HHsearch alignment for GI: 254781047 and conserved domain: pfam00910
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=97.34 E-value=0.00025 Score=47.55 Aligned_cols=85 Identities=29% Similarity=0.347 Sum_probs=51.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf 9988888772899999999857811----146888999999999999997131122466557807899999961387999
Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIE----KKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC 144 (404)
Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~----~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC 144 (404)
T Consensus 1 i~l~G~~G~GKS~~a~~la~~~~~~~~~~~~~~~-------------------------Y~~~~~~~~wdgY~-gq~vvi 54 (105)
T pfam00910 1 IWLYGPPGCGKSTLAKYLARALLDHLGLPKKDSV-------------------------YSRNPDDDFWDGYT-GQPVVI 54 (105)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCE-------------------------EECCCCCCCCCCCC-CCEEEE
T ss_conf 9897999898899999999999998377878977-------------------------96788776567889-985799
Q ss_pred EEEE-EECCCH-HHHHHHHHHH---------HHHHCC-----CEEEEECCC
Q ss_conf 8423-204713-5888999999---------998549-----689981786
Q gi|254781047|r 145 FDEF-MITNIA-DAIILSRLFA---------ALFSHG-----CIIVMTSNF 179 (404)
Q Consensus 145 fDEF-~V~Dia-DAmil~rl~~---------~lf~~g-----v~lV~TSN~ 179 (404)
T Consensus 55 ~DD~~~~~~~~~~~~~~~~lvs~~p~~~~ma~le~Kg~~f~s~~vi~tsN~ 105 (105)
T pfam00910 55 IDDFGQNPDGPSDEAELIRLVSSTPYPPPMAALEEKGTPFTSKFVIVTSNF 105 (105)
T ss_pred EECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEECCC
T ss_conf 965777888628899999875699838886676148884468889994799