999999613879998423-20471358889999999985-49689981
Q gi|254781047|r 108 HSRIIMYRKKIEFGEILESDP---------IPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFS-HGCIIVMT 176 (404)
Q Consensus 108 h~~l~~~~~~~~~~~~~~~dp---------l~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~-~gv~lV~T 176 (404)
.++..++-...+........| --.+|..|+.+-++|.+||= ---|..----|...+..+.+ .|+++|..
T Consensus 112 ~~rv~~~l~~~~l~~~~~r~p~~LSGGq~QRVAlARAL~~~P~vlLlDEPlsaLD~~lr~~l~~~l~~l~~~~~~T~i~V 191 (353)
T TIGR03265 112 AERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMV 191 (353)
T ss_pred HHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 99999999876995576569646898887999999998549989999087653599999999999999999869989999
Q ss_pred CC
Q ss_conf 78
Q gi|254781047|r 177 SN 178 (404)
Q Consensus 177 SN 178 (404)
+-
T Consensus 192 TH 193 (353)
T TIGR03265 192 TH 193 (353)
T ss_pred CC
T ss_conf 98
No 486
>COG3911 Predicted ATPase [General function prediction only]
Probab=60.29 E-value=6.8 Score=19.37 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 4998888877289999999985
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFAL 89 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~ 89 (404)
=+-|-|++|-|||-|+..+-..
T Consensus 11 ~fIltGgpGaGKTtLL~aLa~~ 32 (183)
T COG3911 11 RFILTGGPGAGKTTLLAALARA 32 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8998379997689999999975
No 487
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=60.24 E-value=13 Score=17.52 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=28.2
Q ss_pred HHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 999999613879998423-2047135888999999998549689981786
Q gi|254781047|r 131 LVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNF 179 (404)
Q Consensus 131 ~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~ 179 (404)
.+|..++.+-++|.+||= ---|+..+.-+-+++..|.++|.++|..|-.
T Consensus 146 aiA~aLa~~P~iLiLDEPTs~LD~~~~~~i~~~l~~L~~~g~TvI~itHd 195 (274)
T PRK13644 146 ALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHN 195 (274)
T ss_pred HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 99999982999999979866789999999999999998689999998337
No 488
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=60.14 E-value=12 Score=17.72 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=18.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 886499888887728999999998
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFA 88 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~ 88 (404)
.+| |-+=|..|.|||-|+.-+..
T Consensus 14 ~~K-i~ilG~~~sGKTsll~~l~~ 36 (173)
T cd04155 14 EPR-ILILGLDNAGKTTILKQLAS 36 (173)
T ss_pred CCE-EEEECCCCCCHHHHHHHHHC
T ss_conf 758-99997999988999999856
No 489
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=60.11 E-value=13 Score=17.51 Aligned_cols=42 Identities=21% Similarity=0.138 Sum_probs=27.2
Q ss_pred CCHHHHHHHHCCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 0199985210246899999853788998189878724638999899
Q gi|254781047|r 277 FSFFDLCDRPLSANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFI 322 (404)
Q Consensus 277 f~F~eLC~~~lg~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI 322 (404)
++=+.|=...+.+..+..|+...+-+...+||. +..+|++++
T Consensus 226 ~~~~~l~~~gl~~P~~~~~~~~l~~~~~~~~p~----~~~~~~~~~ 267 (273)
T PRK13647 226 TDRQLLEEAGLKAPLLVQIFEDFEELYKLGIPT----NLKDARQII 267 (273)
T ss_pred CCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC----CHHHHHHHH
T ss_conf 999999986999987999999988861589998----799999999
No 490
>COG5440 Uncharacterized conserved protein [Function unknown]
Probab=60.07 E-value=13 Score=17.50 Aligned_cols=44 Identities=20% Similarity=0.207 Sum_probs=30.9
Q ss_pred HHHHHHHCCCEEEEECCCC-------HHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9999985496899817868-------6775238740566898999998505
Q gi|254781047|r 162 LFAALFSHGCIIVMTSNFI-------PENLYKDEINRNVLVSFIELLEKKL 205 (404)
Q Consensus 162 l~~~lf~~gv~lV~TSN~~-------P~dLY~~GLqR~~FlPfI~~lk~~~ 205 (404)
+=..|...|+-.+++-|-. -.+||-|||.++.|+..|..+.+..
T Consensus 87 l~~dLlr~~v~F~~~Pn~~~pqsiqvsrelf~DGLtkn~~idai~~V~n~~ 137 (161)
T COG5440 87 LRRDLLRLGVDFQALPNPRDPQSIQVSRELFFDGLTKNELIDAIKNVVNAK 137 (161)
T ss_pred HHHHHHHCCCCEEECCCCCCCCEEEEEHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 999999638735954996677436744556654411889999999998628
No 491
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=59.95 E-value=8.3 Score=18.82 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=13.5
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 998888877289999999
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLF 86 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlF 86 (404)
+++-||+..|||-.---.
T Consensus 2 iLVtGG~rSGKS~~AE~l 19 (169)
T cd00544 2 ILVTGGARSGKSRFAERL 19 (169)
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 899778663689999999
No 492
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=59.74 E-value=14 Score=17.47 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 49988888772899999999857
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALV 90 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l 90 (404)
=+=|-|+=|+|||-|+.+..-..
T Consensus 33 i~~iiG~sGsGKSTLl~~i~gl~ 55 (257)
T PRK10619 33 VISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999899981999999996599
No 493
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=59.69 E-value=8.6 Score=18.74 Aligned_cols=188 Identities=19% Similarity=0.193 Sum_probs=96.7
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHCCCCCCC----------------------
Q ss_conf 999999974887789899999999999999986135433---3225664310246666----------------------
Q gi|254781047|r 8 SRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQE---QGIFSWLWNLRGIKRK---------------------- 62 (404)
Q Consensus 8 ~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~---~~~~~~~~~~~~~~~~---------------------- 62 (404)
..|.+.+++..+ |+.....+..+|++|.. +...++-. .+...|+...-+.+..
T Consensus 253 ~~~~~kie~~~~-p~evkek~~~El~kL~~-m~~~SaE~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLek 330 (782)
T COG0466 253 EELREKIEKLKL-PKEAKEKAEKELKKLET-MSPMSAEATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKILDKDHYGLEK 330 (782)
T ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHH
T ss_conf 999999751699-98999999999999850-7999916889989999998288765542132299999874435567116
Q ss_pred --------------CCCCC--EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf --------------66886--49988888772899999999857811146888999999999999997131122466557
Q gi|254781047|r 63 --------------YCSMQ--GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILES 126 (404)
Q Consensus 63 --------------~~~~k--GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~ 126 (404)
....+ =+-|.|++|+|||=|-...-+++.-+- -|+-- --++++ .+.||-++.=-+.-+
T Consensus 331 VKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkf-vR~sL----GGvrDE-AEIRGHRRTYIGaMP 404 (782)
T COG0466 331 VKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKF-VRISL----GGVRDE-AEIRGHRRTYIGAMP 404 (782)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCE-EEEEC----CCCCCH-HHHCCCCCCCCCCCC
T ss_conf 899999999999861467885799978998870118999999958977-99954----765427-775355312335687
Q ss_pred CHHHHHHHHHHCCCCEEEEEEE------EECCCHHHHHH-------HHHHHHHHH-----CCCEEEEECCCCHHHHHCCC
Q ss_conf 8078999999613879998423------20471358889-------999999985-----49689981786867752387
Q gi|254781047|r 127 DPIPLVASSIALESRVLCFDEF------MITNIADAIIL-------SRLFAALFS-----HGCIIVMTSNFIPENLYKDE 188 (404)
Q Consensus 127 dpl~~va~~l~~~~~lLCfDEF------~V~DiaDAmil-------~rl~~~lf~-----~gv~lV~TSN~~P~dLY~~G 188 (404)
--|-+--++--..-.|+.+||. +=-|+|.||+= ..+..++.+ ..|..|+|+|..- .
T Consensus 405 GrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~------t 478 (782)
T COG0466 405 GKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLD------T 478 (782)
T ss_pred HHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCHHHHHHHHCCHHHCCCHHHCCCCCCCCHHHEEEEEECCCCC------C
T ss_conf 2899999986776874786403331677778868888862697656761222016766443258886037513------2
Q ss_pred CCHHHHHHHHHHHHHCCEEEECCCCCHHH
Q ss_conf 40566898999998505089804731122
Q gi|254781047|r 189 INRNVLVSFIELLEKKLEIISLDSGQDYR 217 (404)
Q Consensus 189 LqR~~FlPfI~~lk~~~~V~~l~~~~DYR 217 (404)
+-+ -|-.+|+|++|.|-++--
T Consensus 479 IP~--------PLlDRMEiI~lsgYt~~E 499 (782)
T COG0466 479 IPA--------PLLDRMEVIRLSGYTEDE 499 (782)
T ss_pred CCH--------HHHCCEEEEEECCCCHHH
T ss_conf 986--------784303056426888699
No 494
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=59.66 E-value=10 Score=18.27 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=19.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 86499888887728999999998578
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVP 91 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404)
+.=|-|-|++|.|||-|-..+.+.+.
T Consensus 34 R~lIgIaG~pGSGKSTlA~~l~~~L~ 59 (230)
T PRK09270 34 RTVVGIAGPPGAGKSTLAETLWEALS 59 (230)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 18999989998899999999999986
No 495
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=59.50 E-value=9.9 Score=18.36 Aligned_cols=21 Identities=43% Similarity=0.490 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 998888877289999999985
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFAL 89 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~ 89 (404)
|-+=|..|+|||-|+.-|...
T Consensus 2 i~vvG~~~vGKTsli~r~~~~ 22 (162)
T pfam00071 2 LVLVGDGGVGKSSLLIRFTQN 22 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 899997997799999999619
No 496
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=59.49 E-value=6 Score=19.71 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=14.7
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9988888772899999999
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFF 87 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy 87 (404)
.=|+|+.|+|||.|.=.+-
T Consensus 22 tEi~G~~gsGKT~l~lqla 40 (226)
T cd01393 22 TEIFGEFGSGKTQLCLQLA 40 (226)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999998999999999
No 497
>CHL00181 cbbX CbbX; Provisional
Probab=59.24 E-value=13 Score=17.61 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=18.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 8864998888877289999999985
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFAL 89 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~ 89 (404)
+..-+-.-|++|+|||.+--++-+-
T Consensus 58 ~s~h~vF~GnPGTGKTTVARl~a~i 82 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 7653888789986799999999999
No 498
>KOG0394 consensus
Probab=58.83 E-value=11 Score=18.13 Aligned_cols=22 Identities=36% Similarity=0.673 Sum_probs=18.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 8649988888772899999999
Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFF 87 (404)
Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy 87 (404)
+--+-|-|+-|+|||=||+-|.
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv 30 (210)
T KOG0394 9 LLKVIILGDSGVGKTSLMNQYV 30 (210)
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 3599993799844789999998
No 499
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=58.70 E-value=14 Score=17.35 Aligned_cols=121 Identities=17% Similarity=0.204 Sum_probs=71.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH--HH-HHHHHHHHHHHHCCCCCCCCCC-CCHHHHHHHHHHCC
Q ss_conf 68864998888877289999999985781114688899--99-9999999999713112246655-78078999999613
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY--EF-MKDVHSRIIMYRKKIEFGEILE-SDPIPLVASSIALE 139 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh--~F-M~~ih~~l~~~~~~~~~~~~~~-~dpl~~va~~l~~~ 139 (404)
.++--|-|.|.-|+||.++-....+..|-+.+.=+--| .. =.-+-++|+-+..-.-.+...+ +-.+-. +| +
T Consensus 266 ~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE----~A-~ 340 (560)
T COG3829 266 KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLFE----LA-N 340 (560)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE----EC-C
T ss_conf 899828995378866899999987448434798078764338888888887276776424644579976054----41-6
Q ss_pred CCEEEEEEEEECCCHHHHHHHHHHHHHHHC-------------CCEEEEECCCCHHHHHCCCCCHH
Q ss_conf 879998423204713588899999999854-------------96899817868677523874056
Q gi|254781047|r 140 SRVLCFDEFMITNIADAIILSRLFAALFSH-------------GCIIVMTSNFIPENLYKDEINRN 192 (404)
Q Consensus 140 ~~lLCfDEF~V~DiaDAmil~rl~~~lf~~-------------gv~lV~TSN~~P~dLY~~GLqR~ 192 (404)
.--||+||. .+.- -++=++|+..|-++ .|.+|++.|+.|.++-.+|-.|+
T Consensus 341 gGTLFLDEI--gemp-l~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~i~~G~FRe 403 (560)
T COG3829 341 GGTLFLDEI--GEMP-LPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMIAEGTFRE 403 (560)
T ss_pred CCEEEEHHH--CCCC-HHHHHHHHHHHHHCEEEECCCCCCEEEEEEEEECCCCCHHHHHHCCCCHH
T ss_conf 983771232--0399-89999999987535378537887535678999425758999986396165
No 500
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=58.69 E-value=9.5 Score=18.46 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9988888772899999999857
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALV 90 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l 90 (404)
.-|-|+-|.|||.||.+.-...
T Consensus 444 tlI~GpTGsGKTvll~~l~~q~ 465 (815)
T PRK13873 444 TLVVGPTGAGKSVLLALMALQF 465 (815)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 3897889998999999999998
Done!