HHsearch alignment for GI: 254781048 and conserved domain: PRK04690
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=96.29 E-value=0.028 Score=34.90 Aligned_cols=97 Identities=13% Similarity=0.065 Sum_probs=56.1
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 99872899889813689999999579986999965788128988307620544688756852697488378978999556
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
T Consensus 6 ~~gkkv~V~GlG~sG~aaa~~L~~~g~~~~v~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~l~~~d~vv~SPG 78 (468)
T PRK04690 6 LEGKRVALWGWGREGRAAYRALRAQLPAQPLTVFCNAEEVRE-VGALAD------AALLVETEASAQRLAAFEVVVKSPG 78 (468)
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCCHH-HHHHCC------CCCEEECCCCHHHHHCCCEEEECCC
T ss_conf 397979998347879999999996699049997288324646-676204------5756746778557614889998995
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 6667655746789988999999997
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGA 105 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~ 105 (320)
T Consensus 79 i~~~~p-~~~~a~~~~i~i~~eiel 102 (468)
T PRK04690 79 ISPYRP-EALAAAAQGTPFIGGTAL 102 (468)
T ss_pred CCCCCH-HHHHHHHCCCCEEEHHHH
T ss_conf 798689-999999879948868999