HHsearch alignment for GI: 254781048 and conserved domain: cd01487

>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.53  E-value=0.012  Score=37.32  Aligned_cols=135  Identities=21%  Similarity=0.262  Sum_probs=78.1

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCCCC
Q ss_conf             28998898136899999995799869999657881289883076205446887568526974883789789995566667
Q gi|254781048|r    5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIPRK   84 (320)
Q Consensus         5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~~~   84 (320)
T Consensus         1 kV~IvG~GGLG~~~a~~La~aGvg~i~lvD~D~V---------e------~SNL~RQ---~~~~---~di-----G~~--   52 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV---------E------PSNLNRQ---QYFL---SQI-----GEP--   52 (174)
T ss_pred             CEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCC---------C------CCCHHCC---HHHH---HHC-----CCH--
T ss_conf             9899876788999999999818973999989946---------6------6443013---2477---747-----974--


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHCCC-
Q ss_conf             6557467899889999999976541266740887148420789999884499865611000525689999999997198-
Q gi|254781048|r   85 PSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQEFGV-  163 (320)
Q Consensus        85 ~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~l~v-  163 (320)
T Consensus        53 ----K----------a~~a~~~l~~iNp~i~i~~~~~~l~~~n~~-~l~~~~D--~Vi---D~~Dn~~tr~~l~~~~~~~  112 (174)
T cd01487          53 ----K----------VEALKENLREINPFVKIEAINIKIDENNLE-GLFGDCD--IVV---EAFDNAETKAMLAESLLGN  112 (174)
T ss_pred             ----H----------HHHHHHHHHHHCCCCEEEEEECCCCHHHHH-HHHHCCC--EEE---ECCCCHHHHHHHHHHHHHH
T ss_conf             ----9----------999999999879798899991444999999-9983799--999---9999989999999999998


Q ss_pred             -CCCCCEEEEECCCCCEEEEECCCC
Q ss_conf             -733550567507885246510235
Q gi|254781048|r  164 -SVESVTALVLGSHGDSMVPMLRYA  187 (320)
Q Consensus       164 -~~~~V~~~ViGeHGds~vp~~S~~  187 (320)
T Consensus       113 ~~~plv~as~~~~~g~~~~~~~~~~  137 (174)
T cd01487         113 KNKPVVCASGMAGFGDSNNIKTKKI  137 (174)
T ss_pred             CCCCEEEEEEECCCCCCEEEECCCC
T ss_conf             7995999974510866057736999