HHsearch alignment for GI: 254781048 and conserved domain: cd00704
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=0 Score=557.80 Aligned_cols=305 Identities=23% Similarity=0.323 Sum_probs=275.9
Q ss_pred EEEEECC-CCHHHHHHHHHHHCCC-CE-----EEEEECCC--CCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEE
Q ss_conf 2899889-8136899999995799-86-----99996578--81289883076205446887568526974883789789
Q gi|254781048|r 5 KIALIGS-GMIGGTLAHLAVLKKL-GD-----VVLLDIVD--GMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVC 75 (320)
Q Consensus 5 KV~IIGa-G~VG~~~a~~~~~~~l-~e-----i~L~D~~~--~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDiv 75 (320)
T Consensus 2 KV~IiGA~G~IG~~la~~l~~~~l~g~~~~i~l~L~Di~~~~~~~~G~~mdl~~~a~~~-~~~v~~~~~~~~~~~~aDvV 80 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPL-LKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCC-CCCEEECCCHHHHHCCCCEE
T ss_conf 89998999789999999997286369986008999758886555314878665346655-58748428858983799889
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHH
Q ss_conf 995566667655746789988999999997654126-6740887148420789999884499865611000525689999
Q gi|254781048|r 76 IVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYA-PNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFR 154 (320)
Q Consensus 76 Vitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~ 154 (320)
T Consensus 81 iitaG~prkpG~tR~DLl~~N~~I~k~~~~~i~~~a~p~~~vivvsNPvD~~~~v~~k~sg~~~~~~i~~~t~LDsaR~r 160 (323)
T cd00704 81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIALKNAPNLPPKNFTALTRLDHNRAK 160 (323)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHH
T ss_conf 98278788999827999987489999999999851799838999578646899999997699982479996527999999
Q ss_pred HHHHHHCCCCCCCCEEE-EECCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCC-
Q ss_conf 99999719873355056-7507885246510235447701554300158787679999845510158888751576543-
Q gi|254781048|r 155 YFLAQEFGVSVESVTAL-VLGSHGDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLLRSGSAY- 232 (320)
Q Consensus 155 ~~ia~~l~v~~~~V~~~-ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~~kg~t~- 232 (320)
T Consensus 161 ~~la~~l~v~~~~V~~~iI~GeHGds~vp~~s~a~V~G~p~~~~~~~~~~~~~~~~e~~~~v~~~g~eIi~~--kg~ts~ 238 (323)
T cd00704 161 AQVARKLGVRVSDVKNVIIWGNHSNTQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKK--RGASSA 238 (323)
T ss_pred HHHHHHHCCCHHHCEEEEEEECCCCCEEECCCCCEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH--CCCCHH
T ss_conf 999999783978927879998786867863010889877067863114565889989999998429999982--285568
Q ss_pred CCCHHHHHHHHHHHHCC--CCEEEEEEEEECCC-CCC-CCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 22032323445545288--97499999997364-475-634788769997872288847999889999999999999999
Q gi|254781048|r 233 YAPASSAIAIAESYLKN--KKNLLPCAAHLSGQ-YGV-EGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATVDL 308 (320)
Q Consensus 233 ~~~a~a~~~ii~aIl~~--~~~v~~~s~~~~g~-yg~-~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~~~ 308 (320)
T Consensus 239 ~s~a~a~~~~~~~~~~~~~~~~~~s~~v~~~g~~yGi~~gv~~s~P~~ig~~Gve~V~el~L~e~E~~~l~~S~~~L~ee 318 (323)
T cd00704 239 ASAAKAIADHVKDWLFGTPPGEIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVEDLKLNDWLREKLKATEEELIEE 318 (323)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 89999999999998528888868989998288667888887999869994998999826789999999999999999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254781048|r 309 CNSC 312 (320)
Q Consensus 309 ~~~~ 312 (320)
T Consensus 319 ~~~a 322 (323)
T cd00704 319 KEIA 322 (323)
T ss_pred HHHH
T ss_conf 9843