HHsearch alignment for GI: 254781048 and conserved domain: PRK00141
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=96.20 E-value=0.036 Score=34.20 Aligned_cols=125 Identities=15% Similarity=0.184 Sum_probs=67.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCCC
Q ss_conf 72899889813689999999579986999965788128988307620544688756852697488378978999556666
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIPR 83 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~~ 83 (320)
T Consensus 18 ~kvlV~GlG~SG~s~a~~L~~~G~-~v~~~D~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~d~vV~SPGI~~ 88 (476)
T PRK00141 18 GRVLVAGAGVSGLGIAKMLSELGC-DVVVADDNETQRHMLIEVV-------D-VADISTAQASDALDSYSIVVTSPGWRP 88 (476)
T ss_pred CCEEEEEECHHHHHHHHHHHHCCC-EEEEEECCCCHHHHHHHHC-------C-CCEECCCCHHHHHCCCCEEEECCCCCC
T ss_conf 988999227889999999997899-7999989987035788747-------9-856515530656468999998997899
Q ss_pred CCCCCHHHHHHHHHHHHHHHH--HHHHH---CCCCCCEEEE--CCCCHH---HHHHHHHHCCCCH
Q ss_conf 765574678998899999999--76541---2667408871--484207---8999988449986
Q gi|254781048|r 84 KPSMSRDDLLADNLKAIEKVG--AGIRK---YAPNSFVICI--TNPLDA---MVWALQKFSGLPS 138 (320)
Q Consensus 84 ~~g~~R~dll~~N~~i~~~i~--~~i~~---~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~~ 138 (320)
T Consensus 89 ~~p-~l~~a~~~gi~viseiel~~~~~~~~~~~~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~ 152 (476)
T PRK00141 89 DSP-LLVDAQSAGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQAGGFAA 152 (476)
T ss_pred CCH-HHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 799-9999998799577199999986116433677763889689967989999999998379972