HHsearch alignment for GI: 254781048 and conserved domain: PRK01438
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=96.29 E-value=0.045 Score=33.55 Aligned_cols=128 Identities=14% Similarity=0.104 Sum_probs=69.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCH-HHHHHHHHHHCCCCCCCCEEEECCCHHH-HCCCCEEEEEC
Q ss_conf 987289988981368999999957998699996578812-8988307620544688756852697488-37897899955
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMP-RGKALDIAESSPVEGFGAQLCGTSDYSD-IAEADVCIVTA 79 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~-~g~~~Dl~~~~~~~~~~~~v~~~~d~~~-l~~aDivVita 79 (320)
T Consensus 13 ~gk~v~V~GlG~sG~s~a~~L~~~G-~~v~~~D~~~~~~~~~~~~~l~~~------g~~~~~g~~~~~~~~~~d~vV~SP 85 (481)
T PRK01438 13 SGLRVVVAGLGVSGFPAADALHELG-ASVTVVADGDDDRSRERAALLEVL------GATVRLGDGETTLPEGTELVVTSP 85 (481)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCCCCCHHHHHHHHHC------CCEEEECCCHHHHHCCCCEEEECC
T ss_conf 8998999957588999999999679-989999799874486899988854------988996887566624899999899
Q ss_pred CCCCCCCCCHHH-HHHHHHHHHHHHH--HHHHHC-CCCCCEEEE--CCCCHH---HHHHHHHHCCCCH
Q ss_conf 666676557467-8998899999999--765412-667408871--484207---8999988449986
Q gi|254781048|r 80 GIPRKPSMSRDD-LLADNLKAIEKVG--AGIRKY-APNSFVICI--TNPLDA---MVWALQKFSGLPS 138 (320)
Q Consensus 80 g~~~~~g~~R~d-ll~~N~~i~~~i~--~~i~~~-~p~~i~ivv--tNPvDv---~~~~~~~~sg~~~ 138 (320)
T Consensus 86 GI~~~~--p~~~~a~~~gi~i~~eiel~~~~~~~~~~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~ 151 (481)
T PRK01438 86 GWRPTH--PLLAAAAEAGIPVWGDVELAWRLRDPDGTPAPWLAVTGTNGKTTTVQMLASILRAAGLRA 151 (481)
T ss_pred CCCCCC--HHHHHHHHCCCCEECHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 789989--999999986993861899999875213688878999389974609999999999669970