HHsearch alignment for GI: 254781048 and conserved domain: cd01065
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.23 E-value=0.0015 Score=43.13 Aligned_cols=133 Identities=18% Similarity=0.175 Sum_probs=79.6
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 99872899889813689999999579986999965788128988307620544688756852697488378978999556
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
T Consensus 17 ~~~k~vlIlGaGGaarai~~aL~~~g~~~I~i~nR~~~r~~~l~~~~~~~~~----~~~--~~~~~~~~~~~dliIN~tp 90 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGI----AIA--YLDLEELLAEADLIINTTP 90 (155)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC----CEE--ECCHHHHHCCCCEEEECCC
T ss_conf 5799999986758999999999971998228860899999999998501366----401--0453443156887987677
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-CEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHH
Q ss_conf 6667655746789988999999997654126674-08871484207899998844998656110005256899999
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNS-FVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRY 155 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~-i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~ 155 (320)
T Consensus 91 ~G~~~~~--~~p~~~------------~~~~~~~~~~D~iY~P~~T~ll~~a~~~g~~--~i~Gl~Mli~Qa~~~f 150 (155)
T cd01065 91 VGMKPGD--ELPLPP------------SLLKPGGVVYDVVYNPLETPLLKEARALGAK--TIDGLEMLVYQAAEAF 150 (155)
T ss_pred CCCCCCC--CCCCCH------------HHCCCCCEEEECCCCCCCCHHHHHHHHCCCE--EECCHHHHHHHHHHHH
T ss_conf 8777877--676788------------7759986898653178788999999998395--8773999999999999