HHsearch alignment for GI: 254781048 and conserved domain: cd04124

>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=90.05  E-value=1.6  Score=23.50  Aligned_cols=105  Identities=22%  Similarity=0.304  Sum_probs=57.1

Q ss_pred             EEEEECCCCHHHH-HHHHHHHCCCCE-------EEEEECCCCCHHH--HHHHHHHHCCCCCCCCEEEECCCHHHHCCCCE
Q ss_conf             2899889813689-999999579986-------9999657881289--88307620544688756852697488378978
Q gi|254781048|r    5 KIALIGSGMIGGT-LAHLAVLKKLGD-------VVLLDIVDGMPRG--KALDIAESSPVEGFGAQLCGTSDYSDIAEADV   74 (320)
Q Consensus         5 KV~IIGaG~VG~~-~a~~~~~~~l~e-------i~L~D~~~~~~~g--~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDi   74 (320)
T Consensus         2 KivllGd~~VGKTsli~r~~~~~f~~~~~~Tig~~~~~~~-~~~~~~~~~l~iwDtaG~-----e~f~~~~~~y~~~a~~   75 (161)
T cd04124           2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHN-AKFEGKTILVDFWDTAGQ-----ERFQTMHASYYHKAHA   75 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEE-EEECCEEEEEEEEECCCC-----CCCCHHHHHHHCCCCE
T ss_conf             8999998996789999999809779972665415799999-999999999999979998-----4343246997356876


Q ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHH
Q ss_conf             999556666765574678998899999999765412667408871484207
Q gi|254781048|r   75 CIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDA  125 (320)
Q Consensus        75 vVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv  125 (320)
T Consensus        76 ~ilvfDit------~~~Sf~-~---~~~w~~~i~~~~~~~p~ilVgNK~DL  116 (161)
T cd04124          76 CILVFDVT------RKITYK-N---LSKWYEELREYRPEIPCIVVANKIDL  116 (161)
T ss_pred             EEEEEECC------CHHHHH-H---HHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf             79999689------778899-9---99999999986869989999997117