HHsearch alignment for GI: 254781047 and conserved domain: smart00382

>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.57  E-value=0.00025  Score=47.57  Aligned_cols=113  Identities=15%  Similarity=0.011  Sum_probs=58.1

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCHHHHHHHHHHCCC--C
Q ss_conf             8649988888772899999999857811146888999999999999997--13112246655780789999996138--7
Q gi|254781047|r   66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMY--RKKIEFGEILESDPIPLVASSIALES--R  141 (404)
Q Consensus        66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~--~~~~~~~~~~~~dpl~~va~~l~~~~--~  141 (404)
T Consensus         2 ~~~ill~G~~GsGKTtl~~~la~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD   80 (148)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHCCCC-CCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             97899999997029999999998726689-96899875998988898765300011221051999999999999844998


Q ss_pred             EEEEEEEEECCCHHHHHHHHH-------HHHHHHCCCEEEEECCC
Q ss_conf             999842320471358889999-------99998549689981786
Q gi|254781047|r  142 VLCFDEFMITNIADAIILSRL-------FAALFSHGCIIVMTSNF  179 (404)
Q Consensus       142 lLCfDEF~V~DiaDAmil~rl-------~~~lf~~gv~lV~TSN~  179 (404)
T Consensus        81 viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~n~  125 (148)
T smart00382       81 VLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             EEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
T ss_conf             999827502147620799999999998517657899899995699