HHsearch alignment for GI: 254781048 and conserved domain: PRK01390

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=95.87  E-value=0.12  Score=30.85  Aligned_cols=124  Identities=22%  Similarity=0.253  Sum_probs=68.4

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCC
Q ss_conf             98728998898136899999995799869999657881289883076205446887568526974883789789995566
Q gi|254781048|r    2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGI   81 (320)
Q Consensus         2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~   81 (320)
T Consensus         8 ~gk~v~v~GlG~sG~s~a~~L~~~G-~~V~~~D~~~~~~~~----~~~----~g~~~---~~~~~~~~~~~~~iV~SPGI   75 (457)
T PRK01390          8 KGKTVALFGLGGSGLATARALKAGG-AEVIAWDDNPDSVAK----AAA----AGIAT---ADLRTADWSQFAALVLSPGV   75 (457)
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCHHHHH----HHH----CCCCC---CCCCCCCCCCCCEEEECCCC
T ss_conf             8998999943699999999999789-979999399206689----987----59831---45541232038789999988


Q ss_pred             CCCCCCCH--HHHH-HHHHHHHHHHHH---HHHHCCCCCCEEEE--CCCCHH---HHHHHHHHCCCC
Q ss_conf             66765574--6789-988999999997---65412667408871--484207---899998844998
Q gi|254781048|r   82 PRKPSMSR--DDLL-ADNLKAIEKVGA---GIRKYAPNSFVICI--TNPLDA---MVWALQKFSGLP  137 (320)
Q Consensus        82 ~~~~g~~R--~dll-~~N~~i~~~i~~---~i~~~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~  137 (320)
T Consensus        76 p~~~p~~~~~v~~a~~~gi~v~seielf~~~~~~~~~~~~iIaVTGTnGKTTTtsli~~iL~~~g~~  142 (457)
T PRK01390         76 PLTHPKPHWTVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHLLRQAGRD  142 (457)
T ss_pred             CCCCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf             8656673199999998599186008999999873257898899928996498999999999973998