HHsearch alignment for GI: 254781048 and conserved domain: COG0771
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane].
Probab=94.00 E-value=0.54 Score=26.57 Aligned_cols=134 Identities=22% Similarity=0.277 Sum_probs=76.5
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH-HHHHHCCCCCCCCEE-EECCCHHHHCCCCEEEEEC
Q ss_conf 98728998898136899999995799869999657881289883-076205446887568-5269748837897899955
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKAL-DIAESSPVEGFGAQL-CGTSDYSDIAEADVCIVTA 79 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~-Dl~~~~~~~~~~~~v-~~~~d~~~l~~aDivVita 79 (320)
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~~~~~~~~~~~~-------~i~~~~g~~~~~~~~~~d~vV~SP 77 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAPEGLAAQPLLLE-------GIEVELGSHDDEDLAEFDLVVKSP 77 (448)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHCC-CEEEEECCCCCCCCHHHHHHHCC-------CCEEECCCCCHHCCCCCCEEEECC
T ss_conf 5997999926651099999999779-86999838987653234444203-------722313764110013477899899
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE--CCCCHH---HHHHHHHHCCCCH--HHHHHHC
Q ss_conf 6666765574678998899999999765412667408871--484207---8999988449986--5611000
Q gi|254781048|r 80 GIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICI--TNPLDA---MVWALQKFSGLPS--HMVVGMA 145 (320)
Q Consensus 80 g~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~~--~rViG~G 145 (320)
T Consensus 78 Gi~~~~p~-v~~A~~~gi~i~~dieL~~r~~-~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p 148 (448)
T COG0771 78 GIPPTHPL-VEAAKAAGIEIIGDIELFYRLS-GEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTP 148 (448)
T ss_pred CCCCCCHH-HHHHHHCCCCEEEHHHHHHHHC-CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEECCCCCCC
T ss_conf 99998889-9999986993774888898744-89998999799962889999999998559983213516713