HHsearch alignment for GI: 254781048 and conserved domain: cd04133
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=92.14 E-value=0.65 Score=26.03 Aligned_cols=106 Identities=22% Similarity=0.276 Sum_probs=59.4
Q ss_pred EEEEECCCCHHHH-HHHHHHHCCCC-E----E-EE----EECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCC
Q ss_conf 2899889813689-99999957998-6----9-99----96578812898830762054468875685269748837897
Q gi|254781048|r 5 KIALIGSGMIGGT-LAHLAVLKKLG-D----V-VL----LDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEAD 73 (320)
Q Consensus 5 KV~IIGaG~VG~~-~a~~~~~~~l~-e----i-~L----~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aD 73 (320)
T Consensus 3 KivllGd~~VGKTsL~~rf~~~~F~~~~~pTi~~~~~~~i~v~~~---~~~l~iwDTaG~e~~-----~~l~~~~y~~a~ 74 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGN---TVNLGLWDTAGQEDY-----NRLRPLSYRGAD 74 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCE---EEEEEEEECCCCCCC-----CHHHHHHHCCCC
T ss_conf 999989999779999999965989998678535899999999998---999999979997654-----246898726787
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHH
Q ss_conf 899955666676557467899889999999976541266740887148420789
Q gi|254781048|r 74 VCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMV 127 (320)
Q Consensus 74 ivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~ 127 (320)
T Consensus 75 ~~ilvydi~-----~~~Sf~----~~~~~w~~~~~~~~~~~piilvGnK~DL~~ 119 (176)
T cd04133 75 VFVLAFSLI-----SRASYE----NVLKKWVPELRHYAPNVPIVLVGTKLDLRD 119 (176)
T ss_pred EEEEEEECC-----CHHHHH----HHHHHHHHHHHHHCCCCCEEEEEECHHHHH
T ss_conf 579999789-----878999----999999999998684998899998632021