HHsearch alignment for GI: 254781048 and conserved domain: PRK01368

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=93.84  E-value=0.33  Score=27.90  Aligned_cols=123  Identities=21%  Similarity=0.209  Sum_probs=64.4

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCC
Q ss_conf             98728998898136899999995799869999657881289883076205446887568526974883789789995566
Q gi|254781048|r    2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGI   81 (320)
Q Consensus         2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~   81 (320)
T Consensus         5 ~~K~v~V~GlG~sG~a~~~~L~~~--~~~~~~dd~~~~~-----~~~~~~--~~-~~~~~~~~~-~~~~~~d~iV~SPGI   73 (450)
T PRK01368          5 TKQKIGVFGLGKTGISVYEELQNK--YDLIVYDDLKANR-----DIFEEL--FS-KNAIIALSD-SRWQNLDKIVLSPGI   73 (450)
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHC--CCEEEEECCCCCH-----HHHHHH--HC-CCCEECCCC-CCHHCCCEEEECCCC
T ss_conf             899089995878799999999719--9989998996564-----789975--21-483602571-115219999989961


Q ss_pred             CCCCCCCHHHHH-HHHHHHHHHHHHHHHHCCCCCCEEEE--CCCCHH---HHHHHHHHCCCCH
Q ss_conf             667655746789-98899999999765412667408871--484207---8999988449986
Q gi|254781048|r   82 PRKPSMSRDDLL-ADNLKAIEKVGAGIRKYAPNSFVICI--TNPLDA---MVWALQKFSGLPS  138 (320)
Q Consensus        82 ~~~~g~~R~dll-~~N~~i~~~i~~~i~~~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~~  138 (320)
T Consensus        74 ~~~~--p~~~~a~~~~i~i~~eiel~~~-~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~~~  133 (450)
T PRK01368         74 PLTH--EIVKIAKNFNIPITSDIDLLFE-KSKNLKFIAITGTNGKSTTTALISHILNSNGLDY  133 (450)
T ss_pred             CCCC--HHHHHHHHCCCCEEEHHHHHHH-HCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCE
T ss_conf             9989--9999999879958769999997-6679977999689997489999999999759962