HHsearch alignment for GI: 254781047 and conserved domain: pfam07724
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=96.90 E-value=0.0022 Score=41.48 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=59.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-HHHHHHHHHHCCCCEEE
Q ss_conf 4998888877289999999985781114--68889999999999999971311224665578-07899999961387999
Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKK--CRLHFYEFMKDVHSRIIMYRKKIEFGEILESD-PIPLVASSIALESRVLC 144 (404)
Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K--~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~d-pl~~va~~l~~~~~lLC 144 (404)
T Consensus 5 ~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~--~~v~~l~g~~~gyvg~~~~G~l~~~v~--~~p~~Vil 80 (168)
T pfam07724 5 SFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEE--HSVSRLIGAPPGYVGYEEGGQLTEAVR--RKPYSIVL 80 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCH--HHHHHHCCCCCCCCCCCCCCCHHHHHH--HCCCCEEE
T ss_conf 99988989989999999999996798534488557565425--699987058998726242650789998--38984898
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHCC--------------CEEEEECCCCHHHH
Q ss_conf 84232047135888999999998549--------------68998178686775
Q gi|254781047|r 145 FDEFMITNIADAIILSRLFAALFSHG--------------CIIVMTSNFIPENL 184 (404)
Q Consensus 145 fDEF~V~DiaDAmil~rl~~~lf~~g--------------v~lV~TSN~~P~dL 184 (404)
T Consensus 81 lDEIeKa~---~~V~~~LL~-ild~g~~~d~~g~~v~~~n~i~i~Tsn~g~~~~ 130 (168)
T pfam07724 81 IDEIEKAH---PGVQNDLLQ-ILEGGTLTDKQGRKVDFRNTLFIMTGNFGSEKI 130 (168)
T ss_pred EHHHHHHC---HHHHHHHHH-HCCCCCEECCCCCEEECCCEEEEECCCCCCHHH
T ss_conf 65776658---999999998-705870636999678446479997687372999