HHsearch alignment for GI: 254781048 and conserved domain: TIGR02441
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial; InterPro: IPR012803 Members of this family represent the alpha subunit of the mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (4.2.1.17 from EC) and 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC). Some characterization of these proteins has been done in human (P40939 from SWISSPROT), pig (Q29554 from SWISSPROT) and rat (Q64428 from SWISSPROT). The beta subunit has acetyl-CoA C-acyltransferase (2.3.1.16 from EC) activity.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004300 enoyl-CoA hydratase activity, 0006635 fatty acid beta-oxidation, 0005739 mitochondrion, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=94.14 E-value=0.0026 Score=41.57 Aligned_cols=74 Identities=31% Similarity=0.517 Sum_probs=46.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCC-CHHHHHHH---HHHH------CCCCC--CCCEEEECCCHHHHCC
Q ss_conf 72899889813689999999579986999965788-12898830---7620------54468--8756852697488378
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDG-MPRGKALD---IAES------SPVEG--FGAQLCGTSDYSDIAE 71 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~-~~~g~~~D---l~~~------~~~~~--~~~~v~~~~d~~~l~~ 71 (320)
T Consensus 338 k~~avlGAGLMGAGIaqVsvDKG~-~tvlkDat~~gl~RGq~Qv~kgLn~~VKrk~i~~lErd~i~~~L~~~lDY~~f~~ 416 (740)
T TIGR02441 338 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATEAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGFKN 416 (740)
T ss_pred CEEEEECCCCCCCCEEEEEEECCC-EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCC
T ss_conf 237886134002724899981771-4632004467887328889864223334667545446668861565415333001
Q ss_pred CCEEEEE
Q ss_conf 9789995
Q gi|254781048|r 72 ADVCIVT 78 (320)
Q Consensus 72 aDivVit 78 (320)
T Consensus 417 AD~vIEA 423 (740)
T TIGR02441 417 ADVVIEA 423 (740)
T ss_pred CCEEEEE
T ss_conf 7778997