HHsearch alignment for GI: 254781047 and conserved domain: pfam08298
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=93.45 E-value=0.075 Score=31.82 Aligned_cols=209 Identities=16% Similarity=0.182 Sum_probs=92.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH-HHHHHCCCCEE
Q ss_conf 88649988888772899999999857811146888999999999999997131122466557807899-99996138799
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLV-ASSIALESRVL 143 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~v-a~~l~~~~~lL 143 (404)
T Consensus 84 ~kqIllL~GPVGsGKSsl~e~LK~glE~y~----------------~Y~i~g-----sPm~e~PL~L~~p~~~r~~l--- 139 (358)
T pfam08298 84 RKQILYLLGPVGGGKSSLAERLKKLLELVP----------------IYALKG-----SPVFESPLHLFNPHHLRDIL--- 139 (358)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCCCC----------------EEEECC-----CCCCCCCCCCCCHHHHHHHH---
T ss_conf 105899977898775899999998720586----------------488448-----97778985477867759999---
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHCCCCC
Q ss_conf 98423204713588899999999854968998178686775238740566898999998505089804731122112367
Q gi|254781047|r 144 CFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSI 223 (404)
Q Consensus 144 CfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DYR~~~~~~ 223 (404)
T Consensus 140 -e~~~gi~~~--------------------~i~g~l~P-------~~~~rL~e~~Gd~-~~~~V~r~~~S~~~r~gi~-- 188 (358)
T pfam08298 140 -EDEYGIPRR--------------------RLEGDLSP-------WCTKRLEEFGGDI-EKFKVVKIFPSILRQIGIA-- 188 (358)
T ss_pred -HHHHCCCHH--------------------HCCCCCCH-------HHHHHHHHHCCCH-HHEEEEEECCCCCCCEEEE--
T ss_conf -987499521--------------------20898898-------9999999938985-5278999555600456899--
Q ss_pred CCEEEECCCHHHHH---HHHH-HHHHHCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHH----
Q ss_conf 83022035302268---9999-999860444467763276368089961220211110199985210246899999----
Q gi|254781047|r 224 LPIYMTPLNSYNRV---LMDK-LWAHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEI---- 295 (404)
Q Consensus 224 ~~~y~~p~~~~~~~---~l~~-~f~~l~~~~~~~~~~i~v~~gR~i~v~~~~~~va~f~F~eLC~~~lg~~DYi~I---- 295 (404)
T Consensus 189 ---t~~P~D~~nqD~s~L~G~vdi~kl~~~~~~dP~-a-----~~~~G~l~~aNrGl~efvE~~K~~~~~L~~lL~atQE 259 (358)
T pfam08298 189 ---KTEPGDENNQDISALVGKVDIRKLEEYSQNDPD-A-----YSYSGALNRANQGLMEFVEMFKAPIKVLHPLLTATQE 259 (358)
T ss_pred ---EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC-E-----ECCCCCEECCCCCCEEEHHHHCCCHHHHHHHHCCCCC
T ss_conf ---968999876337787433209877410447984-2-----4567700003577554098761829999998522124
Q ss_pred -----HHHCCEEEECCCCCCCCCCHHHHHHHH------HHHHHHHCCCCCEEEE
Q ss_conf -----853788998189878724638999899------9999982289828998
Q gi|254781047|r 296 -----ANRFDVVIINDIPLLKEDRKDWIKRFI------MLIDVFYEHKIGLIIS 338 (404)
Q Consensus 296 -----a~~f~ti~I~~VP~l~~~~~d~arRFI------~LID~lYd~kv~Li~s 338 (404)
T Consensus 260 ~~i~~~~~~~~i~~D~vI-iahsNe~E~~~f~~~~~~eA~~dR~~~v~vPY~lr 312 (358)
T pfam08298 260 GNYNSTEKFSAIPFDGII-LAHSNESEWNSFKSNKNNEAFLDRIVVIKVPYCLR 312 (358)
T ss_pred CCCCCCCCCCCEECCEEE-ECCCCHHHHHHHHCCCCCHHHHCCEEEEECCCCCC
T ss_conf 622477875603314268-76898499998744864346656379996763267