HHsearch alignment for GI: 254781048 and conserved domain: cd04174
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=91.68 E-value=1.1 Score=24.47 Aligned_cols=135 Identities=19% Similarity=0.234 Sum_probs=69.6
Q ss_pred EEEEECCCCHHHHHH-HHHHHCCCCE-----E---E--EEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCC
Q ss_conf 289988981368999-9999579986-----9---9--996578812898830762054468875685269748837897
Q gi|254781048|r 5 KIALIGSGMIGGTLA-HLAVLKKLGD-----V---V--LLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEAD 73 (320)
Q Consensus 5 KV~IIGaG~VG~~~a-~~~~~~~l~e-----i---~--L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aD 73 (320)
T Consensus 15 KiVlVGD~~VGKTsLl~~~~~~~F~~~y~pTv~~~~~~~i~v~~~~---v~L~lWDTAGqE~-----y~~lr~~yY~~a~ 86 (232)
T cd04174 15 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQR---VELSLWDTSGSPY-----YDNVRPLCYSDSD 86 (232)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCEE---EEEEEEECCCCCC-----CCHHHHHHHCCCC
T ss_conf 9999998998999999999739899985883688889999999999---9999983899701-----0036799740687
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHH--HHHHHHHCCCCHHHHHHHCCCHHHH
Q ss_conf 89995566667655746789988999999997654126674088714842078--9999884499865611000525689
Q gi|254781048|r 74 VCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAM--VWALQKFSGLPSHMVVGMAGILDSA 151 (320)
Q Consensus 74 ivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~--~~~~~~~sg~~~~rViG~Gt~LDs~ 151 (320)
T Consensus 87 ~~ll~Fdvt~------~~Sfe~---~~~~Wi~Ei~~~~p~~piiLVGnK~DLr~d~~~l~~L~~-~~~~pVt~----eeg 152 (232)
T cd04174 87 AVLLCFDISR------PETVDS---ALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSN-QKQAPISY----EQG 152 (232)
T ss_pred EEEEEEECCC------HHHHHH---HHHHHHHHHHHHCCCCCEEEEEECHHCCCCHHHHHHHHH-CCCCCCCH----HHH
T ss_conf 8999996898------799998---999999999986899978999876021547577889975-68887579----999
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999999971987
Q gi|254781048|r 152 RFRYFLAQEFGVS 164 (320)
Q Consensus 152 R~~~~ia~~l~v~ 164 (320)
T Consensus 153 ~---~~Ak~iga~ 162 (232)
T cd04174 153 C---ALAKQLGAE 162 (232)
T ss_pred H---HHHHHCCCC
T ss_conf 9---999974997