HHsearch alignment for GI: 254781048 and conserved domain: TIGR03466
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=96.99 E-value=0.018 Score=36.19 Aligned_cols=103 Identities=14% Similarity=0.172 Sum_probs=66.7
Q ss_pred EEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEE--CCCH----HHHCCCCEEEE
Q ss_conf 2899889-813689999999579986999965788128988307620544688756852--6974----88378978999
Q gi|254781048|r 5 KIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCG--TSDY----SDIAEADVCIV 77 (320)
Q Consensus 5 KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~--~~d~----~~l~~aDivVi 77 (320)
T Consensus 2 riLVTGgtGfiG~~l~~~L~~~G~-~V~~l~r~~~~~~~----~~~------~~~~~~~gDl~d~~~~~~~~~~~d~ViH 70 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLERGE-EVRVLVRPTSDRRN----LEG------LDVEIVEGDLRDPASLRKALAGCRALFH 70 (328)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCCHHH----HCC------CCCEEEEEECCCHHHHHHHHHCCCEEEE
T ss_conf 499986777999999999997849-89999899986556----521------7977998207999999999717858976
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 55666676557467899889999999976541266740887
Q gi|254781048|r 78 TAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVIC 118 (320)
Q Consensus 78 tag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~iv 118 (320)
T Consensus 71 ~Aa~~~~~~~~~~~~~~~Nv~gt~nll~aa~~~~v~r~V~~ 111 (328)
T TIGR03466 71 VAADYRLWAPDPEEMYRANVEGTRNLLRAALEAGVERVVYT 111 (328)
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 13423446799899999999999999999997298743156