HHsearch alignment for GI: 254781048 and conserved domain: TIGR02279
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC; InterPro: IPR011967 This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring . The sequences included in this entry are all found in possible operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN . Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. .
Probab=97.43 E-value=0.00029 Score=47.75 Aligned_cols=227 Identities=20% Similarity=0.282 Sum_probs=126.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH-----HHHH--------HCCCCCCCCEEEECCCHHH
Q ss_conf 98728998898136899999995799869999657881289883-----0762--------0544688756852697488
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKAL-----DIAE--------SSPVEGFGAQLCGTSDYSD 68 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~-----Dl~~--------~~~~~~~~~~v~~~~d~~~ 68 (320)
T Consensus 4 ~~v~vaVIGaGaMGaGIA~VAA~aGH-~V~LYD~r~e-A~a~a~agIe~~L~~lV~kgkL~a~e~e~~l~Rl~PV~~l~a 81 (508)
T TIGR02279 4 NVVKVAVIGAGAMGAGIAQVAARAGH-QVLLYDIRAE-ALARAVAGIEKRLKSLVEKGKLTAEEAERTLKRLVPVTDLEA 81 (508)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC-EEEEECCCHH-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHH
T ss_conf 41068996468521038999982598-4887228889-999999999999888752377778888888731787789999
Q ss_pred HCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCH-HHHHHHHHHCCCCHHHHHHH--
Q ss_conf 3789789995566667655746789988999999997654126-6740887148420-78999988449986561100--
Q gi|254781048|r 69 IAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYA-PNSFVICITNPLD-AMVWALQKFSGLPSHMVVGM-- 144 (320)
Q Consensus 69 l~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~~i~ivvtNPvD-v~~~~~~~~sg~~~~rViG~-- 144 (320)
T Consensus 82 lAdAgLvIEAi--------------vE~L~VK~aLFaqLe~lc~ad~--iiasNTSSlSIta~AAgla--rP~rvaGlHF 143 (508)
T TIGR02279 82 LADAGLVIEAI--------------VENLEVKKALFAQLEELCTADA--IIASNTSSLSITALAAGLA--RPERVAGLHF 143 (508)
T ss_pred HHHCCCCHHHH--------------HHHHHHHHHHHHHHHHHCCHHH--HHHHCHHHHHHHHHHHHHC--CCCEEEECCC
T ss_conf 86027322467--------------7406777999998986367015--2562325777999997313--8770751113
Q ss_pred ----------------CCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHH
Q ss_conf ----------------0525689999999997198733550567507885246510235447701554300158787679
Q gi|254781048|r 145 ----------------AGILDSARFRYFLAQEFGVSVESVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKLGWTTQEKI 208 (320)
Q Consensus 145 ----------------Gt~LDs~R~~~~ia~~l~v~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~ 208 (320)
T Consensus 144 FNPAP~MaLVEVVSGLaT~~eVae~ly~~------------a~aWGK-----~PVh~~STPGFI-VNRVAR--PyYaEal 203 (508)
T TIGR02279 144 FNPAPVMALVEVVSGLATEAEVAEQLYET------------ARAWGK-----QPVHARSTPGFI-VNRVAR--PYYAEAL 203 (508)
T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHHH------------HHHCCC-----CCCCCCCCCCCE-ECCCCC--CHHHHHH
T ss_conf 48655362156623635428999999999------------873288-----563234698823-426567--3178999
Q ss_pred HHHHHHHHCCHHHHH-HHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEE
Q ss_conf 999845510158888-7515765432203232344554528897499999997364475634788769
Q gi|254781048|r 209 DQIVKRTREGGAEIV-GLLRSGSAYYAPASSAIAIAESYLKNKKNLLPCAAHLSGQYGVEGFYVGVPV 275 (320)
Q Consensus 209 ~~l~~~v~~~g~~ii-~~~~kg~t~~~~a~a~~~ii~aIl~~~~~v~~~s~~~~g~yg~~~v~~s~P~ 275 (320)
T Consensus 204 R~L~E~~A~--pa~lDA~LRdg~GF---~MGpfELtDLIG~DVNfAVTcSVF-~Af~~drR-F~PSlv 264 (508)
T TIGR02279 204 RVLEEQVAE--PAVLDALLRDGAGF---AMGPFELTDLIGHDVNFAVTCSVF-DAFYQDRR-FLPSLV 264 (508)
T ss_pred HHHHCCCCC--HHHHHHHHHHCCCC---CCCHHHHHHHCCCCCCHHHHHHHH-HHHHHCCC-CCCCHH
T ss_conf 873025768--46898997505888---874466755204552300001023-20100347-898644