HHsearch alignment for GI: 254781048 and conserved domain: cd04124
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=90.05 E-value=1.6 Score=23.50 Aligned_cols=105 Identities=22% Similarity=0.304 Sum_probs=57.1
Q ss_pred EEEEECCCCHHHH-HHHHHHHCCCCE-------EEEEECCCCCHHH--HHHHHHHHCCCCCCCCEEEECCCHHHHCCCCE
Q ss_conf 2899889813689-999999579986-------9999657881289--88307620544688756852697488378978
Q gi|254781048|r 5 KIALIGSGMIGGT-LAHLAVLKKLGD-------VVLLDIVDGMPRG--KALDIAESSPVEGFGAQLCGTSDYSDIAEADV 74 (320)
Q Consensus 5 KV~IIGaG~VG~~-~a~~~~~~~l~e-------i~L~D~~~~~~~g--~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDi 74 (320)
T Consensus 2 KivllGd~~VGKTsli~r~~~~~f~~~~~~Tig~~~~~~~-~~~~~~~~~l~iwDtaG~-----e~f~~~~~~y~~~a~~ 75 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHN-AKFEGKTILVDFWDTAGQ-----ERFQTMHASYYHKAHA 75 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEE-EEECCEEEEEEEEECCCC-----CCCCHHHHHHHCCCCE
T ss_conf 8999998996789999999809779972665415799999-999999999999979998-----4343246997356876
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHH
Q ss_conf 999556666765574678998899999999765412667408871484207
Q gi|254781048|r 75 CIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDA 125 (320)
Q Consensus 75 vVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv 125 (320)
T Consensus 76 ~ilvfDit------~~~Sf~-~---~~~w~~~i~~~~~~~p~ilVgNK~DL 116 (161)
T cd04124 76 CILVFDVT------RKITYK-N---LSKWYEELREYRPEIPCIVVANKIDL 116 (161)
T ss_pred EEEEEECC------CHHHHH-H---HHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 79999689------778899-9---99999999986869989999997117