HHsearch alignment for GI: 254781048 and conserved domain: PRK00141

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=96.20  E-value=0.036  Score=34.20  Aligned_cols=125  Identities=15%  Similarity=0.184  Sum_probs=67.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCCC
Q ss_conf             72899889813689999999579986999965788128988307620544688756852697488378978999556666
Q gi|254781048|r    4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIPR   83 (320)
Q Consensus         4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~~   83 (320)
T Consensus        18 ~kvlV~GlG~SG~s~a~~L~~~G~-~v~~~D~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~d~vV~SPGI~~   88 (476)
T PRK00141         18 GRVLVAGAGVSGLGIAKMLSELGC-DVVVADDNETQRHMLIEVV-------D-VADISTAQASDALDSYSIVVTSPGWRP   88 (476)
T ss_pred             CCEEEEEECHHHHHHHHHHHHCCC-EEEEEECCCCHHHHHHHHC-------C-CCEECCCCHHHHHCCCCEEEECCCCCC
T ss_conf             988999227889999999997899-7999989987035788747-------9-856515530656468999998997899


Q ss_pred             CCCCCHHHHHHHHHHHHHHHH--HHHHH---CCCCCCEEEE--CCCCHH---HHHHHHHHCCCCH
Q ss_conf             765574678998899999999--76541---2667408871--484207---8999988449986
Q gi|254781048|r   84 KPSMSRDDLLADNLKAIEKVG--AGIRK---YAPNSFVICI--TNPLDA---MVWALQKFSGLPS  138 (320)
Q Consensus        84 ~~g~~R~dll~~N~~i~~~i~--~~i~~---~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~~  138 (320)
T Consensus        89 ~~p-~l~~a~~~gi~viseiel~~~~~~~~~~~~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~  152 (476)
T PRK00141         89 DSP-LLVDAQSAGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQAGGFAA  152 (476)
T ss_pred             CCH-HHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             799-9999998799577199999986116433677763889689967989999999998379972