HHsearch alignment for GI: 254781048 and conserved domain: cd00762
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.62 E-value=0.053 Score=33.07 Aligned_cols=132 Identities=11% Similarity=0.156 Sum_probs=75.5
Q ss_pred CCEEEEECCCCHHHHHHHHHH----HCCCC------EEEEEECCCCCHHHHHHHHHHH-CCCCCCCCEEEECCCHH-HHC
Q ss_conf 872899889813689999999----57998------6999965788128988307620-54468875685269748-837
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAV----LKKLG------DVVLLDIVDGMPRGKALDIAES-SPVEGFGAQLCGTSDYS-DIA 70 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~----~~~l~------ei~L~D~~~~~~~g~~~Dl~~~-~~~~~~~~~v~~~~d~~-~l~ 70 (320)
T Consensus 25 d~riv~~GAGsAg~gia~~l~~~~~~~Gl~~~ea~~~i~lvD~~GLl~~~r-~~~~~~~~~~~~~~~~~~~~~~L~e~v~ 103 (254)
T cd00762 25 EHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNR-KETCPNEYHLARFANPERESGDLEDAVE 103 (254)
T ss_pred HCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHCCEEEECCCCCEECCC-CCCCHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 858999883299999999999986432653243321078853777325797-5458888999986476776799999998
Q ss_pred --CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCH---HHHHHHHHHCCCCHHHHHHHC
Q ss_conf --897899955666676557467899889999999976541266740887148420---789999884499865611000
Q gi|254781048|r 71 --EADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLD---AMVWALQKFSGLPSHMVVGMA 145 (320)
Q Consensus 71 --~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvD---v~~~~~~~~sg~~~~rViG~G 145 (320)
T Consensus 104 ~~kptvLIG~S~~~---g~-----Ft------eevv~~Ma~~~~~PIIFaLSNPt~~aE~~peda~~~t~G--~ai~AtG 167 (254)
T cd00762 104 AAKPDFLIGVSRVG---GA-----FT------PEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEG--RAIFASG 167 (254)
T ss_pred HHCCCEEEEECCCC---CC-----CC------HHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHCCC--CEEEEEC
T ss_conf 63998899958998---98-----89------999997763388988997789998677999999975189--7899978
Q ss_pred CCHHHH
Q ss_conf 525689
Q gi|254781048|r 146 GILDSA 151 (320)
Q Consensus 146 t~LDs~ 151 (320)
T Consensus 168 spf~pv 173 (254)
T cd00762 168 SPFHPV 173 (254)
T ss_pred CCCCCE
T ss_conf 977881