HHsearch alignment for GI: 254781048 and conserved domain: COG0565
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=94.29 E-value=0.47 Score=26.94 Aligned_cols=81 Identities=20% Similarity=0.214 Sum_probs=49.2
Q ss_pred CCEEEEEC---CCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEEE
Q ss_conf 87289988---98136899999995799869999657881289883076205446887568526974-883789789995
Q gi|254781048|r 3 SNKIALIG---SGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIVT 78 (320)
Q Consensus 3 ~~KV~IIG---aG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVit 78 (320)
T Consensus 4 ~i~iVLVep~~~gNIG~v-ARaMKNfGl~eL~LV~Pr~~-~~eeA~a~A~gA~dile~A~i~--~tL~eAl~d~~~v~aT 79 (242)
T COG0565 4 NIRIVLVEPSHPGNIGSV-ARAMKNFGLSELRLVNPRAG-LDEEARALAAGARDILENAKIV--DTLEEALADCDLVVAT 79 (242)
T ss_pred CCEEEEECCCCCCCHHHH-HHHHHHCCCCEEEEECCCCC-CCHHHHHHHCCCHHHHCCCEEE--CCHHHHHCCCCEEEEE
T ss_conf 617999758887527999-99998679664899789889-8899999864666665067664--6799996078879980
Q ss_pred CCCCCCCCC
Q ss_conf 566667655
Q gi|254781048|r 79 AGIPRKPSM 87 (320)
Q Consensus 79 ag~~~~~g~ 87 (320)
T Consensus 80 tar~r~~~~ 88 (242)
T COG0565 80 TARSRDLLR 88 (242)
T ss_pred CCCCCCCCC
T ss_conf 566676655