HHsearch alignment for GI: 254781048 and conserved domain: PRK01368
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=93.84 E-value=0.33 Score=27.90 Aligned_cols=123 Identities=21% Similarity=0.209 Sum_probs=64.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCC
Q ss_conf 98728998898136899999995799869999657881289883076205446887568526974883789789995566
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGI 81 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~ 81 (320)
T Consensus 5 ~~K~v~V~GlG~sG~a~~~~L~~~--~~~~~~dd~~~~~-----~~~~~~--~~-~~~~~~~~~-~~~~~~d~iV~SPGI 73 (450)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQNK--YDLIVYDDLKANR-----DIFEEL--FS-KNAIIALSD-SRWQNLDKIVLSPGI 73 (450)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHC--CCEEEEECCCCCH-----HHHHHH--HC-CCCEECCCC-CCHHCCCEEEECCCC
T ss_conf 899089995878799999999719--9989998996564-----789975--21-483602571-115219999989961
Q ss_pred CCCCCCCHHHHH-HHHHHHHHHHHHHHHHCCCCCCEEEE--CCCCHH---HHHHHHHHCCCCH
Q ss_conf 667655746789-98899999999765412667408871--484207---8999988449986
Q gi|254781048|r 82 PRKPSMSRDDLL-ADNLKAIEKVGAGIRKYAPNSFVICI--TNPLDA---MVWALQKFSGLPS 138 (320)
Q Consensus 82 ~~~~g~~R~dll-~~N~~i~~~i~~~i~~~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~~ 138 (320)
T Consensus 74 ~~~~--p~~~~a~~~~i~i~~eiel~~~-~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~~~ 133 (450)
T PRK01368 74 PLTH--EIVKIAKNFNIPITSDIDLLFE-KSKNLKFIAITGTNGKSTTTALISHILNSNGLDY 133 (450)
T ss_pred CCCC--HHHHHHHHCCCCEEEHHHHHHH-HCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 9989--9999999879958769999997-6679977999689997489999999999759962