Query gi|254781048|ref|YP_003065461.1| malate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 320
No_of_seqs 128 out of 2346
Neff 6.8
Searched_HMMs 39220
Date Mon May 30 06:11:24 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781048.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01771 L-LDH-NAD L-lactate 100.0 0 0 769.0 25.0 298 8-307 1-302 (302)
2 PTZ00082 L-lactate dehydrogena 100.0 0 0 674.8 30.9 313 1-313 5-322 (322)
3 PTZ00117 malate dehydrogenase; 100.0 0 0 670.2 31.8 312 3-316 1-312 (313)
4 PRK00066 ldh L-lactate dehydro 100.0 0 0 664.7 33.2 307 2-312 5-313 (315)
5 PRK06223 malate dehydrogenase; 100.0 0 0 661.1 33.7 310 5-317 2-312 (312)
6 cd05290 LDH_3 A subgroup of L- 100.0 0 0 654.2 31.2 304 5-310 1-307 (307)
7 cd05292 LDH_2 A subgroup of L- 100.0 0 0 650.4 32.5 304 5-312 2-308 (308)
8 cd05291 HicDH_like L-2-hydroxy 100.0 0 0 647.8 33.1 305 4-311 1-306 (306)
9 cd05293 LDH_1 A subgroup of L- 100.0 0 0 648.4 32.2 307 2-311 2-312 (312)
10 TIGR01763 MalateDH_bact malate 100.0 0 0 655.9 24.8 304 3-311 1-307 (308)
11 cd01339 LDH-like_MDH L-lactate 100.0 0 0 646.5 31.7 300 6-310 1-300 (300)
12 COG0039 Mdh Malate/lactate deh 100.0 0 0 642.6 31.7 311 4-317 1-312 (313)
13 cd05294 LDH-like_MDH_nadp A la 100.0 0 0 639.1 30.6 303 5-312 2-309 (309)
14 cd00300 LDH_like L-lactate deh 100.0 0 0 635.1 31.1 299 6-310 1-300 (300)
15 KOG1495 consensus 100.0 0 0 592.8 26.5 308 2-312 19-330 (332)
16 cd00704 MDH Malate dehydrogena 100.0 0 0 557.8 31.4 305 5-312 2-322 (323)
17 cd01337 MDH_glyoxysomal_mitoch 100.0 0 0 543.1 29.8 295 5-315 2-309 (310)
18 PTZ00325 malate dehydrogenase; 100.0 0 0 538.0 31.0 298 4-318 2-311 (313)
19 cd01338 MDH_choloroplast_like 100.0 0 0 537.3 28.6 306 2-313 1-321 (322)
20 PRK05086 malate dehydrogenase; 100.0 0 0 528.3 30.8 296 5-316 2-310 (312)
21 cd00650 LDH_MDH_like NAD-depen 100.0 0 0 526.1 27.5 258 6-310 1-263 (263)
22 PRK05442 malate dehydrogenase; 100.0 0 0 524.7 27.9 309 1-316 1-325 (325)
23 cd01336 MDH_cytoplasmic_cytoso 100.0 0 0 487.8 29.4 305 2-312 1-324 (325)
24 TIGR01772 MDH_euk_gproteo mala 100.0 0 0 411.0 21.7 299 5-315 1-376 (379)
25 TIGR01759 MalateDH-SF1 malate 100.0 0 0 407.6 24.2 304 1-311 1-328 (329)
26 KOG1494 consensus 100.0 0 0 381.9 22.8 297 3-318 28-341 (345)
27 TIGR01758 MDH_euk_cyt malate d 100.0 0 0 361.0 19.7 301 5-313 1-324 (325)
28 cd04510 consensus 100.0 0 0 337.7 24.7 301 3-312 1-333 (334)
29 cd05295 MDH_like Malate dehydr 100.0 1.4E-45 0 315.6 26.9 299 2-312 122-450 (452)
30 pfam02866 Ldh_1_C lactate/mala 100.0 1.4E-45 0 317.2 16.8 170 146-316 1-173 (173)
31 KOG1496 consensus 100.0 2.1E-42 0 295.4 20.8 308 3-317 4-331 (332)
32 pfam00056 Ldh_1_N lactate/mala 100.0 1.4E-41 0 290.0 14.9 139 5-144 2-142 (142)
33 TIGR01756 LDH_protist lactate 100.0 2.6E-37 6.7E-42 262.3 16.0 290 19-316 2-313 (314)
34 TIGR01757 Malate-DH_plant mala 100.0 5.6E-30 1.4E-34 214.7 17.0 307 4-316 46-369 (390)
35 cd05297 GH4_alpha_glucosidase_ 99.9 6.2E-20 1.6E-24 149.5 22.6 301 5-313 2-389 (423)
36 cd05296 GH4_P_beta_glucosidase 99.9 3.8E-19 9.8E-24 144.4 23.6 300 5-312 2-380 (419)
37 cd05197 GH4_glycoside_hydrolas 99.9 6.5E-19 1.7E-23 142.9 24.1 301 5-313 2-392 (425)
38 COG1486 CelF Alpha-galactosida 99.9 2.3E-18 5.7E-23 139.4 24.4 304 1-312 1-397 (442)
39 cd05298 GH4_GlvA_pagL_like Gly 99.8 3E-18 7.5E-23 138.6 23.9 301 5-313 2-395 (437)
40 pfam02056 Glyco_hydro_4 Family 99.6 3.1E-14 7.9E-19 112.5 12.8 155 5-163 1-183 (183)
41 COG1004 Ugd Predicted UDP-gluc 98.8 3.4E-07 8.7E-12 66.8 12.6 162 5-178 2-174 (414)
42 PRK06130 3-hydroxybutyryl-CoA 98.6 3.1E-07 7.9E-12 67.1 8.9 145 4-165 6-174 (310)
43 PRK07819 3-hydroxybutyryl-CoA 98.6 2E-07 5E-12 68.3 7.8 125 4-144 3-139 (284)
44 PRK08268 3-hydroxybutyryl-CoA 98.6 4.3E-07 1.1E-11 66.1 9.0 146 3-165 3-178 (503)
45 PRK05808 3-hydroxybutyryl-CoA 98.6 3.4E-07 8.6E-12 66.8 8.1 147 1-165 1-178 (282)
46 PRK07530 3-hydroxybutyryl-CoA 98.5 4.3E-07 1.1E-11 66.1 7.7 147 1-165 2-179 (292)
47 TIGR03026 NDP-sugDHase nucleot 98.5 8.6E-07 2.2E-11 64.2 8.9 149 5-160 2-165 (411)
48 PRK06035 3-hydroxyacyl-CoA deh 98.5 4.5E-07 1.1E-11 66.0 7.4 148 1-165 1-181 (291)
49 pfam02737 3HCDH_N 3-hydroxyacy 98.5 4.2E-07 1.1E-11 66.2 7.1 156 5-216 1-168 (180)
50 PRK08293 3-hydroxybutyryl-CoA 98.5 7.3E-07 1.9E-11 64.7 8.1 126 1-144 1-141 (288)
51 PRK07660 consensus 98.4 9E-07 2.3E-11 64.1 7.4 148 1-165 1-178 (283)
52 PRK09117 consensus 98.4 1.1E-06 2.7E-11 63.6 7.3 145 4-165 3-177 (282)
53 PRK11730 fadB multifunctional 98.4 4.4E-06 1.1E-10 59.5 9.7 147 3-166 313-489 (715)
54 PRK06129 3-hydroxyacyl-CoA deh 98.3 2.8E-06 7.1E-11 60.9 8.1 106 4-125 3-121 (308)
55 COG1250 FadB 3-hydroxyacyl-CoA 98.3 4.4E-06 1.1E-10 59.6 8.7 146 1-164 1-177 (307)
56 PRK11154 fadJ multifunctional 98.3 4.7E-06 1.2E-10 59.4 8.4 145 3-165 309-485 (706)
57 PRK09260 3-hydroxybutyryl-CoA 98.3 1.9E-06 4.8E-11 62.0 6.2 145 4-165 3-178 (289)
58 pfam03721 UDPG_MGDP_dh_N UDP-g 98.3 2.7E-05 6.8E-10 54.5 11.6 147 5-160 2-163 (185)
59 PRK11064 wecC UDP-N-acetyl-D-m 98.2 2.3E-05 5.7E-10 55.0 10.7 117 1-127 1-127 (415)
60 PRK07531 bifunctional 3-hydrox 98.2 2.8E-05 7.2E-10 54.4 11.1 122 4-142 3-133 (489)
61 pfam01210 NAD_Gly3P_dh_N NAD-d 98.2 3E-05 7.7E-10 54.2 11.0 101 4-121 1-105 (159)
62 COG1748 LYS9 Saccharopine dehy 98.0 0.00035 9E-09 47.2 13.4 148 3-177 1-159 (389)
63 PRK07066 3-hydroxybutyryl-CoA 98.0 3.1E-05 7.9E-10 54.1 7.5 106 3-124 7-121 (321)
64 PRK06522 2-dehydropantoate 2-r 98.0 6.7E-05 1.7E-09 51.9 9.1 123 5-146 2-125 (307)
65 pfam03807 F420_oxidored NADP o 97.9 0.00012 3E-09 50.3 8.8 92 5-121 1-92 (93)
66 COG1893 ApbA Ketopantoate redu 97.8 8.6E-05 2.2E-09 51.2 7.3 118 4-143 1-121 (307)
67 PRK12439 NAD(P)H-dependent gly 97.8 0.0003 7.7E-09 47.7 10.0 72 2-79 5-84 (340)
68 PRK08229 2-dehydropantoate 2-r 97.8 0.00013 3.3E-09 50.0 7.9 121 4-144 3-128 (341)
69 PRK06249 2-dehydropantoate 2-r 97.8 0.00018 4.7E-09 49.1 8.6 121 2-147 4-130 (313)
70 COG2085 Predicted dinucleotide 97.8 0.0004 1E-08 46.8 10.2 121 4-152 2-138 (211)
71 PRK00094 gpsA NAD(P)H-dependen 97.7 0.00057 1.5E-08 45.9 10.3 114 4-134 2-124 (325)
72 pfam02719 Polysacc_synt_2 Poly 97.7 0.0044 1.1E-07 40.1 14.5 218 6-249 1-242 (280)
73 TIGR03376 glycerol3P_DH glycer 97.7 0.0024 6.2E-08 41.8 13.0 100 5-120 1-116 (342)
74 KOG2666 consensus 97.7 0.0022 5.5E-08 42.1 12.7 155 4-161 2-227 (481)
75 PRK08507 prephenate dehydrogen 97.7 0.00053 1.4E-08 46.1 9.3 88 5-119 2-90 (275)
76 PRK07417 arogenate dehydrogena 97.6 0.00053 1.3E-08 46.1 8.9 89 4-119 2-91 (280)
77 pfam01488 Shikimate_DH Shikima 97.6 0.00038 9.6E-09 47.0 8.0 105 2-128 11-116 (134)
78 PRK07502 cyclohexadienyl dehyd 97.6 0.00064 1.6E-08 45.5 8.9 90 4-119 7-99 (307)
79 PRK05708 2-dehydropantoate 2-r 97.6 0.00059 1.5E-08 45.8 8.5 125 3-147 2-128 (305)
80 TIGR02354 thiF_fam2 thiamine b 97.6 0.00053 1.4E-08 46.1 8.2 105 1-120 19-144 (200)
81 COG0240 GpsA Glycerol-3-phosph 97.5 0.0041 1.1E-07 40.3 11.7 115 3-134 1-124 (329)
82 TIGR02279 PaaC-3OHAcCoADH 3-hy 97.4 0.00029 7.4E-09 47.7 5.3 227 2-275 4-264 (508)
83 TIGR01915 npdG NADPH-dependent 97.4 0.0032 8.1E-08 41.0 10.3 152 5-178 2-180 (233)
84 PRK12921 2-dehydropantoate 2-r 97.4 0.0015 3.9E-08 43.1 8.6 121 5-147 2-126 (306)
85 COG0373 HemA Glutamyl-tRNA red 97.4 0.0011 2.8E-08 44.0 7.6 104 2-128 177-282 (414)
86 TIGR03589 PseB UDP-N-acetylglu 97.4 0.0048 1.2E-07 39.9 10.8 223 1-249 2-243 (324)
87 COG1086 Predicted nucleoside-d 97.3 0.0034 8.6E-08 40.9 9.9 222 2-246 249-491 (588)
88 TIGR00745 apbA_panE 2-dehydrop 97.3 0.0016 4E-08 43.0 8.1 171 5-204 1-181 (332)
89 PRK07634 pyrroline-5-carboxyla 97.3 0.0018 4.5E-08 42.7 8.1 68 1-79 2-74 (245)
90 PRK06476 pyrroline-5-carboxyla 97.3 0.0035 9E-08 40.7 9.5 91 5-121 2-94 (255)
91 PRK00258 aroE shikimate 5-dehy 97.3 0.0079 2E-07 38.5 11.0 131 2-157 121-254 (275)
92 cd01065 NAD_bind_Shikimate_DH 97.2 0.0015 3.8E-08 43.1 7.1 133 1-155 17-150 (155)
93 PRK06046 alanine dehydrogenase 97.2 0.0029 7.4E-08 41.3 8.3 72 3-79 129-201 (326)
94 cd05213 NAD_bind_Glutamyl_tRNA 97.2 0.00097 2.5E-08 44.4 5.8 42 3-44 178-219 (311)
95 PRK00045 hemA glutamyl-tRNA re 97.2 0.0011 2.7E-08 44.1 5.9 105 2-127 181-287 (429)
96 COG0677 WecC UDP-N-acetyl-D-ma 97.2 0.0076 1.9E-07 38.6 10.1 126 4-137 10-150 (436)
97 PRK13304 L-aspartate dehydroge 97.2 0.0041 1E-07 40.3 8.6 121 4-154 2-132 (265)
98 pfam02423 OCD_Mu_crystall Orni 97.1 0.0047 1.2E-07 39.9 8.5 73 3-81 129-203 (312)
99 TIGR01035 hemA glutamyl-tRNA r 97.1 0.0017 4.3E-08 42.8 6.1 114 1-127 183-300 (436)
100 PRK08291 ornithine cyclodeamin 97.0 0.0046 1.2E-07 40.0 7.9 72 3-79 132-205 (330)
101 PRK13303 L-aspartate dehydroge 97.0 0.01 2.6E-07 37.8 9.5 122 4-153 2-131 (265)
102 COG1712 Predicted dinucleotide 97.0 0.0066 1.7E-07 39.0 8.6 104 5-135 2-112 (255)
103 PRK11880 pyrroline-5-carboxyla 97.0 0.003 7.8E-08 41.1 6.8 67 3-79 2-70 (267)
104 PRK08251 short chain dehydroge 97.0 0.025 6.5E-07 35.2 11.5 115 2-120 1-139 (248)
105 PRK12491 pyrroline-5-carboxyla 97.0 0.0034 8.6E-08 40.8 7.0 67 3-79 2-71 (272)
106 pfam02558 ApbA Ketopantoate re 97.0 0.0078 2E-07 38.5 8.9 121 6-147 1-124 (150)
107 TIGR03466 HpnA hopanoid-associ 97.0 0.018 4.5E-07 36.2 10.6 103 5-118 2-111 (328)
108 cd00757 ThiF_MoeB_HesA_family 97.0 0.0018 4.5E-08 42.7 5.3 128 1-178 19-150 (228)
109 PRK06545 prephenate dehydrogen 97.0 0.007 1.8E-07 38.8 8.4 66 4-79 1-68 (357)
110 KOG2304 consensus 96.9 0.0037 9.5E-08 40.6 6.8 107 3-125 11-135 (298)
111 PRK13302 putative L-aspartate 96.9 0.0097 2.5E-07 37.9 8.9 122 2-153 5-134 (271)
112 PRK05690 molybdopterin biosynt 96.9 0.001 2.7E-08 44.2 3.9 132 1-179 30-162 (245)
113 PRK02472 murD UDP-N-acetylmura 96.9 0.0094 2.4E-07 38.0 8.7 128 1-138 7-141 (450)
114 PRK06199 ornithine cyclodeamin 96.9 0.0066 1.7E-07 38.9 7.8 75 3-80 155-232 (379)
115 PRK07679 pyrroline-5-carboxyla 96.9 0.0034 8.5E-08 40.9 6.2 70 1-79 1-73 (279)
116 PRK13940 glutamyl-tRNA reducta 96.9 0.0029 7.3E-08 41.3 5.9 100 2-127 180-280 (414)
117 PRK08324 short chain dehydroge 96.9 0.0085 2.2E-07 38.3 8.1 112 5-120 422-556 (676)
118 PRK12549 shikimate 5-dehydroge 96.8 0.006 1.5E-07 39.2 7.2 74 2-79 126-200 (284)
119 PRK08644 thiamine biosynthesis 96.8 0.0052 1.3E-07 39.6 6.7 128 1-177 25-155 (209)
120 PRK12548 shikimate 5-dehydroge 96.8 0.041 1.1E-06 33.8 11.3 37 3-39 9-50 (289)
121 PRK08040 putative semialdehyde 96.8 0.01 2.6E-07 37.7 8.2 71 2-81 3-76 (337)
122 pfam03435 Saccharop_dh Sacchar 96.8 0.0059 1.5E-07 39.3 6.9 72 6-81 1-77 (384)
123 PRK07680 late competence prote 96.8 0.0045 1.1E-07 40.0 6.3 67 5-80 2-71 (273)
124 PRK09496 trkA potassium transp 96.8 0.0013 3.3E-08 43.5 3.4 66 5-78 2-72 (455)
125 PRK12384 sorbitol-6-phosphate 96.8 0.048 1.2E-06 33.3 11.4 117 4-121 2-141 (259)
126 PRK08223 hypothetical protein; 96.8 0.0015 3.7E-08 43.2 3.6 149 1-201 25-176 (287)
127 pfam00899 ThiF ThiF family. Th 96.8 0.0088 2.2E-07 38.1 7.5 35 3-37 1-35 (134)
128 PRK12475 thiamine/molybdopteri 96.8 0.0028 7.3E-08 41.3 5.0 36 1-36 22-57 (337)
129 PRK06141 ornithine cyclodeamin 96.7 0.0097 2.5E-07 37.9 7.7 76 3-85 125-202 (313)
130 PRK08618 ornithine cyclodeamin 96.7 0.011 2.8E-07 37.5 7.9 73 3-80 127-201 (325)
131 COG1064 AdhP Zn-dependent alco 96.7 0.015 3.8E-07 36.7 8.3 129 3-160 167-302 (339)
132 PRK12749 quinate/shikimate deh 96.7 0.054 1.4E-06 33.0 11.1 36 3-38 124-159 (288)
133 PRK11908 NAD-dependent epimera 96.7 0.06 1.5E-06 32.7 11.5 182 4-195 2-212 (347)
134 COG0169 AroE Shikimate 5-dehyd 96.7 0.041 1E-06 33.8 10.4 129 3-152 126-257 (283)
135 PRK07454 short chain dehydroge 96.6 0.064 1.6E-06 32.6 12.2 116 1-120 3-141 (241)
136 PRK07589 ornithine cyclodeamin 96.6 0.015 3.8E-07 36.7 8.0 71 3-79 129-201 (346)
137 PRK05671 aspartate-semialdehyd 96.6 0.0098 2.5E-07 37.8 7.0 71 1-80 1-75 (336)
138 PRK01710 murD UDP-N-acetylmura 96.6 0.062 1.6E-06 32.7 11.1 126 1-137 12-145 (458)
139 PRK06928 pyrroline-5-carboxyla 96.6 0.012 3.2E-07 37.2 7.5 97 4-127 2-104 (275)
140 PRK08762 molybdopterin biosynt 96.6 0.0074 1.9E-07 38.6 6.3 36 2-37 137-172 (379)
141 COG0345 ProC Pyrroline-5-carbo 96.6 0.039 1E-06 33.9 10.0 95 4-125 2-100 (266)
142 PRK12862 malic enzyme; Reviewe 96.6 0.0036 9.1E-08 40.7 4.5 111 3-133 192-305 (761)
143 cd01492 Aos1_SUMO Ubiquitin ac 96.6 0.012 3.1E-07 37.2 7.3 130 1-177 19-148 (197)
144 PRK09496 trkA potassium transp 96.6 0.0028 7.3E-08 41.3 4.0 166 2-197 231-399 (455)
145 PRK08643 acetoin reductase; Va 96.6 0.033 8.5E-07 34.4 9.4 114 4-120 2-138 (256)
146 PRK07411 hypothetical protein; 96.5 0.0038 9.7E-08 40.5 4.5 34 2-35 37-70 (390)
147 PRK08655 prephenate dehydrogen 96.5 0.007 1.8E-07 38.8 5.8 65 5-80 2-67 (441)
148 cd01487 E1_ThiF_like E1_ThiF_l 96.5 0.012 3E-07 37.3 6.9 135 5-187 1-137 (174)
149 TIGR02371 ala_DH_arch alanine 96.5 0.0071 1.8E-07 38.7 5.8 100 3-111 129-255 (327)
150 PRK05855 short chain dehydroge 96.5 0.023 5.9E-07 35.4 8.3 213 3-257 314-555 (582)
151 COG0569 TrkA K+ transport syst 96.5 0.0032 8E-08 41.0 3.8 158 4-198 1-170 (225)
152 PRK06407 ornithine cyclodeamin 96.5 0.017 4.5E-07 36.2 7.5 74 3-81 118-193 (302)
153 PRK00421 murC UDP-N-acetylmura 96.5 0.027 6.9E-07 35.0 8.5 129 3-143 8-142 (459)
154 PRK06823 ornithine cyclodeamin 96.5 0.015 3.8E-07 36.7 7.1 71 3-79 128-200 (315)
155 cd01078 NAD_bind_H4MPT_DH NADP 96.5 0.019 4.7E-07 36.0 7.6 75 1-79 26-105 (194)
156 PRK05597 molybdopterin biosynt 96.4 0.0043 1.1E-07 40.1 4.3 36 1-36 26-61 (355)
157 pfam02826 2-Hacid_dh_C D-isome 96.4 0.034 8.6E-07 34.4 8.8 114 1-145 34-148 (176)
158 PRK07232 malic enzyme; Reviewe 96.4 0.0067 1.7E-07 38.9 5.2 111 2-133 185-299 (753)
159 PRK02006 murD UDP-N-acetylmura 96.4 0.087 2.2E-06 31.7 11.4 130 1-137 5-150 (501)
160 PRK06598 aspartate-semialdehyd 96.4 0.0082 2.1E-07 38.4 5.6 70 3-81 2-74 (348)
161 PRK07832 short chain dehydroge 96.4 0.09 2.3E-06 31.6 11.3 211 4-256 1-239 (272)
162 PRK07878 molybdopterin biosynt 96.4 0.0041 1E-07 40.3 3.7 35 2-36 41-75 (392)
163 PRK13301 putative L-aspartate 96.3 0.043 1.1E-06 33.7 8.9 120 3-153 2-132 (267)
164 PRK08217 fabG 3-ketoacyl-(acyl 96.3 0.097 2.5E-06 31.4 11.4 118 1-121 3-151 (253)
165 PRK08269 3-hydroxybutyryl-CoA 96.3 0.01 2.6E-07 37.7 5.6 134 15-165 2-175 (311)
166 PRK03806 murD UDP-N-acetylmura 96.3 0.077 2E-06 32.0 10.0 124 2-137 5-133 (438)
167 PRK01438 murD UDP-N-acetylmura 96.3 0.045 1.1E-06 33.5 8.7 128 2-138 13-151 (481)
168 PRK04690 murD UDP-N-acetylmura 96.3 0.028 7.1E-07 34.9 7.7 97 1-105 6-102 (468)
169 cd01483 E1_enzyme_family Super 96.3 0.024 6.1E-07 35.3 7.2 33 5-37 1-33 (143)
170 PRK05600 thiamine biosynthesis 96.2 0.0048 1.2E-07 39.9 3.5 36 1-36 39-74 (370)
171 COG1063 Tdh Threonine dehydrog 96.2 0.037 9.4E-07 34.1 8.0 93 5-122 171-271 (350)
172 PRK07102 short chain dehydroge 96.2 0.099 2.5E-06 31.3 10.2 114 4-120 2-134 (243)
173 PRK05786 fabG 3-ketoacyl-(acyl 96.2 0.076 1.9E-06 32.1 9.6 108 1-109 3-127 (238)
174 PRK08328 hypothetical protein; 96.2 0.0071 1.8E-07 38.8 4.3 37 1-37 25-61 (230)
175 PRK09330 cell division protein 96.2 0.026 6.7E-07 35.1 7.2 109 3-125 12-139 (387)
176 PRK00141 murD UDP-N-acetylmura 96.2 0.036 9.1E-07 34.2 7.8 125 4-138 18-152 (476)
177 PRK08664 aspartate-semialdehyd 96.2 0.032 8.1E-07 34.5 7.5 79 1-80 1-85 (350)
178 COG0287 TyrA Prephenate dehydr 96.2 0.054 1.4E-06 33.1 8.7 95 2-120 2-98 (279)
179 PRK07024 short chain dehydroge 96.2 0.1 2.6E-06 31.2 10.1 112 3-120 2-136 (256)
180 PRK07340 ornithine cyclodeamin 96.2 0.031 8E-07 34.6 7.4 72 3-80 125-197 (304)
181 PRK07074 short chain dehydroge 96.2 0.11 2.8E-06 31.0 10.2 113 3-121 1-135 (256)
182 COG2084 MmsB 3-hydroxyisobutyr 96.1 0.058 1.5E-06 32.8 8.7 67 4-81 1-67 (286)
183 TIGR03366 HpnZ_proposed putati 96.1 0.021 5.3E-07 35.7 6.3 44 114-163 123-166 (280)
184 pfam03446 NAD_binding_2 NAD bi 96.1 0.021 5.5E-07 35.6 6.3 64 4-80 2-66 (163)
185 PRK12429 3-hydroxybutyrate deh 96.1 0.1 2.6E-06 31.3 9.7 118 1-120 1-139 (258)
186 TIGR03451 mycoS_dep_FDH mycoth 96.1 0.059 1.5E-06 32.8 8.5 42 116-163 181-222 (358)
187 cd01491 Ube1_repeat1 Ubiquitin 96.0 0.087 2.2E-06 31.7 9.1 37 1-37 17-53 (286)
188 PRK00683 murD UDP-N-acetylmura 96.0 0.066 1.7E-06 32.5 8.4 122 1-137 1-130 (418)
189 PRK12550 shikimate 5-dehydroge 96.0 0.11 2.8E-06 31.0 9.5 128 3-157 122-252 (272)
190 PRK00436 argC N-acetyl-gamma-g 96.0 0.047 1.2E-06 33.4 7.6 75 4-81 2-78 (345)
191 COG1052 LdhA Lactate dehydroge 96.0 0.087 2.2E-06 31.7 8.9 91 2-120 145-236 (324)
192 PRK06728 aspartate-semialdehyd 96.0 0.041 1.1E-06 33.8 7.2 71 2-81 4-78 (347)
193 cd00755 YgdL_like Family of ac 95.9 0.013 3.4E-07 37.0 4.4 37 1-37 9-45 (231)
194 PRK01390 murD UDP-N-acetylmura 95.9 0.12 3E-06 30.9 9.2 124 2-137 8-142 (457)
195 pfam01073 3Beta_HSD 3-beta hyd 95.9 0.12 2.9E-06 30.9 9.2 102 8-116 2-112 (280)
196 PRK09072 short chain dehydroge 95.9 0.094 2.4E-06 31.5 8.7 114 1-120 3-137 (262)
197 PRK07231 fabG 3-ketoacyl-(acyl 95.8 0.07 1.8E-06 32.3 7.9 116 2-120 5-140 (250)
198 pfam02254 TrkA_N TrkA-N domain 95.8 0.02 5.2E-07 35.8 5.1 94 6-125 1-101 (115)
199 PRK07688 thiamine/molybdopteri 95.8 0.014 3.6E-07 36.8 4.3 36 1-36 22-57 (339)
200 PRK06720 hypothetical protein; 95.8 0.14 3.6E-06 30.3 9.4 115 4-120 16-149 (169)
201 PRK08340 glucose-1-dehydrogena 95.8 0.14 3.5E-06 30.4 9.3 115 5-120 2-137 (259)
202 COG0673 MviM Predicted dehydro 95.8 0.037 9.5E-07 34.1 6.3 69 1-79 1-75 (342)
203 cd05312 NAD_bind_1_malic_enz N 95.8 0.019 4.8E-07 36.0 4.8 128 3-148 25-169 (279)
204 pfam03949 Malic_M Malic enzyme 95.8 0.046 1.2E-06 33.5 6.8 131 3-150 25-172 (255)
205 KOG1502 consensus 95.8 0.18 4.6E-06 29.6 10.5 169 3-175 6-197 (327)
206 COG2423 Predicted ornithine cy 95.7 0.056 1.4E-06 32.9 7.1 71 4-79 131-203 (330)
207 PRK07208 hypothetical protein; 95.7 0.014 3.5E-07 36.9 3.8 63 1-65 1-63 (474)
208 TIGR02440 FadJ fatty oxidation 95.7 0.043 1.1E-06 33.7 6.3 104 4-122 308-423 (732)
209 COG0300 DltE Short-chain dehyd 95.7 0.11 2.8E-06 31.0 8.4 162 1-185 4-195 (265)
210 cd01484 E1-2_like Ubiquitin ac 95.6 0.021 5.3E-07 35.7 4.6 129 5-181 1-133 (234)
211 cd00762 NAD_bind_malic_enz NAD 95.6 0.053 1.4E-06 33.1 6.7 132 3-151 25-173 (254)
212 pfam11975 Glyco_hydro_4C Famil 95.6 0.16 4E-06 30.0 9.0 83 227-314 131-215 (231)
213 PRK03369 murD UDP-N-acetylmura 95.6 0.1 2.7E-06 31.2 8.1 124 2-138 11-146 (487)
214 PRK04308 murD UDP-N-acetylmura 95.5 0.12 3E-06 30.8 8.2 136 1-147 3-148 (445)
215 PRK07041 short chain dehydroge 95.5 0.2 5.2E-06 29.3 9.4 117 2-120 6-133 (240)
216 TIGR02964 xanthine_xdhC xanthi 95.5 0.067 1.7E-06 32.4 6.8 122 3-169 115-242 (270)
217 PRK08300 acetaldehyde dehydrog 95.5 0.076 1.9E-06 32.1 7.0 110 1-125 2-115 (298)
218 PRK09880 L-idonate 5-dehydroge 95.4 0.15 3.8E-06 30.1 8.4 35 5-39 172-206 (343)
219 KOG1205 consensus 95.4 0.24 6E-06 28.9 11.2 146 2-155 11-181 (282)
220 PRK05599 hypothetical protein; 95.4 0.19 4.8E-06 29.5 8.9 113 5-120 2-136 (246)
221 PRK12861 malic enzyme; Reviewe 95.4 0.023 5.9E-07 35.4 4.2 110 2-133 186-300 (762)
222 cd02201 FtsZ_type1 FtsZ is a G 95.4 0.082 2.1E-06 31.9 7.0 105 4-124 1-126 (304)
223 PRK13018 cell division protein 95.4 0.23 5.8E-06 29.0 9.2 78 3-83 27-123 (387)
224 cd05311 NAD_bind_2_malic_enz N 95.4 0.17 4.3E-06 29.8 8.6 116 2-145 24-150 (226)
225 COG0136 Asd Aspartate-semialde 95.4 0.11 2.7E-06 31.1 7.5 71 3-81 1-76 (334)
226 PRK11559 garR tartronate semia 95.4 0.056 1.4E-06 32.9 6.1 63 4-79 2-65 (295)
227 PRK11150 rfaD ADP-L-glycero-D- 95.3 0.077 2E-06 32.0 6.7 160 6-176 2-174 (308)
228 PRK07201 short chain dehydroge 95.3 0.19 4.8E-06 29.5 8.6 218 5-262 377-635 (663)
229 TIGR02632 RhaD_aldol-ADH rhamn 95.3 0.13 3.3E-06 30.5 7.8 225 4-256 424-699 (709)
230 PRK12480 D-lactate dehydrogena 95.3 0.21 5.2E-06 29.3 8.7 31 4-36 147-178 (330)
231 PRK08125 bifunctional UDP-gluc 95.3 0.13 3.2E-06 30.6 7.6 96 3-109 315-426 (660)
232 PRK05876 short chain dehydroge 95.3 0.26 6.7E-06 28.6 10.5 114 4-120 6-142 (275)
233 PRK06346 consensus 95.3 0.27 6.8E-06 28.5 10.0 117 2-120 4-141 (251)
234 PRK06487 glycerate dehydrogena 95.2 0.2 5.1E-06 29.4 8.5 30 221-250 218-251 (317)
235 PRK07236 hypothetical protein; 95.2 0.035 9E-07 34.2 4.7 36 1-37 4-39 (386)
236 KOG1430 consensus 95.2 0.17 4.3E-06 29.8 8.1 105 1-112 2-118 (361)
237 PRK05650 short chain dehydroge 95.2 0.28 7.1E-06 28.4 10.5 113 4-120 1-135 (270)
238 PRK06181 short chain dehydroge 95.2 0.26 6.6E-06 28.6 9.0 111 5-120 2-136 (263)
239 PRK10675 UDP-galactose-4-epime 95.2 0.28 7.2E-06 28.4 11.9 111 5-120 2-123 (338)
240 PRK11749 putative oxidoreducta 95.2 0.2 5.1E-06 29.4 8.4 80 2-82 139-236 (460)
241 PRK07775 short chain dehydroge 95.2 0.25 6.3E-06 28.7 8.8 113 3-120 9-145 (275)
242 PRK08410 2-hydroxyacid dehydro 95.1 0.25 6.3E-06 28.8 8.8 29 5-35 2-30 (311)
243 PRK05653 fabG 3-ketoacyl-(acyl 95.1 0.29 7.4E-06 28.3 11.9 115 2-120 4-140 (246)
244 PRK06940 short chain dehydroge 95.1 0.29 7.4E-06 28.3 10.6 76 3-84 4-92 (277)
245 pfam01118 Semialdhyde_dh Semia 95.1 0.075 1.9E-06 32.1 6.1 74 5-81 1-76 (121)
246 PRK07060 short chain dehydroge 95.1 0.24 6.2E-06 28.8 8.7 114 2-120 8-136 (245)
247 PRK01747 mnmC 5-methylaminomet 95.1 0.038 9.6E-07 34.0 4.5 38 2-40 255-292 (660)
248 PRK07814 short chain dehydroge 95.1 0.2 5.2E-06 29.3 8.2 113 3-120 9-146 (263)
249 PRK05867 short chain dehydroge 95.1 0.31 7.9E-06 28.1 10.1 118 2-120 8-145 (253)
250 KOG2711 consensus 95.0 0.31 7.9E-06 28.1 10.2 124 1-139 19-167 (372)
251 cd01488 Uba3_RUB Ubiquitin act 95.0 0.1 2.6E-06 31.2 6.5 32 5-36 1-32 (291)
252 PRK13529 malate dehydrogenase; 95.0 0.32 8.2E-06 28.0 9.1 131 3-150 295-448 (563)
253 PRK06194 hypothetical protein; 95.0 0.33 8.3E-06 28.0 10.9 165 4-188 6-205 (301)
254 cd01485 E1-1_like Ubiquitin ac 95.0 0.039 9.9E-07 34.0 4.3 134 1-177 17-151 (198)
255 COG1179 Dinucleotide-utilizing 94.9 0.038 9.8E-07 34.0 4.1 37 1-37 28-64 (263)
256 PRK12770 putative glutamate sy 94.9 0.25 6.4E-06 28.7 8.2 32 3-35 17-48 (350)
257 PRK05472 redox-sensing transcr 94.9 0.17 4.3E-06 29.8 7.3 67 2-79 83-154 (211)
258 PRK09134 short chain dehydroge 94.9 0.35 8.8E-06 27.8 9.4 119 1-120 6-145 (256)
259 PRK08605 D-lactate dehydrogena 94.8 0.22 5.5E-06 29.1 7.7 10 241-250 245-254 (332)
260 PRK11790 D-3-phosphoglycerate 94.8 0.21 5.4E-06 29.2 7.6 89 2-120 150-239 (409)
261 PRK05396 tdh L-threonine 3-deh 94.8 0.3 7.6E-06 28.2 8.4 46 113-164 165-210 (341)
262 TIGR00065 ftsZ cell division p 94.7 0.16 4.2E-06 29.9 6.9 109 3-125 17-149 (365)
263 PRK09599 6-phosphogluconate de 94.7 0.32 8.2E-06 28.0 8.4 38 5-43 2-39 (301)
264 PRK06057 short chain dehydroge 94.7 0.38 9.8E-06 27.5 11.6 110 5-120 8-139 (255)
265 pfam01262 AlaDh_PNT_C Alanine 94.7 0.11 2.8E-06 31.0 6.0 72 2-82 19-95 (150)
266 PRK13984 putative oxidoreducta 94.7 0.3 7.7E-06 28.2 8.2 79 3-82 283-379 (604)
267 COG0281 SfcA Malic enzyme [Ene 94.6 0.11 2.8E-06 31.0 5.9 114 1-134 197-315 (432)
268 PRK04663 murD UDP-N-acetylmura 94.6 0.39 1E-05 27.4 10.3 123 4-138 8-137 (438)
269 PRK11579 putative oxidoreducta 94.6 0.077 2E-06 32.0 5.1 65 1-79 1-72 (346)
270 PRK07666 fabG 3-ketoacyl-(acyl 94.6 0.4 1E-05 27.4 10.5 116 2-121 5-142 (238)
271 PRK06139 short chain dehydroge 94.6 0.4 1E-05 27.4 10.0 152 4-168 6-184 (324)
272 PRK06153 hypothetical protein; 94.6 0.091 2.3E-06 31.6 5.4 36 2-37 175-210 (393)
273 PRK12829 short chain dehydroge 94.5 0.41 1.1E-05 27.3 8.7 113 4-121 11-147 (264)
274 TIGR02356 adenyl_thiF thiazole 94.5 0.043 1.1E-06 33.7 3.6 142 1-185 19-161 (210)
275 PRK07890 short chain dehydroge 94.5 0.42 1.1E-05 27.2 10.3 117 2-121 4-141 (258)
276 PRK08945 short chain dehydroge 94.5 0.43 1.1E-05 27.2 11.5 116 1-121 11-153 (245)
277 PRK06847 hypothetical protein; 94.4 0.085 2.2E-06 31.7 4.9 35 3-38 4-38 (375)
278 PRK11728 hypothetical protein; 94.4 0.44 1.1E-05 27.1 8.8 95 5-125 4-100 (400)
279 PRK10217 dTDP-glucose 4,6-dehy 94.3 0.43 1.1E-05 27.2 8.4 191 4-197 2-217 (355)
280 PRK06436 glycerate dehydrogena 94.3 0.46 1.2E-05 27.0 10.1 33 2-35 121-153 (303)
281 PRK06198 short chain dehydroge 94.3 0.46 1.2E-05 27.0 9.9 113 4-120 6-143 (268)
282 COG2910 Putative NADH-flavin r 94.3 0.38 9.6E-06 27.5 8.0 71 4-83 1-74 (211)
283 PRK12824 acetoacetyl-CoA reduc 94.3 0.46 1.2E-05 27.0 10.6 112 4-120 2-138 (245)
284 COG4221 Short-chain alcohol de 94.3 0.46 1.2E-05 27.0 8.7 111 4-120 6-139 (246)
285 TIGR00978 asd_EA aspartate-sem 94.3 0.35 9E-06 27.7 7.9 224 5-296 2-266 (358)
286 cd02191 FtsZ FtsZ is a GTPase 94.3 0.26 6.5E-06 28.6 7.1 99 4-124 1-126 (303)
287 COG0565 LasT rRNA methylase [T 94.3 0.47 1.2E-05 26.9 9.1 81 3-87 4-88 (242)
288 pfam01408 GFO_IDH_MocA Oxidore 94.2 0.15 3.7E-06 30.2 5.8 64 5-79 2-70 (120)
289 PRK06180 short chain dehydroge 94.2 0.39 9.9E-06 27.5 8.0 113 1-120 1-136 (277)
290 PRK12810 gltD glutamate syntha 94.2 0.42 1.1E-05 27.2 8.1 79 3-82 143-239 (472)
291 PRK09288 purT phosphoribosylgl 94.2 0.48 1.2E-05 26.8 8.6 43 3-46 12-54 (395)
292 TIGR02441 fa_ox_alpha_mit fatt 94.1 0.0026 6.7E-08 41.6 -3.3 74 4-78 338-423 (740)
293 COG1206 Gid NAD(FAD)-utilizing 94.1 0.34 8.7E-06 27.8 7.5 136 1-137 1-155 (439)
294 pfam10727 Rossmann-like Rossma 94.1 0.32 8.1E-06 28.0 7.3 62 7-79 1-62 (111)
295 PRK12826 3-ketoacyl-(acyl-carr 94.1 0.51 1.3E-05 26.7 11.9 114 3-120 6-141 (253)
296 PRK07067 sorbitol dehydrogenas 94.1 0.51 1.3E-05 26.7 9.8 114 4-120 5-138 (256)
297 KOG1208 consensus 94.1 0.51 1.3E-05 26.7 9.7 154 5-163 36-217 (314)
298 PRK08219 short chain dehydroge 94.0 0.53 1.4E-05 26.6 8.7 112 1-120 1-127 (226)
299 KOG0069 consensus 94.0 0.23 5.8E-06 29.0 6.4 146 2-189 161-307 (336)
300 COG0771 MurD UDP-N-acetylmuram 94.0 0.54 1.4E-05 26.6 9.6 134 2-145 6-148 (448)
301 PRK05866 short chain dehydroge 94.0 0.54 1.4E-05 26.5 10.5 112 5-120 41-177 (290)
302 COG2344 AT-rich DNA-binding pr 94.0 0.24 6.2E-06 28.8 6.5 97 2-127 83-184 (211)
303 PRK12409 D-amino acid dehydrog 93.9 0.11 2.9E-06 30.9 4.7 33 4-37 2-34 (410)
304 COG0665 DadA Glycine/D-amino a 93.9 0.13 3.4E-06 30.5 5.1 37 1-38 2-38 (387)
305 PRK00711 D-amino acid dehydrog 93.9 0.096 2.4E-06 31.4 4.3 32 5-37 2-33 (416)
306 PRK05872 short chain dehydroge 93.9 0.53 1.3E-05 26.6 8.1 112 4-120 9-140 (296)
307 cd01075 NAD_bind_Leu_Phe_Val_D 93.9 0.19 5E-06 29.4 5.9 116 1-148 26-147 (200)
308 PRK06179 short chain dehydroge 93.9 0.14 3.4E-06 30.4 5.0 111 1-120 1-131 (270)
309 PRK08862 short chain dehydroge 93.9 0.57 1.4E-05 26.4 11.8 115 1-120 3-143 (227)
310 PRK01368 murD UDP-N-acetylmura 93.8 0.33 8.5E-06 27.9 7.0 123 2-138 5-133 (450)
311 PRK07326 short chain dehydroge 93.8 0.58 1.5E-05 26.4 9.6 113 5-120 6-138 (235)
312 cd05212 NAD_bind_m-THF_DH_Cycl 93.8 0.36 9.3E-06 27.6 7.1 56 1-83 26-83 (140)
313 PRK07707 consensus 93.8 0.54 1.4E-05 26.5 8.0 114 4-120 2-133 (239)
314 TIGR01296 asd_B aspartate-semi 93.8 0.046 1.2E-06 33.5 2.5 69 5-82 1-75 (350)
315 PRK12769 putative oxidoreducta 93.8 0.54 1.4E-05 26.5 8.0 79 3-82 327-423 (654)
316 pfam04016 DUF364 Domain of unk 93.7 0.23 5.8E-06 29.0 6.0 11 69-79 160-170 (229)
317 PRK12771 putative glutamate sy 93.7 0.6 1.5E-05 26.2 8.3 79 3-82 137-233 (560)
318 pfam03059 NAS Nicotianamine sy 93.7 0.61 1.5E-05 26.2 9.1 11 5-15 124-134 (277)
319 TIGR01850 argC N-acetyl-gamma- 93.6 0.18 4.7E-06 29.6 5.4 74 4-79 1-82 (361)
320 PRK07825 short chain dehydroge 93.6 0.62 1.6E-05 26.1 9.0 115 1-120 3-136 (273)
321 TIGR01809 Shik-DH-AROM shikima 93.6 0.45 1.1E-05 27.1 7.3 135 6-155 133-274 (291)
322 cd01489 Uba2_SUMO Ubiquitin ac 93.6 0.12 3.2E-06 30.7 4.4 32 5-36 1-32 (312)
323 PRK07856 short chain dehydroge 93.6 0.2 5.2E-06 29.3 5.5 118 2-120 7-135 (254)
324 COG0002 ArgC Acetylglutamate s 93.6 0.22 5.7E-06 29.0 5.7 73 2-79 1-78 (349)
325 PRK05875 short chain dehydroge 93.6 0.64 1.6E-05 26.1 8.4 116 2-120 6-146 (277)
326 PRK07479 consensus 93.5 0.66 1.7E-05 26.0 8.9 115 2-120 4-141 (252)
327 PRK06138 short chain dehydroge 93.5 0.66 1.7E-05 26.0 10.1 112 4-120 5-139 (252)
328 PRK05703 flhF flagellar biosyn 93.5 0.66 1.7E-05 26.0 11.8 136 3-152 210-359 (412)
329 PRK06125 short chain dehydroge 93.5 0.66 1.7E-05 26.0 11.9 114 2-120 6-139 (259)
330 TIGR03215 ac_ald_DH_ac acetald 93.4 0.35 9E-06 27.7 6.6 108 3-125 1-109 (285)
331 PRK08849 2-octaprenyl-3-methyl 93.4 0.17 4.4E-06 29.8 4.9 35 1-36 1-35 (384)
332 PRK07574 formate dehydrogenase 93.4 0.48 1.2E-05 26.9 7.1 11 68-78 87-97 (385)
333 TIGR01829 AcAcCoA_reduct aceto 93.4 0.21 5.4E-06 29.2 5.3 81 5-95 1-97 (244)
334 PRK06200 2,3-dihydroxy-2,3-dih 93.3 0.7 1.8E-05 25.8 9.2 115 2-120 5-143 (263)
335 PRK08703 short chain dehydroge 93.3 0.7 1.8E-05 25.8 12.5 118 1-120 4-146 (239)
336 cd01493 APPBP1_RUB Ubiquitin a 93.3 0.71 1.8E-05 25.8 7.9 36 1-36 18-53 (425)
337 PRK12814 putative NADPH-depend 93.3 0.6 1.5E-05 26.2 7.5 80 3-83 193-290 (652)
338 PRK07045 putative monooxygenas 93.2 0.19 4.8E-06 29.5 4.9 36 1-37 1-38 (388)
339 PRK10083 putative dehydrogenas 93.2 0.72 1.8E-05 25.7 8.9 43 116-164 165-208 (339)
340 PRK07677 short chain dehydroge 93.2 0.73 1.9E-05 25.7 9.5 115 1-120 1-139 (254)
341 PRK07831 short chain dehydroge 93.2 0.74 1.9E-05 25.7 11.3 117 3-120 15-155 (261)
342 pfam02629 CoA_binding CoA bind 93.1 0.75 1.9E-05 25.6 8.6 88 2-118 2-93 (96)
343 COG0111 SerA Phosphoglycerate 93.1 0.51 1.3E-05 26.7 6.9 18 4-21 143-160 (324)
344 pfam01370 Epimerase NAD depend 93.1 0.77 2E-05 25.6 10.7 158 6-176 1-174 (235)
345 cd05191 NAD_bind_amino_acid_DH 93.0 0.31 8E-06 28.1 5.7 34 2-35 22-55 (86)
346 PRK12809 putative oxidoreducta 93.0 0.79 2E-05 25.5 8.4 79 3-81 310-405 (639)
347 TIGR02197 heptose_epim ADP-L-g 93.0 0.35 9E-06 27.7 6.0 113 6-120 1-130 (353)
348 PRK12490 6-phosphogluconate de 92.9 0.62 1.6E-05 26.2 7.1 37 5-42 2-38 (298)
349 PRK07062 short chain dehydroge 92.9 0.81 2.1E-05 25.4 10.6 115 4-120 8-145 (265)
350 PRK11199 tyrA bifunctional cho 92.8 0.83 2.1E-05 25.3 8.9 83 3-126 98-185 (374)
351 PRK08013 hypothetical protein; 92.8 0.23 6E-06 28.9 4.8 35 1-36 1-35 (400)
352 PRK07063 short chain dehydroge 92.7 0.85 2.2E-05 25.3 8.2 114 5-120 8-143 (259)
353 PRK08163 salicylate hydroxylas 92.7 0.26 6.6E-06 28.6 5.0 38 1-39 1-39 (396)
354 PRK12778 putative bifunctional 92.7 0.86 2.2E-05 25.2 8.1 79 3-81 439-535 (760)
355 cd04129 Rho2 Rho2 subfamily. 92.6 0.28 7E-06 28.4 5.0 107 3-126 1-118 (187)
356 pfam05368 NmrA NmrA-like famil 92.6 0.89 2.3E-05 25.1 13.0 67 6-81 1-74 (232)
357 COG0451 WcaG Nucleoside-diphos 92.5 0.9 2.3E-05 25.1 9.8 167 5-181 2-181 (314)
358 PRK02705 murD UDP-N-acetylmura 92.5 0.7 1.8E-05 25.8 7.0 127 7-138 4-138 (459)
359 PRK06753 hypothetical protein; 92.5 0.22 5.5E-06 29.1 4.4 34 5-39 2-35 (373)
360 pfam01266 DAO FAD dependent ox 92.5 0.2 5.2E-06 29.3 4.2 32 5-37 1-32 (309)
361 PRK10206 putative dehydrogenas 92.5 0.56 1.4E-05 26.4 6.5 67 3-79 2-73 (345)
362 PRK06834 hypothetical protein; 92.5 0.28 7.2E-06 28.4 4.9 36 1-37 1-36 (488)
363 pfam02882 THF_DHG_CYH_C Tetrah 92.5 0.54 1.4E-05 26.5 6.4 55 2-83 35-91 (159)
364 PRK06523 short chain dehydroge 92.4 0.85 2.2E-05 25.3 7.3 125 3-133 9-157 (260)
365 PRK09754 phenylpropionate diox 92.4 0.29 7.4E-06 28.3 4.9 36 1-36 1-37 (400)
366 cd01870 RhoA_like RhoA-like su 92.4 0.79 2E-05 25.5 7.1 107 3-126 1-118 (175)
367 KOG2013 consensus 92.2 0.23 6E-06 28.9 4.2 36 2-37 11-46 (603)
368 PRK13394 3-hydroxybutyrate deh 92.2 0.99 2.5E-05 24.8 10.3 116 4-120 7-143 (262)
369 PRK08020 ubiF 2-octaprenyl-3-m 92.2 0.35 8.8E-06 27.8 5.0 36 1-37 1-38 (391)
370 cd04133 Rop_like Rop subfamily 92.1 0.65 1.7E-05 26.0 6.4 106 5-127 3-119 (176)
371 PRK10792 bifunctional 5,10-met 92.0 0.53 1.3E-05 26.6 5.9 40 150-200 142-181 (288)
372 PRK10084 dTDP-glucose 4,6 dehy 92.0 1 2.7E-05 24.7 9.5 101 5-109 2-113 (352)
373 TIGR03206 benzo_BadH 2-hydroxy 91.9 1.1 2.7E-05 24.6 11.8 116 1-120 1-138 (250)
374 PRK08265 short chain dehydroge 91.9 1.1 2.7E-05 24.6 9.5 112 4-120 6-136 (261)
375 PRK09424 pntA NAD(P) transhydr 91.8 0.84 2.1E-05 25.3 6.7 79 2-84 164-261 (510)
376 PRK12724 flagellar biosynthesi 91.8 1.1 2.8E-05 24.5 9.6 129 5-144 225-367 (432)
377 CHL00194 ycf39 Ycf39; Provisio 91.7 1.1 2.8E-05 24.5 8.9 67 5-82 2-75 (319)
378 COG2072 TrkA Predicted flavopr 91.7 0.39 1E-05 27.4 4.9 37 1-37 6-42 (443)
379 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 91.7 1.1 2.9E-05 24.5 7.5 135 5-164 15-162 (232)
380 PRK05732 2-octaprenyl-6-methox 91.6 0.44 1.1E-05 27.1 5.0 36 1-36 1-38 (395)
381 pfam08477 Miro Miro-like prote 91.5 0.37 9.5E-06 27.6 4.7 105 5-124 1-118 (118)
382 cd04131 Rnd Rnd subfamily. Th 91.5 1.2 3E-05 24.4 7.4 108 3-127 1-119 (178)
383 PRK11863 N-acetyl-gamma-glutam 91.5 0.92 2.3E-05 25.1 6.6 31 3-33 2-33 (314)
384 cd01875 RhoG RhoG subfamily. 91.4 0.23 5.9E-06 28.9 3.5 113 1-127 1-121 (191)
385 PRK10309 galactitol-1-phosphat 91.4 1.2 3.1E-05 24.3 8.9 46 113-164 162-207 (347)
386 cd04130 Wrch_1 Wrch-1 subfamil 91.4 0.91 2.3E-05 25.1 6.5 106 5-127 2-118 (173)
387 PRK06914 short chain dehydroge 91.3 1.2 3.2E-05 24.2 11.6 116 1-120 1-139 (280)
388 cd01076 NAD_bind_1_Glu_DH NAD( 91.3 0.34 8.6E-06 27.9 4.2 35 1-35 29-63 (227)
389 KOG4777 consensus 91.3 0.53 1.3E-05 26.6 5.2 80 1-81 1-87 (361)
390 TIGR02355 moeB molybdopterin s 91.3 0.43 1.1E-05 27.2 4.7 39 1-39 22-60 (240)
391 COG1091 RfbD dTDP-4-dehydrorha 91.2 1 2.6E-05 24.7 6.7 204 5-249 2-225 (281)
392 PRK06124 gluconate 5-dehydroge 91.2 1.3 3.2E-05 24.2 10.0 113 2-120 13-149 (259)
393 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 91.2 1.3 3.2E-05 24.2 7.2 107 3-126 1-118 (222)
394 PRK07035 short chain dehydroge 91.2 1.3 3.2E-05 24.2 10.8 115 2-120 7-144 (252)
395 PRK09754 phenylpropionate diox 91.1 0.3 7.7E-06 28.2 3.9 34 3-37 144-177 (400)
396 PRK08850 2-octaprenyl-6-methox 91.1 0.46 1.2E-05 27.0 4.8 35 1-36 2-36 (405)
397 PRK08818 prephenate dehydrogen 91.1 0.92 2.4E-05 25.0 6.3 55 3-80 4-60 (373)
398 KOG2018 consensus 91.1 0.37 9.4E-06 27.6 4.3 36 2-37 73-108 (430)
399 PRK06995 flhF flagellar biosyn 91.1 1.3 3.3E-05 24.1 9.4 131 5-150 178-323 (404)
400 TIGR01318 gltD_gamma_fam gluta 91.0 0.45 1.1E-05 27.1 4.7 159 3-199 143-324 (480)
401 smart00859 Semialdhyde_dh Semi 91.0 0.98 2.5E-05 24.9 6.3 73 5-81 1-75 (122)
402 PRK00257 erythronate-4-phospha 91.0 0.65 1.7E-05 26.0 5.4 34 2-36 115-148 (379)
403 PRK06101 short chain dehydroge 90.9 1.3 3.3E-05 24.0 6.9 107 4-120 2-127 (241)
404 COG0421 SpeE Spermidine syntha 90.9 1.3 3.4E-05 24.0 10.1 105 3-119 77-189 (282)
405 PRK08773 2-octaprenyl-3-methyl 90.8 0.52 1.3E-05 26.7 4.8 34 3-37 6-39 (392)
406 PRK11259 solA N-methyltryptoph 90.8 0.41 1E-05 27.3 4.2 33 4-37 4-36 (377)
407 PRK12939 short chain dehydroge 90.8 1.4 3.5E-05 23.9 11.7 115 4-120 7-142 (250)
408 PRK08010 pyridine nucleotide-d 90.7 0.57 1.5E-05 26.4 5.0 36 1-37 1-36 (441)
409 PRK12823 benD 1,6-dihydroxycyc 90.7 1.4 3.6E-05 23.9 9.5 113 5-120 9-143 (260)
410 COG0686 Ald Alanine dehydrogen 90.7 0.73 1.8E-05 25.7 5.5 70 2-79 167-239 (371)
411 PRK09126 hypothetical protein; 90.7 0.55 1.4E-05 26.5 4.8 35 1-36 1-35 (392)
412 PTZ00318 NADH dehydrogenase; P 90.7 0.45 1.2E-05 27.0 4.4 36 1-37 8-43 (514)
413 PRK08085 gluconate 5-dehydroge 90.7 1.4 3.6E-05 23.8 10.9 115 2-120 8-144 (254)
414 PRK07576 short chain dehydroge 90.6 1.4 3.6E-05 23.8 11.3 114 2-120 7-142 (260)
415 PRK06475 salicylate hydroxylas 90.6 0.53 1.4E-05 26.6 4.7 36 2-38 1-36 (400)
416 cd04135 Tc10 TC10 subfamily. 90.6 0.98 2.5E-05 24.9 6.0 108 5-126 2-117 (174)
417 PRK03562 glutathione-regulated 90.6 1.4 3.7E-05 23.8 10.8 136 3-169 399-541 (615)
418 PRK08339 short chain dehydroge 90.5 1.5 3.7E-05 23.7 9.8 112 4-120 8-143 (263)
419 COG0460 ThrA Homoserine dehydr 90.5 0.75 1.9E-05 25.6 5.4 84 1-87 1-94 (333)
420 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 90.5 1.4 3.6E-05 23.8 6.8 107 4-127 6-123 (182)
421 pfam01564 Spermine_synth Sperm 90.5 1.5 3.7E-05 23.7 11.1 111 2-121 75-190 (240)
422 PRK05714 2-octaprenyl-3-methyl 90.4 0.55 1.4E-05 26.5 4.6 35 1-37 1-35 (405)
423 TIGR03452 mycothione_red mycot 90.4 0.41 1E-05 27.3 4.0 56 72-133 132-191 (452)
424 TIGR03219 salicylate_mono sali 90.4 0.55 1.4E-05 26.5 4.6 35 5-39 2-36 (414)
425 COG1160 Predicted GTPases [Gen 90.3 1.5 3.8E-05 23.6 6.9 136 1-153 1-162 (444)
426 COG0654 UbiH 2-polyprenyl-6-me 90.3 0.56 1.4E-05 26.4 4.6 34 2-36 1-34 (387)
427 cd04132 Rho4_like Rho4-like su 90.3 0.66 1.7E-05 26.0 5.0 110 4-127 1-119 (187)
428 PRK05249 soluble pyridine nucl 90.3 0.61 1.6E-05 26.2 4.8 35 1-36 4-38 (465)
429 PRK06718 precorrin-2 dehydroge 90.2 1.5 3.9E-05 23.6 10.3 130 1-160 8-139 (202)
430 PRK09242 tropinone reductase; 90.2 1.5 3.9E-05 23.6 11.6 117 2-120 9-147 (258)
431 PRK12936 3-ketoacyl-(acyl-carr 90.1 1.6 4E-05 23.5 8.4 115 2-120 5-138 (245)
432 PRK06185 hypothetical protein; 90.1 0.63 1.6E-05 26.1 4.7 37 1-38 4-40 (409)
433 PRK00048 dihydrodipicolinate r 90.1 1.6 4E-05 23.5 11.4 70 3-76 2-74 (265)
434 cd04124 RabL2 RabL2 subfamily. 90.1 1.6 4E-05 23.5 6.8 105 5-125 2-116 (161)
435 PRK13581 D-3-phosphoglycerate 90.0 1.6 4.1E-05 23.5 6.9 36 2-38 137-172 (524)
436 KOG2336 consensus 90.0 0.37 9.3E-06 27.6 3.5 36 2-37 81-116 (422)
437 TIGR01369 CPSaseII_lrg carbamo 90.0 1.6 4.1E-05 23.5 10.0 150 3-182 573-742 (1089)
438 PRK06019 phosphoribosylaminoim 89.9 1.6 4.1E-05 23.4 7.6 111 3-127 7-134 (377)
439 PRK09186 flagellin modificatio 89.9 1.6 4.1E-05 23.4 10.1 114 2-120 2-143 (255)
440 PRK07494 2-octaprenyl-6-methox 89.9 0.31 7.9E-06 28.1 3.0 37 1-38 1-39 (386)
441 PRK06184 hypothetical protein; 89.9 0.59 1.5E-05 26.3 4.4 35 3-38 6-40 (503)
442 TIGR01988 Ubi-OHases Ubiquinon 89.9 0.45 1.2E-05 27.0 3.8 191 6-206 2-257 (445)
443 PRK12723 flagellar biosynthesi 89.8 1.7 4.2E-05 23.4 10.9 141 3-157 174-332 (388)
444 TIGR00137 gid gid protein; Int 89.8 0.21 5.4E-06 29.2 2.1 133 4-137 1-152 (444)
445 cd01874 Cdc42 Cdc42 subfamily. 89.8 1.7 4.2E-05 23.4 7.7 106 4-126 2-118 (175)
446 PRK12831 putative oxidoreducta 89.8 0.72 1.8E-05 25.7 4.8 79 2-82 139-239 (464)
447 KOG0409 consensus 89.7 1.2 3.1E-05 24.2 6.0 67 3-82 35-102 (327)
448 pfam01113 DapB_N Dihydrodipico 89.7 1.7 4.3E-05 23.3 10.4 35 5-39 2-38 (122)
449 cd05211 NAD_bind_Glu_Leu_Phe_V 89.7 1.7 4.3E-05 23.3 7.5 35 1-35 21-55 (217)
450 PRK08774 consensus 89.7 0.47 1.2E-05 26.9 3.8 36 1-37 1-37 (402)
451 PRK06617 2-octaprenyl-6-methox 89.6 0.52 1.3E-05 26.6 4.0 33 4-37 2-34 (374)
452 COG0476 ThiF Dinucleotide-util 89.5 0.54 1.4E-05 26.5 4.0 37 1-37 28-64 (254)
453 TIGR01921 DAP-DH diaminopimela 89.4 1 2.7E-05 24.7 5.4 113 1-138 1-125 (326)
454 COG1062 AdhC Zn-dependent alco 89.3 1.6 4.1E-05 23.5 6.3 75 5-82 188-265 (366)
455 cd04143 Rhes_like Rhes_like su 89.3 1.2 3E-05 24.4 5.6 108 4-125 1-125 (247)
456 TIGR03364 HpnW_proposed FAD de 89.3 0.61 1.6E-05 26.2 4.2 31 6-37 3-33 (365)
457 PRK08263 short chain dehydroge 89.3 1.8 4.6E-05 23.1 8.8 114 1-121 1-136 (275)
458 TIGR00050 rRNA_methyl_1 RNA me 89.3 0.85 2.2E-05 25.3 4.9 75 5-82 6-86 (253)
459 PRK08213 gluconate 5-dehydroge 89.3 1.8 4.6E-05 23.1 11.6 116 4-120 12-148 (259)
460 PRK07904 short chain dehydroge 89.2 1.8 4.7E-05 23.1 11.8 114 3-120 8-145 (253)
461 KOG1429 consensus 89.1 0.77 2E-05 25.5 4.5 48 2-53 26-74 (350)
462 cd01079 NAD_bind_m-THF_DH NAD 89.0 0.91 2.3E-05 25.1 4.9 76 2-83 61-138 (197)
463 cd01871 Rac1_like Rac1-like su 89.0 0.28 7.2E-06 28.4 2.3 109 4-126 2-118 (174)
464 PRK07538 hypothetical protein; 89.0 0.74 1.9E-05 25.7 4.4 33 5-38 2-34 (413)
465 PRK07251 pyridine nucleotide-d 88.9 0.98 2.5E-05 24.9 5.0 36 1-37 1-36 (438)
466 PRK05562 precorrin-2 dehydroge 88.8 2 5E-05 22.9 10.2 130 2-161 23-155 (222)
467 PRK00811 spermidine synthase; 88.8 2 5E-05 22.9 8.5 108 2-120 78-193 (283)
468 PRK05557 fabG 3-ketoacyl-(acyl 88.8 2 5E-05 22.9 11.7 118 1-120 3-141 (248)
469 pfam00208 ELFV_dehydrog Glutam 88.7 0.66 1.7E-05 26.0 4.0 26 2-27 31-56 (237)
470 PRK03803 murD UDP-N-acetylmura 88.7 2 5.1E-05 22.9 10.6 124 3-137 7-137 (448)
471 PRK06947 glucose-1-dehydrogena 88.6 2 5.1E-05 22.8 10.9 118 3-120 5-146 (252)
472 PRK10538 3-hydroxy acid dehydr 88.6 2 5.1E-05 22.8 9.6 111 6-120 3-133 (248)
473 pfam00743 FMO-like Flavin-bind 88.6 0.95 2.4E-05 25.0 4.7 33 3-36 1-33 (532)
474 PRK09987 dTDP-4-dehydrorhamnos 88.6 2 5.1E-05 22.8 7.6 256 5-295 2-284 (299)
475 PRK08243 4-hydroxybenzoate 3-m 88.6 0.79 2E-05 25.5 4.3 33 3-36 2-34 (392)
476 KOG2012 consensus 88.5 2 5.2E-05 22.8 6.5 76 1-80 35-132 (1013)
477 TIGR02853 spore_dpaA dipicolin 88.5 1.5 3.9E-05 23.6 5.8 21 3-23 152-172 (288)
478 pfam08659 KR KR domain. This e 88.4 2.1 5.3E-05 22.8 10.1 77 6-83 3-93 (181)
479 PRK07588 hypothetical protein; 88.4 0.87 2.2E-05 25.2 4.5 34 5-39 2-35 (391)
480 PRK06171 sorbitol-6-phosphate 88.4 1.1 2.8E-05 24.5 5.0 110 4-120 9-144 (266)
481 PRK12743 acetoin dehydrogenase 88.3 2.1 5.4E-05 22.7 11.6 112 4-120 2-139 (253)
482 TIGR01701 Fdhalpha-like oxidor 88.3 0.36 9.2E-06 27.7 2.4 228 47-301 183-475 (824)
483 cd04141 Rit_Rin_Ric Rit/Rin/Ri 88.3 1.8 4.5E-05 23.2 5.9 108 2-125 1-119 (172)
484 PRK08244 hypothetical protein; 88.2 0.93 2.4E-05 25.0 4.4 33 4-37 3-35 (494)
485 PRK08589 short chain dehydroge 88.1 2.2 5.5E-05 22.6 9.0 111 4-120 6-140 (272)
486 PRK05868 hypothetical protein; 88.1 1.1 2.8E-05 24.5 4.8 35 4-39 2-36 (372)
487 PRK05225 ketol-acid reductoiso 88.1 1.5 3.9E-05 23.6 5.5 77 1-92 35-114 (489)
488 TIGR00417 speE spermidine synt 88.0 1.6 4E-05 23.5 5.5 110 2-120 75-195 (284)
489 PRK07333 2-octaprenyl-6-methox 87.9 1.1 2.7E-05 24.6 4.6 34 4-37 2-36 (403)
490 PRK07097 gluconate 5-dehydroge 87.9 2.2 5.7E-05 22.5 9.2 112 5-120 11-145 (265)
491 PRK06183 mhpA 3-(3-hydroxyphen 87.9 1 2.6E-05 24.8 4.5 33 4-37 13-45 (554)
492 KOG0685 consensus 87.8 1.1 2.7E-05 24.6 4.6 33 2-34 20-52 (498)
493 cd04126 Rab20 Rab20 subfamily. 87.8 2.2 5.7E-05 22.6 6.2 103 5-127 2-114 (220)
494 COG0644 FixC Dehydrogenases (f 87.8 1.2 3E-05 24.3 4.8 34 2-36 2-35 (396)
495 PTZ00132 GTP-binding nuclear p 87.8 2.3 5.8E-05 22.5 8.1 107 1-125 4-122 (209)
496 cd01080 NAD_bind_m-THF_DH_Cycl 87.7 2.3 5.8E-05 22.5 6.2 55 2-83 43-99 (168)
497 PRK06227 consensus 87.5 2.3 6E-05 22.4 8.8 115 4-120 5-140 (256)
498 pfam00670 AdoHcyase_NAD S-aden 87.5 2.4 6E-05 22.4 6.7 67 3-82 23-89 (162)
499 cd00877 Ran Ran (Ras-related n 87.5 2.2 5.7E-05 22.5 6.1 104 5-124 2-115 (166)
500 cd04128 Spg1 Spg1p. Spg1p (se 87.5 1.8 4.5E-05 23.2 5.6 102 5-124 2-115 (182)
No 1
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase; InterPro: IPR011304 This entry represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme functions as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities.; GO: 0004459 L-lactate dehydrogenase activity, 0019642 anaerobic glycolysis, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=769.01 Aligned_cols=298 Identities=37% Similarity=0.647 Sum_probs=286.6
Q ss_pred EECCCCHHHHHHHHHHHCCCC-EEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCCCCCC
Q ss_conf 988981368999999957998-6999965788128988307620544688756852697488378978999556666765
Q gi|254781048|r 8 LIGSGMIGGTLAHLAVLKKLG-DVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIPRKPS 86 (320)
Q Consensus 8 IIGaG~VG~~~a~~~~~~~l~-ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~~~~g 86 (320)
|||+|+||+++||++++++++ |++|+|++++|++|+||||+|+++|.++....+..+||++|+|||+||||||.|+|||
T Consensus 1 iiG~G~VGss~A~a~~~~g~a~E~vliDin~~ka~Gea~DL~ha~~f~~~~~~~v~~gdY~dc~daD~vVITAG~~QKPG 80 (302)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGLADEIVLIDINKDKAEGEAMDLQHAASFLPTPGVKVRAGDYSDCKDADLVVITAGAPQKPG 80 (302)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCHHHCCCCCEEEECCCHHHHCCCCEEEEECCCCCCCC
T ss_conf 91148618999999973150318878834757789878655222222378611776189799638978999327775348
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 57467899889999999976541266740887148420789999884499865611000525689999999997198733
Q gi|254781048|r 87 MSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQEFGVSVE 166 (320)
Q Consensus 87 ~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~l~v~~~ 166 (320)
|||+||+++|++|+|+|++.+.+++||||++|||||||+|||++||+||||++|||||||+|||+|||++||++++|+|+
T Consensus 81 EtRL~Lv~~N~~I~K~Iv~~v~k~gf~gI~lvatNPVDIlTy~~~klSGfP~~rVIGSGT~LDTaRfR~~l~~~~~v~p~ 160 (302)
T TIGR01771 81 ETRLELVDRNVKIMKSIVPEVVKSGFDGIFLVATNPVDILTYVAWKLSGFPKNRVIGSGTVLDTARFRYLLAEKLGVDPQ 160 (302)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCC
T ss_conf 88799999889999998546541389847999866315899999987478720077506613558999999998579844
Q ss_pred CCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCCC--CHHHHH-HHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 5505675078852465102354477015543001587--876799-9984551015888875157654322032323445
Q gi|254781048|r 167 SVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKLGWT--TQEKID-QIVKRTREGGAEIVGLLRSGSAYYAPASSAIAIA 243 (320)
Q Consensus 167 ~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~~--~~~~~~-~l~~~v~~~g~~ii~~~~kg~t~~~~a~a~~~ii 243 (320)
+||||||||||||+||+||+++|+|+|+++|++.... .+.++. +|.++||+++||||+ +||+|+||||++++||+
T Consensus 161 sVhaYi~GEHGDSe~~vWS~a~IgG~pl~~~~~~~~~~~~~~~~~~~i~~~v~~~AYeII~--~KGaT~YGIG~~~a~i~ 238 (302)
T TIGR01771 161 SVHAYIIGEHGDSEVAVWSSATIGGVPLLDFLETKGTEETDLDLKEEIEKEVRDAAYEIIN--RKGATYYGIGAAVARIV 238 (302)
T ss_pred CCCCEEEEEECCCCEEHCCCCEECCEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHH
T ss_conf 2120486410681000101435702670001021178876503688875886477898872--04883399999999999
Q ss_pred HHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5452889749999999736447563478876999787228884799988999999999999999
Q gi|254781048|r 244 ESYLKNKKNLLPCAAHLSGQYGVEGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATVD 307 (320)
Q Consensus 244 ~aIl~~~~~v~~~s~~~~g~yg~~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~~ 307 (320)
+|||+|+++|+|||+|++|+||++|+|||+||+||++||++++|++||++|+++|++||+.||+
T Consensus 239 ~aIl~d~~~ilpvS~~l~G~yG~~dv~ig~Pa~lg~~Gv~~i~e~~L~~~E~~~f~~Sa~~LK~ 302 (302)
T TIGR01771 239 EAILKDENRILPVSAYLDGQYGIKDVYIGVPAVLGRNGVEEIIELPLSDEEKEAFQKSAETLKK 302 (302)
T ss_pred HHHHCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 9987068758788876416158663144654012224652424279998999999989999609
No 2
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=674.80 Aligned_cols=313 Identities=52% Similarity=0.844 Sum_probs=305.2
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 99872899889813689999999579986999965788128988307620544688756852697488378978999556
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
|+++||+|||+|+||+++||++.+++++||+|+|+++++++|+++||+|+.++.+..+++.+++||++++||||||||||
T Consensus 5 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~eivLiDi~~~~a~g~a~Dl~h~~~~~~~~~~v~~~~dy~~~~~aDiVVitAG 84 (322)
T PTZ00082 5 IPRKKISLIGSGNIGGVMAYLIQLKNLADVVLFDIVPNIPAGKALDIMHANVMAGSNCKVIGTNSYDDIAGSDVVIVTAG 84 (322)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECCCHHHHCCCCEEEECCC
T ss_conf 17982999896989999999996389977999978898008899987663644688857983799999779999998988
Q ss_pred CCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHH
Q ss_conf 66676557-----4678998899999999765412667408871484207899998844998656110005256899999
Q gi|254781048|r 81 IPRKPSMS-----RDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRY 155 (320)
Q Consensus 81 ~~~~~g~~-----R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~ 155 (320)
.||+|||+ |+||+..|++|++++++++++++|+++++++|||||+|||++||.||||++||||+||.|||+|||+
T Consensus 85 ~~~kpg~t~~~~~R~dLl~~Na~I~~~i~~~i~~~~p~aiiivvsNPvDv~t~~~~k~sg~p~~rViG~Gt~LDsaR~r~ 164 (322)
T PTZ00082 85 LAKAPGKSDDEWNRDDLLPLNAKIMIEVGENIKKYCPNAFVIVITNPLDVMVQLLLKVSGFPKNKVVGMGGVLDSSRMKY 164 (322)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHH
T ss_conf 87789998765678899998899999999998740998359974892699999999976898224896412388899999
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCC
Q ss_conf 99997198733550567507885246510235447701554300158787679999845510158888751576543220
Q gi|254781048|r 156 FLAQEFGVSVESVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLLRSGSAYYAP 235 (320)
Q Consensus 156 ~ia~~l~v~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~~kg~t~~~~ 235 (320)
+||++++++|++|++||||||||+|||+||+++|+|+|+.++++....++++++++.++++++|++|++++|||+|+||+
T Consensus 165 ~ia~~l~v~~~~V~~~ViGeHGds~vp~wS~~~v~G~pl~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~gkgst~~gi 244 (322)
T PTZ00082 165 YIAQKLGVNPRDVHASVIGAHGDSMVPLTSYVTVGGIPLQEFIEQGLITQEEIDEIFERTVNSALEIVNLYGSGSAYFAP 244 (322)
T ss_pred HHHHHHCCCHHHEEEEEEECCCCCEEEEEEEEEECCEEHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHH
T ss_conf 99998498877727677614688268742222798898688631489998999999986405652231304877663029
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 323234455452889749999999736447563478876999787228884799988999999999999999999999
Q gi|254781048|r 236 ASSAIAIAESYLKNKKNLLPCAAHLSGQYGVEGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATVDLCNSCT 313 (320)
Q Consensus 236 a~a~~~ii~aIl~~~~~v~~~s~~~~g~yg~~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~~~~~~~~ 313 (320)
|++++++++||++|++.++|||++++|+||.+++|+|+||+||++||+++++++|+++||++|++|++.||+.+++++
T Consensus 245 a~a~~~i~~aIl~d~~~v~pvs~~l~g~yg~~~v~~s~P~~iG~~Gve~i~~l~L~~~E~~~l~~Sa~~ik~~~~~~k 322 (322)
T PTZ00082 245 AAAAIEMAEAYLKDKKKVLPCSCYLEGQYGHKDIYGGTPAVIGANGVEKVIELKLTPEEQAKFDESIKEIKRLEALIK 322 (322)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCEEEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999996478956999999506778726799989998227220746999899999999999999999999639
No 3
>PTZ00117 malate dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=670.16 Aligned_cols=312 Identities=44% Similarity=0.773 Sum_probs=303.7
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCC
Q ss_conf 87289988981368999999957998699996578812898830762054468875685269748837897899955666
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIP 82 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~ 82 (320)
.+||+|||+|+||+++||++++++++||+|+|+++++++|+++||+|++++.+++.++++++||++++||||||||||.|
T Consensus 1 M~KV~IIGaG~VG~~~A~~l~~~~~~eivLiDi~~~~a~g~a~Dl~h~~~~~~~~~~i~~~~dy~~~~daDiVVitAG~~ 80 (313)
T PTZ00117 1 MKKISIIGSGQIGAIVGLLLLQENLGDVYLYDVIEGVPQGKALDLKHFSTIIGVNANILGTNNYEDIKDSDVIVITAGVQ 80 (313)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCEEEECCCCC
T ss_conf 97899989798999999999708998799995889830889988772420368985798379999968999999898998
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 67655746789988999999997654126674088714842078999988449986561100052568999999999719
Q gi|254781048|r 83 RKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQEFG 162 (320)
Q Consensus 83 ~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~l~ 162 (320)
|||||||+||++.|++|++++++++++++|+++++++|||||+|||++|+.||||++||||+||+|||+|||++||++++
T Consensus 81 rk~g~tR~dLl~~N~~I~~~i~~~i~~~~p~aiiivvtNPvDimt~v~~k~sg~p~~rViG~gt~LDsaR~r~~la~~l~ 160 (313)
T PTZ00117 81 RKEGMTREDLIGVNGKIMKSVAESVKKHCPNAFVICVSNPLDIMVNVFKKKSGLPHEKICGMAGILDTSRFRCLLARKLK 160 (313)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCHHHEEECCCEEEHHHHHHHHHHHHC
T ss_conf 99799889999876777888887762358980899789948999999998628986776700440208899999999968
Q ss_pred CCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 87335505675078852465102354477015543001587876799998455101588887515765432203232344
Q gi|254781048|r 163 VSVESVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLLRSGSAYYAPASSAIAI 242 (320)
Q Consensus 163 v~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~~kg~t~~~~a~a~~~i 242 (320)
++|++|++||+|||||+|||+||+++++|+|+.++++.+..+.++++++.++++++|++|+++ +||+|+||||.+++++
T Consensus 161 v~~~~V~~~ViGeHGds~vp~wS~~~v~G~pl~~~~~~~~~~~~~~~ei~~~~~~~g~~ii~~-~Kg~t~~gia~a~~~i 239 (313)
T PTZ00117 161 VKPSDVSAVVLGGHGDLMVPLTRYVSIGGIPLSEFVKKNKISHSEINEIIKKTRFMGGEIIKL-AKTSAAFAPAAAIVKM 239 (313)
T ss_pred CCCCCEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEE-CCCCCCCHHHHHHHHH
T ss_conf 992213777860568947864520265896189985426878899999999985166238882-2774240489999999
Q ss_pred HHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55452889749999999736447563478876999787228884799988999999999999999999999765
Q gi|254781048|r 243 AESYLKNKKNLLPCAAHLSGQYGVEGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATVDLCNSCTKLV 316 (320)
Q Consensus 243 i~aIl~~~~~v~~~s~~~~g~yg~~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~~~~~~~~~l~ 316 (320)
+++|++|++.++|||++++|+||++|+|+|+||+||++||+++ +++|+++||++|++|++.+|+.++++.+++
T Consensus 240 v~aIl~d~~~vlpvs~~l~g~yg~~dv~lsvP~viG~~Gve~v-e~~L~~~E~~~l~~S~~~ik~~i~~~~~~i 312 (313)
T PTZ00117 240 IKSYLKNEKSLLTCAVYLNGQYNCSNLFVGVTAVINKNGAEPV-EFNLTDEEQSLYSKSIASVQNLTQKAFSLI 312 (313)
T ss_pred HHHHHCCCCCEEEEEEECCCCCCCCCEEEEEEEEECCCCEEEC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999769995899898703666873579998899927814884-899999999999999999999999999863
No 4
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=664.65 Aligned_cols=307 Identities=34% Similarity=0.624 Sum_probs=293.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCC-CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 98728998898136899999995799-86999965788128988307620544688756852697488378978999556
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKL-GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l-~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
|++||+|||+|+||+++||+++++++ +||+|+|+++++++|+++||+|+++|.+ ..+ +.++||++++|||+||||||
T Consensus 5 k~~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiD~~~~~a~g~a~Dl~h~~~~~~-~~~-i~~gdy~~~~daDvVVitAG 82 (315)
T PRK00066 5 KHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTS-PTK-IYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCC-CCE-EEECCHHHHCCCCEEEECCC
T ss_conf 8984999997988999999998669988899980898710789998885412368-847-97399999679999998999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 66676557467899889999999976541266740887148420789999884499865611000525689999999997
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQE 160 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~ 160 (320)
.||||||+|+||++.|++|++++++++++++|+++++++|||||+|||++||.||||++||||+||.|||+|||++||++
T Consensus 83 ~~~k~g~tR~dll~~N~~I~~~i~~~i~~~~p~~i~ivvtNPvDvmt~~~~k~sg~p~~rViG~GT~LDs~R~~~~la~~ 162 (315)
T PRK00066 83 APQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYATWKFSGFPKERVIGSGTSLDSARFRYMLAEK 162 (315)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCCHHEEEECCHHHHHHHHHHHHHH
T ss_conf 98999998789998789999998877642488539999369189999999997499802256414448899999999998
Q ss_pred CCCCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCC-CCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 19873355056750788524651023544770155430015-87876799998455101588887515765432203232
Q gi|254781048|r 161 FGVSVESVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKLG-WTTQEKIDQIVKRTREGGAEIVGLLRSGSAYYAPASSA 239 (320)
Q Consensus 161 l~v~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~-~~~~~~~~~l~~~v~~~g~~ii~~~~kg~t~~~~a~a~ 239 (320)
++++|++|++||||||||+|||+||+++++|+|+.++++.. .+++++++++.++++++|++|++ +||+|+||+|.++
T Consensus 163 l~v~~~~V~~~ViGeHGds~vp~wS~~~v~G~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~--~KG~t~~~ia~a~ 240 (315)
T PRK00066 163 LDVDPRSVHAYILGEHGDTEFPVWSHANVAGVPLEEYLEENEEYDEEDLDEIFESVRDAAYEIIE--KKGATYYGIAMAL 240 (315)
T ss_pred HCCCCCCCEEEEEECCCCCEEECCCCCEECCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEE--CCCCCCHHHHHHH
T ss_conf 49993031688995268963752221448768889975014778888999999999875786311--6787611399999
Q ss_pred HHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3445545288974999999973644756347887699978722888479998899999999999999999999
Q gi|254781048|r 240 IAIAESYLKNKKNLLPCAAHLSGQYGVEGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATVDLCNSC 312 (320)
Q Consensus 240 ~~ii~aIl~~~~~v~~~s~~~~g~yg~~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~~~~~~~ 312 (320)
++++++|++|++.++|||++++|+||.+|+|+|+||+||++||+++++++|+++||++|++|++.||+.++++
T Consensus 241 ~~iv~aIl~d~~~vlpvs~~l~geYg~~dv~~s~P~vig~~Gv~~i~~l~L~~~E~~~l~~Sa~~ik~~i~~a 313 (315)
T PRK00066 241 ARITKAILNDENAVLPVSAYLEGQYGEEDIYIGVPAIVNRNGIREIVELPLNDDEKQKFAHSADVLKEIMDEA 313 (315)
T ss_pred HHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999769981899999842564774569999999844815487389989999999999999999999985
No 5
>PRK06223 malate dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=661.13 Aligned_cols=310 Identities=62% Similarity=1.040 Sum_probs=301.4
Q ss_pred EEEEECCCCHHHHHHHHHHHCCC-CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCCC
Q ss_conf 28998898136899999995799-86999965788128988307620544688756852697488378978999556666
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKL-GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIPR 83 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l-~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~~ 83 (320)
||+|||||+||+++||+++++++ +||+|+|+++++++|+++||+|+.++.+..+++..++||++++|||+||||||.||
T Consensus 2 KI~IiGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~d~~~~~daDiVVitag~~r 81 (312)
T PRK06223 2 KISIIGAGNVGATLAHLLALKELGKDVVLFDIPEGIPQGKALDIAESSAVDGFDAKITGTNDYADIAGSDVVIITAGVPR 81 (312)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHCCCCEEEEECCCCC
T ss_conf 79999969899999999985799874899769997336798887651433688847983788899579999999067789
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 76557467899889999999976541266740887148420789999884499865611000525689999999997198
Q gi|254781048|r 84 KPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQEFGV 163 (320)
Q Consensus 84 ~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~l~v 163 (320)
+|||+|+||++.|++|++++++++++++|+++++++|||||+|||++|+.||||++||||+||.|||+|||++||+++++
T Consensus 82 k~g~tR~dll~~N~~I~k~i~~~i~~~~p~~iilvvsNPvDv~t~~~~k~sg~p~~rviG~gT~LDs~R~r~~ia~~l~v 161 (312)
T PRK06223 82 KPGMSRDDLLGINAKIMKDVGEGIKKYAPDAIVIVITNPVDAMTYVALKESGFPKERVIGMGGVLDSARFRYFLAEEFNV 161 (312)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 99988689999878999999999984099818999369368999999986099988811431158789999999999698
Q ss_pred CCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 73355056750788524651023544770155430015878767999984551015888875157654322032323445
Q gi|254781048|r 164 SVESVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLLRSGSAYYAPASSAIAIA 243 (320)
Q Consensus 164 ~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~~kg~t~~~~a~a~~~ii 243 (320)
+|++|++||||||||+|||+||+++|+|+|+.++++. ..++++++.++++++|++|+++++||+|+||+|+++++++
T Consensus 162 ~~~~V~~~ViGeHGds~vp~wS~~~i~G~pl~~~~~~---~~~~~~~i~~~v~~~g~~Ii~~~gkG~t~~~ia~a~~~iv 238 (312)
T PRK06223 162 SVKDVTAFVLGGHGDSMVPLVRYSTVGGIPLPDLLKM---SQERIDEIVERTRNGGAEIVNLLKKGSAYYAPAASIVEMV 238 (312)
T ss_pred CHHHEEEEEECCCCCCEEEEEEEEEECCEEHHHHHCC---CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9657478897267983554502137997998996127---7768999999998728999866317761478999999999
Q ss_pred HHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 54528897499999997364475634788769997872288847999889999999999999999999997655
Q gi|254781048|r 244 ESYLKNKKNLLPCAAHLSGQYGVEGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATVDLCNSCTKLVP 317 (320)
Q Consensus 244 ~aIl~~~~~v~~~s~~~~g~yg~~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~~~~~~~~~l~~ 317 (320)
++|++|+++++|||++++|+||++|+|+|+|++||++||+++++++|+++|+++|++|++.|++.+++++.|||
T Consensus 239 ~aIl~d~~~i~~~s~~l~g~yg~~~v~~s~P~~ig~~Gi~~i~~l~L~~~E~~~l~~sa~~i~~~~~~vk~ll~ 312 (312)
T PRK06223 239 EAILKDKKRVLPCSAYLEGEYGIKDVYVGVPVKIGKNGVEKVIEIELTEDEKEAFDKSVEAVKKLCEALKSILP 312 (312)
T ss_pred HHHHCCCCCCEEEEEEECCCCCCCCEEEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99867899706789985266687667999789986995599838999999999999999999999999984586
No 6
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=0 Score=654.23 Aligned_cols=304 Identities=30% Similarity=0.517 Sum_probs=294.2
Q ss_pred EEEEECCCCHHHHHHHHHHHCCC-CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCCC
Q ss_conf 28998898136899999995799-86999965788128988307620544688756852697488378978999556666
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKL-GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIPR 83 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l-~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~~ 83 (320)
||+|||+|+||+++||+++++++ +||+|+|+++++++|+++||+|++++.+.......++||++++|||+||+|||.||
T Consensus 1 KI~IIGaG~VG~~~A~~l~~~~~~~elvL~Di~~~~a~g~a~Dl~h~~~~~~~~~~~~~~~~y~~~~~aDiVVitaG~~~ 80 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEECCCCHHHHCCCCEEEECCCCCC
T ss_conf 98999969899999999985699887999928898237999987612035899865866799899469999998677765
Q ss_pred CCCCC--HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 76557--4678998899999999765412667408871484207899998844998656110005256899999999971
Q gi|254781048|r 84 KPSMS--RDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQEF 161 (320)
Q Consensus 84 ~~g~~--R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~l 161 (320)
+|||+ |+||++.|++|++++++++++++|+++++++|||||+|||++||.||||++||||+||.|||+|||++||+++
T Consensus 81 kpg~t~~R~dL~~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDvmt~~~~k~sg~p~~rViG~Gt~LDsaR~r~~la~~l 160 (307)
T cd05290 81 DPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIAATEFDYPANKVIGTGTMLDTARLRRIVADKY 160 (307)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHH
T ss_conf 89998358888885789999999998613997499984793889999999984899357872022177899999999984
Q ss_pred CCCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 98733550567507885246510235447701554300158787679999845510158888751576543220323234
Q gi|254781048|r 162 GVSVESVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLLRSGSAYYAPASSAIA 241 (320)
Q Consensus 162 ~v~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~~kg~t~~~~a~a~~~ 241 (320)
+++|++|++||||||||+|||+||+++++|+|+.++.+..+....+++++.++++++|++|++ +||+|+||||+++++
T Consensus 161 ~v~~~~V~a~VlGeHGds~vp~wS~~~v~G~pl~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~--~kG~t~~gia~a~~~ 238 (307)
T cd05290 161 GVDPKNVTGYVLGEHGSHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFN--RKGWTNAGIAKSASR 238 (307)
T ss_pred CCCCCCCEEEEEECCCCCEEEEEECCEECCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHH
T ss_conf 999343320587447995787410132888988998751598744399999998602488885--258831999999999
Q ss_pred HHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 455452889749999999736447563478876999787228884799988999999999999999999
Q gi|254781048|r 242 IAESYLKNKKNLLPCAAHLSGQYGVEGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATVDLCN 310 (320)
Q Consensus 242 ii~aIl~~~~~v~~~s~~~~g~yg~~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~~~~~ 310 (320)
|+++|++|++.++|||++++|+||++|+|+|+||+||++||+++++++|+++||++|++|++.+|+.++
T Consensus 239 iv~aIl~d~~~vlpvs~~l~g~yg~~~v~lsvP~viG~~Gve~v~el~L~~~E~~~l~~Sa~~ik~~ie 307 (307)
T cd05290 239 LIKAILLDERSILPVCTLLSGEYGLSDVALSLPTVIGAKGIERVLEIPLDEWELEKLHKSAKAIRETIE 307 (307)
T ss_pred HHHHHHHHCCEEEEEEEEEECCCCCCCEEEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 999998415907766787605667435899988999548333835999899999999999999998619
No 7
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=0 Score=650.35 Aligned_cols=304 Identities=34% Similarity=0.618 Sum_probs=291.0
Q ss_pred EEEEECCCCHHHHHHHHHHHCCC-CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCCC
Q ss_conf 28998898136899999995799-86999965788128988307620544688756852697488378978999556666
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKL-GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIPR 83 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l-~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~~ 83 (320)
||+|||||+||+++||+++++++ +||+|+|+++++++|+++||+|++++.+ . ..+.++||++++|||+||||||.||
T Consensus 2 KI~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~DL~~a~~~~~-~-~~i~~~~~~~l~daDvVVitaG~~r 79 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVK-P-VRIYAGDYADCKGADVVVITAGANQ 79 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCC-C-CEEEECCHHHHCCCCEEEECCCCCC
T ss_conf 7999994888999999998679988799991889845125687662410368-8-1684099999779999998999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 76557467899889999999976541266740887148420789999884499865611000525689999999997198
Q gi|254781048|r 84 KPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQEFGV 163 (320)
Q Consensus 84 ~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~l~v 163 (320)
||||||+|||+.|++|++++++++++++|+++++++|||||+|||++||.||||++||||+||.|||+|||+++|+++++
T Consensus 80 k~g~tR~dll~~Na~I~~~i~~~i~~~~p~~ivivvsNPvDv~t~~~~k~sg~p~~rViG~gt~LDs~R~~~~la~~l~v 159 (308)
T cd05292 80 KPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLGV 159 (308)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCHHEEECCCHHHHHHHHHHHHHHHCC
T ss_conf 98998789998889999999999984199808997279547899999997299802266024468899999999998499
Q ss_pred CCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCC--CCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 733550567507885246510235447701554300158--787679999845510158888751576543220323234
Q gi|254781048|r 164 SVESVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKLGW--TTQEKIDQIVKRTREGGAEIVGLLRSGSAYYAPASSAIA 241 (320)
Q Consensus 164 ~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~--~~~~~~~~l~~~v~~~g~~ii~~~~kg~t~~~~a~a~~~ 241 (320)
+|++|++||||||||+|||+||+++|+|+|+.++++... +++++++++.++++++|++|++ +||+|+||+|.++++
T Consensus 160 ~~~~V~~~ViGeHGds~vp~wS~~~v~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~--~KG~t~~~ia~a~~~ 237 (308)
T cd05292 160 DPRSVHAYIIGEHGDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIE--RKGATYYAIGLALAR 237 (308)
T ss_pred CHHHCEEEEEECCCCCCEECCCCCEECCEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH--CCCCCCCCHHHHHHH
T ss_conf 800064159945789506414205698799899763137889999999999999877687771--389876647999999
Q ss_pred HHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45545288974999999973644756347887699978722888479998899999999999999999999
Q gi|254781048|r 242 IAESYLKNKKNLLPCAAHLSGQYGVEGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATVDLCNSC 312 (320)
Q Consensus 242 ii~aIl~~~~~v~~~s~~~~g~yg~~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~~~~~~~ 312 (320)
++++|++|++.++|||++++|+||++|+|+|+||+||++||+++++++|+++||++|++|++.+|+.++++
T Consensus 238 iv~aIl~d~~~v~p~s~~l~g~yg~~~v~~s~P~~ig~~Gi~~i~~l~L~~~E~~~l~~sa~~ik~~i~~i 308 (308)
T cd05292 238 IVEAILRDENSVLTVSSLLDGQYGIKDVALSLPCIVGRSGVERVLPPPLSEEEEEALRASAEVLKEAIESL 308 (308)
T ss_pred HHHHHHCCCCCEEEEEEEECCCCCCCCEEEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999648991899999742666777779998999832702586489999999999999999999998529
No 8
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=100.00 E-value=0 Score=647.76 Aligned_cols=305 Identities=35% Similarity=0.609 Sum_probs=295.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCC-CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCC
Q ss_conf 728998898136899999995799-8699996578812898830762054468875685269748837897899955666
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKL-GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIP 82 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l-~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~ 82 (320)
+||+|||+|+||+++||+++++++ +||+|+|+++++++|+++||+|++++.+...++ .+++|++++|||+||||||.|
T Consensus 1 rKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~a~G~a~DL~~~~~~~~~~~~i-~~~~~~~~~~aDvvVitAG~~ 79 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKI-KAGDYSDCKDADIVVITAGAP 79 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEE-EECCHHHHCCCCEEEECCCCC
T ss_conf 9599999698899999999857998779998189870176999887013305997399-608878847899999906766
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 67655746789988999999997654126674088714842078999988449986561100052568999999999719
Q gi|254781048|r 83 RKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQEFG 162 (320)
Q Consensus 83 ~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~l~ 162 (320)
|+|||+|+|||+.|++|++++++++++++|+++++++|||||+|||++++.||||++||||+||.|||+||+++||++++
T Consensus 80 rk~g~~R~dLl~~N~~I~k~i~~~i~~~~p~aivivvtNPvDvmt~~~~k~sg~p~~rViG~gT~LDs~R~~~~ia~~l~ 159 (306)
T cd05291 80 QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLN 159 (306)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCHHHEECCCCHHHHHHHHHHHHHHHC
T ss_conf 79999878999978999999999987229971899935816789999998509986661154540899999999999859
Q ss_pred CCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 87335505675078852465102354477015543001587876799998455101588887515765432203232344
Q gi|254781048|r 163 VSVESVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLLRSGSAYYAPASSAIAI 242 (320)
Q Consensus 163 v~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~~kg~t~~~~a~a~~~i 242 (320)
++|++|++||||||||+|||+||+++|+|+|+.++++...+.+++++++.++++++|++|++ +||+|+||+|++++++
T Consensus 160 v~~~~V~~~ViGeHG~s~vp~~S~~~V~G~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~--~kG~t~~~~a~a~~~i 237 (306)
T cd05291 160 VDPRSVHAYVLGEHGDSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIIN--GKGATYYGIATALARI 237 (306)
T ss_pred CCHHHCEEEEEECCCCCEEEEEEEEEECCEEHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH--CCCCCCHHHHHHHHHH
T ss_conf 99556334688546894562135304888989996124689988999999999976888861--3678501589999999
Q ss_pred HHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 554528897499999997364475634788769997872288847999889999999999999999999
Q gi|254781048|r 243 AESYLKNKKNLLPCAAHLSGQYGVEGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATVDLCNS 311 (320)
Q Consensus 243 i~aIl~~~~~v~~~s~~~~g~yg~~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~~~~~~ 311 (320)
+++|++|++.++|||++++|+||.+|+|||+||+||++||+++++++|+++|+++|++|++.||+.++.
T Consensus 238 ~~ail~d~~~v~~vs~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~l~L~~~E~~~l~~sa~~lk~~i~~ 306 (306)
T cd05291 238 VKAILNDENAILPVSAYLDGEYGEKDVYIGVPAIIGRNGVEEVIELDLTEEEQEKFEKSADIIKENIKK 306 (306)
T ss_pred HHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 999965898079999986477787577999889983781689779999999999999999999998329
No 9
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=0 Score=648.43 Aligned_cols=307 Identities=30% Similarity=0.514 Sum_probs=292.6
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCC-CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 98728998898136899999995799-86999965788128988307620544688756852697488378978999556
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKL-GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l-~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
+++||+|||+|+||+++||+++++++ +||+|+|+++++++|+++||+|++++.+ .+++..++||++++|||+||||||
T Consensus 2 ~r~Kv~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~h~~~~~~-~~~v~~~~d~~~~~~aDvVVitAG 80 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLK-NPKIEADKDYSVTANSKVVIVTAG 80 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCC-CCEEEECCCHHHHCCCCEEEECCC
T ss_conf 9886999897888999999999669988799993889833268888660401279-855993799999689999998899
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 66676557467899889999999976541266740887148420789999884499865611000525689999999997
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQE 160 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~ 160 (320)
.||||||+|+|||+.|++|++++++++++++|+++++++|||||+|||++|+.||||++||||+||+|||+|||+++|++
T Consensus 81 ~~~k~g~~R~dLl~~N~~I~~~i~~~i~~~~p~~ivivvsNPvDv~t~~~~k~sg~p~~rviG~gt~LDs~R~~~~la~~ 160 (312)
T cd05293 81 ARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAER 160 (312)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHH
T ss_conf 99998988899999889999999999884199846996689189999999996299822678720418789999999999
Q ss_pred CCCCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCCC--CHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHH
Q ss_conf 1987335505675078852465102354477015543001587--87679999845510158888751576543220323
Q gi|254781048|r 161 FGVSVESVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKLGWT--TQEKIDQIVKRTREGGAEIVGLLRSGSAYYAPASS 238 (320)
Q Consensus 161 l~v~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~~--~~~~~~~l~~~v~~~g~~ii~~~~kg~t~~~~a~a 238 (320)
++++|++|++||||||||+|||+||+++++|+|+.++.+.... +++.++++.++++++|++|++ +||+|+||+|.+
T Consensus 161 l~v~~~~V~~~ViGeHGds~vp~wS~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~--~KG~t~~~ia~a 238 (312)
T cd05293 161 LGVAPSSVHGWIIGEHGDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIK--LKGYTSWAIGLS 238 (312)
T ss_pred HCCCHHHCCCEEEECCCCCEEEEECCCEECCEEHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHC--CCCCCCHHHHHH
T ss_conf 698944352447734788367631145588699899622117766789999999988434788865--677620677899
Q ss_pred HHHHHHHHHCCCCEEEEEEEEECCCCCC-CCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2344554528897499999997364475-634788769997872288847999889999999999999999999
Q gi|254781048|r 239 AIAIAESYLKNKKNLLPCAAHLSGQYGV-EGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATVDLCNS 311 (320)
Q Consensus 239 ~~~ii~aIl~~~~~v~~~s~~~~g~yg~-~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~~~~~~ 311 (320)
+++++++|++|++.++|||++++|+||+ +++|+|+||+||++||+++++++|+++||++|++||+.|++..++
T Consensus 239 ~~~iv~ail~d~~~vlpvs~~~~g~YGi~~~v~~svP~vig~~Gv~~i~el~L~~~E~~~l~~Sa~~i~ev~k~ 312 (312)
T cd05293 239 VADLVDAILRNTGRVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIKQPLTEEEQEKLQKSADTLWEVQKQ 312 (312)
T ss_pred HHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999998568984999999754466887887999988984680389838999999999999999999999609
No 10
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent; InterPro: IPR011275 This entry contains bacterial and archaeal malate dehydrogenases, which convert malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterised , and have been used to determine members of this group. ; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=100.00 E-value=0 Score=655.87 Aligned_cols=304 Identities=53% Similarity=0.929 Sum_probs=298.9
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCC-EEEEEEC--CCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEEC
Q ss_conf 87289988981368999999957998-6999965--78812898830762054468875685269748837897899955
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLG-DVVLLDI--VDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTA 79 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~-ei~L~D~--~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVita 79 (320)
+.||+|||||+||+|.||+++.+.|+ |++|+|+ -|+-.+|.|+||-.+++...|..++++++||+|.+|+|||||||
T Consensus 1 RkKisvIGAGfvGaTTAf~lA~KeLard~VLlDiPqvEg~pqGKALDmyEasPv~gFD~kvTGtnnYaDTAnSDivViTa 80 (308)
T TIGR01763 1 RKKISVIGAGFVGATTAFLLAEKELARDVVLLDIPQVEGVPQGKALDMYEASPVEGFDVKVTGTNNYADTANSDIVVITA 80 (308)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCHHHCCCCEEEECC
T ss_conf 95589970686125899999867406716898505558688863322110277663112362578700211883799816
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 66667655746789988999999997654126674088714842078999988449986561100052568999999999
Q gi|254781048|r 80 GIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQ 159 (320)
Q Consensus 80 g~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~ 159 (320)
|.||||||||.||+..|++|+|++..++.+|+||+++++++||+|+|||++|+.||||++||||....|||+|||+|+|.
T Consensus 81 G~pRKPGMsReDL~s~Na~I~R~v~~~i~~~Spn~iIvvv~NPlDaMTy~a~~~SGfPKERVIG~aGVLD~ARfRtFiA~ 160 (308)
T TIGR01763 81 GLPRKPGMSREDLVSVNADIVREVTSRIVEYSPNAIIVVVSNPLDAMTYVAYKKSGFPKERVIGQAGVLDAARFRTFIAM 160 (308)
T ss_pred CCCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHH
T ss_conf 78875478878998613346899999997318996899971805789999997158974213236661012556778888
Q ss_pred HCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 71987335505675078852465102354477015543001587876799998455101588887515765432203232
Q gi|254781048|r 160 EFGVSVESVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLLRSGSAYYAPASSA 239 (320)
Q Consensus 160 ~l~v~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~~kg~t~~~~a~a~ 239 (320)
.+|++.+||+++|+|+|||.|||+-.+++++|+|+.+++ +.|.+++|.||+|++|.||++++++||++|+||+++
T Consensus 161 ElgvSv~DVta~vlGGHGD~MVPlvryst~~GIPv~~lI-----~~eRia~iVERTRkGGgEIVNlLk~GSAyYAPAas~ 235 (308)
T TIGR01763 161 ELGVSVKDVTAFVLGGHGDEMVPLVRYSTVAGIPVEELI-----AKERIAEIVERTRKGGGEIVNLLKQGSAYYAPAASV 235 (308)
T ss_pred HHCCCCEEEEEEEECCCCCCCCCCCCCCEECCCCHHHCC-----CHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHH
T ss_conf 716731110054515747664155530001166556717-----653588872200588713650046887212147789
Q ss_pred HHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 344554528897499999997364475634788769997872288847999889999999999999999999
Q gi|254781048|r 240 IAIAESYLKNKKNLLPCAAHLSGQYGVEGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATVDLCNS 311 (320)
Q Consensus 240 ~~ii~aIl~~~~~v~~~s~~~~g~yg~~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~~~~~~ 311 (320)
++|++||+.|+|+++||.+||+|+||++|+|+|+|+++|++|+|+|+||+|+++|.++|++||+.+++.++.
T Consensus 236 ~eMVEailkD~kRVlp~aayL~GqYG~~giy~GVPvilG~nGvE~I~El~L~~~e~alLnkSak~V~~~~k~ 307 (308)
T TIGR01763 236 VEMVEAILKDKKRVLPVAAYLEGQYGLDGIYLGVPVILGKNGVEKILELKLDEEELALLNKSAKAVKEVLKV 307 (308)
T ss_pred HHHHHHHHHCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999882686032188995164374666785215887895026885047978999999899999987313
No 11
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00 E-value=0 Score=646.54 Aligned_cols=300 Identities=59% Similarity=1.019 Sum_probs=292.4
Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCCCCC
Q ss_conf 89988981368999999957998699996578812898830762054468875685269748837897899955666676
Q gi|254781048|r 6 IALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIPRKP 85 (320)
Q Consensus 6 V~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~~~~ 85 (320)
|+|||+|+||+++||++++++++||+|+|+++++++|+++||+|++++.++.+++..++||++++|||+||+|||.||+|
T Consensus 1 V~IIGaG~VG~~~a~~l~~~~~~el~L~D~~~~~a~g~a~DL~~~~~~~~~~~~v~~~~d~~~~~daDvvVitaG~~~k~ 80 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVVITAGIPRKP 80 (300)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCEEEEECCCCCCC
T ss_conf 98989688899999999857996799980999800579887761320158985899478879947998999906778998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 55746789988999999997654126674088714842078999988449986561100052568999999999719873
Q gi|254781048|r 86 SMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQEFGVSV 165 (320)
Q Consensus 86 g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~l~v~~ 165 (320)
||+|+||++.|++|++++++++.+++|+++++++|||||+|||+++|.||||++||||+||+|||+|||++||++++++|
T Consensus 81 g~tR~dLl~~N~~I~~~i~~~i~~~~p~~i~lvvsNPvDv~t~~~~k~sg~p~~rviG~gt~LDs~R~r~~la~~l~v~~ 160 (300)
T cd01339 81 GMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGVSV 160 (300)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHHHHCCCH
T ss_conf 99889999988999999999999659984899827938999999999729884552333311788999999999959995
Q ss_pred CCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 35505675078852465102354477015543001587876799998455101588887515765432203232344554
Q gi|254781048|r 166 ESVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLLRSGSAYYAPASSAIAIAES 245 (320)
Q Consensus 166 ~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~~kg~t~~~~a~a~~~ii~a 245 (320)
++|++||||||||+|||+||+++|+|+|+.+++ +++.++++.+++|++|++|+++++||+|+||+|.++++++++
T Consensus 161 ~~V~~~ViGeHGds~vp~wS~~~v~G~~~~~~~-----~~~~~~~i~~~v~~~g~~ii~~kgkgst~~~ia~a~~~iv~a 235 (300)
T cd01339 161 KDVQAMVLGGHGDTMVPLPRYSTVGGIPLTELI-----TKEEIDEIVERTRNGGAEIVNLLKTGSAYYAPAAAIAEMVEA 235 (300)
T ss_pred HHCEEEEEECCCCCEEEEEEEEEECCCCHHHHC-----CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 460676665478856765677588883267867-----988899999999854999998625572666399999999999
Q ss_pred HHCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 52889749999999736447563478876999787228884799988999999999999999999
Q gi|254781048|r 246 YLKNKKNLLPCAAHLSGQYGVEGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATVDLCN 310 (320)
Q Consensus 246 Il~~~~~v~~~s~~~~g~yg~~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~~~~~ 310 (320)
|++|++.++|||++++|+||++|+|+|+||+||++|++++++++|+++||++|++|++.||+.++
T Consensus 236 Il~d~~~v~pvs~~~~g~yG~~~v~~s~P~~ig~~Gv~~i~~l~L~~~E~~~l~~sa~~ik~~ie 300 (300)
T cd01339 236 ILKDKKRVLPCSAYLEGEYGIKDIFVGVPVVLGKNGVEKIIELDLTDEEKEAFDKSVESVKELID 300 (300)
T ss_pred HHCCCCCEEEEEEEECCCCCCCCEEEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 96478978999998447778604799989998588318985899999999999999999998629
No 12
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=0 Score=642.58 Aligned_cols=311 Identities=42% Similarity=0.757 Sum_probs=297.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCC-EEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCC
Q ss_conf 7289988981368999999957998-699996578812898830762054468875685269748837897899955666
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLG-DVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIP 82 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~-ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~ 82 (320)
.||+|||+|+||+++||+++.++++ |++|+|+++++++|+++||+|++++.+...++...++|++|+|||+||||||.|
T Consensus 1 ~KV~viGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p 80 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP 80 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHCCHHHCCHHCCCCEEEECCCCHHHHCCCCEEEEECCCC
T ss_conf 93999898747899999996255566599997466656401102533400026761883478702316998999968888
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 67655746789988999999997654126674088714842078999988449986561100052568999999999719
Q gi|254781048|r 83 RKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQEFG 162 (320)
Q Consensus 83 ~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~l~ 162 (320)
|||||||+||+..|++|++++++++++++||++++|+|||||+|||++||+||||++||||+||.|||+|||++||++++
T Consensus 81 rKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~~k~sg~p~~rvig~gt~LDs~R~~~~lae~~~ 160 (313)
T COG0039 81 RKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIAMKFSGFPKNRVIGSGTVLDSARFRTFLAEKLG 160 (313)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHC
T ss_conf 99899779999865999999999999659972999945947889999999639984446535446889999999999859
Q ss_pred CCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 87335505675078852465102354477015543001587876799998455101588887515765432203232344
Q gi|254781048|r 163 VSVESVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLLRSGSAYYAPASSAIAI 242 (320)
Q Consensus 163 v~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~~kg~t~~~~a~a~~~i 242 (320)
++|++|++||||||||+|||+||+++|+|+|+.++++. ...++++++++++|++|++|++.+|.| |+||||.+++++
T Consensus 161 v~~~~v~~~ViGeHGdt~vp~~S~a~v~G~pl~~~~~~--~~~~~~~~i~~~v~~~g~eII~~kG~~-t~~~~A~a~a~~ 237 (313)
T COG0039 161 VSPKDVHAYVIGEHGDTMVPLWSQATVGGKPLEELLKE--DTEEDLEELIERVRNAGAEIIEAKGAG-TYYGPAAALARM 237 (313)
T ss_pred CCHHHCEEEEECCCCCCEEEEEEEEEECCEEHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
T ss_conf 89667215683167883677413315887888997600--307689999999986289999741760-056699999999
Q ss_pred HHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 554528897499999997364475634788769997872288847999889999999999999999999997655
Q gi|254781048|r 243 AESYLKNKKNLLPCAAHLSGQYGVEGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATVDLCNSCTKLVP 317 (320)
Q Consensus 243 i~aIl~~~~~v~~~s~~~~g~yg~~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~~~~~~~~~l~~ 317 (320)
+++|++|+++|+|+|++++|+||++|+|+|+||++|++|++++++++|+++||++|++|++.+++.++.+.+++.
T Consensus 238 ~~ail~d~~~vl~~s~~l~G~yg~~dv~~gvP~~lg~~Gv~~iie~~l~~~E~~~l~~s~~~lk~~i~~~~~~~~ 312 (313)
T COG0039 238 VEAILRDEKRVLPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILELLLSDDEQEKLDKSAEELKKNIELVKELVL 312 (313)
T ss_pred HHHHHCCCCCEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999974778568787753576676875998568986897279845888989999999999999999999987514
No 13
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=100.00 E-value=0 Score=639.08 Aligned_cols=303 Identities=32% Similarity=0.590 Sum_probs=290.1
Q ss_pred EEEEECC-CCHHHHHHHHHHHCCC-CEEEEEECCC--CCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 2899889-8136899999995799-8699996578--8128988307620544688756852697488378978999556
Q gi|254781048|r 5 KIALIGS-GMIGGTLAHLAVLKKL-GDVVLLDIVD--GMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 5 KV~IIGa-G~VG~~~a~~~~~~~l-~ei~L~D~~~--~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
||+|||| |+||+++||+++++++ +||+|+|+++ ++++|+++||+|+.++.++.+++..++||++++||||||||||
T Consensus 2 KV~IiGAaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~d~~~~~daDivVitAG 81 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDIVIITAG 81 (309)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEHHHHCCCCCCCCCCEEEECCCHHHHCCCCEEEECCC
T ss_conf 89999999769999999998379987599960556434231123554503433688767982798899689999998789
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 66676557467899889999999976541266740887148420789999884499865611000525689999999997
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQE 160 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~ 160 (320)
.||||||||+|||+.|++|++++++++++++|+++++++|||||+|||++||.+|||++||||+||.|||+|||++||++
T Consensus 82 ~~rk~g~tR~dLl~~Na~I~~~i~~~i~~~~p~~ivivvtNPvDv~t~~~~k~sg~p~~rviG~gt~LDs~R~r~~la~~ 161 (309)
T cd05294 82 VPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKALKESGFDKNRVFGLGTHLDSLRFKVAIAKH 161 (309)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCHHCEEEECCHHHHHHHHHHHHHH
T ss_conf 88995998789999899999999987642699849997689657799999996698820388712138778999999999
Q ss_pred CCCCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 19873355056750788524651023544770155430015878767999984551015888875157654322032323
Q gi|254781048|r 161 FGVSVESVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLLRSGSAYYAPASSAI 240 (320)
Q Consensus 161 l~v~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~~kg~t~~~~a~a~~ 240 (320)
++++|++|++||||||||||||+||+++++|+|+.++.+. ...+++++.++++++|++|++ +||+|+||+|.+++
T Consensus 162 l~v~~~~V~~~ViGeHGds~vp~~S~~~v~G~pl~~~~~~---~~~~~~~i~~~v~~~g~~Ii~--~KG~t~~~ia~a~~ 236 (309)
T cd05294 162 FNVHISEVHTRIIGEHGDSMVPLISSTSIGGIPIKRFPEY---KDFDVEKIVETVKNAGQNIIS--LKGGSEYGPASAIS 236 (309)
T ss_pred HCCCHHHCEEEEEECCCCCEEEEEEECEECCEEHHHHCCC---CHHHHHHHHHHHHHHHHHHHH--CCCCCHHHHHHHHH
T ss_conf 6949667244688458995554202046998997884024---402399999999876799870--65740579999999
Q ss_pred HHHHHHHCCCCEEEEEEEEECCCC-CCCCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 445545288974999999973644-756347887699978722888479998899999999999999999999
Q gi|254781048|r 241 AIAESYLKNKKNLLPCAAHLSGQY-GVEGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATVDLCNSC 312 (320)
Q Consensus 241 ~ii~aIl~~~~~v~~~s~~~~g~y-g~~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~~~~~~~ 312 (320)
+++++|++|++.++|||++++||| |.+|+|+|+||+||++||+++++++||++||++|++|++.||+.++++
T Consensus 237 ~iv~aIl~d~~~v~~~s~~l~gey~g~~~v~~s~P~~ig~~Gve~i~~l~L~~~E~~~l~~Sa~~ik~~~~~v 309 (309)
T cd05294 237 NLVRTIANDERRILTVSTYLEGEIDGIRDVCIGVPVKLGKNGIEEIVPIEMDDDEREAFRKSAEIVKKYTREV 309 (309)
T ss_pred HHHHHHHCCCCEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999997699859999988457647736779999999827946999589999999999999999999998409
No 14
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=100.00 E-value=0 Score=635.15 Aligned_cols=299 Identities=37% Similarity=0.649 Sum_probs=286.0
Q ss_pred EEEECCCCHHHHHHHHHHHCCC-CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCCCC
Q ss_conf 8998898136899999995799-869999657881289883076205446887568526974883789789995566667
Q gi|254781048|r 6 IALIGSGMIGGTLAHLAVLKKL-GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIPRK 84 (320)
Q Consensus 6 V~IIGaG~VG~~~a~~~~~~~l-~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~~~ 84 (320)
|+|||+|+||+++||+++++++ +||+|+|+++++++|+++||+|++++... ..+..+++|++++|||+||+|||.|||
T Consensus 1 V~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~~~~~~~~~-~~~~~~~~~~~~~daDvvVitaG~~rk 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLAT-GTIVRGGDYADAADADIVVITAGAPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCC-CEEECCCCHHHHCCCCEEEECCCCCCC
T ss_conf 9898968899999999986799887999818998115688887725634688-539827988996799999987898999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 65574678998899999999765412667408871484207899998844998656110005256899999999971987
Q gi|254781048|r 85 PSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQEFGVS 164 (320)
Q Consensus 85 ~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~l~v~ 164 (320)
|||+|+||++.|++|++++++++++++|+++++++|||||+||+++++.||||++||||+||+|||+|||++||++++++
T Consensus 80 pg~tR~dll~~Na~I~k~i~~~i~~~~p~~ivivvtNPvDv~t~~~~k~sg~p~~rviG~gT~LDs~R~~~~la~~l~v~ 159 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVD 159 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCHHHEEECCCHHHHHHHHHHHHHHHCCC
T ss_conf 79988999998889999999999841997189985796699999999961988442875365489999999998761989
Q ss_pred CCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 33550567507885246510235447701554300158787679999845510158888751576543220323234455
Q gi|254781048|r 165 VESVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLLRSGSAYYAPASSAIAIAE 244 (320)
Q Consensus 165 ~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~~kg~t~~~~a~a~~~ii~ 244 (320)
|++|++||||||||+|||+||+++++|+|+.++.+. ..++++++.++++++|++|++ +||+|+||||.+++++++
T Consensus 160 ~~~V~~~ViGeHGds~vp~~S~~~v~G~~~~~~~~~---~~~~~~~i~~~v~~~g~~Ii~--~KG~t~~~ia~a~~~i~~ 234 (300)
T cd00300 160 PQSVHAYVLGEHGDSQVVAWSTATVGGLPLEELAPF---TKLDLEAIEEEVRTSGYEIIR--LKGATNYGIATAIADIVK 234 (300)
T ss_pred CCCCCCEEEECCCCCEEEECCCCEECCEEHHHHCCC---CHHHHHHHHHHHHHCHHHHHH--CCCCCCHHHHHHHHHHHH
T ss_conf 000556255257883576220057998997996778---777899999999723254542--468776589999999999
Q ss_pred HHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 452889749999999736447563478876999787228884799988999999999999999999
Q gi|254781048|r 245 SYLKNKKNLLPCAAHLSGQYGVEGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATVDLCN 310 (320)
Q Consensus 245 aIl~~~~~v~~~s~~~~g~yg~~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~~~~~ 310 (320)
+|++|++.++|||++++|+||++|+|||+||+||++|++++++++|+++||++|++|++.+|+.++
T Consensus 235 ail~d~~~v~~vs~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~l~L~~~E~~~l~~sa~~ik~~i~ 300 (300)
T cd00300 235 SILLDERRVLPVSAVQEGQYGIEDVALSVPAVVGREGVVRILEIPLTEDEEAKLQKSAEALKEVLN 300 (300)
T ss_pred HHHCCCCCEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 986046978999999647778877899999898548047981899999999999999999998609
No 15
>KOG1495 consensus
Probab=100.00 E-value=0 Score=592.80 Aligned_cols=308 Identities=29% Similarity=0.522 Sum_probs=295.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCC-EEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 987289988981368999999957998-6999965788128988307620544688756852697488378978999556
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLG-DVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~-ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
+..||+|+|+|+||.++|+.+++++++ |++|+|.+++|++|++|||+|+++|.. .+++..++||+..+|+++||||||
T Consensus 19 ~~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~-~~~V~~~~Dy~~sa~S~lvIiTAG 97 (332)
T KOG1495 19 KHNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLS-TPNVVASKDYSVSANSKLVIITAG 97 (332)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHCCCCCCCC-CCCEEECCCCCCCCCCCEEEEECC
T ss_conf 6744899824648899999999750334069886272033212540002330026-883676676323479868999567
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 66676557467899889999999976541266740887148420789999884499865611000525689999999997
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQE 160 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~ 160 (320)
..+++|+||++|++.|..||+.+.+.+.+|.|+++++++|||||+|||++||.||||++||||+||.|||+|||++++++
T Consensus 98 arq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~wKLSgfP~nRViGsGcnLDsaRFryLi~~~ 177 (332)
T KOG1495 98 ARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVTWKLSGFPKNRVIGSGCNLDSARFRYLIGNR 177 (332)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHH
T ss_conf 77898717899999889999998788850488708999658037888888987189623355667675389999999987
Q ss_pred CCCCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCCCC--HHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHH
Q ss_conf 19873355056750788524651023544770155430015878--7679999845510158888751576543220323
Q gi|254781048|r 161 FGVSVESVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKLGWTT--QEKIDQIVKRTREGGAEIVGLLRSGSAYYAPASS 238 (320)
Q Consensus 161 l~v~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~~~--~~~~~~l~~~v~~~g~~ii~~~~kg~t~~~~a~a 238 (320)
++++|+++|+|||||||||.||+||.+.|+|.++.++.+..+.. ++.++++.+++.+++||||++ ||+|+|+||.+
T Consensus 178 Lg~~pss~hgwIiGEHGdSsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayevikl--KGyTswaIgls 255 (332)
T KOG1495 178 LGVHPSSCHGWIIGEHGDSSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKL--KGYTSWAIGLS 255 (332)
T ss_pred HCCCCCCCEEEEEECCCCCCCEECCCCCCCCEEHHHHCHHHCCCCCHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_conf 0889433347886136775442214661344577671701167887899999999988889999975--47327888877
Q ss_pred HHHHHHHHHCCCCEEEEEEEEECCCCCCC-CEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23445545288974999999973644756-347887699978722888479998899999999999999999999
Q gi|254781048|r 239 AIAIAESYLKNKKNLLPCAAHLSGQYGVE-GFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATVDLCNSC 312 (320)
Q Consensus 239 ~~~ii~aIl~~~~~v~~~s~~~~g~yg~~-~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~~~~~~~ 312 (320)
+++++++|++|+++++|+|+.++|+||+. ++|+|+||++|++|+.++++.+|+++|+++|++||+.+.+.++++
T Consensus 256 va~l~~ail~n~~~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv~~~Lt~~E~akL~kSa~tl~~~q~~l 330 (332)
T KOG1495 256 VADLAQAILRNLRRIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVVKQKLTDEEVAKLKKSAKTLLEAQKSL 330 (332)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEECCEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999997176722232312211027887559962026068753456305689799999999899999998731
No 16
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=0 Score=557.80 Aligned_cols=305 Identities=23% Similarity=0.323 Sum_probs=275.9
Q ss_pred EEEEECC-CCHHHHHHHHHHHCCC-CE-----EEEEECCC--CCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEE
Q ss_conf 2899889-8136899999995799-86-----99996578--81289883076205446887568526974883789789
Q gi|254781048|r 5 KIALIGS-GMIGGTLAHLAVLKKL-GD-----VVLLDIVD--GMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVC 75 (320)
Q Consensus 5 KV~IIGa-G~VG~~~a~~~~~~~l-~e-----i~L~D~~~--~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDiv 75 (320)
||+|||| |+||+++||+++++.+ .+ |+|+|+.+ ++++|++|||+|++... .......+++|++++|||+|
T Consensus 2 KV~IiGA~G~IG~~la~~l~~~~l~g~~~~i~l~L~Di~~~~~~~~G~~mdl~~~a~~~-~~~v~~~~~~~~~~~~aDvV 80 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPL-LKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCC-CCCEEECCCHHHHHCCCCEE
T ss_conf 89998999789999999997286369986008999758886555314878665346655-58748428858983799889
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHH
Q ss_conf 995566667655746789988999999997654126-6740887148420789999884499865611000525689999
Q gi|254781048|r 76 IVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYA-PNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFR 154 (320)
Q Consensus 76 Vitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~ 154 (320)
|||||.||||||||+||+..|++|++++++.+++++ |+++++++|||+|+|||+++|.+|++++|+||+||.|||+|||
T Consensus 81 iitaG~prkpG~tR~DLl~~N~~I~k~~~~~i~~~a~p~~~vivvsNPvD~~~~v~~k~sg~~~~~~i~~~t~LDsaR~r 160 (323)
T cd00704 81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIALKNAPNLPPKNFTALTRLDHNRAK 160 (323)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHH
T ss_conf 98278788999827999987489999999999851799838999578646899999997699982479996527999999
Q ss_pred HHHHHHCCCCCCCCEEE-EECCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCC-
Q ss_conf 99999719873355056-7507885246510235447701554300158787679999845510158888751576543-
Q gi|254781048|r 155 YFLAQEFGVSVESVTAL-VLGSHGDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLLRSGSAY- 232 (320)
Q Consensus 155 ~~ia~~l~v~~~~V~~~-ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~~kg~t~- 232 (320)
++||++++++|++|+++ |||||||||||+||+++|+|.|+.++++.....+...+++.++++++|+||++. ||+|+
T Consensus 161 ~~la~~l~v~~~~V~~~iI~GeHGds~vp~~s~a~V~G~p~~~~~~~~~~~~~~~~e~~~~v~~~g~eIi~~--kg~ts~ 238 (323)
T cd00704 161 AQVARKLGVRVSDVKNVIIWGNHSNTQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKK--RGASSA 238 (323)
T ss_pred HHHHHHHCCCHHHCEEEEEEECCCCCEEECCCCCEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH--CCCCHH
T ss_conf 999999783978927879998786867863010889877067863114565889989999998429999982--285568
Q ss_pred CCCHHHHHHHHHHHHCC--CCEEEEEEEEECCC-CCC-CCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 22032323445545288--97499999997364-475-634788769997872288847999889999999999999999
Q gi|254781048|r 233 YAPASSAIAIAESYLKN--KKNLLPCAAHLSGQ-YGV-EGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATVDL 308 (320)
Q Consensus 233 ~~~a~a~~~ii~aIl~~--~~~v~~~s~~~~g~-yg~-~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~~~ 308 (320)
+++|.++++++++++++ +..++|++++++|+ ||+ +|+|||+||++|++||+++++++||++|+++|++|++.+++.
T Consensus 239 ~s~a~a~~~~~~~~~~~~~~~~~~s~~v~~~g~~yGi~~gv~~s~P~~ig~~Gve~V~el~L~e~E~~~l~~S~~~L~ee 318 (323)
T cd00704 239 ASAAKAIADHVKDWLFGTPPGEIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVEDLKLNDWLREKLKATEEELIEE 318 (323)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 89999999999998528888868989998288667888887999869994998999826789999999999999999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254781048|r 309 CNSC 312 (320)
Q Consensus 309 ~~~~ 312 (320)
.+-+
T Consensus 319 ~~~a 322 (323)
T cd00704 319 KEIA 322 (323)
T ss_pred HHHH
T ss_conf 9843
No 17
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=0 Score=543.14 Aligned_cols=295 Identities=28% Similarity=0.459 Sum_probs=254.1
Q ss_pred EEEEECC-CCHHHHHHHHHHHCCC-CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEEECCC
Q ss_conf 2899889-8136899999995799-869999657881289883076205446887568526974-883789789995566
Q gi|254781048|r 5 KIALIGS-GMIGGTLAHLAVLKKL-GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIVTAGI 81 (320)
Q Consensus 5 KV~IIGa-G~VG~~~a~~~~~~~l-~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVitag~ 81 (320)
||+|||| |+||+++||+++++++ +||+|+|+++ ++|+++||+|......... ....+++ ++++||||||||||.
T Consensus 2 KV~IIGA~G~VG~~~A~~l~~~~~~~elvLiDi~~--~~g~a~DL~h~~~~~~v~~-~~~~~~~~~~l~daDiVVitAG~ 78 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVN--TPGVAADLSHINTPAKVTG-YLGPEELKKALKGADVVVIPAGV 78 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCC--CHHHHHHHHCCCCCCCEEE-EECCCCHHHHHCCCCEEEECCCC
T ss_conf 89999999818999999997299977699982774--2667553216565685125-70887466774799999987898
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHH----HHHCCCCHHHHHHHCCCHHHHHHHHHH
Q ss_conf 6676557467899889999999976541266740887148420789999----884499865611000525689999999
Q gi|254781048|r 82 PRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWAL----QKFSGLPSHMVVGMAGILDSARFRYFL 157 (320)
Q Consensus 82 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~----~~~sg~~~~rViG~Gt~LDs~R~~~~i 157 (320)
||||||||+||++.|++|++++++++++++|+++++++|||||+|||++ ++.+|||++||||+ |.|||+|||++|
T Consensus 79 ~rkpG~tR~dLl~~N~~I~k~i~~~i~~~~p~aiiivvtNPvD~lt~i~~~~~k~~~~~p~~rViG~-T~LDsaR~r~~l 157 (310)
T cd01337 79 PRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGV-TTLDVVRANTFV 157 (310)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEE-EEHHHHHHHHHH
T ss_conf 8997989899987407889999999982099849999708347799999999998179981207876-508889999999
Q ss_pred HHHCCCCCCCCEEEEECCC-CCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHH-CCCCCCCCC
Q ss_conf 9971987335505675078-85246510235447701554300158787679999845510158888751-576543220
Q gi|254781048|r 158 AQEFGVSVESVTALVLGSH-GDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLL-RSGSAYYAP 235 (320)
Q Consensus 158 a~~l~v~~~~V~~~ViGeH-Gds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~ 235 (320)
|++++++|++|++||+||| |++|||+||++++.. .+++++++++.+++|++|+||++.+ +||+|+|++
T Consensus 158 a~~l~v~~~~V~a~ViGeH~g~s~vPl~s~~~~~~----------~~~~~~~~~i~~~v~~~g~eIi~~k~g~Gsa~~~~ 227 (310)
T cd01337 158 AELLGLDPAKVNVPVIGGHSGVTILPLLSQCQPPF----------TFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSM 227 (310)
T ss_pred HHHHCCCHHHCEEEEECCCCCCCEEEEECCCCCCC----------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 99959787770667987569875787502686767----------78999999999999986899998504877230788
Q ss_pred HHHHHHHHHHHHC---CCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEECC-CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3232344554528---8974999999973644756347887699978722888479-99889999999999999999999
Q gi|254781048|r 236 ASSAIAIAESYLK---NKKNLLPCAAHLSGQYGVEGFYVGVPVVIGHKGVEKIVEL-NLSFDEKDAFQKSVKATVDLCNS 311 (320)
Q Consensus 236 a~a~~~ii~aIl~---~~~~v~~~s~~~~g~yg~~~v~~s~P~vig~~Gi~~i~~l-~Ls~~E~~~l~~sa~~i~~~~~~ 311 (320)
|+++++++++|++ +++.+.+|+ ++.++ +..+.|||+||+||++||++++++ +|+++|+++|++|++.+|+.++.
T Consensus 228 a~a~~~~v~~il~~i~~~~~v~~~~-~v~~~-~~~~~y~svP~~iG~~Gve~iielp~L~~~E~~~l~~S~~~lk~~I~k 305 (310)
T cd01337 228 AYAGARFANSLLRGLKGEKGVIECA-YVESD-VTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELKKNIEK 305 (310)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEE-EEEEC-CCCCEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 8899999999999853998862658-99626-777479999899934816898268999999999999999999999997
Q ss_pred HHHH
Q ss_conf 9976
Q gi|254781048|r 312 CTKL 315 (320)
Q Consensus 312 ~~~l 315 (320)
..+-
T Consensus 306 ~~~f 309 (310)
T cd01337 306 GVDF 309 (310)
T ss_pred HHCC
T ss_conf 7412
No 18
>PTZ00325 malate dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=538.05 Aligned_cols=298 Identities=29% Similarity=0.386 Sum_probs=264.2
Q ss_pred CEEEEECC-CCHHHHHHHHHHHCCCC-EEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCC
Q ss_conf 72899889-81368999999957998-69999657881289883076205446887568526974883789789995566
Q gi|254781048|r 4 NKIALIGS-GMIGGTLAHLAVLKKLG-DVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGI 81 (320)
Q Consensus 4 ~KV~IIGa-G~VG~~~a~~~~~~~l~-ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~ 81 (320)
+||+|||| |+||+++||++++++++ ||+|+|+++ ++|+++||+|+.... ..+.+...++|++++||||||+|||.
T Consensus 2 ~KV~IIGA~G~VG~s~A~~l~~~~~~~elvL~Di~~--a~g~a~Dl~~~~~~~-~~~~~~~~~~~e~~~~aDIVVitaG~ 78 (313)
T PTZ00325 2 FKVAVLGAAGGIGQPLSLLLKRNPYVSTLSLYDIVG--APGVAADLSHIPSPA-KVTGYAKGELHKAVDGADVVLIVAGV 78 (313)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCC--CHHHHHHHHCCCCCC-CCCEECCCCHHHHHCCCCEEEECCCC
T ss_conf 389998999869999999998389977799980897--266898886755535-66545279888984899899988898
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHH----HHHCCCCHHHHHHHCCCHHHHHHHHHH
Q ss_conf 6676557467899889999999976541266740887148420789999----884499865611000525689999999
Q gi|254781048|r 82 PRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWAL----QKFSGLPSHMVVGMAGILDSARFRYFL 157 (320)
Q Consensus 82 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~----~~~sg~~~~rViG~Gt~LDs~R~~~~i 157 (320)
||+|||||+||++.|++|++++++++++++|+++++++|||||+|||++ ++.+||||+||||+ |.|||+|||++|
T Consensus 79 ~rkpg~tR~dLl~~N~~I~~~i~~~i~~~~~~aiiivvtNPvD~mt~i~~~~~~~~~~~~~~rViG~-t~LDsaR~r~~l 157 (313)
T PTZ00325 79 PRKPGMTRDDLFNTNAGIVRDLVLACASSAPKAIFGIITNPVNSTVPIAAETLKKAGVYDPARLFGV-TTLDVVRARTFV 157 (313)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEE-EHHHHHHHHHHH
T ss_conf 8997896899999706999999999997699809997368247999999999997479980107764-228889999999
Q ss_pred HHHCCCCCCCCEEEEECCCC-CEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHH-CCCCCCCCC
Q ss_conf 99719873355056750788-5246510235447701554300158787679999845510158888751-576543220
Q gi|254781048|r 158 AQEFGVSVESVTALVLGSHG-DSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLL-RSGSAYYAP 235 (320)
Q Consensus 158 a~~l~v~~~~V~~~ViGeHG-ds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~ 235 (320)
|++++++|++|++||+|||| ++++|+||++.+. ++.++++++.++++++|+++++.+ +||+|+|++
T Consensus 158 a~~l~v~~~~V~a~VlGeHg~~~~vPl~s~~~~~------------~~~~~~~~i~~~~~~~g~eii~~k~gkg~t~~~~ 225 (313)
T PTZ00325 158 AEALGRSPYDVDVPVVGGHSGETIVPLLSQSPGS------------LSEEQVEQLTHRVQVGGDEVVKAKAGRGSATLSM 225 (313)
T ss_pred HHHHCCCHHHEEEEEECCCCCCEEEEECCCCCCC------------CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 9986928678077796357887187702358988------------8999999999999862898987523677489999
Q ss_pred HHHHHHHHHHHHC---CCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEECC-CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3232344554528---8974999999973644756347887699978722888479-99889999999999999999999
Q gi|254781048|r 236 ASSAIAIAESYLK---NKKNLLPCAAHLSGQYGVEGFYVGVPVVIGHKGVEKIVEL-NLSFDEKDAFQKSVKATVDLCNS 311 (320)
Q Consensus 236 a~a~~~ii~aIl~---~~~~v~~~s~~~~g~yg~~~v~~s~P~vig~~Gi~~i~~l-~Ls~~E~~~l~~sa~~i~~~~~~ 311 (320)
|.++++++.+|++ +++.++++ ++++++|+.++.|||+||+||++|+++++++ +|+++||++|++|++.||+.++.
T Consensus 226 a~a~a~~~~~i~~ai~~~~~~~~~-~~v~~~~~~~~~~lg~P~viG~~Gve~iielp~L~~~E~~~l~~Sa~~lk~~I~k 304 (313)
T PTZ00325 226 AEAGAEWTTSVLKALRGEKGPLVY-AYVETDGQPECPFFGSPVELGKNGVEKVLPIPPLNAYEEELLDKCLPDLKKNIRK 304 (313)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEE-EEEECCCCCCCEEEEEEEEEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999996499573789-9982367257099999989918978997778889999999999999999999999
Q ss_pred HHHHHHH
Q ss_conf 9976552
Q gi|254781048|r 312 CTKLVPS 318 (320)
Q Consensus 312 ~~~l~~~ 318 (320)
..+.+++
T Consensus 305 ~~~f~~~ 311 (313)
T PTZ00325 305 GLAFARS 311 (313)
T ss_pred HHHHHHC
T ss_conf 9999862
No 19
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=0 Score=537.26 Aligned_cols=306 Identities=22% Similarity=0.319 Sum_probs=270.9
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCC------CEEEEEECCC--CCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCC
Q ss_conf 9872899889-8136899999995799------8699996578--81289883076205446887568526974883789
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLKKL------GDVVLLDIVD--GMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEA 72 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~~l------~ei~L~D~~~--~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~a 72 (320)
|+-||+|||| |+||+++++.++.+.+ .++.|+|+.+ ++++|++|||+|++.... ......+++|++++||
T Consensus 1 ~p~KV~IiGAaG~IG~~la~~la~g~l~g~~~~v~l~L~Di~~~~~~l~G~amDl~~~a~~~~-~~v~~~~~~~~a~~~a 79 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLL-AEIVITDDPNVAFKDA 79 (322)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHCHHCCCCCEEEEEEECCCCCCCCCCEEEEEHHHCCCCCC-CCEEEECCHHHHHCCC
T ss_conf 970999989996899999999971113079972699997575756667657744532676545-8779748878983788
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCHHHHHHHHHHC-CCCHHHHHHHCCCHHH
Q ss_conf 789995566667655746789988999999997654126-67408871484207899998844-9986561100052568
Q gi|254781048|r 73 DVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYA-PNSFVICITNPLDAMVWALQKFS-GLPSHMVVGMAGILDS 150 (320)
Q Consensus 73 DivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~~i~ivvtNPvDv~~~~~~~~s-g~~~~rViG~Gt~LDs 150 (320)
|+||||||.||||||||+||+..|++|++++++.+.+++ |+++++++|||+|+|||++++.+ ++|++|++|+ |.|||
T Consensus 80 DvVvitaG~prkPG~tR~DLl~~Na~I~~~~~~~i~~~a~p~~~vivvsNPvd~~~~v~~k~~~~~~~~~i~~~-t~LDs 158 (322)
T cd01338 80 DWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAM-TRLDH 158 (322)
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCHHHEEEE-EHHHH
T ss_conf 78999368789989818999998689999999999975798838999578188899999997689974609996-34999
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEE-CCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCC
Q ss_conf 99999999971987335505675-07885246510235447701554300158787679999845510158888751576
Q gi|254781048|r 151 ARFRYFLAQEFGVSVESVTALVL-GSHGDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLLRSG 229 (320)
Q Consensus 151 ~R~~~~ia~~l~v~~~~V~~~Vi-GeHGds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~~kg 229 (320)
+|||++||+++|++|++|+++|+ |||||||||+||+++|+|.|+.+++..... ..+++.++++++|++|++.+|+
T Consensus 159 ~R~r~~la~~l~v~~~~V~~~vv~G~HGds~vp~~s~a~V~G~pl~~~~~d~~~---~~~e~~~~v~~~g~eIi~~kg~- 234 (322)
T cd01338 159 NRAKSQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNATIGGKPAAEVINDRAW---LEDEFIPTVQKRGAAIIKARGA- 234 (322)
T ss_pred HHHHHHHHHHHCCCHHHCEEEEEEECCCCCEEECCCCCEECCEEHHHHHCCHHH---HHHHHHHHHHCCHHHHHHHHCC-
T ss_conf 999999999849796775455897058882774212565988998995232556---6777899996469999865466-
Q ss_pred CCCCCCHHHHHHHHHHHHC--CCCEEEEEEEEECCCCCC-CCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 5432203232344554528--897499999997364475-6347887699978722888479998899999999999999
Q gi|254781048|r 230 SAYYAPASSAIAIAESYLK--NKKNLLPCAAHLSGQYGV-EGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATV 306 (320)
Q Consensus 230 ~t~~~~a~a~~~ii~aIl~--~~~~v~~~s~~~~g~yg~-~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~ 306 (320)
++.+++|.+++++++++++ ++++++|+|++++|+||+ +|+|||+||++|++||+++++++|+++|+++|++|++.++
T Consensus 235 ~s~~~~a~a~~~~~~~~~~~~~~~~i~~~~v~~~G~YGi~~~v~~s~Pv~ig~~Gve~V~el~L~~~E~~~l~~S~~~L~ 314 (322)
T cd01338 235 SSAASAANAAIDHMRDWVLGTPEGDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEGLEIDDFAREKIDATLAELL 314 (322)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 36999999999999999608778855899998356668978839999999939989994487899999999999999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254781048|r 307 DLCNSCT 313 (320)
Q Consensus 307 ~~~~~~~ 313 (320)
+..++++
T Consensus 315 ee~~~~~ 321 (322)
T cd01338 315 EEREAVK 321 (322)
T ss_pred HHHHHHC
T ss_conf 9999754
No 20
>PRK05086 malate dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=528.34 Aligned_cols=296 Identities=27% Similarity=0.437 Sum_probs=259.7
Q ss_pred EEEEECC-CCHHHHHHHHHHHC-CC-CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCC
Q ss_conf 2899889-81368999999957-99-869999657881289883076205446887568526974883789789995566
Q gi|254781048|r 5 KIALIGS-GMIGGTLAHLAVLK-KL-GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGI 81 (320)
Q Consensus 5 KV~IIGa-G~VG~~~a~~~~~~-~l-~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~ 81 (320)
||+|||| |+||+++||+++.+ .. .||+|+|+ .++++|+++||+|+...... ....+.+++++++||||||||||.
T Consensus 2 KV~IiGA~G~VG~s~A~~l~~~~~~~~el~L~Di-~~~~~G~alDL~h~~~~~~~-~~~~~~~~~~~l~~adiVvitAG~ 79 (312)
T PRK05086 2 KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDI-APVTPGVAVDLSHIPTAVKI-KGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECC-CCCCCCHHHHHHCCCCCCCC-CEEECCCHHHHHCCCCEEEECCCC
T ss_conf 8999989986999999999828987774999758-88861056565478754665-346169867871799999987898
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHH---HHHCC-CCHHHHHHHCCCHHHHHHHHHH
Q ss_conf 6676557467899889999999976541266740887148420789999---88449-9865611000525689999999
Q gi|254781048|r 82 PRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWAL---QKFSG-LPSHMVVGMAGILDSARFRYFL 157 (320)
Q Consensus 82 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~---~~~sg-~~~~rViG~Gt~LDs~R~~~~i 157 (320)
||||||||+||+..|++|++++++++++++|+++++++|||||+|||++ ++.+| ||++||||+ |.|||+|||+++
T Consensus 80 ~rkpG~tR~dLl~~Na~I~~~i~~~I~~~~p~aiiivvsNPvD~mt~ia~~~~k~~g~~~~~rv~G~-t~LDsaR~r~~l 158 (312)
T PRK05086 80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGV-TTLDVIRSETFV 158 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEE-EHHHHHHHHHHH
T ss_conf 9985898899999878999999998872089718999548327789999999998389980113333-128899999999
Q ss_pred HHHCCCCCCCCEEEEECCC-CCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHH-CCCCCCCCC
Q ss_conf 9971987335505675078-85246510235447701554300158787679999845510158888751-576543220
Q gi|254781048|r 158 AQEFGVSVESVTALVLGSH-GDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLL-RSGSAYYAP 235 (320)
Q Consensus 158 a~~l~v~~~~V~~~ViGeH-Gds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~ 235 (320)
|+++|++|++|++||+||| |++++|+||++ .|.+ +++++++++.++++++|++|++.+ ++|+|+|++
T Consensus 159 a~~l~v~~~~V~~~ViGeHg~~t~vPl~s~~--~~~~---------~~~~~~~~i~~~v~~a~~eii~~k~~~gst~~~~ 227 (312)
T PRK05086 159 AELKGKNPGEVEVPVIGGHSGVTILPLLSQV--PGVS---------FTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227 (312)
T ss_pred HHHHCCCHHHCEEEEECCCCCCCEEEEECCC--CCCC---------CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 9985948667477697235887278630028--9998---------7699999999999971689998650676055988
Q ss_pred HHHHHHHHHHHH---CCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEECC-CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 323234455452---88974999999973644756347887699978722888479-99889999999999999999999
Q gi|254781048|r 236 ASSAIAIAESYL---KNKKNLLPCAAHLSGQYGVEGFYVGVPVVIGHKGVEKIVEL-NLSFDEKDAFQKSVKATVDLCNS 311 (320)
Q Consensus 236 a~a~~~ii~aIl---~~~~~v~~~s~~~~g~yg~~~v~~s~P~vig~~Gi~~i~~l-~Ls~~E~~~l~~sa~~i~~~~~~ 311 (320)
|.++++++.+|+ ++++.+++|+ +++++ |..++|||+||+||++|+++++++ +||++||++|++|++.+|+.++.
T Consensus 228 a~a~a~~~~~i~~al~~~~~~~~~~-~v~~~-g~~~~~~s~P~~iG~~Gve~i~~l~~Ls~~E~~~l~~S~~~lk~~I~~ 305 (312)
T PRK05086 228 GQAAARFGLSLVRALQGEQGVVECA-YVEGD-GEYARFFAQPVLLGKNGVEERLPIGELSAFEQNALEGMLDTLKKDIEL 305 (312)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEE-EEECC-CCCCEEEEEEEEEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999844998734799-98148-863359999999907822798378999999999999999999999999
Q ss_pred HHHHH
Q ss_conf 99765
Q gi|254781048|r 312 CTKLV 316 (320)
Q Consensus 312 ~~~l~ 316 (320)
..+.+
T Consensus 306 g~~f~ 310 (312)
T PRK05086 306 GEEFV 310 (312)
T ss_pred HHHHH
T ss_conf 99874
No 21
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=100.00 E-value=0 Score=526.05 Aligned_cols=258 Identities=33% Similarity=0.561 Sum_probs=243.1
Q ss_pred EEEECC-CCHHHHHHHHHHHCCC---CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCC
Q ss_conf 899889-8136899999995799---869999657881289883076205446887568526974883789789995566
Q gi|254781048|r 6 IALIGS-GMIGGTLAHLAVLKKL---GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGI 81 (320)
Q Consensus 6 V~IIGa-G~VG~~~a~~~~~~~l---~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~ 81 (320)
|+|||| |+||+++||.++.++. .||+|+|+++++++|+++||+|++++.........+++|++++|||+||+|||.
T Consensus 1 V~IIGA~G~VG~~~a~~l~~~~~~~~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~v~~~~~~~~~~~daDvVVitag~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHCCCCEEEEECCC
T ss_conf 98987797799999999982899999889999589872087999998545235787399748738983799899990577
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 66765574678998899999999765412667408871484207899998844998656110005256899999999971
Q gi|254781048|r 82 PRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQEF 161 (320)
Q Consensus 82 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~l 161 (320)
||+|||+|+||++.|++|++++++++++++|+++++++|||||+|||++++.||||++||||+|| |||+|||++||+++
T Consensus 81 ~~k~g~~R~dll~~N~~I~~~i~~~i~~~~p~a~iivvtNPvdv~t~~~~~~sg~p~~~viG~gt-LDs~R~~~~la~~l 159 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGT-LDPIRFRRILAEKL 159 (263)
T ss_pred CCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEC-CHHHHHHHHHHHHH
T ss_conf 88999876566403288999998888732998369973894899999999835998302898632-47889999999985
Q ss_pred CCCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 98733550567507885246510235447701554300158787679999845510158888751576543220323234
Q gi|254781048|r 162 GVSVESVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLLRSGSAYYAPASSAIA 241 (320)
Q Consensus 162 ~v~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~~kg~t~~~~a~a~~~ 241 (320)
+++|++|++||||||||+|||+||+++ +|.++++
T Consensus 160 ~v~~~~V~~~V~GeHg~s~vp~~S~~~----------------------------------------------ia~~~~~ 193 (263)
T cd00650 160 GVDPDDVKVYILGEHGGSQVPDWSTVR----------------------------------------------IATSIAD 193 (263)
T ss_pred CCCHHHEEEEEEECCCCCEEECCCCCC----------------------------------------------HHHHHHH
T ss_conf 979789689999378797355421383----------------------------------------------9999999
Q ss_pred HHHHHHCCCCEEEEEEEEECCCCCC-CCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 4554528897499999997364475-63478876999787228884799988999999999999999999
Q gi|254781048|r 242 IAESYLKNKKNLLPCAAHLSGQYGV-EGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATVDLCN 310 (320)
Q Consensus 242 ii~aIl~~~~~v~~~s~~~~g~yg~-~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~~~~~ 310 (320)
++++|++|++.++|||++++|+||+ .|+|+|+||++|++|++++++++|+++|+++|++|++.+|+.++
T Consensus 194 ~i~ai~~d~~~i~~~s~~~~G~yg~~~~v~~s~P~~lg~~Gv~~i~~l~l~~~E~~~l~~s~~~lk~~ie 263 (263)
T cd00650 194 LIRSLLNDEGEILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIEVGLTDFELEKLQKSADTLKKELE 263 (263)
T ss_pred HHHHHHCCCCEEEEEEEEECCCCCCCCCEEEEEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 9999711888799999993576488688899999999599889997899999999999999999999619
No 22
>PRK05442 malate dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=524.74 Aligned_cols=309 Identities=24% Similarity=0.357 Sum_probs=266.3
Q ss_pred CCCC-EEEEEC-CCCHHHHHHHHHHHCCC------CEEEEEECCC--CCHHHHHHHHHHHCCCCCCCCEEE-ECCCHHHH
Q ss_conf 9987-289988-98136899999995799------8699996578--812898830762054468875685-26974883
Q gi|254781048|r 1 MKSN-KIALIG-SGMIGGTLAHLAVLKKL------GDVVLLDIVD--GMPRGKALDIAESSPVEGFGAQLC-GTSDYSDI 69 (320)
Q Consensus 1 mk~~-KV~IIG-aG~VG~~~a~~~~~~~l------~ei~L~D~~~--~~~~g~~~Dl~~~~~~~~~~~~v~-~~~d~~~l 69 (320)
|+++ ||+|+| +|++|+++++.++.+.+ -+|.|+|+.+ ++++|.+|||+||+ | ++...+. .++.|+++
T Consensus 1 m~~p~kV~I~GAaG~ig~~l~~~la~g~l~g~~~~v~l~L~Di~~~~~~l~G~ameL~d~a-~-p~l~~v~~~~~~~~a~ 78 (325)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPQAQKALKGVVMELEDCA-F-PLLAGVVITDDPKVAF 78 (325)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCHHHCCCCCCEEEEEECCCCCCCCCCEEEEEHHCCC-C-CCCCCEEEECCHHHHH
T ss_conf 9997299998888688899999986613208998469999657776665566773421167-5-4448768508878983
Q ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCHHHHHHHHHHC-CCCHHHHHHHCCC
Q ss_conf 789789995566667655746789988999999997654126-67408871484207899998844-9986561100052
Q gi|254781048|r 70 AEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYA-PNSFVICITNPLDAMVWALQKFS-GLPSHMVVGMAGI 147 (320)
Q Consensus 70 ~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~~i~ivvtNPvDv~~~~~~~~s-g~~~~rViG~Gt~ 147 (320)
+|||+||||||.||||||+|+||+..|++|++++++.+.+++ |+++++++|||+|+|||++++.+ |+|++|++|+ |.
T Consensus 79 ~~aDvviitag~prkPGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlVv~NPvd~~~~v~~k~a~~~p~~~i~~~-t~ 157 (325)
T PRK05442 79 KDADVALLVGARPRGPGMERKDLLKANGEIFTAQGKALNEVAARDVKVLVVGNPANTNALIAMKNAPDLPAKNFTAM-LR 157 (325)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCCHHHEEEE-EH
T ss_conf 79988998078679999748999976088999999999865798718999578158799999997799987998974-28
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEE-CCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 56899999999971987335505675-07885246510235447701554300158787679999845510158888751
Q gi|254781048|r 148 LDSARFRYFLAQEFGVSVESVTALVL-GSHGDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLL 226 (320)
Q Consensus 148 LDs~R~~~~ia~~l~v~~~~V~~~Vi-GeHGds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~ 226 (320)
|||+|||++||+++|++|++|+.+++ |||||||||+||+++|+|+|+.+++....+. .+++.++++++|++|++.+
T Consensus 158 LD~~R~~~~lA~~l~v~~~~V~~~iIwG~Hgdt~~p~~s~a~V~G~p~~~~i~d~~~~---~~e~~~~v~~~g~eII~~k 234 (325)
T PRK05442 158 LDHNRALSQLAAKAGVPVADIKKLVVWGNHSPTQYPDFRHATIDGKPAAELINDQAWL---EDTFIPTVQKRGAAIIEAR 234 (325)
T ss_pred HHHHHHHHHHHHHHCCCHHHCEEEEEEECCCCCEEECHHHCEECCEECHHHCCHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999792978936669997688867746578489989824413556665---5578999996089999873
Q ss_pred CCCCCCCCCHHHHH-HHHHHHHCCCCEEEEEEEEECCCCCC-CCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 57654322032323-44554528897499999997364475-63478876999787228884799988999999999999
Q gi|254781048|r 227 RSGSAYYAPASSAI-AIAESYLKNKKNLLPCAAHLSGQYGV-EGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKA 304 (320)
Q Consensus 227 ~kg~t~~~~a~a~~-~ii~aIl~~~~~v~~~s~~~~g~yg~-~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~ 304 (320)
|+++. ++.|.++. .+.++++.++++++|+|++++|+||+ +|+|||+||+++..|++.+.+++||++|+++|++|+++
T Consensus 235 g~ssa-~saa~a~~~~~~~~i~~~~~~i~s~~v~~dG~YGi~~~v~~s~Pv~~~~g~~e~V~~l~L~~~ek~~l~~S~~e 313 (325)
T PRK05442 235 GASSA-ASAANAAIDHVRDWVLGTNGDWVSMGVPSDGSYGIPEGLIFGFPVTTENGEYEIVQGLEIDAFSREKIDATLAE 313 (325)
T ss_pred CCCHH-HHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 86539-99999999999999759998179999970677788688599996998398699954777799999999999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999765
Q gi|254781048|r 305 TVDLCNSCTKLV 316 (320)
Q Consensus 305 i~~~~~~~~~l~ 316 (320)
++++.+.+++|+
T Consensus 314 L~~e~e~v~~ll 325 (325)
T PRK05442 314 LEEERDAVKHLL 325 (325)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999649
No 23
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=0 Score=487.82 Aligned_cols=305 Identities=22% Similarity=0.342 Sum_probs=263.0
Q ss_pred CCCEEEEEC-CCCHHHHHHHHHHHCCC-C-----EEEEEECC--CCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCC
Q ss_conf 987289988-98136899999995799-8-----69999657--881289883076205446887568526974883789
Q gi|254781048|r 2 KSNKIALIG-SGMIGGTLAHLAVLKKL-G-----DVVLLDIV--DGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEA 72 (320)
Q Consensus 2 k~~KV~IIG-aG~VG~~~a~~~~~~~l-~-----ei~L~D~~--~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~a 72 (320)
++-||+|+| ||++|++++++++.+.+ . +|.|+|+. .++++|.+|||+||+ |......+..++.+++++||
T Consensus 1 ~p~kV~VtGAaG~Ig~~l~~~la~g~~~g~~~~i~L~L~Di~~~~~~l~Gv~mel~d~a-~p~l~~i~~~~~~~~a~~~a 79 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCA-FPLLKSVVATTDPEEAFKDV 79 (325)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEHHHCC-CCCCCCEEECCCHHHHHCCC
T ss_conf 98199998887188999999997588568997059999667786776552674574378-64558735228878983688
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCHHHHHHHHHHC-CCCHHHHHHHCCCHHH
Q ss_conf 789995566667655746789988999999997654126-67408871484207899998844-9986561100052568
Q gi|254781048|r 73 DVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYA-PNSFVICITNPLDAMVWALQKFS-GLPSHMVVGMAGILDS 150 (320)
Q Consensus 73 DivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~~i~ivvtNPvDv~~~~~~~~s-g~~~~rViG~Gt~LDs 150 (320)
|+|||+||.||||||+|+||+..|++|++++++.+.+++ |++.++++|||+|+|||++++.+ ++|+++ |+.+|.||+
T Consensus 80 Dvvii~ag~prkpGmtR~DLl~~Na~I~k~~~~~I~~~a~p~~~viVv~NPvn~~~~i~~~~a~~~p~~~-i~~~t~LD~ 158 (325)
T cd01336 80 DVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALILLKYAPSIPKEN-FTALTRLDH 158 (325)
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCCHHH-EEEEEHHHH
T ss_conf 7899948877999982799999899999999999998614581999927935889999999779996684-998428999
Q ss_pred HHHHHHHHHHCCCCCCCCEEE-EECCCCCEEEEECCCCCC----CCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 999999999719873355056-750788524651023544----770155430015878767999984551015888875
Q gi|254781048|r 151 ARFRYFLAQEFGVSVESVTAL-VLGSHGDSMVPMLRYATV----SGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGL 225 (320)
Q Consensus 151 ~R~~~~ia~~l~v~~~~V~~~-ViGeHGds~vp~~S~~~v----~g~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~ 225 (320)
+||+++||++++++|++|+.+ |||+||+||||+||++++ +|+|+.+++....+. .+++.++++++|++|+++
T Consensus 159 ~R~~~~lA~kl~v~~~~V~~~iIwG~Hg~t~vP~~s~a~v~~~~~~~~i~~~i~d~~~~---~~e~i~~v~~rG~eIi~~ 235 (325)
T cd01336 159 NRAKSQIALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVELNGKGKPAREAVKDDAWL---NGEFISTVQKRGAAVIKA 235 (325)
T ss_pred HHHHHHHHHHHCCCHHHEEEEEEEECCCCCEEECCCCCEEECCCCCCCHHHHCCHHHHH---HHHHHHHHHHCHHHHHHH
T ss_conf 99999999985989678466799987989678630312892577871767841645666---667789986058999986
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHCCC--CEEEEEEEEECCCCCC-CCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 1576543220323234455452889--7499999997364475-634788769997872288847999889999999999
Q gi|254781048|r 226 LRSGSAYYAPASSAIAIAESYLKNK--KNLLPCAAHLSGQYGV-EGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSV 302 (320)
Q Consensus 226 ~~kg~t~~~~a~a~~~ii~aIl~~~--~~v~~~s~~~~g~yg~-~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa 302 (320)
++ +++.+++|.+++++++.++++. ++++|++++++|+||+ +|+|||+||+++.+|++.+.+++||++|+++|++|+
T Consensus 236 ~~-~ssa~saa~A~~~~~~~~~~g~~~~~~~s~~v~~~G~YGi~~gi~fs~Pv~~~~g~~eiV~~l~L~e~ek~~l~~s~ 314 (325)
T cd01336 236 RK-LSSAMSAAKAICDHVHDWWFGTPEGEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQGLSIDDFSREKIDATA 314 (325)
T ss_pred CC-CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 07-56677799999999999963998787899988727877998882899979982986999768556999999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254781048|r 303 KATVDLCNSC 312 (320)
Q Consensus 303 ~~i~~~~~~~ 312 (320)
++++++.+.+
T Consensus 315 ~eL~eE~~~a 324 (325)
T cd01336 315 KELVEEKETA 324 (325)
T ss_pred HHHHHHHHHH
T ss_conf 9999999843
No 24
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent; InterPro: IPR010097 This entry represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exist in eukaryotes. In Saccharomyces cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities.; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=100.00 E-value=0 Score=410.98 Aligned_cols=299 Identities=27% Similarity=0.447 Sum_probs=252.1
Q ss_pred EEEEECC-CCHHHHHHHHHHHC-C-CC-----------EEEEEECCCCCHHHHHHHHHHHC---CCCCCCCEEE-ECCC-
Q ss_conf 2899889-81368999999957-9-98-----------69999657881289883076205---4468875685-2697-
Q gi|254781048|r 5 KIALIGS-GMIGGTLAHLAVLK-K-LG-----------DVVLLDIVDGMPRGKALDIAESS---PVEGFGAQLC-GTSD- 65 (320)
Q Consensus 5 KV~IIGa-G~VG~~~a~~~~~~-~-l~-----------ei~L~D~~~~~~~g~~~Dl~~~~---~~~~~~~~v~-~~~d- 65 (320)
||+|+|| |.||+++++||..+ . ++ +|.|||+..+-..|++.||+|.- ...+|...-. +..|
T Consensus 1 KVAVLGA~GGIGQpLSLLLK~~Lp~~slkesnrsvthi~L~LYDi~~ea~~GVa~DLSHI~T~~~v~gf~~~~~~hkrdP 80 (379)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQLPQVSLKESNRSVTHIELSLYDIKGEAAEGVAADLSHIDTAASVKGFSGEEGDHKRDP 80 (379)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
T ss_conf 96898558642146899998517645752036505677765303456656764313442178645704468888865660
Q ss_pred -H-HHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC--EEEECCCCHHHHHHHH----HHCCCC
Q ss_conf -4-8837897899955666676557467899889999999976541266740--8871484207899998----844998
Q gi|254781048|r 66 -Y-SDIAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSF--VICITNPLDAMVWALQ----KFSGLP 137 (320)
Q Consensus 66 -~-~~l~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i--~ivvtNPvDv~~~~~~----~~sg~~ 137 (320)
. +.|+|||||||.||+||||||||+|||..||-|+++++..++++||+|. ++|+|||||++..++. +.--|+
T Consensus 81 ~l~~~L~~advVvIPAGVPRKPGMtRDDLF~~NAgIv~~L~~a~A~~cP~A~vfi~vI~NPVNStVPI~a~~LKk~G~Y~ 160 (379)
T TIGR01772 81 ALENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMVFILVISNPVNSTVPIAAEVLKKKGVYD 160 (379)
T ss_pred CHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 14888627958998178788755675567550417899899999740876058999986685651799999999618868
Q ss_pred HHH-----HHHHCCCHHHHHHHHHHHHHCCCC-----------CCCCEEEEECCC-CCEEEEECCCCCCCCCHHHHHHHC
Q ss_conf 656-----110005256899999999971987-----------335505675078-852465102354477015543001
Q gi|254781048|r 138 SHM-----VVGMAGILDSARFRYFLAQEFGVS-----------VESVTALVLGSH-GDSMVPMLRYATVSGIPVSDLVKL 200 (320)
Q Consensus 138 ~~r-----ViG~Gt~LDs~R~~~~ia~~l~v~-----------~~~V~~~ViGeH-Gds~vp~~S~~~v~g~p~~~~~~~ 200 (320)
|+| +||. |+||..|+++||+|..+.+ |..++.+|||+| |.|.+|++|+...-
T Consensus 161 pn~GierrlfGV-T~LD~vRA~tF~~E~~~~~nPkiG~~~~~~p~~~~VpVIGGHSG~TIiPL~sQ~~~~---------- 229 (379)
T TIGR01772 161 PNKGIERRLFGV-TTLDIVRANTFVAEIKNKDNPKIGLEQDKTPMKVNVPVIGGHSGETIIPLISQCNGL---------- 229 (379)
T ss_pred CCCCCCEEECCC-CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEECCCCC----------
T ss_conf 887530243141-124689999999997278888667776766530330057067785100204347889----------
Q ss_pred CCCCHHHHHHHHHHHHCCHHHHHHH-HCCCCCCCCCHHHHHHHHHHH---HCC----CCEEEEEEEEEC--CCC------
Q ss_conf 5878767999984551015888875-157654322032323445545---288----974999999973--644------
Q gi|254781048|r 201 GWTTQEKIDQIVKRTREGGAEIVGL-LRSGSAYYAPASSAIAIAESY---LKN----KKNLLPCAAHLS--GQY------ 264 (320)
Q Consensus 201 ~~~~~~~~~~l~~~v~~~g~~ii~~-~~kg~t~~~~a~a~~~ii~aI---l~~----~~~v~~~s~~~~--g~y------ 264 (320)
...+++++++|++|++.+|.||++. .|+||++++||+|.+|++.++ |++ +..++.|+ |++ ..-
T Consensus 230 ~~~~~~~~~~Li~RiQ~aGtEVVkAK~G~GSATLSMA~AGakF~~~~v~~l~G~kP~~e~~~e~~-YV~GL~d~~~fPia 308 (379)
T TIGR01772 230 VLLTEDQLEALIHRIQFAGTEVVKAKAGAGSATLSMAFAGAKFALSLVSGLKGEKPEEEGVVECA-YVDGLSDGKKFPIA 308 (379)
T ss_pred CCCCHHHHHHHHCEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE-EECCCCCCCCCCCC
T ss_conf 88887889865100530483688701778962478999999999999998558987416637999-50776663337879
Q ss_pred ---------CCCCEEEEEEEEECCCCCE--EEECC-CCCHHH-HHHHHHHHHHHHH----HHHHHHHH
Q ss_conf ---------7563478876999787228--88479-998899-9999999999999----99999976
Q gi|254781048|r 265 ---------GVEGFYVGVPVVIGHKGVE--KIVEL-NLSFDE-KDAFQKSVKATVD----LCNSCTKL 315 (320)
Q Consensus 265 ---------g~~~v~~s~P~vig~~Gi~--~i~~l-~Ls~~E-~~~l~~sa~~i~~----~~~~~~~l 315 (320)
..+--|||.|++||++||+ +...+ +||++| +++|+.+.+.||+ .|+...+.
T Consensus 309 PG~~Q~L~~~~~~~fFa~Pl~Lg~~Gv~~v~~~~ig~Ls~~Ere~~L~~~~~~LKksiaknI~KG~~F 376 (379)
T TIGR01772 309 PGKDQLLVLVTEAEFFAIPLVLGKKGVEYVKRLGIGKLSSEEREKMLNGALPELKKSIAKNIEKGEEF 376 (379)
T ss_pred CCHHCCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 85101351233404664223772886688662679997978999999999999998862260320765
No 25
>TIGR01759 MalateDH-SF1 malate dehydrogenase; InterPro: IPR010945 Malate dehydrogenases catalyse the interconversion of malate and oxaloacetate using dinucleotide cofactors . The enzymes in this entry are found in archaea, bacteria and eukaryotes and fall into two distinct groups. The first group are cytoplamsic, NAD-dependent enzymes which participate in the citric acid cycle (1.1.1.37 from EC). The second group are found in plant chloroplasts, use NADP as cofactor, and participate in the C4 cycle (1.1.1.82 from EC). Structural studies indicate that these enzymes are homodimers with very sinmilar overall topology, though the chloroplast enzymes also have N- and C-terminal extensions, and all contain the classical Rossman fold for NAD(P)H binding , , , . Substrate specificity is determined by a mobile loop at the active site which uses charge balancing to discriminate between the correct substrates (malate and oxaloacetate) and other potential oxo/hydroxyacid substrates the enzyme may encounter within the cell .; GO: 0016615 malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=100.00 E-value=0 Score=407.62 Aligned_cols=304 Identities=26% Similarity=0.386 Sum_probs=273.8
Q ss_pred CCCCEEEEECC-CCHHHHHHHHHHHCCC-C-----EEEEEECCC--CCHHHHHHHHHHHCCCCCCCCEEEECCC-HHHHC
Q ss_conf 99872899889-8136899999995799-8-----699996578--8128988307620544688756852697-48837
Q gi|254781048|r 1 MKSNKIALIGS-GMIGGTLAHLAVLKKL-G-----DVVLLDIVD--GMPRGKALDIAESSPVEGFGAQLCGTSD-YSDIA 70 (320)
Q Consensus 1 mk~~KV~IIGa-G~VG~~~a~~~~~~~l-~-----ei~L~D~~~--~~~~g~~~Dl~~~~~~~~~~~~v~~~~d-~~~l~ 70 (320)
+++-||.|.|| |++|+++.|.++.+.+ . +|.|+||-. ..++|++|+|+||+ +|+...+..++| .++++
T Consensus 1 ~~p~rV~VTGAAGQI~Y~Ll~~iA~G~~fG~Dqpv~L~LLdIP~A~~~LeGV~MEL~DCA--FPlL~~v~~T~~p~eAF~ 78 (329)
T TIGR01759 1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPQAMKALEGVVMELEDCA--FPLLAGVVATTDPEEAFK 78 (329)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCC--CCCCCCCEECCCHHHHHC
T ss_conf 995379973744678999988985561048898468886077233113344355353064--522351122168687518
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCHHHHHHHHHHC--CCCHHHHHHHCCC
Q ss_conf 89789995566667655746789988999999997654126-67408871484207899998844--9986561100052
Q gi|254781048|r 71 EADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYA-PNSFVICITNPLDAMVWALQKFS--GLPSHMVVGMAGI 147 (320)
Q Consensus 71 ~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~~i~ivvtNPvDv~~~~~~~~s--g~~~~rViG~Gt~ 147 (320)
|.|+.++-++.||||||.|.|||+.|.+||++.++.|.+++ |+..++||.||+|++|.++++.+ .+|+ +.|...|.
T Consensus 79 dvD~AlLvGa~PRK~GMER~DLL~~Ng~IF~~QG~aLn~~Ak~~vKVLVVGNPaNTNaLIa~~~AP~~ip~-~Nf~AmtR 157 (329)
T TIGR01759 79 DVDVALLVGAFPRKPGMERRDLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIASKNAPKKIPP-KNFSAMTR 157 (329)
T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCC-CCCCHHHH
T ss_conf 98757761366895884479998722254687999999861898569985298627999999706865651-11102002
Q ss_pred HHHHHHHHHHHHHCCCCCCCC-EEEEECCCCCEEEEECCCCCCC----CCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHH
Q ss_conf 568999999999719873355-0567507885246510235447----70155430015878767999984551015888
Q gi|254781048|r 148 LDSARFRYFLAQEFGVSVESV-TALVLGSHGDSMVPMLRYATVS----GIPVSDLVKLGWTTQEKIDQIVKRTREGGAEI 222 (320)
Q Consensus 148 LDs~R~~~~ia~~l~v~~~~V-~~~ViGeHGds~vp~~S~~~v~----g~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~i 222 (320)
||++|+.+.||.++|++.++| +..|||+|+.||||++.+++|. |+|+.|.++.....+ .+.++.|+++|++|
T Consensus 158 LDhNRA~~qlA~K~Gv~~~~V~nv~iWGNHS~tQvPD~~~A~v~~~~~~~pV~e~i~d~~Wl~---g~F~~~Vq~RG~Av 234 (329)
T TIGR01759 158 LDHNRAKSQLAAKLGVPVSDVKNVIIWGNHSNTQVPDVTHATVDKDGKGKPVKELIKDDDWLE---GEFIPTVQQRGAAV 234 (329)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCC---CCCHHHHHHHHHHH
T ss_conf 247899999998758960113237997027876564453116874899341523346532100---43201032258999
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHCCC--CEEEEEEEEE-CC-CCCC-CCEEEEEEEEECCCCCEEEEC-CCCCHHHHH
Q ss_conf 8751576543220323234455452889--7499999997-36-4475-634788769997872288847-999889999
Q gi|254781048|r 223 VGLLRSGSAYYAPASSAIAIAESYLKNK--KNLLPCAAHL-SG-QYGV-EGFYVGVPVVIGHKGVEKIVE-LNLSFDEKD 296 (320)
Q Consensus 223 i~~~~kg~t~~~~a~a~~~ii~aIl~~~--~~v~~~s~~~-~g-~yg~-~~v~~s~P~vig~~Gi~~i~~-l~Ls~~E~~ 296 (320)
|+.||+ |+-.|.|.|+++.+++++.++ ..++++++|. +| .||+ +|++||+||..-++|-++|++ |++|++-++
T Consensus 235 I~~RG~-SSAASAA~AA~dh~rdW~~GTpeG~~vSm~V~sp~GNpYGip~Gi~fSfPv~~~~~G~w~iV~Gl~~~df~r~ 313 (329)
T TIGR01759 235 IEARGA-SSAASAANAAIDHVRDWVLGTPEGDWVSMGVYSPDGNPYGIPEGIIFSFPVTSKGDGEWEIVEGLELDDFVRK 313 (329)
T ss_pred HHHHCC-CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCEEEEECCEEEEECCCCCCHHHHH
T ss_conf 998454-6136799999999997168989976267665378878787888827833068741732797368878989999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999999
Q gi|254781048|r 297 AFQKSVKATVDLCNS 311 (320)
Q Consensus 297 ~l~~sa~~i~~~~~~ 311 (320)
+|+.|+++|.++.+.
T Consensus 314 ~~~~t~~EL~~Eke~ 328 (329)
T TIGR01759 314 KLDATAKELLEEKEE 328 (329)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 986509999999731
No 26
>KOG1494 consensus
Probab=100.00 E-value=0 Score=381.90 Aligned_cols=297 Identities=29% Similarity=0.480 Sum_probs=257.7
Q ss_pred CCEEEEECC-CCHHHHHHHHHHHCC-CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEE---CCC-HHHHCCCCEEE
Q ss_conf 872899889-813689999999579-986999965788128988307620544688756852---697-48837897899
Q gi|254781048|r 3 SNKIALIGS-GMIGGTLAHLAVLKK-LGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCG---TSD-YSDIAEADVCI 76 (320)
Q Consensus 3 ~~KV~IIGa-G~VG~~~a~~~~~~~-l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~---~~d-~~~l~~aDivV 76 (320)
..||+|+|| |.+|+.++.++.++. +++|.|||+.. +.|++.||+|... ...+.+ .+. .+++++||+||
T Consensus 28 ~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~--~~GVaaDlSHI~T----~s~V~g~~g~~~L~~al~~advVv 101 (345)
T KOG1494 28 GLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIAN--TPGVAADLSHINT----NSSVVGFTGADGLENALKGADVVV 101 (345)
T ss_pred CCEEEEEECCCCCCCCHHHHHHCCCCCCEEEEEECCC--CCCCCCCCCCCCC----CCCEECCCCHHHHHHHHCCCCEEE
T ss_conf 6249997348766756899974285523013332036--9862022001678----871312678367898753897899
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHH----HHHHHCCCCHHHHHHHCCCHHHHH
Q ss_conf 9556666765574678998899999999765412667408871484207899----998844998656110005256899
Q gi|254781048|r 77 VTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVW----ALQKFSGLPSHMVVGMAGILDSAR 152 (320)
Q Consensus 77 itag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~----~~~~~sg~~~~rViG~Gt~LDs~R 152 (320)
|.||+||||||||+||+..|+.|+++++..++++||++.+.++|||||..+. ++.+..-|+++|+||. |+||..|
T Consensus 102 IPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGV-TtLDvVR 180 (345)
T KOG1494 102 IPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGV-TTLDVVR 180 (345)
T ss_pred ECCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEECE-EHHHHHH
T ss_conf 638998999985777664144799999999986596121676607633420589999997387886523030-0212354
Q ss_pred HHHHHHHHCCCCC-CCCEEEEECCC-CCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHH-HCCC
Q ss_conf 9999999719873-35505675078-8524651023544770155430015878767999984551015888875-1576
Q gi|254781048|r 153 FRYFLAQEFGVSV-ESVTALVLGSH-GDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGL-LRSG 229 (320)
Q Consensus 153 ~~~~ia~~l~v~~-~~V~~~ViGeH-Gds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~-~~kg 229 (320)
.++|+++.++++| .+++.+|+|+| |.|.+|++|+++.- ..++.++++.+++|++++|.|+++. .|+|
T Consensus 181 A~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~----------~~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaG 250 (345)
T KOG1494 181 ANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPP----------FRFTDDEIEALTHRIQNGGTEVVKAKAGAG 250 (345)
T ss_pred HHHHHHHHHCCCCHHCCCCCEECCCCCCEEEEECCCCCCC----------CCCCHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 8889998717990013776434376785685400147876----------558999999999988717736777036878
Q ss_pred CCCCCCHHHHHHHHHHHH---CCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEECC-CCCHHHHHHHHHHHHHH
Q ss_conf 543220323234455452---88974999999973644756347887699978722888479-99889999999999999
Q gi|254781048|r 230 SAYYAPASSAIAIAESYL---KNKKNLLPCAAHLSGQYGVEGFYVGVPVVIGHKGVEKIVEL-NLSFDEKDAFQKSVKAT 305 (320)
Q Consensus 230 ~t~~~~a~a~~~ii~aIl---~~~~~v~~~s~~~~g~yg~~~v~~s~P~vig~~Gi~~i~~l-~Ls~~E~~~l~~sa~~i 305 (320)
++++++|+|.++++++.+ +++..+..|+.+....+++ .||+.|++||++|++++..+ +||++|+++|+.+..++
T Consensus 251 SATLSMAyAga~fa~s~lrgl~G~~~v~ecafV~s~~~~~--~fFaspv~Lg~~Gv~~v~~l~~lsd~E~~~l~~~~~eL 328 (345)
T KOG1494 251 SATLSMAYAGAKFADSLLRGLNGDEDVVECAFVASPVTEL--PFFATPVTLGKKGVEEVLGLGKLSDYEEKALEAAKPEL 328 (345)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC--CCEECEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 4135678788999999999727998727876786256676--31012178657862564377765989999999989999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999976552
Q gi|254781048|r 306 VDLCNSCTKLVPS 318 (320)
Q Consensus 306 ~~~~~~~~~l~~~ 318 (320)
++.++...+...+
T Consensus 329 k~sI~KGv~F~~~ 341 (345)
T KOG1494 329 KKSIEKGVTFVKS 341 (345)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9878762798764
No 27
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent; InterPro: IPR011274 This entry represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography ; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=100.00 E-value=0 Score=360.98 Aligned_cols=301 Identities=24% Similarity=0.391 Sum_probs=265.7
Q ss_pred EEEEECC-CCHHHHHHHHHHHCCC-C-E----EEEEECCC--CCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCE
Q ss_conf 2899889-8136899999995799-8-6----99996578--81289883076205446887568526974-88378978
Q gi|254781048|r 5 KIALIGS-GMIGGTLAHLAVLKKL-G-D----VVLLDIVD--GMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADV 74 (320)
Q Consensus 5 KV~IIGa-G~VG~~~a~~~~~~~l-~-e----i~L~D~~~--~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDi 74 (320)
||.|-|| |+||++|.+.++.+.+ . | |.|+||.+ .-++|..|+|.||+ +|....+..+.++ ++++|.|+
T Consensus 1 rVlvtGAAGQiaY~L~~miA~G~~lG~dQ~~~LhLLDIp~a~~~L~Gv~mEL~DcA--fplL~~vV~T~~~~~AF~~v~v 78 (325)
T TIGR01758 1 RVLVTGAAGQIAYALLPMIARGEMLGKDQPIILHLLDIPPAVKVLEGVVMELVDCA--FPLLKGVVPTTDPAVAFTDVDV 78 (325)
T ss_pred CEEEEECHHHHHHHHHHHHHCCEEECCCCCEEECCCCHHHHHHHHHHHHHHHHHHH--HHHHCCCCCCCCCHHCCCCCCE
T ss_conf 95885043789998866774674208986001002481688875101367665201--2332223055771000178757
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCHHHHHHHHHHCC--CCHHHHHHHCCCHHHH
Q ss_conf 9995566667655746789988999999997654126-674088714842078999988449--9865611000525689
Q gi|254781048|r 75 CIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYA-PNSFVICITNPLDAMVWALQKFSG--LPSHMVVGMAGILDSA 151 (320)
Q Consensus 75 vVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~~i~ivvtNPvDv~~~~~~~~sg--~~~~rViG~Gt~LDs~ 151 (320)
.++..+.|||+||.|.|||+.|++||++.++.+.+|+ +++.|+||.||+|+++.++.+++. .| ++.|...|-||++
T Consensus 79 A~lvGa~PrK~GmeRkDlLs~Nv~IF~~qG~aL~k~A~k~vkVlVVGNPaNTNALvl~~~ApSkIp-~~N~sALTRLDhN 157 (325)
T TIGR01758 79 ALLVGAFPRKEGMERKDLLSKNVKIFKEQGEALDKYAKKDVKVLVVGNPANTNALVLSEYAPSKIP-KKNFSALTRLDHN 157 (325)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCC-CCCCCCCCHHHHH
T ss_conf 997267789888622668774479999899999986389836998408702589998650688887-1223320110144
Q ss_pred HHHHHHHHHCCCCCCCC-EEEEECCCCCEEEEECCCCCCC-C---CHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 99999999719873355-0567507885246510235447-7---01554300158787679999845510158888751
Q gi|254781048|r 152 RFRYFLAQEFGVSVESV-TALVLGSHGDSMVPMLRYATVS-G---IPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLL 226 (320)
Q Consensus 152 R~~~~ia~~l~v~~~~V-~~~ViGeHGds~vp~~S~~~v~-g---~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~ 226 (320)
|.-..+|++++++.++| +..+||+|+.+|||+.++|+|. + .|..|.++++...++ +.++-|+++|++||++|
T Consensus 158 RA~~qvA~r~~vPv~~VKNviIWGNHS~tQyPD~~~A~V~~~g~~~pv~e~i~dd~yl~g---~F~~TVQ~RGaavI~~R 234 (325)
T TIGR01758 158 RALAQVAERLGVPVSDVKNVIIWGNHSSTQYPDVNHATVTKDGKEKPVRELIKDDEYLDG---EFIETVQQRGAAVIKAR 234 (325)
T ss_pred HHHHHHHHHHCCCCEECCCEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHCCCCCCCCC---CEEECHHHHHHHHHHHH
T ss_conf 679999998288820112468824688866477763278469863123310036760245---03100003359999873
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCC--CCEEEEEEEEECCC-CCC-CCEEEEEEEEECCCCCEEEEC-CCCCHHHHHHHHHH
Q ss_conf 57654322032323445545288--97499999997364-475-634788769997872288847-99988999999999
Q gi|254781048|r 227 RSGSAYYAPASSAIAIAESYLKN--KKNLLPCAAHLSGQ-YGV-EGFYVGVPVVIGHKGVEKIVE-LNLSFDEKDAFQKS 301 (320)
Q Consensus 227 ~kg~t~~~~a~a~~~ii~aIl~~--~~~v~~~s~~~~g~-yg~-~~v~~s~P~vig~~Gi~~i~~-l~Ls~~E~~~l~~s 301 (320)
|=|.-.+.|.|+++-++-+..+ +..+.++++|.+|. ||. .|++||+||.+ ++|-+++++ +.++|+-+++|.-+
T Consensus 235 -k~SsAlSAA~AavD~~~DWv~GT~~G~fVSM~VYSdG~~Y~~P~dl~FSFPVt~-~~g~w~~V~gl~~~~~~~~~l~~t 312 (325)
T TIGR01758 235 -KLSSALSAAKAAVDQMRDWVLGTPEGTFVSMGVYSDGSPYGVPKDLIFSFPVTI-KNGEWKIVEGLSLDDASRKKLALT 312 (325)
T ss_pred -HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEECCEEE-ECCEEEEECCCCCCHHHHHHHHCC
T ss_conf -002688988853175302502279974588678637887878988577235687-678378853864588999887200
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254781048|r 302 VKATVDLCNSCT 313 (320)
Q Consensus 302 a~~i~~~~~~~~ 313 (320)
+++++|+.+.+.
T Consensus 313 a~EL~eEk~~Al 324 (325)
T TIGR01758 313 AKELKEEKDEAL 324 (325)
T ss_pred HHHHHHHHHHHC
T ss_conf 776688887624
No 28
>cd04510 consensus
Probab=100.00 E-value=0 Score=337.75 Aligned_cols=301 Identities=16% Similarity=0.184 Sum_probs=258.9
Q ss_pred CCEEEEECC-CCHHHHHHHHHHHCCC-C-----EEEEEECCC--CCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCC
Q ss_conf 872899889-8136899999995799-8-----699996578--81289883076205446887568526974-883789
Q gi|254781048|r 3 SNKIALIGS-GMIGGTLAHLAVLKKL-G-----DVVLLDIVD--GMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEA 72 (320)
Q Consensus 3 ~~KV~IIGa-G~VG~~~a~~~~~~~l-~-----ei~L~D~~~--~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~a 72 (320)
+-||+|.|| |++|+++.+.++.+.+ . .|.|+|+.+ +.++|.+|+|+||+ +|....+..++|+ ++++|+
T Consensus 1 P~~V~VTGAAGqI~Y~Ll~~Ia~G~vfG~dq~V~L~Lldi~~~~~~L~Gv~MELeDcA--fPlL~~v~~t~d~~~AF~da 78 (334)
T cd04510 1 PLQVWITSASAPVCYHLIPHLASGDVFGMLTEISIHLLDTSESEEMLKGLVMEVFDLA--FPLLREVSVHTDVMLAFQQA 78 (334)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHCEEEEHHHCC--CHHHCCEEEECCHHHHHCCC
T ss_conf 9099995773799999999984787669997599996686667887533055114046--54338658857878973668
Q ss_pred CEEEEECCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEECC-CCHHHHHHHHHHC-CCCHHHHHHHCCCH
Q ss_conf 789995566-667655746789988999999997654126-6740887148-4207899998844-99865611000525
Q gi|254781048|r 73 DVCIVTAGI-PRKPSMSRDDLLADNLKAIEKVGAGIRKYA-PNSFVICITN-PLDAMVWALQKFS-GLPSHMVVGMAGIL 148 (320)
Q Consensus 73 DivVitag~-~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~~i~ivvtN-PvDv~~~~~~~~s-g~~~~rViG~Gt~L 148 (320)
|++++-.|. ||.++|.|.||++.|.+||+.+++.+.+++ |+..++|+.| |+|++|.++.+.. .+|++++..+ |.|
T Consensus 79 d~ailvg~~~~r~~~~~r~dll~~n~~IF~~qG~al~~~A~~~vKVlVvGN~PaNTNalI~~~~Ap~Ip~~nf~Am-trL 157 (334)
T cd04510 79 HVIIVLDDFQLKGEENDLEGDKRTVVEHFHRYGQLIEQNAQKDVRVLVAGRGFLNLKASLLIENAPSIDRQNIIAV-ATQ 157 (334)
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHEEEH-HHH
T ss_conf 8899970446787741568999975799999999998536688679997898652779999975777976765610-576
Q ss_pred HHHHHHHHHHHHCCCCCCCC-EEEEECCCCCEEEEECCCCCCCC------------CHHHHHHHCCCCCHHHH-HHHHHH
Q ss_conf 68999999999719873355-05675078852465102354477------------01554300158787679-999845
Q gi|254781048|r 149 DSARFRYFLAQEFGVSVESV-TALVLGSHGDSMVPMLRYATVSG------------IPVSDLVKLGWTTQEKI-DQIVKR 214 (320)
Q Consensus 149 Ds~R~~~~ia~~l~v~~~~V-~~~ViGeHGds~vp~~S~~~v~g------------~p~~~~~~~~~~~~~~~-~~l~~~ 214 (320)
|.+|.+..||+++|+++++| +..|||+|+.||||+.|+++|.| +|+.+.+.. ...+ +++++.
T Consensus 158 D~NRA~a~lA~Kl~v~~~~V~nviIWGNhS~tq~pD~~~A~v~~~dgai~gp~~~~~~v~~~i~D----~~Wl~~efi~~ 233 (334)
T cd04510 158 LEYEAKAQLARKLNVNTAGVKDVIVWGNIGGSTYIDLSRARVYRYDGAIWGPDSFSRHVMEMVHD----NKWLDTEFRSL 233 (334)
T ss_pred HHHHHHHHHHHHHCCCHHHHEEEEEEECCCCCCCCCHHHCEEECCCCCCCCCCCCCCCHHHHHHH----HHHHHHHHHHH
T ss_conf 78899999999869997781233798468888677400327835465434775456627776347----78887531388
Q ss_pred HHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC--CEEEEEEEEECCCCCC-CCEEEEEEEEECCCCCEEEEC-CCC
Q ss_conf 510158888751576543220323234455452889--7499999997364475-634788769997872288847-999
Q gi|254781048|r 215 TREGGAEIVGLLRSGSAYYAPASSAIAIAESYLKNK--KNLLPCAAHLSGQYGV-EGFYVGVPVVIGHKGVEKIVE-LNL 290 (320)
Q Consensus 215 v~~~g~~ii~~~~kg~t~~~~a~a~~~ii~aIl~~~--~~v~~~s~~~~g~yg~-~~v~~s~P~vig~~Gi~~i~~-l~L 290 (320)
++++|.+||+.+|+ ++..+.|.|+++.++.+.+++ ..|++++++.+|+||+ +|++||+||+. ++|-.++++ +++
T Consensus 234 Vq~Rga~ii~~Rg~-sSAaSaA~A~~dh~~dw~~gt~~ge~vSmgV~SdG~YGIp~GivfSfPv~~-~~G~~~IV~~l~~ 311 (334)
T cd04510 234 LQKHRATILTSLNH-AAAISTAHAIASILKYWYNGSPPGEIFSLGVLSEGQFGIPEGIVFSMPVKF-QKGSWEVVQDLIV 311 (334)
T ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEE-ECCCEEEECCCCC
T ss_conf 87406889977474-506659999999999972799889689998742887699998189756998-1981899789511
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8899999999999999999999
Q gi|254781048|r 291 SFDEKDAFQKSVKATVDLCNSC 312 (320)
Q Consensus 291 s~~E~~~l~~sa~~i~~~~~~~ 312 (320)
+++-+++|+.+.+++.++.+.+
T Consensus 312 ~~~~~~~i~~t~~EL~~Er~~A 333 (334)
T cd04510 312 TEELRVNLDAITDELIQEKDVA 333 (334)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999998999999999843
No 29
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.4e-45 Score=315.59 Aligned_cols=299 Identities=17% Similarity=0.210 Sum_probs=253.3
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCC---C---EEEEEECC--CCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCC
Q ss_conf 9872899889-8136899999995799---8---69999657--881289883076205446887568526974-88378
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLKKL---G---DVVLLDIV--DGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAE 71 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~~l---~---ei~L~D~~--~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~ 71 (320)
++-+|.|.|| |++-+++.+.++.+.+ . .|.|+|+. .++++|.+|+|+||+ +|....+..++|. ++++|
T Consensus 122 ~Pl~V~VTgAag~iaYsLi~~lasGevFG~d~~i~L~LlDip~~~e~L~Gv~MELeDcA--fPlL~~v~~t~d~~~AF~d 199 (452)
T cd05295 122 NPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLA--FPLLRGISVTTDLDVAFKD 199 (452)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHCHHHHHHHHC--CCCCCCEEEECCHHHHHCC
T ss_conf 87469994684476899999973767348987179995477407788636335676534--4001710676799998557
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEEC-CCCHHHHHHHHHHCC-CCHHHHHHHCCCH
Q ss_conf 9789995566667655746789988999999997654126-674088714-842078999988449-9865611000525
Q gi|254781048|r 72 ADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYA-PNSFVICIT-NPLDAMVWALQKFSG-LPSHMVVGMAGIL 148 (320)
Q Consensus 72 aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~~i~ivvt-NPvDv~~~~~~~~sg-~~~~rViG~Gt~L 148 (320)
||++++..+.||++||+|.|+|..|++||+.+++.+.+++ ++..++||. ||+|.+|.++.+..- +|++++..+ |.|
T Consensus 200 ad~ailvga~pr~~gmer~dlL~~n~~IF~~qG~aln~~Ak~~vKVLVvG~nPaNtNalI~~~~Ap~Ip~~Nf~Am-trL 278 (452)
T cd05295 200 AHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSILIKYAPSIPRKNIIAV-ARL 278 (452)
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCHHHEEEE-HHH
T ss_conf 9889995884788887188999987799999999998544568669996788651688999975899975763510-276
Q ss_pred HHHHHHHHHHHHCCCCCCCC-EEEEECCCCCEEEEECCCCCCCC------------CHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 68999999999719873355-05675078852465102354477------------015543001587876799998455
Q gi|254781048|r 149 DSARFRYFLAQEFGVSVESV-TALVLGSHGDSMVPMLRYATVSG------------IPVSDLVKLGWTTQEKIDQIVKRT 215 (320)
Q Consensus 149 Ds~R~~~~ia~~l~v~~~~V-~~~ViGeHGds~vp~~S~~~v~g------------~p~~~~~~~~~~~~~~~~~l~~~v 215 (320)
|.+|++..||+++|+++++| +..|||+|+.||||+.++++|.| .|+.+.+...... .+++++.+
T Consensus 279 D~NRA~aqlA~Klgv~~~~VknviIWGNHS~TqyPD~~~A~V~~~~~ai~gp~~~~~~v~~~I~D~~Wl---~~eFi~~V 355 (452)
T cd05295 279 QENRAKALLARKLNVNSAGIKDVIVWGNIGGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWI---NGEFVATL 355 (452)
T ss_pred HHHHHHHHHHHHHCCCHHHCEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHCCHHHH---HHHHHHHH
T ss_conf 666899999988399877732548985687882786653389364643346765566488884667778---74538999
Q ss_pred HCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC--CEEEEEEEEECCCCCC-CCEEEEEEEEECCCCCEEEEC-CCCC
Q ss_conf 10158888751576543220323234455452889--7499999997364475-634788769997872288847-9998
Q gi|254781048|r 216 REGGAEIVGLLRSGSAYYAPASSAIAIAESYLKNK--KNLLPCAAHLSGQYGV-EGFYVGVPVVIGHKGVEKIVE-LNLS 291 (320)
Q Consensus 216 ~~~g~~ii~~~~kg~t~~~~a~a~~~ii~aIl~~~--~~v~~~s~~~~g~yg~-~~v~~s~P~vig~~Gi~~i~~-l~Ls 291 (320)
+++|..+ +.++..+.|.|+++.++.+.+++ ..+++++++.+|+||+ +|++||+||+. ++|-.++++ |++|
T Consensus 356 q~Rg~a~-----~~ssa~SaA~A~~d~~rdW~~gT~~Ge~vSmgV~SdG~YGIpeGiifSfPv~~-~nG~w~IV~gL~i~ 429 (452)
T cd05295 356 KSLSSSL-----NHEAAISPAHAIATTLSYWYHGSPPGEIFSLGVISEGWYGIPEGIVFSMPVKF-QNGSWEVVTDLELS 429 (452)
T ss_pred HHHHHHH-----HHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEE-ECCCEEEECCCCCC
T ss_conf 8615665-----43114419999999999986799989289998721898789998189853899-58918996897038
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999999999999999999
Q gi|254781048|r 292 FDEKDAFQKSVKATVDLCNSC 312 (320)
Q Consensus 292 ~~E~~~l~~sa~~i~~~~~~~ 312 (320)
++-+++++.+++++.++.+.+
T Consensus 430 ef~r~ki~~t~~EL~~Er~~A 450 (452)
T cd05295 430 EILREVLKRITSDLIQEKLVA 450 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999989875
No 30
>pfam02866 Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain. L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes.
Probab=100.00 E-value=1.4e-45 Score=317.15 Aligned_cols=170 Identities=34% Similarity=0.521 Sum_probs=159.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCC-CCHHHHHHHHHHHHCCHHHHHH
Q ss_conf 525689999999997198733550567507885246510235447701554300158-7876799998455101588887
Q gi|254781048|r 146 GILDSARFRYFLAQEFGVSVESVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKLGW-TTQEKIDQIVKRTREGGAEIVG 224 (320)
Q Consensus 146 t~LDs~R~~~~ia~~l~v~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~-~~~~~~~~l~~~v~~~g~~ii~ 224 (320)
|.|||+|||++||++++++|++|++|||||||++|||+||+++|+|.|+.++.+... .++.+++++.++++++|++|++
T Consensus 1 T~LDs~R~r~~la~~l~v~~~~v~~~ViGeHG~s~vp~~S~~~i~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~ 80 (173)
T pfam02866 1 TTLDTARARTFLAEKFGVDPRSVNVYVIGEHSGTQFPDWSHAKVTIIPLLSQVKENLKDTDWELEELIERVQNAGYEVIE 80 (173)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHEEEEEEEECCCCCCCCCCCCEECCEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 96478999999999969597785899997169974135423669255678862021688899999999999974688864
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCC-CEEEEEEEEECCCCCEEEEC-CCCCHHHHHHHHHHH
Q ss_conf 5157654322032323445545288974999999973644756-34788769997872288847-999889999999999
Q gi|254781048|r 225 LLRSGSAYYAPASSAIAIAESYLKNKKNLLPCAAHLSGQYGVE-GFYVGVPVVIGHKGVEKIVE-LNLSFDEKDAFQKSV 302 (320)
Q Consensus 225 ~~~kg~t~~~~a~a~~~ii~aIl~~~~~v~~~s~~~~g~yg~~-~v~~s~P~vig~~Gi~~i~~-l~Ls~~E~~~l~~sa 302 (320)
. ++|+|+||+|.++++++++|++|++.++|||++++|+||+. ++|||+||+||++|++++++ ++|+++|+++|++|+
T Consensus 81 ~-k~gst~~siA~a~~~~~~ai~~~~~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~iv~~l~L~~~E~~~l~~S~ 159 (173)
T pfam02866 81 A-KAGSTTYSMAYAAARIAKAILRGTGGVLSVGVYLDGYYGSPDDIYFSVPVVLGKDGVEKVVEILPLNDFEREKLEKSA 159 (173)
T ss_pred H-HCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 2-268775128899999999996167862662057516538889779987899869925997589999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999765
Q gi|254781048|r 303 KATVDLCNSCTKLV 316 (320)
Q Consensus 303 ~~i~~~~~~~~~l~ 316 (320)
+.+++.++.+.+.+
T Consensus 160 ~~l~~~ie~~~~~~ 173 (173)
T pfam02866 160 AELKKEIEKGFAFV 173 (173)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999998439
No 31
>KOG1496 consensus
Probab=100.00 E-value=2.1e-42 Score=295.42 Aligned_cols=308 Identities=25% Similarity=0.373 Sum_probs=266.8
Q ss_pred CCEEEEECC-CCHHHHHHHHHHHCCC-C-----EEEEEECCC--CCHHHHHHHHHHHCCCCCCCCEEEECCC-HHHHCCC
Q ss_conf 872899889-8136899999995799-8-----699996578--8128988307620544688756852697-4883789
Q gi|254781048|r 3 SNKIALIGS-GMIGGTLAHLAVLKKL-G-----DVVLLDIVD--GMPRGKALDIAESSPVEGFGAQLCGTSD-YSDIAEA 72 (320)
Q Consensus 3 ~~KV~IIGa-G~VG~~~a~~~~~~~l-~-----ei~L~D~~~--~~~~g~~~Dl~~~~~~~~~~~~v~~~~d-~~~l~~a 72 (320)
+-+|.|.|| |++|.++.+.++.+.+ . .|.|+|+.+ +.++|++|+|+||+ +|....+..++| -++++|.
T Consensus 4 pirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a--~PlL~~Vvattd~~~afkdv 81 (332)
T KOG1496 4 PIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCA--LPLLKGVVATTDEVEAFKDV 81 (332)
T ss_pred CEEEEEECCCCHHHHHHHHHHCCCEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHH--HHHHHHHHCCCCHHHHHCCC
T ss_conf 5478752455202678789872741656998648996078157788887887777523--16777654267766641567
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHH
Q ss_conf 789995566667655746789988999999997654126-6740887148420789999884499865611000525689
Q gi|254781048|r 73 DVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYA-PNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSA 151 (320)
Q Consensus 73 DivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~ 151 (320)
|+.++-.+.||++||.|.||+..|.+||+..+..+.+|+ |+..++||.||+|.++.++.++.---|.+.|.-.|.||.+
T Consensus 82 ~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~k~ApsIP~kNfs~lTRLDhN 161 (332)
T KOG1496 82 DVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILKKFAPSIPEKNFSALTRLDHN 161 (332)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHCCEEEHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCCCCCHHCCHHHHHHCHH
T ss_conf 67989636666566116668761112312326889975177844999547666304667640778842100023220101
Q ss_pred HHHHHHHHHCCCCCCCC-EEEEECCCCCEEEEECCCCCCCC----CHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 99999999719873355-05675078852465102354477----01554300158787679999845510158888751
Q gi|254781048|r 152 RFRYFLAQEFGVSVESV-TALVLGSHGDSMVPMLRYATVSG----IPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLL 226 (320)
Q Consensus 152 R~~~~ia~~l~v~~~~V-~~~ViGeHGds~vp~~S~~~v~g----~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~ 226 (320)
|....||.++++..++| +..+||+|+.+|+|..-|++|++ .|..+.+..+.+.+ .+.++.++++|.-+|+.
T Consensus 162 RA~~QlA~klgv~~~~VkNviIWGNHSsTQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~---g~Fi~tVQkRGaavi~a- 237 (332)
T KOG1496 162 RALAQLALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVNTNGGEKPVKEAVKDDAWLQ---GEFIETVQKRGAAVIKA- 237 (332)
T ss_pred HHHHHHHHHHCCCHHHCCEEEEECCCCCCCCCCCCCEEEECCCCCCCHHHHHCCCHHHC---CCHHHHHHHCCHHHHHH-
T ss_conf 68787887618852003215885365665477743225504677543788744411330---31356677512266655-
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCC--CCEEEEEEEEECCCCCC-CCEEEEEEEEECCCCCEEEEC-CCCCHHHHHHHHHHH
Q ss_conf 57654322032323445545288--97499999997364475-634788769997872288847-999889999999999
Q gi|254781048|r 227 RSGSAYYAPASSAIAIAESYLKN--KKNLLPCAAHLSGQYGV-EGFYVGVPVVIGHKGVEKIVE-LNLSFDEKDAFQKSV 302 (320)
Q Consensus 227 ~kg~t~~~~a~a~~~ii~aIl~~--~~~v~~~s~~~~g~yg~-~~v~~s~P~vig~~Gi~~i~~-l~Ls~~E~~~l~~sa 302 (320)
+|-++..+.|.++++.++.+..+ +..+++++++.+|.||+ +|..||+||.+ ++|-++++. +++++..++++..++
T Consensus 238 rk~SSA~SaA~aacDhi~dw~~gTpeG~fvSmgV~sDGsYgip~gli~SfPv~~-k~g~wkiVqgl~iddf~r~km~~t~ 316 (332)
T KOG1496 238 RKLSSAMSAAKAACDHIRDWWFGTPEGTFVSMGVYSDGSYGIPDGLIFSFPVTI-KNGDWKIVQGLPIDDFSREKMDLTA 316 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEE-CCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 411035667776766566413478986279976413887799988489730576-0884589737522077787665569
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999997655
Q gi|254781048|r 303 KATVDLCNSCTKLVP 317 (320)
Q Consensus 303 ~~i~~~~~~~~~l~~ 317 (320)
++++++.+.+.+.+.
T Consensus 317 ~EL~eEkd~a~~~l~ 331 (332)
T KOG1496 317 KELKEEKDLAYSCLS 331 (332)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999887877887506
No 32
>pfam00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain. L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Probab=100.00 E-value=1.4e-41 Score=290.01 Aligned_cols=139 Identities=37% Similarity=0.656 Sum_probs=132.1
Q ss_pred EEEEECCC-CHHHHHHHHHHHCCCC-EEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCC
Q ss_conf 28998898-1368999999957998-699996578812898830762054468875685269748837897899955666
Q gi|254781048|r 5 KIALIGSG-MIGGTLAHLAVLKKLG-DVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIP 82 (320)
Q Consensus 5 KV~IIGaG-~VG~~~a~~~~~~~l~-ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~ 82 (320)
||+||||| +||+++||++++++++ ||+|+|+++++++|+++||+|++++.+.. .+..+++|++++|||+||+|||.|
T Consensus 2 KV~IIGagg~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~-~~~~~~~~~~~~daDiVVitaG~~ 80 (142)
T pfam00056 2 KVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVP-GIVGGDDYEALKDADVVVITAGVP 80 (142)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCC-EEECCCCHHHHCCCCEEEEECCCC
T ss_conf 8999898778999999999747966347885057764117999986144347887-697488388837899999815777
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 67655746789988999999997654126674088714842078999988449986561100
Q gi|254781048|r 83 RKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGM 144 (320)
Q Consensus 83 ~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~ 144 (320)
|+|||+|+|||+.|++|++++++++++++|+++++++|||||+|||++||.||||++||||+
T Consensus 81 ~k~g~~R~dll~~Na~I~~~i~~~i~~~~p~~ivivvtNPvDvmt~~~~~~sg~p~~rViGs 142 (142)
T pfam00056 81 RKPGMTRLDLLNRNAGIFKDIVPAIAKSAPDAIVLVVSNPVDILTYIAWKVSGLPPERVIGS 142 (142)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 89998778999974699999999999769981999945946889999999978494311086
No 33
>TIGR01756 LDH_protist lactate dehydrogenase; InterPro: IPR011272 This entry represents a family of protist (Trichomonad) lactate dehydrogenases which have apparently evolved from a recent protist malate dehydrogenase ancestor . Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (Trichomonas vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemented the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accommodate the less bulky lactate molecule ..
Probab=100.00 E-value=2.6e-37 Score=262.26 Aligned_cols=290 Identities=22% Similarity=0.328 Sum_probs=237.3
Q ss_pred HHHHHHCCC-CE----EEEEECCC--CCHHHHHHHHHHHCCCCCCCCEEEECCCHH-HHCCCCEEEEECCCCCCCCCCHH
Q ss_conf 999995799-86----99996578--812898830762054468875685269748-83789789995566667655746
Q gi|254781048|r 19 AHLAVLKKL-GD----VVLLDIVD--GMPRGKALDIAESSPVEGFGAQLCGTSDYS-DIAEADVCIVTAGIPRKPSMSRD 90 (320)
Q Consensus 19 a~~~~~~~l-~e----i~L~D~~~--~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~-~l~~aDivVitag~~~~~g~~R~ 90 (320)
+|.++.+.| .+ |.|+|+.. .+++|.+|+|+||+ |... ...+.++.|| +++|-|+..+.|++|-|||+-|.
T Consensus 2 s~~IA~G~L~G~R~V~LHLle~~~A~~~l~aL~~EL~DCA-F~~L-~~~i~T~~~EeA~~dID~AFLVASvPLk~G~~R~ 79 (314)
T TIGR01756 2 SHWIASGDLYGERPVVLHLLEIPPALNRLEALALELEDCA-FPNL-AGVIATTKLEEAFKDIDCAFLVASVPLKPGEVRA 79 (314)
T ss_pred CEEEECCCEECCCCEEEEEECCHHHHHHHHHHHHHHHHCC-CHHH-CCCEECCCCCHHHCCCCEEEEEECCCCCCCCHHH
T ss_conf 3264064300587247764020689988666433444123-3123-1412016642011247624322225678860445
Q ss_pred HHHHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCHHHHHHHH-HHCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 789988999999997654126-67408871484207899998-8449986561100052568999999999719873355
Q gi|254781048|r 91 DLLADNLKAIEKVGAGIRKYA-PNSFVICITNPLDAMVWALQ-KFSGLPSHMVVGMAGILDSARFRYFLAQEFGVSVESV 168 (320)
Q Consensus 91 dll~~N~~i~~~i~~~i~~~~-p~~i~ivvtNPvDv~~~~~~-~~sg~~~~rViG~Gt~LDs~R~~~~ia~~l~v~~~~V 168 (320)
||+..|+.|||.+++.+.+|+ |.-.+++|.||+|.++.++. ..+++. .+.|.+-++||.+|.-+.||-+++|+..+|
T Consensus 80 dLl~~N~~IFKa~GE~Ls~yAK~TVk~LviGNP~N~Nc~vAML~A~~L~-~~NF~sl~~LD~NRa~~~iAS~l~V~v~~i 158 (314)
T TIGR01756 80 DLLKKNASIFKATGEALSEYAKPTVKVLVIGNPVNTNCLVAMLHAKKLS-AENFSSLLMLDYNRAVSRIASKLKVEVDEI 158 (314)
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHCCCCCC-HHHHHHHHHHHCCHHHHHHHHHCCCCHHHE
T ss_conf 5654064566677778775024414788841898525788654023557-535677766512314788886607825443
Q ss_pred -EEEEECCCCCEEEEECCCCCC---CCCH--HHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf -056750788524651023544---7701--5543001587876799998455101588887515765432203232344
Q gi|254781048|r 169 -TALVLGSHGDSMVPMLRYATV---SGIP--VSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLLRSGSAYYAPASSAIAI 242 (320)
Q Consensus 169 -~~~ViGeHGds~vp~~S~~~v---~g~p--~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~~kg~t~~~~a~a~~~i 242 (320)
+.-|||+|++||||..|++.+ +|+. ..+.+.... ..++..+.+-+++|+|.+.+|+.++ -++..|....
T Consensus 159 ~~~~VWGNHaEs~Vadlt~~~~~~e~G~~~~~~d~l~~~~----~~~~F~~~Ia~RAW~ilE~RG~TSA-aS~~~Asl~H 233 (314)
T TIGR01756 159 YDVVVWGNHAESMVADLTHAEFTKEDGKKQKVIDELSKDY----AEDDFFEVIAQRAWKILERRGFTSA-ASPVKASLQH 233 (314)
T ss_pred EEEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHH
T ss_conf 4778863772000578606999816883137888776522----5615899998999999840588353-3067899998
Q ss_pred HHHHHCCC--CEEEEEEEEECC--CCCCC-CEEEEEEEEECCCCCEEEEC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55452889--749999999736--44756-34788769997872288847-99988999999999999999999999765
Q gi|254781048|r 243 AESYLKNK--KNLLPCAAHLSG--QYGVE-GFYVGVPVVIGHKGVEKIVE-LNLSFDEKDAFQKSVKATVDLCNSCTKLV 316 (320)
Q Consensus 243 i~aIl~~~--~~v~~~s~~~~g--~yg~~-~v~~s~P~vig~~Gi~~i~~-l~Ls~~E~~~l~~sa~~i~~~~~~~~~l~ 316 (320)
.+|+|.++ ..+++++.++.+ -||++ ||-||+||.++++|-.++.| +++++|=+++|++.-+-+.++.+-+++.|
T Consensus 234 MkAWLFGT~~~~~lS~GIPVPE~n~YGI~PGv~FSFPCTVD~~G~vHv~E~~~~~~~l~~Kl~~Te~DL~~Er~~AL~~L 313 (314)
T TIGR01756 234 MKAWLFGTKPGEVLSLGIPVPEDNPYGIKPGVIFSFPCTVDEDGKVHVVEDFEVNDWLKEKLKQTEKDLIEEREVALKAL 313 (314)
T ss_pred HHHHHCCCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 78761578877767703347887898888874773385005887178861773378999988667888899999999742
No 34
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent; InterPro: IPR011273 This entry represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localised to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequently transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine diisulphide bonds. The enzyme from sorghum has been crystallised .; GO: 0046554 malate dehydrogenase (NADP+) activity, 0006108 malate metabolic process.
Probab=99.97 E-value=5.6e-30 Score=214.69 Aligned_cols=307 Identities=21% Similarity=0.294 Sum_probs=256.3
Q ss_pred CEEEEECC-CCHHHHHHHHHHHCCC-C-E----EEEE--ECCCCCHHHHHHHHHHHCCCCCCCCEE-EECCCHHHHCCCC
Q ss_conf 72899889-8136899999995799-8-6----9999--657881289883076205446887568-5269748837897
Q gi|254781048|r 4 NKIALIGS-GMIGGTLAHLAVLKKL-G-D----VVLL--DIVDGMPRGKALDIAESSPVEGFGAQL-CGTSDYSDIAEAD 73 (320)
Q Consensus 4 ~KV~IIGa-G~VG~~~a~~~~~~~l-~-e----i~L~--D~~~~~~~g~~~Dl~~~~~~~~~~~~v-~~~~d~~~l~~aD 73 (320)
-+|++-|+ |.+..++.|.++.+.+ . | +.|+ .+..+-++|.+|+|+|+. +|....+ ++.+.|+.+.++|
T Consensus 46 ~~~~v~Ga~G~i~nhllf~lasG~v~G~dqPial~llGsers~~aleGvameledsl--yPllrev~iG~dP~evf~~~d 123 (390)
T TIGR01757 46 VNVAVSGAAGQISNHLLFMLASGEVFGKDQPIALKLLGSERSKEALEGVAMELEDSL--YPLLREVSIGIDPYEVFEDAD 123 (390)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCHHEECCCHHHHHHHHHHHHHHHHHH--HHHHHHHHCCCCHHHHHHCCC
T ss_conf 434663464135677776641350115776300000201333566633344444333--234444211565578762166
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHH
Q ss_conf 89995566667655746789988999999997654126-67408871484207899998844998656110005256899
Q gi|254781048|r 74 VCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYA-PNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSAR 152 (320)
Q Consensus 74 ivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R 152 (320)
..++-...||.|||.|.+||+.|.+||.+.++.+.+.+ .+..+++|.||||..+.++.+..---|.|.|-.-|.||.+|
T Consensus 124 WalliGakPrGPGmera~ll~~nG~if~~qG~aln~~a~~~~kvlvvGnPCntnali~~~naP~iP~knfhaltrldenr 203 (390)
T TIGR01757 124 WALLIGAKPRGPGMERADLLDINGEIFADQGKALNEVASKNVKVLVVGNPCNTNALIALKNAPNIPRKNFHALTRLDENR 203 (390)
T ss_pred EEEEECCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 23444166899850278898622555467448888875256038996287541467753407766324567765434334
Q ss_pred HHHHHHHHCCCCCCCC-EEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCC
Q ss_conf 9999999719873355-056750788524651023544770155430015878767999984551015888875157654
Q gi|254781048|r 153 FRYFLAQEFGVSVESV-TALVLGSHGDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLLRSGSA 231 (320)
Q Consensus 153 ~~~~ia~~l~v~~~~V-~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~~kg~t 231 (320)
.+..||-+-|.--..| +..+||+|+-+|+|.|-.++|+|.|..+.++.....+ ++....++.+|..+|+.-|+ ++
T Consensus 204 akCqlalk~G~fy~~v~~~~iWGnhsttqvPdf~na~i~G~P~~~vi~d~~~l~---e~ft~~v~~rGGali~kWGr-ss 279 (390)
T TIGR01757 204 AKCQLALKSGKFYTSVSNVTIWGNHSTTQVPDFVNAKIGGKPAKEVIKDTKWLK---EEFTPKVQKRGGALIKKWGR-SS 279 (390)
T ss_pred HHHHHHHHCCHHHHCEEEEEEECCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHH---HHHHHHHHHCCCHHHHHHCC-CH
T ss_conf 565555531412220011567426543324312320238813689998889887---76556765315323333134-11
Q ss_pred CCCCHHHHHHHHHHHH--CCCCEEEEEEEEECCC-CCC-CCEEEEEEEEECCCCCEEEEC-CCCCHHHHHHHHHHHHHHH
Q ss_conf 3220323234455452--8897499999997364-475-634788769997872288847-9998899999999999999
Q gi|254781048|r 232 YYAPASSAIAIAESYL--KNKKNLLPCAAHLSGQ-YGV-EGFYVGVPVVIGHKGVEKIVE-LNLSFDEKDAFQKSVKATV 306 (320)
Q Consensus 232 ~~~~a~a~~~ii~aIl--~~~~~v~~~s~~~~g~-yg~-~~v~~s~P~vig~~Gi~~i~~-l~Ls~~E~~~l~~sa~~i~ 306 (320)
.-++|.++++-++++. ..+..+++.+++.+|. ||+ +++.||+||+-..+|=.++.. +.++++-+++++++..++.
T Consensus 280 aastavs~adai~~lv~Pt~~Gd~fst~v~~~GnPyG~~e~~~fs~PCrs~GdGdye~~~~~~~d~~l~~~~~~~e~el~ 359 (390)
T TIGR01757 280 AASTAVSIADAIKSLVVPTPEGDWFSTGVITDGNPYGIREGLVFSMPCRSKGDGDYEVVDDLVVDDYLREKIRKSEDELL 359 (390)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 45677779877787405578876233213206886431246268315556788632332111255899999875589988
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999765
Q gi|254781048|r 307 DLCNSCTKLV 316 (320)
Q Consensus 307 ~~~~~~~~l~ 316 (320)
...+-+..|+
T Consensus 360 ~ek~Cv~hl~ 369 (390)
T TIGR01757 360 KEKECVAHLI 369 (390)
T ss_pred HHHHHHHHHC
T ss_conf 7555776640
No 35
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.88 E-value=6.2e-20 Score=149.49 Aligned_cols=301 Identities=18% Similarity=0.162 Sum_probs=194.0
Q ss_pred EEEEECCCCHHHH--HHHHHH-HCCC--CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEEE
Q ss_conf 2899889813689--999999-5799--869999657881289883076205446887568526974-883789789995
Q gi|254781048|r 5 KIALIGSGMIGGT--LAHLAV-LKKL--GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIVT 78 (320)
Q Consensus 5 KV~IIGaG~VG~~--~a~~~~-~~~l--~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVit 78 (320)
||+|||+|.++.+ +...++ ...+ .||+|+|+++++++-...=.+......+...++..++|. ++++|||+|+.+
T Consensus 2 KI~iIGgGS~~ftp~li~~l~~~~~l~~~ei~L~Did~erl~~v~~l~~~~~~~~~~~~~v~~Ttd~~eAl~gADfV~~~ 81 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINT 81 (423)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEEE
T ss_conf 79999986487599999999608457899899988999999999999999998519981899968999984689999998
Q ss_pred CCC------------CCCCC------CC----HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCC
Q ss_conf 566------------66765------57----467899889999999976541266740887148420789999884499
Q gi|254781048|r 79 AGI------------PRKPS------MS----RDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGL 136 (320)
Q Consensus 79 ag~------------~~~~g------~~----R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~ 136 (320)
.-+ |.|-| +| -.-......+.+.++++.++++||+|++|+.|||+-++|..+.+.++
T Consensus 82 irvGg~~~r~~De~Iplk~Gv~~~vGET~G~GG~~~alRtIPv~leia~~i~e~~P~AwiiNytNP~~ivteal~r~~~- 160 (423)
T cd05297 82 IQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTP- 160 (423)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCC-
T ss_conf 7746824889888489883966044565477589998622899999999999879983899767888999999997389-
Q ss_pred CHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCHH----HHHHHCCCC---------
Q ss_conf 8656110005256899999999971987335505675078852465102354477015----543001587---------
Q gi|254781048|r 137 PSHMVVGMAGILDSARFRYFLAQEFGVSVESVTALVLGSHGDSMVPMLRYATVSGIPV----SDLVKLGWT--------- 203 (320)
Q Consensus 137 ~~~rViG~Gt~LDs~R~~~~ia~~l~v~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~----~~~~~~~~~--------- 203 (320)
-|++|. |.- -.-+++.+|+.+++++++++.-+.| =+.+--|.+....|+.+ .++++....
T Consensus 161 --~k~iGl-C~~-p~~~~~~la~~l~~~~~~v~~~~~G---LNH~~W~~~~~~~G~D~~p~L~e~~~~~~~~~~~~~~~~ 233 (423)
T cd05297 161 --IKTVGL-CHG-VQGTAEQLAKLLGEPPEEVDYQVAG---INHMAWLLKFEYNGEDLYPLLDEWIEEGSEEWDQLSPVR 233 (423)
T ss_pred --CCEEEE-CCC-HHHHHHHHHHHHCCCHHHCEEEEEC---CCEEEEEEEEEECCEECHHHHHHHHHCCCCCCHHHHHHH
T ss_conf --978987-977-6999999999829988991899950---544689998787880236999999971687721241689
Q ss_pred ---------------------------CHHHHHHH----------HHHHHCCHHHHHHHHCCCC-------CCCCCHHHH
Q ss_conf ---------------------------87679999----------8455101588887515765-------432203232
Q gi|254781048|r 204 ---------------------------TQEKIDQI----------VKRTREGGAEIVGLLRSGS-------AYYAPASSA 239 (320)
Q Consensus 204 ---------------------------~~~~~~~l----------~~~v~~~g~~ii~~~~kg~-------t~~~~a~a~ 239 (320)
..+..... .++.....++..+...... ..-.-+..+
T Consensus 234 ~~~~~~~g~~p~~~~~h~~eYl~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ge~a 313 (423)
T cd05297 234 FDMYRRYGLFPTESSEHLSEYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEELDPVKRSGEYA 313 (423)
T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 99999719741588887632023211346688754113555133999999999999998516554556200145637799
Q ss_pred HHHHHHHHCCCCEEEEEEEEECCCC-CC-CCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3445545288974999999973644-75-63478876999787228884799988999999999999999999999
Q gi|254781048|r 240 IAIAESYLKNKKNLLPCAAHLSGQY-GV-EGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATVDLCNSCT 313 (320)
Q Consensus 240 ~~ii~aIl~~~~~v~~~s~~~~g~y-g~-~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~~~~~~~~ 313 (320)
+++++||.+|++..+.+.+.=+|.. ++ .|.+.=+||.++++|++.+---++.+.-...++.-...-+-.++++.
T Consensus 314 ~~ii~ai~~~~~~~~~vNv~N~G~I~nLp~DavVEVpc~V~~~Gi~P~~vg~lP~~~~gLi~~~~~~e~L~VeAa~ 389 (423)
T cd05297 314 SPIIEALVTGKPRRINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPEKIGPLPPQLAALIRPRINVQELAVEAAL 389 (423)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999759971899988899857899999789998898599754144698989999999999999999999999
No 36
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=99.87 E-value=3.8e-19 Score=144.36 Aligned_cols=300 Identities=19% Similarity=0.220 Sum_probs=184.0
Q ss_pred EEEEECCCCHHHH-HHHHHHH--CC--CCEEEEEECC-CCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEE
Q ss_conf 2899889813689-9999995--79--9869999657-881289883076205446887568526974-88378978999
Q gi|254781048|r 5 KIALIGSGMIGGT-LAHLAVL--KK--LGDVVLLDIV-DGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIV 77 (320)
Q Consensus 5 KV~IIGaG~VG~~-~a~~~~~--~~--l~ei~L~D~~-~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVi 77 (320)
||+|||||.+=.. +...++. .. .+||+|+|++ +++++-...-.+......+...++..++|. ++++|||+||+
T Consensus 2 KI~iIGaGS~~tp~lv~~l~~~~~~l~~~ei~L~DID~~~rL~~~~~la~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~ 81 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVFT 81 (419)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEE
T ss_conf 79998974665589999998454348988899989985999999999999999960998089996799998369999999
Q ss_pred EC--C----------CCCCCCC----C----HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCC
Q ss_conf 55--6----------6667655----7----4678998899999999765412667408871484207899998844998
Q gi|254781048|r 78 TA--G----------IPRKPSM----S----RDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLP 137 (320)
Q Consensus 78 ta--g----------~~~~~g~----~----R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~ 137 (320)
+. | .|.+-|. | -.-..-...+.+.++++.+.++||+|+++..|||+-++|+.+.+.+
T Consensus 82 ~irvGg~~~r~~De~Ip~kyGvigQET~G~GG~~~alRtiP~~l~ia~~i~e~cP~AwliNytNP~~ivt~a~~r~~--- 158 (419)
T cd05296 82 QIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAVLRHT--- 158 (419)
T ss_pred EEEECCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCC---
T ss_conf 87337930767765438764976534767479998762289999999999986998389973787999999999668---
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHH-HHH-----------------
Q ss_conf 65611000525689999999997198733550567507885246510235447701554-300-----------------
Q gi|254781048|r 138 SHMVVGMAGILDSARFRYFLAQEFGVSVESVTALVLGSHGDSMVPMLRYATVSGIPVSD-LVK----------------- 199 (320)
Q Consensus 138 ~~rViG~Gt~LDs~R~~~~ia~~l~v~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~-~~~----------------- 199 (320)
.-|++|. |. --.-+.+.+|+.+|+++++++..+.|= +.+--+...+..|+.+.. +++
T Consensus 159 ~~k~vGl-Ch-~~~~~~~~la~~Lg~~~~~i~~~~~Gl---NH~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~~~~~ 233 (419)
T cd05296 159 GDRVIGL-CN-VPIGLQRRIAELLGVDPEDVFIDYAGL---NHLGWLRRVLLDGEDVLPELLEDLAALLSFEEGLLFGPE 233 (419)
T ss_pred CCCEEEE-CC-CHHHHHHHHHHHHCCCHHHEEEEEEEE---CCHHHHHHHEECCEECHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf 9988997-97-779899999999589879907899865---548675354059873449999987502676455778999
Q ss_pred ---CCC-----------CCHHHHHHHHHHHHCCHHH-------HHHHHCCCCCC-C--------C--CHHHHHHHHHHHH
Q ss_conf ---158-----------7876799998455101588-------88751576543-2--------2--0323234455452
Q gi|254781048|r 200 ---LGW-----------TTQEKIDQIVKRTREGGAE-------IVGLLRSGSAY-Y--------A--PASSAIAIAESYL 247 (320)
Q Consensus 200 ---~~~-----------~~~~~~~~l~~~v~~~g~~-------ii~~~~kg~t~-~--------~--~a~a~~~ii~aIl 247 (320)
.-+ ...+.+++..+.-..++.+ .++........ + + -+-.++++++||.
T Consensus 234 ~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~v~~~e~~l~~~~~~~~~~~~~~~~~~r~~~~y~e~a~~ii~ai~ 313 (419)
T cd05296 234 LLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELEKRGGAGYSEAALALISAIY 313 (419)
T ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99975997667744000179999987751498899999999999999737210258424554267526899999999997
Q ss_pred CCCCEEEEEEEEECCCC-CC-CCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88974999999973644-75-6347887699978722888479998899999999999999999999
Q gi|254781048|r 248 KNKKNLLPCAAHLSGQY-GV-EGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATVDLCNSC 312 (320)
Q Consensus 248 ~~~~~v~~~s~~~~g~y-g~-~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~~~~~~~ 312 (320)
+|++..+-+.+.=+|.- ++ .|.+.=+||.++++|+..+---+|.+.-...++.....-+-.++++
T Consensus 314 ~~~~~~~~vNV~N~G~I~nLp~d~vVEVp~~v~~~Gi~P~~vg~lP~~~~~L~~~~~~~e~LtveA~ 380 (419)
T cd05296 314 NDKGDIHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPLPVGPLPPAILGLIQQVKAYERLTIEAA 380 (419)
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4997089997788886789999858999889859974412169899899999999999999999999
No 37
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=99.87 E-value=6.5e-19 Score=142.86 Aligned_cols=301 Identities=18% Similarity=0.142 Sum_probs=188.1
Q ss_pred EEEEECCCCHHHH--HHHHH-HH-CCC--CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEE
Q ss_conf 2899889813689--99999-95-799--869999657881289883076205446887568526974-88378978999
Q gi|254781048|r 5 KIALIGSGMIGGT--LAHLA-VL-KKL--GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIV 77 (320)
Q Consensus 5 KV~IIGaG~VG~~--~a~~~-~~-~~l--~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVi 77 (320)
||+|||+|.+ .+ +...+ .. ..+ +||+|+|+++++++-...=.+......+...++..++|. ++++|||+|+.
T Consensus 2 KI~iIGaGS~-~t~~lv~~l~~~~~~l~~~ei~L~DId~erL~~~~~~a~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~ 80 (425)
T cd05197 2 KIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN 80 (425)
T ss_pred EEEEECCCHH-HHHHHHHHHHHCHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEE
T ss_conf 7999898368-789999999838433788989998899999999999999999961998389997899998568999999
Q ss_pred ECCC------------CCCCCCC--------HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCC
Q ss_conf 5566------------6676557--------4678998899999999765412667408871484207899998844998
Q gi|254781048|r 78 TAGI------------PRKPSMS--------RDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLP 137 (320)
Q Consensus 78 tag~------------~~~~g~~--------R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~ 137 (320)
+.-+ |.|-|.- -.-..-...+.+.++++.+.++||+|+++..|||+-++|..+.+.++
T Consensus 81 ~irvGg~~~r~~De~IplkyGv~gqeT~G~GG~~~alRtIPv~l~ia~~i~e~cP~AwliNytNP~~ivt~al~~~~~-- 158 (425)
T cd05197 81 QFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAVRRYVP-- 158 (425)
T ss_pred EEEECCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCC--
T ss_conf 887567057899986898759144437778899999842999999999999869980899737878999999997488--
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHH----HHHCCC-----------
Q ss_conf 65611000525689999999997198733550567507885246510235447701554----300158-----------
Q gi|254781048|r 138 SHMVVGMAGILDSARFRYFLAQEFGVSVESVTALVLGSHGDSMVPMLRYATVSGIPVSD----LVKLGW----------- 202 (320)
Q Consensus 138 ~~rViG~Gt~LDs~R~~~~ia~~l~v~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~----~~~~~~----------- 202 (320)
.-|++|. |.- -.-+++.+|+.+++++.+++..+.|= +.+--+.+.+..|+.+.. +++...
T Consensus 159 ~~k~vGL-Ch~-~~~~~~~la~~lg~~~~~i~~~~~Gl---NH~~w~~~~~~~G~D~~p~L~~~~~~~~~~~~~~~~~~~ 233 (425)
T cd05197 159 PEKAVGL-CNV-PIGVMEIVAKLLGESEEKVDWQYAGL---NHGIWLNRVRYNGGDVTPKLDEWVEEKSKDWKTENPFVD 233 (425)
T ss_pred CCCEEEE-CCC-HHHHHHHHHHHHCCCHHHCEEEEEEE---CCHHHHEEEEECCEECHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 8848985-866-79999999999499889967999976---646250210689920468999999861567655540134
Q ss_pred -------------------------CCHHHHHHH-------------HHHHHCCHHHHHHHH-CCCC----CCC---CCH
Q ss_conf -------------------------787679999-------------845510158888751-5765----432---203
Q gi|254781048|r 203 -------------------------TTQEKIDQI-------------VKRTREGGAEIVGLL-RSGS----AYY---APA 236 (320)
Q Consensus 203 -------------------------~~~~~~~~l-------------~~~v~~~g~~ii~~~-~kg~----t~~---~~a 236 (320)
......+.. ..+....-++..+.. .... ... .-+
T Consensus 234 ~~~~~~~~~~~~~~~~p~~yl~yy~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (425)
T cd05197 234 QLSPAAIDFYRFYGVLPNPYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVVELIKRGGRKYS 313 (425)
T ss_pred HHCCCHHHHHHCCCEEECCCCCEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHH
T ss_conf 32000699985389288477432111276665444321433322788988899999986545423460333125776268
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEEECCCC-CC-CCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2323445545288974999999973644-75-63478876999787228884799988999999999999999999999
Q gi|254781048|r 237 SSAIAIAESYLKNKKNLLPCAAHLSGQY-GV-EGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATVDLCNSCT 313 (320)
Q Consensus 237 ~a~~~ii~aIl~~~~~v~~~s~~~~g~y-g~-~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~~~~~~~~ 313 (320)
-.++.+++||.+|++..+-+.+.=+|.. ++ .|.+.=+||.++++|+..+---+|.+.-...++.....-+-.++++.
T Consensus 314 e~a~~ii~ai~~~~~~~~~vNv~N~G~I~nLp~d~vVEVpc~Vd~~Gi~P~~vg~lP~~~~~Li~~~~~~e~ltveAa~ 392 (425)
T cd05197 314 EAAIPLIRALLNDNGARFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPIKVGPLDRFVKGLLRQRKMRERLALEAFL 392 (425)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999998679982799976789878899999789974798489850340698979999999999999999999999
No 38
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=99.85 E-value=2.3e-18 Score=139.36 Aligned_cols=304 Identities=18% Similarity=0.171 Sum_probs=193.1
Q ss_pred CCCCEEEEECCCCHHHHHHH--HHH-HCCC--CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCE
Q ss_conf 99872899889813689999--999-5799--869999657881289883076205446887568526974-88378978
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAH--LAV-LKKL--GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADV 74 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~--~~~-~~~l--~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDi 74 (320)
|++-||+|||+|.++.+--. .+. ...+ .|+.|+|+++++.+-...=.+....-.+...++..++|. ++++|||+
T Consensus 1 m~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~ei~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAdf 80 (442)
T COG1486 1 MKKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEGADF 80 (442)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCE
T ss_conf 99736999899753147999989841755776669998387788999999999999963998589994589998447988
Q ss_pred EEEEC--C-C---------CCCCCCCHH------H--HHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHC
Q ss_conf 99955--6-6---------667655746------7--8998899999999765412667408871484207899998844
Q gi|254781048|r 75 CIVTA--G-I---------PRKPSMSRD------D--LLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFS 134 (320)
Q Consensus 75 vVita--g-~---------~~~~g~~R~------d--ll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~s 134 (320)
|+.+. | . |.|-|--+- . .-..+.+++-++++.+.++||+|+++..|||+-++|+.+.+.+
T Consensus 81 Vi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNPa~~vTeAv~r~~ 160 (442)
T COG1486 81 VITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAAIVTEAVRRLY 160 (442)
T ss_pred EEEEEEECCCCCCHHHHCCCHHHCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHC
T ss_conf 99987506843002231132641704544647207876302441999999999986977478743686999999999857
Q ss_pred CCCHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CCCEEEEECCCCCEEEEECCCCCCCCCHHHHHH----HCCC-------
Q ss_conf 9986561100052568999999999719873-355056750788524651023544770155430----0158-------
Q gi|254781048|r 135 GLPSHMVVGMAGILDSARFRYFLAQEFGVSV-ESVTALVLGSHGDSMVPMLRYATVSGIPVSDLV----KLGW------- 202 (320)
Q Consensus 135 g~~~~rViG~Gt~LDs~R~~~~ia~~l~v~~-~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~----~~~~------- 202 (320)
+ .-|++|. |.- ..-....+|+.|++.+ .+++.-+.|= +.+.-|..++..|..+..-+ +...
T Consensus 161 ~--~~K~VGl-Ch~-~~g~~~~lAe~L~~~~~~~l~~~~aGl---NH~~w~~~~~~~G~d~~~~l~~~~~~~~~~~~~~~ 233 (442)
T COG1486 161 P--KIKIVGL-CHG-PIGIAMELAEVLGLEPREDLRYRVAGL---NHMVWILRVRDDGEDLYPELLEALEEGGSPSEPEN 233 (442)
T ss_pred C--CCCEEEE-CCC-HHHHHHHHHHHHCCCCHHCEEEEEECC---CHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 8--7878975-884-578999999995899432146899503---02444656631671025999999742566776434
Q ss_pred ----------------------------------------------CCHHHHHHHHHHHHCCHHHHHHHHCCCC--CC-C
Q ss_conf ----------------------------------------------7876799998455101588887515765--43-2
Q gi|254781048|r 203 ----------------------------------------------TTQEKIDQIVKRTREGGAEIVGLLRSGS--AY-Y 233 (320)
Q Consensus 203 ----------------------------------------------~~~~~~~~l~~~v~~~g~~ii~~~~kg~--t~-~ 233 (320)
+..+...+.+.+......+. .+..+-. .. .
T Consensus 234 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~re~~~~e~~~~~-~~~~~p~~~~~~~ 312 (442)
T COG1486 234 KNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKP-ELKEKPEELEKRI 312 (442)
T ss_pred CCCCCCCHHHHHHHHCCCCCCCCCHHHHEEHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHCC
T ss_conf 333572367899972768656745011215476562364445642998899999999999987525-4330805565137
Q ss_pred ----CCHHHHHHHHHHHHCCCCEEEEEEEEECCCC-CC-CCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf ----2032323445545288974999999973644-75-63478876999787228884799988999999999999999
Q gi|254781048|r 234 ----APASSAIAIAESYLKNKKNLLPCAAHLSGQY-GV-EGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATVD 307 (320)
Q Consensus 234 ----~~a~a~~~ii~aIl~~~~~v~~~s~~~~g~y-g~-~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~~ 307 (320)
--+..++++++||.+|++.++.+.+.=+|.. ++ +|...=+||+++++|++.+...+|.+.-...+++....-+-
T Consensus 313 ~~~~~~~e~a~~ii~Ai~~~~~~~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~~g~lP~~~~~l~~~~i~~e~l 392 (442)
T COG1486 313 GAGKYSSEYASNIINAIENNKPSRIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLAVGDLPEFVKGLMHTNINVEEL 392 (442)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 86422478999999999659962899974788632699988089844787489875565588779999999999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254781048|r 308 LCNSC 312 (320)
Q Consensus 308 ~~~~~ 312 (320)
.+++.
T Consensus 393 tveA~ 397 (442)
T COG1486 393 TVEAA 397 (442)
T ss_pred HHHHH
T ss_conf 99999
No 39
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=99.85 E-value=3e-18 Score=138.60 Aligned_cols=301 Identities=18% Similarity=0.210 Sum_probs=185.2
Q ss_pred EEEEECCCCHHH-HHHH-HHHHC-CC--CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEEE
Q ss_conf 289988981368-9999-99957-99--869999657881289883076205446887568526974-883789789995
Q gi|254781048|r 5 KIALIGSGMIGG-TLAH-LAVLK-KL--GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIVT 78 (320)
Q Consensus 5 KV~IIGaG~VG~-~~a~-~~~~~-~l--~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVit 78 (320)
||+|||||.+-. .+.. ++... .+ +||+|+|+++++++-...=.+-.....+...++..++|. ++++|||+|+.+
T Consensus 2 KI~iIGaGS~~t~~li~~l~~~~~~l~~~ei~L~DId~~rL~~~~~la~~~~~~~g~~~~i~~ttdr~eAL~gADfVi~~ 81 (437)
T cd05298 2 KIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFAQ 81 (437)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEEE
T ss_conf 69998984687799999998282006988899977999999999999999998529981799967999985799999996
Q ss_pred CCC------------CCCCCCCHHH--------HHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCH
Q ss_conf 566------------6676557467--------89988999999997654126674088714842078999988449986
Q gi|254781048|r 79 AGI------------PRKPSMSRDD--------LLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPS 138 (320)
Q Consensus 79 ag~------------~~~~g~~R~d--------ll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~ 138 (320)
.-+ |.+-|..-.| ....+.+.+-++++.+.++||+|+++..|||+-++|+.+.+. +|.
T Consensus 82 irvGg~~~r~~De~Ip~kyGivgqeT~G~GGi~~alRtiPv~ldia~di~e~cP~AwliNytNP~~~vt~al~~~--~~~ 159 (437)
T cd05298 82 IRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEALRRL--FPN 159 (437)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEEEHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHH--CCC
T ss_conf 652683267888767987597760156646224011449999999999998799928997578789999999974--899
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEECC-CCCEEEEECCCCCC-CCCHHHHH----HHCCCC---------
Q ss_conf 5611000525689999999997198733550567507-88524651023544-77015543----001587---------
Q gi|254781048|r 139 HMVVGMAGILDSARFRYFLAQEFGVSVESVTALVLGS-HGDSMVPMLRYATV-SGIPVSDL----VKLGWT--------- 203 (320)
Q Consensus 139 ~rViG~Gt~LDs~R~~~~ia~~l~v~~~~V~~~ViGe-HGds~vp~~S~~~v-~g~p~~~~----~~~~~~--------- 203 (320)
-|++|. |. --.-++..+|+.+++++++|+..+.|= | +.-+.+... +|+.+... ++....
T Consensus 160 ~k~vGL-Ch-~~~~~~~~la~~Lg~~~~~v~~~~aGlNH----~~w~~~~~~~~G~D~~p~l~e~~~~~~~~~~~~~~~~ 233 (437)
T cd05298 160 ARILNI-CD-MPIAIMDSMAAILGLDRKDLEPDYFGLNH----FGWFTKIYDKQGEDLLPKLREHVKENGYLPPDSDEEH 233 (437)
T ss_pred CCEEEE-CC-CHHHHHHHHHHHHCCCHHHEEEEEEECCH----HHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHC
T ss_conf 988988-97-88999999999958988991788961042----9999785016885847999999973577766410101
Q ss_pred -----------------------CH----HH--HHHHHHHHH---CCHHHHH-----------H-HHCCCC---CCC-C-
Q ss_conf -----------------------87----67--999984551---0158888-----------7-515765---432-2-
Q gi|254781048|r 204 -----------------------TQ----EK--IDQIVKRTR---EGGAEIV-----------G-LLRSGS---AYY-A- 234 (320)
Q Consensus 204 -----------------------~~----~~--~~~l~~~v~---~~g~~ii-----------~-~~~kg~---t~~-~- 234 (320)
+. .. .+++.++.+ .++.+++ + ....+. ..+ +
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~p~~y~~yy~~~~~~~~~~~~~~~r~~~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~ 313 (437)
T cd05298 234 RDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKIIETGTAEGSTFHVD 313 (437)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 57058899999999998556548771688873879999760866770999999899999999998763367542100365
Q ss_pred -CHHHHHHHHHHHHCCCCEEEEEEEEECCCC-CC-CCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf -032323445545288974999999973644-75-634788769997872288847999889999999999999999999
Q gi|254781048|r 235 -PASSAIAIAESYLKNKKNLLPCAAHLSGQY-GV-EGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKATVDLCNS 311 (320)
Q Consensus 235 -~a~a~~~ii~aIl~~~~~v~~~s~~~~g~y-g~-~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~i~~~~~~ 311 (320)
-+..+++++++|.+|++..+-+.+.=+|.- ++ .|++.=+||+++++|+..+---+|.+.-...++.....-+-.+++
T Consensus 314 ~~~e~~v~ii~ai~~~~~~~~~vNV~N~G~I~nLP~d~vVEvp~~Vd~~Gi~P~~vg~lP~~~~~L~~~~~~~e~LtveA 393 (437)
T cd05298 314 VHGEYIVDLAASIAYNTKERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPLVVGKIPTFYKGLMEQQVAYEKLLVEA 393 (437)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 32899999999985299857999858998578999986799888976998531416989989999999999999999999
Q ss_pred HH
Q ss_conf 99
Q gi|254781048|r 312 CT 313 (320)
Q Consensus 312 ~~ 313 (320)
+.
T Consensus 394 al 395 (437)
T cd05298 394 YL 395 (437)
T ss_pred HH
T ss_conf 99
No 40
>pfam02056 Glyco_hydro_4 Family 4 glycosyl hydrolase.
Probab=99.60 E-value=3.1e-14 Score=112.50 Aligned_cols=155 Identities=19% Similarity=0.204 Sum_probs=109.1
Q ss_pred EEEEECCCCHHHHHHH---HHHHCCC--CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEEE
Q ss_conf 2899889813689999---9995799--869999657881289883076205446887568526974-883789789995
Q gi|254781048|r 5 KIALIGSGMIGGTLAH---LAVLKKL--GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIVT 78 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~---~~~~~~l--~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVit 78 (320)
||+|||+|.+..+... ++....+ .|++|+|+++++++-...=.+......+...++..++|. ++++|||+|+.+
T Consensus 1 KI~iIGaGS~~~~~~~~~d~~~~~~l~~~ei~L~DId~~rL~~~~~l~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183)
T pfam02056 1 KIVIIGGGSTITPKNLLGDLDHTEELPGRELALYDIDEERLDAIQTACKKLVDEAGPDIKFEKTTDRKEALTDADFVINA 80 (183)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCEEEEE
T ss_conf 98999985444399999999608568989999977999999999999999999619983999978999996689999998
Q ss_pred CCCCC------------CCCCC----------HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCC
Q ss_conf 56666------------76557----------467899889999999976541266740887148420789999884499
Q gi|254781048|r 79 AGIPR------------KPSMS----------RDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGL 136 (320)
Q Consensus 79 ag~~~------------~~g~~----------R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~ 136 (320)
.-+-. +-|.. -.-....+.+.+-++++.+.++|||+++++.|||+-++|+.+.+. +
T Consensus 81 irvG~~~~r~~De~Iplk~Gv~~~~~eT~G~GG~~~alRtip~~l~ia~~i~e~~P~AwliNytNP~~~vt~al~r~--~ 158 (183)
T pfam02056 81 IRVGLLPARELDEKIPLRHGVVGTIQETVGPGGIFRGLRTIPVFFDIAKDIEELCPDAWVLNYTNPAAMVTEAVYRR--Y 158 (183)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHH--C
T ss_conf 64077148887776799839653233245722888776018999999999999799838998278889999999985--8
Q ss_pred CHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 865611000525689999999997198
Q gi|254781048|r 137 PSHMVVGMAGILDSARFRYFLAQEFGV 163 (320)
Q Consensus 137 ~~~rViG~Gt~LDs~R~~~~ia~~l~v 163 (320)
|.-|++|. |. -..-+...+|+.+|+
T Consensus 159 ~~~k~vGl-Ch-~~~~~~~~lA~~lGv 183 (183)
T pfam02056 159 PNIKAVGL-CH-SPIGIEERLAKILGL 183 (183)
T ss_pred CCCCEEEE-CC-CHHHHHHHHHHHCCC
T ss_conf 99988996-98-779999999998097
No 41
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.76 E-value=3.4e-07 Score=66.79 Aligned_cols=162 Identities=21% Similarity=0.199 Sum_probs=103.9
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH--------HHHHHCCCCCCCCEEEECCCHH-HHCCCCEE
Q ss_conf 28998898136899999995799869999657881289883--------0762054468875685269748-83789789
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKAL--------DIAESSPVEGFGAQLCGTSDYS-DIAEADVC 75 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~--------Dl~~~~~~~~~~~~v~~~~d~~-~l~~aDiv 75 (320)
||+|+|.|.||-+.+-+++..+ -|++.+|++++|.+..-. .|++...-.....+...++||+ +++++|++
T Consensus 2 kI~viGtGYVGLv~g~~lA~~G-HeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELG-HEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEEECCHHHHHHCCCEE
T ss_conf 1589888556887899998709-848999578899999867999976705899998462357279874788896259779
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE--CCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHH
Q ss_conf 99556666765574678998899999999765412667408871--4842078999988449986561100052568999
Q gi|254781048|r 76 IVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICI--TNPLDAMVWALQKFSGLPSHMVVGMAGILDSARF 153 (320)
Q Consensus 76 Vitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivv--tNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~ 153 (320)
+|+.|.|.++.- -. +...+...++.+.++.+...++|+ |=|+-....+-.+.--..+.|=|+...+-+=.|=
T Consensus 81 fIavgTP~~~dg-~a-----Dl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLRE 154 (414)
T COG1004 81 FIAVGTPPDEDG-SA-----DLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLRE 154 (414)
T ss_pred EEECCCCCCCCC-CC-----CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEECCHHHHCC
T ss_conf 997489999889-73-----289999999999862678739998488798846999999986346777507618678447
Q ss_pred HHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 9999997198733550567507885
Q gi|254781048|r 154 RYFLAQEFGVSVESVTALVLGSHGD 178 (320)
Q Consensus 154 ~~~ia~~l~v~~~~V~~~ViGeHGd 178 (320)
-+.+.+.++ |+ =.|+|...+
T Consensus 155 G~Av~D~~~--Pd---RIViG~~~~ 174 (414)
T COG1004 155 GSAVYDFLY--PD---RIVIGVRSE 174 (414)
T ss_pred CCHHHHCCC--CC---EEEECCCCH
T ss_conf 523443158--98---389925771
No 42
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.61 E-value=3.1e-07 Score=67.07 Aligned_cols=145 Identities=21% Similarity=0.211 Sum_probs=87.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCC------CCCCEEEECCCHHHHCCCCEEEE
Q ss_conf 728998898136899999995799869999657881289883076205446------88756852697488378978999
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVE------GFGAQLCGTSDYSDIAEADVCIV 77 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~------~~~~~v~~~~d~~~l~~aDivVi 77 (320)
+||+|||||..|..+|+.++..+ .++.|+|++++.++--..-++...... ....++..++|+++++|||+|+-
T Consensus 6 k~VaViGAG~MG~gIA~~~a~~G-~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~i~~~~~l~a~~~aDlViE 84 (310)
T PRK06130 6 QNLAIIGAGAMGSGIAALFASKG-LDVVLIDPMPGALERAAQVIERQLGVYAPGAIAGTLQRIRMDAGLEAACGADLVIE 84 (310)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEECCCHHHHCCCCEEEE
T ss_conf 88989787799999999998589-98899979999999999999998653276669998741021378889668999998
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHH--------------
Q ss_conf 556666765574678998899999999765412667408871484207899998844998656110--------------
Q gi|254781048|r 78 TAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVG-------------- 143 (320)
Q Consensus 78 tag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG-------------- 143 (320)
+. | +|.++-+++-.++.++++.. .|++||-.-.....+++.+.. |+|++|
T Consensus 85 av--~------------E~l~iK~~lf~~le~~~~~~-~IlASNTSsl~is~ia~~~~~-p~R~ig~HffnP~~~m~LVE 148 (310)
T PRK06130 85 AV--P------------EKLDLKRDIFARLDTLCDPQ-TIFATNTSGLSINAIAQAVTR-RERFVGTHFFTPADVIPLVE 148 (310)
T ss_pred CC--C------------CCHHHHHHHHHHHHCCCCCC-CEEEECCCCCCCHHHHHHCCC-HHHEEEEEECCCCCCCCCEE
T ss_conf 88--1------------77899999999986068988-389964887760678886389-87815544437767766652
Q ss_pred ----HCCCHHHHHHHHHHHHHCCCCC
Q ss_conf ----0052568999999999719873
Q gi|254781048|r 144 ----MAGILDSARFRYFLAQEFGVSV 165 (320)
Q Consensus 144 ----~Gt~LDs~R~~~~ia~~l~v~~ 165 (320)
..|.-++.-.-..+++.++-.|
T Consensus 149 Iv~g~~Ts~~~~~~~~~~~~~~gk~p 174 (310)
T PRK06130 149 VVRNDDTSPQTVATVMAMLRSIGKRP 174 (310)
T ss_pred ECCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 23789898999999999999719879
No 43
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.61 E-value=2e-07 Score=68.32 Aligned_cols=125 Identities=17% Similarity=0.233 Sum_probs=74.8
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHC----CC--C------CCCCEEEECCCHHHHCC
Q ss_conf 728998898136899999995799869999657881289883076205----44--6------88756852697488378
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESS----PV--E------GFGAQLCGTSDYSDIAE 71 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~----~~--~------~~~~~v~~~~d~~~l~~ 71 (320)
+||+|||||..|+.+|..++..+ .++.|+|++++.++.-...+.... .. . ....++..++|+++++|
T Consensus 3 ~kV~ViGaG~mG~~IA~~~a~~G-~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ 81 (284)
T PRK07819 3 QRVGVVGAGQMGSGIAEVCARAG-VDVLVFETTEEAATAGRNRIEKSLERAVSAGKLTERERDAALARLTFTTDLEDLAD 81 (284)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHCC
T ss_conf 67999897789999999999579-90899979889999999999999999987278987999999963706689999765
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 9789995566667655746789988999999997654126674088714842078999988449986561100
Q gi|254781048|r 72 ADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGM 144 (320)
Q Consensus 72 aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~ 144 (320)
||+|+-+.- +|.++-+++-.++.+++++.-.|++||-.-.....++..+.. |.|++|+
T Consensus 82 adlViEav~--------------E~l~~K~~l~~~ld~~~~~p~~IlaSNTS~l~is~la~~~~~-p~R~ig~ 139 (284)
T PRK07819 82 RQLVIEAVV--------------EDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKR-PGRVLGL 139 (284)
T ss_pred CCEEEECCC--------------CCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHCCCC-HHHHCCC
T ss_conf 999999073--------------878888999999997428998599965888761344411588-7771156
No 44
>PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.59 E-value=4.3e-07 Score=66.10 Aligned_cols=146 Identities=23% Similarity=0.257 Sum_probs=94.2
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHH---CCCC---------CCCCEEEECCCHHHHC
Q ss_conf 872899889813689999999579986999965788128988307620---5446---------8875685269748837
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAES---SPVE---------GFGAQLCGTSDYSDIA 70 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~---~~~~---------~~~~~v~~~~d~~~l~ 70 (320)
-+||+|||+|..|+.+|..++..+. ++.|+|++++.++.-..-+... ..-. ....++..++|+++++
T Consensus 3 i~~VaViGaGtMG~gIA~~~a~aG~-~V~l~D~~~~~l~~a~~~i~~~l~~~~~~g~~~~~~~~~~~~ri~~~~~l~~l~ 81 (503)
T PRK08268 3 IATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARAGAAAAARDGIAATLAKLVEKGKLTAEQAEAALARLRPVEALADLA 81 (503)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEECCHHHHC
T ss_conf 6789997968899999999993899-089997998999999999999999999769999889999984747417788975
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHH-------
Q ss_conf 8978999556666765574678998899999999765412667408871484207899998844998656110-------
Q gi|254781048|r 71 EADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVG------- 143 (320)
Q Consensus 71 ~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG------- 143 (320)
+||+||-+.- +|..+-+++-.++.+++|.. .|++||-.-+....+...++.| +|++|
T Consensus 82 ~aDlVIEAV~--------------E~l~~K~~vf~~l~~~~~~~-~IlASNTSsL~it~iA~~~~~P-eR~iG~HFfnP~ 145 (503)
T PRK08268 82 DCDLVVEAIV--------------ERLDVKQALFAQLEAIVSDD-CILATNTSSLSITAIAAALKHP-ERVAGLHFFNPV 145 (503)
T ss_pred CCCEEEECCC--------------CCHHHHHHHHHHHHHHCCCC-CEEEECCCCCCHHHHHHHCCCC-CEEEEEEECCCC
T ss_conf 7999999360--------------67899999999998547988-5798417767799999746984-407887715872
Q ss_pred -----------HCCCHHHHHHHHHHHHHCCCCC
Q ss_conf -----------0052568999999999719873
Q gi|254781048|r 144 -----------MAGILDSARFRYFLAQEFGVSV 165 (320)
Q Consensus 144 -----------~Gt~LDs~R~~~~ia~~l~v~~ 165 (320)
..|.-++...-..+++.+|..|
T Consensus 146 ~~m~LVEVV~g~~Ts~e~v~~~~~~~~~lGK~p 178 (503)
T PRK08268 146 PLMKLVEVVSGLATDPAVADALYALARRWGHTP 178 (503)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 446048880799999999999999999829804
No 45
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.57 E-value=3.4e-07 Score=66.81 Aligned_cols=147 Identities=27% Similarity=0.352 Sum_probs=87.0
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHH----HHHCC---C-----CCCCCEEEECCCHHH
Q ss_conf 99872899889813689999999579986999965788128988307----62054---4-----688756852697488
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDI----AESSP---V-----EGFGAQLCGTSDYSD 68 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl----~~~~~---~-----~~~~~~v~~~~d~~~ 68 (320)
|.-+||+|||+|..|..+|..++..+. ++.|+|++++.++.-..-+ +.... . .....++..+.|+++
T Consensus 1 m~i~~VaViGaG~mG~~IA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~ 79 (282)
T PRK05808 1 MSIQKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDEAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD 79 (282)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHH
T ss_conf 972689998978899999999995799-3899979989999999999999999997088642669999952636688889
Q ss_pred HCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEECCCCHHHHHHHHHHCCCCHHHHH-----
Q ss_conf 37897899955666676557467899889999999976541266-740887148420789999884499865611-----
Q gi|254781048|r 69 IAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAP-NSFVICITNPLDAMVWALQKFSGLPSHMVV----- 142 (320)
Q Consensus 69 l~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p-~~i~ivvtNPvDv~~~~~~~~sg~~~~rVi----- 142 (320)
++|||+|+-+.- +|..+-+++-.++.+++| ++ |++||-.-.....+++.++-| .|++
T Consensus 80 ~~~aDlViEav~--------------E~l~iK~~vf~~le~~~~~~~--IlaSnTSsl~is~la~~~~~p-~R~ig~Hff 142 (282)
T PRK05808 80 LKDADLVIEAAV--------------ENMDIKKKIFAQLDEIAKPEA--ILATNTSSLSITELAAATKRP-DKVIGMHFF 142 (282)
T ss_pred HCCCCEEEECCC--------------CCHHHHHHHHHHHHHHCCCCC--EEEECCCCCCHHHHHHHCCCC-HHHCCCCCC
T ss_conf 675999998775--------------634556999999995579984--899758877669999772992-542055667
Q ss_pred -------------HHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf -------------00052568999999999719873
Q gi|254781048|r 143 -------------GMAGILDSARFRYFLAQEFGVSV 165 (320)
Q Consensus 143 -------------G~Gt~LDs~R~~~~ia~~l~v~~ 165 (320)
|..|.-++...-..+++.+|..|
T Consensus 143 nP~~~~~lVEiv~g~~Ts~~~~~~~~~~~~~lgk~p 178 (282)
T PRK05808 143 NPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTP 178 (282)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 872337116672799999999999999998749847
No 46
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.53 E-value=4.3e-07 Score=66.11 Aligned_cols=147 Identities=20% Similarity=0.274 Sum_probs=87.9
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHH----HHHC--------CCCCCCCEEEECCCHHH
Q ss_conf 99872899889813689999999579986999965788128988307----6205--------44688756852697488
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDI----AESS--------PVEGFGAQLCGTSDYSD 68 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl----~~~~--------~~~~~~~~v~~~~d~~~ 68 (320)
|.=+||+|||||..|+.+|++++..+. ++.|+|++++.++.-..-+ .... ........+..++|+++
T Consensus 2 ~~ik~VaViGAG~MG~giA~~~a~~G~-~V~l~D~~~e~~~~~~~~i~~~l~~~~~~~~l~~~~~~~~l~~i~~~~~~~~ 80 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLESGMATINGNLARQVAKGKISEEARAAALARITTATTLDD 80 (292)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHH
T ss_conf 998889998966999999999996799-6899979889999999999999999997068888999999840777689889
Q ss_pred HCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEECCCCHHHHHHHHHHCCCCHHHHHH----
Q ss_conf 37897899955666676557467899889999999976541266-7408871484207899998844998656110----
Q gi|254781048|r 69 IAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAP-NSFVICITNPLDAMVWALQKFSGLPSHMVVG---- 143 (320)
Q Consensus 69 l~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p-~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG---- 143 (320)
+++||+|+-+. | +|..+-+++-.++.++++ ++ |++||-.-+....++..+..| +|++|
T Consensus 81 ~~~aDlViEav--~------------E~l~iK~~lf~~l~~~~~~~~--IlaSNTSsl~is~la~~~~~p-~R~ig~Hff 143 (292)
T PRK07530 81 LADCDLVIEAA--T------------EDETVKRKIFAQLCPVLKPEA--ILASNTSSISITRLASSTDRP-ERFIGIHFM 143 (292)
T ss_pred HCCCCEEEECC--C------------CCHHHHHHHHHHHHHHCCCCC--EEEECCCCCCCHHHHHHCCCH-HHHCCCCCC
T ss_conf 66499999888--4------------745878989999986269884--898758887505666643784-764363216
Q ss_pred --------------HCCCHHHHHHHHHHHHHCCCCC
Q ss_conf --------------0052568999999999719873
Q gi|254781048|r 144 --------------MAGILDSARFRYFLAQEFGVSV 165 (320)
Q Consensus 144 --------------~Gt~LDs~R~~~~ia~~l~v~~ 165 (320)
..|.-++.-.-..+.+.+|-.|
T Consensus 144 nP~~~~~LVEIv~g~~Ts~~~~~~~~~~~~~lgk~p 179 (292)
T PRK07530 144 NPVPVMKLVELIRGIATDEATFEAAKAFVTKLGKTI 179 (292)
T ss_pred CCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 870216226663899998999999999999749850
No 47
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.52 E-value=8.6e-07 Score=64.19 Aligned_cols=149 Identities=26% Similarity=0.207 Sum_probs=87.7
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH--------HHHHCCCCCCCCEEEECCCHHH-HCCCCEE
Q ss_conf 289988981368999999957998699996578812898830--------7620544688756852697488-3789789
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALD--------IAESSPVEGFGAQLCGTSDYSD-IAEADVC 75 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~D--------l~~~~~~~~~~~~v~~~~d~~~-l~~aDiv 75 (320)
||+|||.|+||..+|..++..+. +++-+|+++++.+....- +++.....-...+...++|+++ +++||++
T Consensus 2 kI~ViGlGyVGl~~a~~lA~~G~-~V~g~D~d~~~i~~l~~g~~p~~E~gl~~ll~~~~~~~~l~~ttd~~~~i~~~dii 80 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEECCHHHHHHHCCEE
T ss_conf 79998978779999999994899-48999899999999977989978989899999998639979987889987209999
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE--CCCCH----HHHHHHHHHCCCCHHHHHHHCCCHH
Q ss_conf 99556666765574678998899999999765412667408871--48420----7899998844998656110005256
Q gi|254781048|r 76 IVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICI--TNPLD----AMVWALQKFSGLPSHMVVGMAGILD 149 (320)
Q Consensus 76 Vitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivv--tNPvD----v~~~~~~~~sg~~~~rViG~Gt~LD 149 (320)
+|+.+.|.+++.+ -+...+.+..+.+.++..++.++++ |=|.- +...+.-+.+|+...+=|..+-.-+
T Consensus 81 ~I~V~TP~~~~g~------~d~s~l~~a~~~i~~~l~~~~lvii~STV~pGTt~~i~~~ile~~~~~~~g~df~v~~~PE 154 (411)
T TIGR03026 81 IICVPTPLKEDGS------PDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPE 154 (411)
T ss_pred EEECCCCCCCCCC------CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEHHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 9976898666887------2138999999999976689998999578686810489999887740466688547996835
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999997
Q gi|254781048|r 150 SARFRYFLAQE 160 (320)
Q Consensus 150 s~R~~~~ia~~ 160 (320)
-.|-...+.+.
T Consensus 155 fl~eG~a~~d~ 165 (411)
T TIGR03026 155 FLREGNAVHDL 165 (411)
T ss_pred CCCCCCCCCCC
T ss_conf 46874722342
No 48
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.51 E-value=4.5e-07 Score=66.02 Aligned_cols=148 Identities=17% Similarity=0.261 Sum_probs=86.6
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH-------HHHHHCC---CC-----CCCCEEEECCC
Q ss_conf 998728998898136899999995799869999657881289883-------0762054---46-----88756852697
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKAL-------DIAESSP---VE-----GFGAQLCGTSD 65 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~-------Dl~~~~~---~~-----~~~~~v~~~~d 65 (320)
|.-+||+|||||..|+.+|..++..+. ++.|+|++++.++.-.. .+..... .. ....++..+++
T Consensus 1 M~Ik~VaViGaG~MG~gIA~~~a~~G~-~V~l~D~~~~~l~~a~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~ 79 (291)
T PRK06035 1 MDIKVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTS 79 (291)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC
T ss_conf 995889998876889999999995899-8899989989999999999971899999986689999999999836643588
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHH--
Q ss_conf 488378978999556666765574678998899999999765412667408871484207899998844998656110--
Q gi|254781048|r 66 YSDIAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVG-- 143 (320)
Q Consensus 66 ~~~l~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG-- 143 (320)
++++++||+|+-+. | +|..+-+++-.++.++++... |++||-.-.....+++....| +|++|
T Consensus 80 ~~~~~~aDlViEav--~------------E~l~iK~~lf~~l~~~~~~~~-IlaSNTSsl~is~ia~~~~~p-~R~ig~H 143 (291)
T PRK06035 80 YESLSDADFIVEAV--P------------EKLDLKRKVFAELERNVSPET-IIASNTSGIMIAEIATALERK-DRFIGMH 143 (291)
T ss_pred HHHHCCCCEEEECC--C------------CCHHHHHHHHHHHHHHCCCCC-EEEECCCCCCHHHHHHHCCCC-HHEEEEC
T ss_conf 88976599999888--3------------889999999999996589983-798608877869999765994-2236411
Q ss_pred ----------------HCCCHHHHHHHHHHHHHCCCCC
Q ss_conf ----------------0052568999999999719873
Q gi|254781048|r 144 ----------------MAGILDSARFRYFLAQEFGVSV 165 (320)
Q Consensus 144 ----------------~Gt~LDs~R~~~~ia~~l~v~~ 165 (320)
..|.-++.-.-..+.+.+|-.|
T Consensus 144 ffnP~~~~~LVEIv~g~~Ts~~~~~~~~~~~~~lgk~p 181 (291)
T PRK06035 144 WFNPAPVMKLIEVVRAALTSEETFNTTVELSKKIGKIP 181 (291)
T ss_pred CCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 26870116336653899998999999999999759848
No 49
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=98.50 E-value=4.2e-07 Score=66.20 Aligned_cols=156 Identities=26% Similarity=0.320 Sum_probs=89.3
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCC---CC---------CCCCEEEECCCHHHHCCC
Q ss_conf 289988981368999999957998699996578812898830762054---46---------887568526974883789
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSP---VE---------GFGAQLCGTSDYSDIAEA 72 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~---~~---------~~~~~v~~~~d~~~l~~a 72 (320)
||+|||+|..|..+|+.++..+ .++.++|++++.++.-...++.... .. ....++..++|++++.+|
T Consensus 1 kV~ViGaG~mG~~iA~~~a~~G-~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a 79 (180)
T pfam02737 1 KVAVIGAGTMGAGIAQVFARAG-LEVVLVDISEEALEKARARIEKSLARLVEKGRLTEEDVDAVLARISFTTDLADAVDA 79 (180)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHCCC
T ss_conf 9899997889999999999679-939999799899999999999989999972567567699998524105889997589
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHH
Q ss_conf 78999556666765574678998899999999765412667408871484207899998844998656110005256899
Q gi|254781048|r 73 DVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSAR 152 (320)
Q Consensus 73 DivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R 152 (320)
|+|+-+.- +|.++-+++-.++.+++|.. .|+.|| .|++|..+
T Consensus 80 dlViEav~--------------E~l~iK~~l~~~l~~~~~~~-~IlaSn-----------TS~l~is~------------ 121 (180)
T pfam02737 80 DLVIEAVP--------------ENLDLKRELFAELDAIAPPD-AILASN-----------TSSLSITE------------ 121 (180)
T ss_pred CEEEECCC--------------CCHHHHHHHHHHHHHHCHHH-EEEEEC-----------CCCCCHHH------------
T ss_conf 99999251--------------76889999999999743033-088752-----------67689999------------
Q ss_pred HHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 9999999719873355056750788524651023544770155430015878767999984551
Q gi|254781048|r 153 FRYFLAQEFGVSVESVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTR 216 (320)
Q Consensus 153 ~~~~ia~~l~v~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v~ 216 (320)
+++.+. +|. .++|-|=-+ |+ .-.|+.|..+...++.+-++.+.+-.+
T Consensus 122 ----la~~~~-~p~----R~ig~Hffn--P~------~~~pLVEIv~g~~T~~~~~~~~~~~~~ 168 (180)
T pfam02737 122 ----LAAATK-RPE----RFIGLHFFN--PP------PLMPLVEVVRGEKTSPETVATVVELAK 168 (180)
T ss_pred ----HHHHCC-CCC----EEEEECCCC--CC------CCCCEEEECCCCCCCHHHHHHHHHHHH
T ss_conf ----997479-876----699975688--77------768538883899989999999999999
No 50
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.49 E-value=7.3e-07 Score=64.66 Aligned_cols=126 Identities=19% Similarity=0.305 Sum_probs=75.1
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH---HHHHHH----CCCCC------CCCEEEECCCHH
Q ss_conf 99872899889813689999999579986999965788128988---307620----54468------875685269748
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKA---LDIAES----SPVEG------FGAQLCGTSDYS 67 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~---~Dl~~~----~~~~~------~~~~v~~~~d~~ 67 (320)
|.-+||+|||||..|+.+|..++..+ .++.|+|++++.++.-. ..+.+. -...+ ...++..++|++
T Consensus 1 M~i~~VaViGaG~MG~gIA~~~a~~G-~~V~l~D~~~~~l~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dl~ 79 (288)
T PRK08293 1 MTIKKVTVAGAGVLGSQIAFQTAFKG-FDVTIYDISEEALDAAKRRLAKLADRYVRDLHLTDEAFAAAAKNRITFTTDLA 79 (288)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHH
T ss_conf 99578999897889999999999579-92899989889999999999999999997059991789999980773058989
Q ss_pred -HHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHH
Q ss_conf -83789789995566667655746789988999999997654126-674088714842078999988449986561100
Q gi|254781048|r 68 -DIAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYA-PNSFVICITNPLDAMVWALQKFSGLPSHMVVGM 144 (320)
Q Consensus 68 -~l~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~ 144 (320)
+++|||+|+-+. | +|..+-+++-.++.+++ |++ |++||-.-.....+++.++.| .|++|+
T Consensus 80 ~a~~~aDlViEav--~------------E~l~iK~~lf~~le~~~~~~~--IlaSNTSsl~it~la~~~~~p-~R~ig~ 141 (288)
T PRK08293 80 QAVKDADLVIEAV--P------------EDPEIKGDFYEQLAEVAPEKT--IFATNSSTLLPSQFADATGRP-EKFLAL 141 (288)
T ss_pred HHHCCCCEEEECC--C------------CCHHHHHHHHHHHHHHCCCCE--EEEECCCCCCHHHHHHHCCCC-HHEEEE
T ss_conf 9846699999978--0------------879999999999997467766--998668767657998861992-233430
No 51
>PRK07660 consensus
Probab=98.44 E-value=9e-07 Score=64.06 Aligned_cols=148 Identities=22% Similarity=0.228 Sum_probs=85.6
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH----HHHHHCCC--------CCCCCEEEECCCHHH
Q ss_conf 998728998898136899999995799869999657881289883----07620544--------688756852697488
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKAL----DIAESSPV--------EGFGAQLCGTSDYSD 68 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~----Dl~~~~~~--------~~~~~~v~~~~d~~~ 68 (320)
|.-+||+|||||..|+.+|..++..+ .++.|+|++++.+..-.. .+...... .....++..++|+++
T Consensus 1 M~Ik~VaViGaG~MG~gIA~~~a~~G-~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 79 (283)
T PRK07660 1 MGVQKIVVIGAGQMGSGIAQVCAMAG-YDVKVQDLKQEQLDRGLAIITKNLARQVEKGRMKEEEKEATLNRLTVTLDLDC 79 (283)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHH
T ss_conf 99788999896989999999999669-81899979889999999999999999987058998999999835877689899
Q ss_pred HCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHH-----
Q ss_conf 378978999556666765574678998899999999765412667408871484207899998844998656110-----
Q gi|254781048|r 69 IAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVG----- 143 (320)
Q Consensus 69 l~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG----- 143 (320)
+++||+|+-+. | +|..+-+++-.++.+++|.. .|++||-.-.....++..+.. |.|++|
T Consensus 80 ~~~aDlViEav--~------------E~l~iK~~lf~~l~~~~~~~-~IlaSNTS~l~i~~ia~~~~~-p~R~ig~Hffn 143 (283)
T PRK07660 80 VKEADLIIEAA--V------------EKMDIKKKIFANLDEIAPEH-AILATNTSSLPITEIAAVTKR-PEKVIGMHFMN 143 (283)
T ss_pred HCCCCEEEECC--C------------CCHHHHHHHHHHHHHHCCCC-CEEEECCCCCCCHHHHHHCCC-CHHCCCCCCCC
T ss_conf 76899999878--5------------75444299999999647997-189865888873255665178-24304666678
Q ss_pred -------------HCCCHHHHHHHHHHHHHCCCCC
Q ss_conf -------------0052568999999999719873
Q gi|254781048|r 144 -------------MAGILDSARFRYFLAQEFGVSV 165 (320)
Q Consensus 144 -------------~Gt~LDs~R~~~~ia~~l~v~~ 165 (320)
..|.-++...-..+.+.+|-.|
T Consensus 144 P~~~m~LVEIv~g~~T~~~~~~~~~~~~~~lgk~p 178 (283)
T PRK07660 144 PVPVMKLVEIIRGLATDDAVYETIEDITKKIGKVP 178 (283)
T ss_pred CCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 85657215456999997999999999998759427
No 52
>PRK09117 consensus
Probab=98.41 E-value=1.1e-06 Score=63.55 Aligned_cols=145 Identities=21% Similarity=0.277 Sum_probs=86.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHH----HHHC--------CCCCCCCEEEECCCHHHHCC
Q ss_conf 72899889813689999999579986999965788128988307----6205--------44688756852697488378
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDI----AESS--------PVEGFGAQLCGTSDYSDIAE 71 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl----~~~~--------~~~~~~~~v~~~~d~~~l~~ 71 (320)
+||+|||+|..|..+|..++..+. ++.|+|++++.++.-..-+ +... .......++..++|+++++|
T Consensus 3 ~~VaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~d~~a~~~ 81 (282)
T PRK09117 3 QTVGIIGAGTMGNGIAQACAVAGL-DVVMVDISDAAVQRGLATVAGSLDRLIKKEKLTEADKAAALARIKGSTDYDALKD 81 (282)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHCC
T ss_conf 779998977999999999996799-6899989889999999999999999997068877889999840656799899755
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHH---------
Q ss_conf 97899955666676557467899889999999976541266740887148420789999884499865611---------
Q gi|254781048|r 72 ADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVV--------- 142 (320)
Q Consensus 72 aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rVi--------- 142 (320)
||+|+-+.- +|..+-+++-.++.+++|... |++||-.-.....+++.+.- |.|++
T Consensus 82 aDlViEav~--------------E~l~iK~~lf~~l~~~~~~~~-IlaSNTS~l~i~~ia~~~~~-p~R~ig~HffnP~~ 145 (282)
T PRK09117 82 ADLVIEAAT--------------ENLDLKLKILKQLDALVGPDA-IIATNTSSISITKLAAATSR-PDRFIGMHFFNPVP 145 (282)
T ss_pred CCEEEECCC--------------CCHHHHHHHHHHHHHHCCCCC-EEEECCCCCCCHHHHHHCCC-HHHCCCCCCCCCCC
T ss_conf 999998785--------------888888999999986579981-89865876761778876498-46415545568866
Q ss_pred ---------HHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf ---------00052568999999999719873
Q gi|254781048|r 143 ---------GMAGILDSARFRYFLAQEFGVSV 165 (320)
Q Consensus 143 ---------G~Gt~LDs~R~~~~ia~~l~v~~ 165 (320)
|..|.-++...-..+++.+|..|
T Consensus 146 ~~~LVEiv~g~~Ts~~~~~~~~~~~~~lgk~p 177 (282)
T PRK09117 146 MMALVELIRGLQTSDATHAAVEALAKRLGKTP 177 (282)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 58448864999998999999999999739879
No 53
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.38 E-value=4.4e-06 Score=59.55 Aligned_cols=147 Identities=20% Similarity=0.225 Sum_probs=86.8
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHH---HHHHHHHHHC---------CCCCCCCEEEECCCHHHHC
Q ss_conf 872899889813689999999579986999965788128---9883076205---------4468875685269748837
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPR---GKALDIAESS---------PVEGFGAQLCGTSDYSDIA 70 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~---g~~~Dl~~~~---------~~~~~~~~v~~~~d~~~l~ 70 (320)
-+||+|||+|..|+-+|+.++..++ +++|+|++++.+. ..+.++-+.. ........+..+.+|++++
T Consensus 313 i~~v~ViGaG~MG~GIA~~~a~aG~-~V~l~D~~~e~l~~g~~~~~~~~~~~v~~g~~~~~~~~~~l~ri~~~~~~~~l~ 391 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMNEAAKLLNKQVERGRIDGLKMAGVLSTITPTLDYAGFK 391 (715)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHC
T ss_conf 6279997877107999999995799-579997899999999999999999998648998799999995687415402433
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHH-------
Q ss_conf 8978999556666765574678998899999999765412667408871484207899998844998656110-------
Q gi|254781048|r 71 EADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVG------- 143 (320)
Q Consensus 71 ~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG------- 143 (320)
+||+||-+.-. |..+-+++-.++.++++.. .|++||-.-+-...+.+.+.-| +|++|
T Consensus 392 ~~DlVIEAV~E--------------~l~~K~~vf~~l~~~~~~~-aIlAsNTSsl~i~~lA~~~~~P-er~iG~HFfnP~ 455 (715)
T PRK11730 392 DVDVVVEAVVE--------------NPKVKAAVLAEVEQKVRED-TILASNTSTISISLLAKALKRP-ENFCGMHFFNPV 455 (715)
T ss_pred CCCEEEEECCC--------------CHHHHHHHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHCCCC-CCEEEEEECCCC
T ss_conf 58889985436--------------5889999999998655875-3885157657789999751682-115652214884
Q ss_pred -----------HCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf -----------00525689999999997198733
Q gi|254781048|r 144 -----------MAGILDSARFRYFLAQEFGVSVE 166 (320)
Q Consensus 144 -----------~Gt~LDs~R~~~~ia~~l~v~~~ 166 (320)
..|.-++.-.-..+++.+|..|=
T Consensus 456 ~~m~LVEVv~g~~Ts~~t~~~~~~~~~~lgK~pV 489 (715)
T PRK11730 456 HRMPLVEVIRGEKTSDETIATVVAYASKMGKTPI 489 (715)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 4164488816899999999999999998198238
No 54
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.35 E-value=2.8e-06 Score=60.87 Aligned_cols=106 Identities=23% Similarity=0.242 Sum_probs=65.8
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHH----HCCC--------CCCCCEEEECCCHH-HHC
Q ss_conf 7289988981368999999957998699996578812898830762----0544--------68875685269748-837
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAE----SSPV--------EGFGAQLCGTSDYS-DIA 70 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~----~~~~--------~~~~~~v~~~~d~~-~l~ 70 (320)
+||+|||+|-+|...|..++..+ .++.|+|++++..+.-...+.. .... .....++..++|++ +++
T Consensus 3 ~~VaViGaG~mG~giA~~~a~~G-~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~g~~~~~~~~~~~~ri~~~~~l~~al~ 81 (308)
T PRK06129 3 GSIAIVGAGLIGRAWAIVFARAG-HRVRLWDADPAALAAAPAYIAGRLEDLAAFDLLDGESPDAVLARIRATDSLADAVA 81 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEECCCHHHHHC
T ss_conf 87999777899999999998589-93899989889999999999999999997699987659999835072288899847
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHH
Q ss_conf 8978999556666765574678998899999999765412667408871484207
Q gi|254781048|r 71 EADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDA 125 (320)
Q Consensus 71 ~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv 125 (320)
|||+|+-+.- +|.++-+++-.++.++++.. .|++||-.-+
T Consensus 82 ~adlViEav~--------------E~l~iK~~lf~~le~~~~~~-~IlaSnTSsl 121 (308)
T PRK06129 82 DADYVQESAP--------------ENLELKRALFAELDALAPPH-AILASSTSAL 121 (308)
T ss_pred CCCEEEECCC--------------CCHHHHHHHHHHHHHHCCCC-EEEEECCCCC
T ss_conf 4999999980--------------77999999999999656985-5898455538
No 55
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.32 E-value=4.4e-06 Score=59.56 Aligned_cols=146 Identities=22% Similarity=0.263 Sum_probs=89.2
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHH---HHHHH-HHHCC--------CCCCCCEEEECCCHHH
Q ss_conf 998728998898136899999995799869999657881289---88307-62054--------4688756852697488
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRG---KALDI-AESSP--------VEGFGAQLCGTSDYSD 68 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g---~~~Dl-~~~~~--------~~~~~~~v~~~~d~~~ 68 (320)
|.-+||+|||+|..|+-+|+.++. .--++.|+|++++.++. ..... +.... ....-..+..+.+|.+
T Consensus 1 ~~i~kv~ViGaG~MG~gIA~~~A~-~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~ 79 (307)
T COG1250 1 MEIKKVAVIGAGVMGAGIAAVFAL-AGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAA 79 (307)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHH
T ss_conf 974079997246020999999973-4995699958989999999999999998886278774559999751525576656
Q ss_pred HCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHH---
Q ss_conf 3789789995566667655746789988999999997654126-674088714842078999988449986561100---
Q gi|254781048|r 69 IAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYA-PNSFVICITNPLDAMVWALQKFSGLPSHMVVGM--- 144 (320)
Q Consensus 69 l~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~--- 144 (320)
++|||+||-+. .+|..+-+++-..+.+++ |++ |++||-.-+.-..+++.+.. |+|++|+
T Consensus 80 l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~a--IlASNTSsl~it~ia~~~~r-per~iG~HFf 142 (307)
T COG1250 80 LKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDA--ILASNTSSLSITELAEALKR-PERFIGLHFF 142 (307)
T ss_pred HCCCCEEEEEC--------------CCCHHHHHHHHHHHHHHCCCCC--EEEECCCCCCHHHHHHHHCC-CHHEEEEECC
T ss_conf 63088788853--------------0159999999999886559885--78622677878999987379-3237987526
Q ss_pred ---------------CCCHHHHHHHHHHHHHCCCC
Q ss_conf ---------------05256899999999971987
Q gi|254781048|r 145 ---------------AGILDSARFRYFLAQEFGVS 164 (320)
Q Consensus 145 ---------------Gt~LDs~R~~~~ia~~l~v~ 164 (320)
-|.=++...-..++++++-.
T Consensus 143 NP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~ 177 (307)
T COG1250 143 NPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKT 177 (307)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 98771105888168878999999999999985998
No 56
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.30 E-value=4.7e-06 Score=59.37 Aligned_cols=145 Identities=21% Similarity=0.293 Sum_probs=80.6
Q ss_pred CCEEEEECCCCHHHHHHHHHHH-CCCCEEEEEECCCCCHH-H--HHHHHHHHC---------CCCCCCCEEEECCCHHHH
Q ss_conf 8728998898136899999995-79986999965788128-9--883076205---------446887568526974883
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVL-KKLGDVVLLDIVDGMPR-G--KALDIAESS---------PVEGFGAQLCGTSDYSDI 69 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~-~~l~ei~L~D~~~~~~~-g--~~~Dl~~~~---------~~~~~~~~v~~~~d~~~l 69 (320)
-+||+|||+|..|+-+|+..+. .++ +++|+|++++.+. | ...++-+.. ........+..+.||+++
T Consensus 309 i~kv~ViGaG~MG~gIA~~~a~~aG~-~V~l~D~~~e~l~~~~~~i~~~l~~~v~~g~~~~~~~~~~l~~i~~~~~~~~~ 387 (706)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHMTPAERDKQMALISGTTDYRGF 387 (706)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEEECCHHHH
T ss_conf 76799986473238999999998698-79999799999999999889999999861899989999986224100441231
Q ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCHHHHHHHHHHCCCCHHHHHH-----
Q ss_conf 789789995566667655746789988999999997654126-67408871484207899998844998656110-----
Q gi|254781048|r 70 AEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYA-PNSFVICITNPLDAMVWALQKFSGLPSHMVVG----- 143 (320)
Q Consensus 70 ~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG----- 143 (320)
+|||+||-+.- + |..+-+++-.++.+++ |++ |++||-.-+-...+.+.+..| +|++|
T Consensus 388 ~~~DlVIEAv~----------E----~~~~K~~v~~~le~~~~~~a--IlAtNTSsl~i~~la~~~~rP-~r~iG~HFfn 450 (706)
T PRK11154 388 KHADLVIEAVF----------E----DLALKQQMVADVEQNCAEHT--IFASNTSSLPIGQIAAAAARP-EQVIGLHYFS 450 (706)
T ss_pred CCCCEEEEECC----------C----CHHHHHHHHHHHHHHCCCCC--EEEECCCCCCHHHHHHHCCCC-CEEEEEEECC
T ss_conf 56887999714----------5----28889999999996479885--895067677689999864784-1045544257
Q ss_pred -------------HCCCHHHHHHHHHHHHHCCCCC
Q ss_conf -------------0052568999999999719873
Q gi|254781048|r 144 -------------MAGILDSARFRYFLAQEFGVSV 165 (320)
Q Consensus 144 -------------~Gt~LDs~R~~~~ia~~l~v~~ 165 (320)
..|.=++.-.-..+++.++..|
T Consensus 451 P~~~m~LVEVi~g~~Ts~et~~~~~~~~~~lgK~p 485 (706)
T PRK11154 451 PVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTP 485 (706)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 74426427994378983899999999999759878
No 57
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.29 E-value=1.9e-06 Score=61.96 Aligned_cols=145 Identities=19% Similarity=0.213 Sum_probs=82.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHH----HHCCC--------CCCCCEEEECCCHH-HHC
Q ss_conf 728998898136899999995799869999657881289883076----20544--------68875685269748-837
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIA----ESSPV--------EGFGAQLCGTSDYS-DIA 70 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~----~~~~~--------~~~~~~v~~~~d~~-~l~ 70 (320)
+||+|||||..|..+|+.++..+ .++.|+|++++.+..-..-++ ..... .....++..+.|++ +++
T Consensus 3 kkV~ViGaG~MG~~IA~~~a~~G-~~V~l~D~~~e~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dl~~a~~ 81 (289)
T PRK09260 3 EKIVVVGAGVMGRGIAYVFASSG-FQTTLVDISQEQLASAQQEIESILEDGVALGKVTEAAAQAALARLSYSLDLKEAVA 81 (289)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHC
T ss_conf 76999796887899999999689-98899979989999999999999999987179998999999955876688899847
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHH-------
Q ss_conf 8978999556666765574678998899999999765412667408871484207899998844998656110-------
Q gi|254781048|r 71 EADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVG------- 143 (320)
Q Consensus 71 ~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG------- 143 (320)
|||+|+-+.- +|.++-+++-.++.+++|.. .|++||-.-.....+++.+.- |.|++|
T Consensus 82 ~aDlViEav~--------------E~l~iK~~v~~~l~~~~~~~-~IlaSNTSsl~is~ia~~~~~-p~R~ig~HffnP~ 145 (289)
T PRK09260 82 GADLLIEAVP--------------EKLEIKQAVFETADAHAPAE-ALIATNTSTLSPTEIASATKR-PERVIGMHFFNPV 145 (289)
T ss_pred CCCEEEECCC--------------CCHHHCHHHHHHHHHCCCCC-CEEEECCCCCCCHHHHHHCCC-HHHEEEECCCCCH
T ss_conf 6999998886--------------86323689999986068998-089855888771145541598-4662641247743
Q ss_pred -----------HCCCHHHHHHHHHHHHHCCCCC
Q ss_conf -----------0052568999999999719873
Q gi|254781048|r 144 -----------MAGILDSARFRYFLAQEFGVSV 165 (320)
Q Consensus 144 -----------~Gt~LDs~R~~~~ia~~l~v~~ 165 (320)
..|.-++.-.-..+++.+|-.|
T Consensus 146 ~~~~lVEvv~g~~Ts~e~i~~~~~~~~~lgk~p 178 (289)
T PRK09260 146 HKMKLVELVRGLETSDETVAVCREVAEQLGKET 178 (289)
T ss_pred HHHEEEEECCCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 221235645899999999999999999749842
No 58
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=98.27 E-value=2.7e-05 Score=54.49 Aligned_cols=147 Identities=24% Similarity=0.184 Sum_probs=81.3
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH--------HHHHHCCCCCCCCEEEECCCH-HHHCCCCEE
Q ss_conf 28998898136899999995799869999657881289883--------076205446887568526974-883789789
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKAL--------DIAESSPVEGFGAQLCGTSDY-SDIAEADVC 75 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~--------Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDiv 75 (320)
||+|||.|+||.++|..++..+. +++-+|+++.+.+.... ++++-... ....+...++++ +++++||++
T Consensus 2 kI~ViGlGyVGl~~a~~la~~G~-~V~g~D~d~~~v~~ln~g~~p~~E~~l~~~l~~-~~~~~~~~~~~~~~~i~~~d~i 79 (185)
T pfam03721 2 RIAVIGLGYVGLPTAVCLAEIGH-DVVGVDINQSKIDKLNNGKIPIYEPGLEELLKA-NVSGRLRFTTDVAEAIKEADVI 79 (185)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHH-HHCCCEEEECCHHHHHHHCCEE
T ss_conf 79998978748999999994899-399997998999998626897467588999987-3408969987879988449899
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE--CCCCHHHH----HHHHHHCCCCHHHHHHHCCCHH
Q ss_conf 99556666765574678998899999999765412667408871--48420789----9998844998656110005256
Q gi|254781048|r 76 IVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICI--TNPLDAMV----WALQKFSGLPSHMVVGMAGILD 149 (320)
Q Consensus 76 Vitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivv--tNPvDv~~----~~~~~~sg~~~~rViG~Gt~LD 149 (320)
+++.+.|...+.+ -+...+.+....+.++...+.++++ |=|.-..- .+..+.++.. .+-|..+-.-+
T Consensus 80 ~I~VpTP~~~~~~------~d~s~l~~~~~~i~~~l~~~~liii~STVppGtt~~~~~~l~~~~~~~~-~~d~~l~~~PE 152 (185)
T pfam03721 80 FIAVPTPSKKGGA------PDLTYVESAARTIGPVLKKGKVVVVKSTVPPGTTEEVVKPILEKRSGKK-AVDFNVASNPE 152 (185)
T ss_pred EEECCCCCCCCCC------CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCC-CCCEEEEECHH
T ss_conf 9973687655767------6635999999999744679989999189998868999999999726677-87448987833
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999997
Q gi|254781048|r 150 SARFRYFLAQE 160 (320)
Q Consensus 150 s~R~~~~ia~~ 160 (320)
-.|.-..+.+.
T Consensus 153 rl~~G~a~~d~ 163 (185)
T pfam03721 153 FLREGNAIHDL 163 (185)
T ss_pred HCCCCCHHHHC
T ss_conf 23664223331
No 59
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.24 E-value=2.3e-05 Score=54.98 Aligned_cols=117 Identities=21% Similarity=0.207 Sum_probs=68.5
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH--------HHHHCCCCCCCCEEEECCCHHHHCCC
Q ss_conf 9987289988981368999999957998699996578812898830--------76205446887568526974883789
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALD--------IAESSPVEGFGAQLCGTSDYSDIAEA 72 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~D--------l~~~~~~~~~~~~v~~~~d~~~l~~a 72 (320)
|.-.||+|||+|+||-++|..++..+. +++-+|+++++.+....- |+......-.......+++ ..+|
T Consensus 1 m~~kkI~ViGlGYVGL~~a~~lA~~G~-~Vig~D~d~~kv~~l~~g~~p~~Ep~l~~ll~~~~~~~~l~~t~~---~~~a 76 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINRGEIHIVEPDLDMVVKAAVEGGYLRATTT---PVPA 76 (415)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEECC---HHHC
T ss_conf 998879998868778999999996889-489998999999999786899889898999999986598365257---4678
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE--CCCCHHHH
Q ss_conf 78999556666765574678998899999999765412667408871--48420789
Q gi|254781048|r 73 DVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICI--TNPLDAMV 127 (320)
Q Consensus 73 DivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivv--tNPvDv~~ 127 (320)
|+++|+.+.|.+.+.+ . +...+.+..+.+.++..++-++++ |=|.-+.-
T Consensus 77 d~iiI~V~TP~~~~~~-~-----Dls~i~~a~~~I~~~l~~~~lVIi~STVppGTt~ 127 (415)
T PRK11064 77 DAFLIAVPTPFKGDHE-P-----DLSYVEAAAKSIAPVLKKGDLVILESTSPVGATE 127 (415)
T ss_pred CEEEEECCCCCCCCCC-C-----CCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHH
T ss_conf 9999988999789997-2-----0201888999999752688679963789997199
No 60
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.23 E-value=2.8e-05 Score=54.36 Aligned_cols=122 Identities=23% Similarity=0.141 Sum_probs=72.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHH---HC-----CCCCCCCEEEECCCH-HHHCCCCE
Q ss_conf 7289988981368999999957998699996578812898830762---05-----446887568526974-88378978
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAE---SS-----PVEGFGAQLCGTSDY-SDIAEADV 74 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~---~~-----~~~~~~~~v~~~~d~-~~l~~aDi 74 (320)
+||+|||+|-+|+..|...+..+. ++.++|.+++..+....-+.. .. ...+...++..+++. ++++|||+
T Consensus 3 kkVAVIGAGvMGsGwAa~FA~aG~-~V~L~Dp~peA~~ki~~~l~~a~~al~~L~~~~l~~~grL~~~~sL~eAV~dADl 81 (489)
T PRK07531 3 MKAACIGGGVIGGGWAARFLLNGW-DVAVFDPHPEAERIIGEVLANARRALPGLTDAPLPPEGRLSFCASLAEAVAGADW 81 (489)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHCCCCE
T ss_conf 679998718868999999995799-6999948878999999999999998775320355646776863889999747999
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 99955666676557467899889999999976541266740887148420789999884499865611
Q gi|254781048|r 75 CIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVV 142 (320)
Q Consensus 75 vVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rVi 142 (320)
|+-++ | +|.++-+++-..+.+++|.. .|+.||-..+....+++.... |+|++
T Consensus 82 VqEaV--P------------E~LdIKq~vf~eLd~~~~~~-aIiASsTSgl~~S~l~~~~~~-peR~i 133 (489)
T PRK07531 82 IQESV--P------------ERLDLKHKVLAEIEAAARPD-ALIGSSTSGFKPSELQEGMTH-PERIF 133 (489)
T ss_pred EEECC--C------------CCHHHHHHHHHHHHHHCCCC-CEEEECCCCCCHHHHHHHCCC-CCEEE
T ss_conf 99878--5------------66999999999999767998-389853665889999865589-55068
No 61
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=98.22 E-value=3e-05 Score=54.16 Aligned_cols=101 Identities=21% Similarity=0.322 Sum_probs=65.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHC--CCCCCCCEEEECCCHHH-HCCCCEEEEECC
Q ss_conf 728998898136899999995799869999657881289883076205--44688756852697488-378978999556
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESS--PVEGFGAQLCGTSDYSD-IAEADVCIVTAG 80 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~--~~~~~~~~v~~~~d~~~-l~~aDivVitag 80 (320)
.||+|||+|..|.++|..+..++ -++.+++++++.++.....-.+.. +-..+...+..+.|+++ +++||++|++.
T Consensus 1 kKI~IiGaG~wGtAla~~la~n~-~~V~l~~r~~~~~~~i~~~~~n~~~lp~~~l~~~i~~~~dl~~a~~~adiIiiav- 78 (159)
T pfam01210 1 KKIAVLGAGSWGTALAKVLARNG-HEVRLWGRDEELIEEINTTRENVKYLPGIKLPDNLRATTDLEEAIKGADIIVLAV- 78 (159)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEEECCHHHHHHHHCCCCCHHCCCCCCCCCEEECCCHHHHHHCCCEEEEEC-
T ss_conf 98999996999999999999879-9899999043666778866978210478645553054288999983798999917-
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEECC
Q ss_conf 66676557467899889999999976541266-740887148
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAP-NSFVICITN 121 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p-~~i~ivvtN 121 (320)
|. .-++++.++++.+-+ +..++.++.
T Consensus 79 -ps--------------~~~~~~~~~i~~~~~~~~~iv~~sK 105 (159)
T pfam01210 79 -PS--------------QALREVLKQLKGLLSPGAILVSLTK 105 (159)
T ss_pred -CH--------------HHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf -48--------------8999999999865576556888751
No 62
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.03 E-value=0.00035 Score=47.23 Aligned_cols=148 Identities=22% Similarity=0.183 Sum_probs=87.2
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH----HHHCCCCEEEEE
Q ss_conf 8728998898136899999995799869999657881289883076205446887568526974----883789789995
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY----SDIAEADVCIVT 78 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~----~~l~~aDivVit 78 (320)
..||.|||+|+||+.+|+.+++++-.|+.+-|++.+++........- .......-..|. +.+++.|+||.+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-----~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-----KVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCC-----CCEEEEECCCCHHHHHHHHHCCCEEEEE
T ss_conf 97289989866679999999857896299984888899998753346-----6316994256758899987257789992
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHH---HHHHHHHCCCCHHHHH--HHCCCHHHHHH
Q ss_conf 566667655746789988999999997654126674088714842078---9999884499865611--00052568999
Q gi|254781048|r 79 AGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAM---VWALQKFSGLPSHMVV--GMAGILDSARF 153 (320)
Q Consensus 79 ag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~---~~~~~~~sg~~~~rVi--G~Gt~LDs~R~ 153 (320)
+..+. +. .+++.+.+.+ --++-.|+=.+.. -..+.+. |. .=+. |+.--+++.-.
T Consensus 76 ~p~~~------------~~----~i~ka~i~~g--v~yvDts~~~~~~~~~~~~a~~A-gi--t~v~~~G~dPGi~nv~a 134 (389)
T COG1748 76 APPFV------------DL----TILKACIKTG--VDYVDTSYYEEPPWKLDEEAKKA-GI--TAVLGCGFDPGITNVLA 134 (389)
T ss_pred CCCHH------------HH----HHHHHHHHHC--CCEEECCCCCCHHHHHHHHHHHC-CC--EEECCCCCCCCHHHHHH
T ss_conf 87054------------29----9999999859--98897546775065654898874-90--79716676864579999
Q ss_pred HHHHHHHCCCCCCCCEEEEE--CCCC
Q ss_conf 99999971987335505675--0788
Q gi|254781048|r 154 RYFLAQEFGVSVESVTALVL--GSHG 177 (320)
Q Consensus 154 ~~~ia~~l~v~~~~V~~~Vi--GeHG 177 (320)
.++..+... ...+++.|+. |+||
T Consensus 135 ~~a~~~~~~-~i~si~iy~g~~g~~~ 159 (389)
T COG1748 135 AYAAKELFD-EIESIDIYVGGLGEHG 159 (389)
T ss_pred HHHHHHHHC-CCCEEEEEEECCCCCC
T ss_conf 999998616-5648999982589898
No 63
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.00 E-value=3.1e-05 Score=54.09 Aligned_cols=106 Identities=24% Similarity=0.232 Sum_probs=60.8
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHH---CC---CCC--CCCEEEECCCHH-HHCCCC
Q ss_conf 872899889813689999999579986999965788128988307620---54---468--875685269748-837897
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAES---SP---VEG--FGAQLCGTSDYS-DIAEAD 73 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~---~~---~~~--~~~~v~~~~d~~-~l~~aD 73 (320)
-+||+|||+|-+|+..|...+..+. ++.++|.+++..+....-+... .. ..+ ...++..+++.+ +++|||
T Consensus 7 Ik~VaVIGaG~MG~giAa~~a~~G~-~V~l~D~~~~a~~~~~~~i~~~~~~l~~~~~~~~~~~~~l~~~~~l~~av~~aD 85 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADAD 85 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHCCCC
T ss_conf 8879998887888999999994798-599996988899999999999999998668996316965014688899863599
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCH
Q ss_conf 899955666676557467899889999999976541266740887148420
Q gi|254781048|r 74 VCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLD 124 (320)
Q Consensus 74 ivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvD 124 (320)
+|+-++ | +|.++-+++-.++.+++|.. .|++||-.-
T Consensus 86 ~ViEav--p------------E~l~lK~~lf~~ld~~~~~~-aIiASnTS~ 121 (321)
T PRK07066 86 FIQESA--P------------EREALKLELHERISRAAKPD-AIIASSTSG 121 (321)
T ss_pred EEEECC--E------------ECHHHHHHHHHHHHHHCCCC-CEEEECCCC
T ss_conf 899877--6------------65999999999999767988-678525765
No 64
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.99 E-value=6.7e-05 Score=51.91 Aligned_cols=123 Identities=18% Similarity=0.235 Sum_probs=74.5
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH-HHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCCC
Q ss_conf 289988981368999999957998699996578812898830-7620544688756852697488378978999556666
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALD-IAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIPR 83 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~D-l~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~~ 83 (320)
||+|+|+|.+|+.++..+...+ .++.|+++.+...+....+ +.-......+...+....+.++...+|++++|...+.
T Consensus 2 kI~IiGaGaiG~~~a~~L~~ag-~~V~li~r~~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs~~ 80 (307)
T PRK06522 2 KIAILGAGAIGGLFGARLAQAG-HDVTLVARGATLAEALNENGLRLLEGGEVFVVPVPAADDPAELGPQDLVILAVKAYQ 80 (307)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHCCEEEECCCCEEECCCCCCCCHHHCCCCCEEEEECCCCC
T ss_conf 8999991499999999998489-988999788889999996893995289769805503488667489888999806668
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCC
Q ss_conf 765574678998899999999765412667408871484207899998844998656110005
Q gi|254781048|r 84 KPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAG 146 (320)
Q Consensus 84 ~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt 146 (320)
. ...++.+.+.+ .+++.++.+-|=++..-.+ .+. ||+++|++--+
T Consensus 81 ~------------~~a~~~l~~~l---~~~t~iv~lqNG~g~~~~l-~~~--~~~~~v~~gv~ 125 (307)
T PRK06522 81 L------------PAALPDLAPLL---GPETVVLFLQNGVGHEEVL-AAY--IGPERVLGGVV 125 (307)
T ss_pred H------------HHHHHHHHHHC---CCCCEEEEEECCCCHHHHH-HHH--CCCCCEEEEEE
T ss_conf 9------------99999998645---9994899961686779999-865--37253999998
No 65
>pfam03807 F420_oxidored NADP oxidoreductase coenzyme F420-dependent.
Probab=97.89 E-value=0.00012 Score=50.28 Aligned_cols=92 Identities=25% Similarity=0.273 Sum_probs=57.7
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCCCC
Q ss_conf 28998898136899999995799869999657881289883076205446887568526974883789789995566667
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIPRK 84 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~~~ 84 (320)
||+|||+|++|.+++..+...+...+...++++++++..+..+. ......+..+.+++||+|+++.-
T Consensus 1 KIg~IG~G~mg~ai~~~l~~~g~~~~~~~~r~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~DvIilavk---- 67 (93)
T pfam03807 1 KIGIIGAGNMGEALARGLAAAGHEVIIANSRNPEKAAALAEELG---------VGATAVSNEEAAEEADVVILAVK---- 67 (93)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHC---------CCCCCCCHHHHHHCCCEEEEEEC----
T ss_conf 98999700999999999997799612786487899999999819---------97645899999744998999979----
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 6557467899889999999976541266740887148
Q gi|254781048|r 85 PSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITN 121 (320)
Q Consensus 85 ~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtN 121 (320)
|. .++++.+.++..-++-+++-++|
T Consensus 68 p~------------~~~~vl~~i~~~~~~k~vISv~a 92 (93)
T pfam03807 68 PE------------DAPEVLAELADLLKGKLVISITN 92 (93)
T ss_pred HH------------HHHHHHHHHHHHCCCCEEEEECC
T ss_conf 99------------99999998762508999998099
No 66
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=97.83 E-value=8.6e-05 Score=51.19 Aligned_cols=118 Identities=28% Similarity=0.384 Sum_probs=72.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC--CCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCC
Q ss_conf 7289988981368999999957998699996578--81289883076205446887568526974883789789995566
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD--GMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGI 81 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~--~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~ 81 (320)
.||.|+|+|.+|+.+++.+...+ .++.++-+.+ ++.+-.-+.+.+... .+........+.+.+..+|+++++...
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~~GL~i~~~~~--~~~~~~~~~~~~~~~~~~Dlviv~vKa 77 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSRRLEALKKKGLRIEDEGG--NFTTPVVAATDAEALGPADLVIVTVKA 77 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCEEEEECHHHHHHHHHCCEEEEECCC--CCCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 95999878789999999998589-957998108999999878979981688--522443235673336788889998042
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCHHHHHHHHHHCCCCHHHHHH
Q ss_conf 667655746789988999999997654126-67408871484207899998844998656110
Q gi|254781048|r 82 PRKPSMSRDDLLADNLKAIEKVGAGIRKYA-PNSFVICITNPLDAMVWALQKFSGLPSHMVVG 143 (320)
Q Consensus 82 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG 143 (320)
... .+..+.+.++. |+++++..-|=+...- ...+. +|+++|++
T Consensus 78 ~q~----------------~~al~~l~~~~~~~t~vl~lqNG~g~~e-~l~~~--~~~~~il~ 121 (307)
T COG1893 78 YQL----------------EEALPSLAPLLGPNTVVLFLQNGLGHEE-ELRKI--LPKETVLG 121 (307)
T ss_pred CCH----------------HHHHHHHHHHCCCCCEEEEEECCCCHHH-HHHHH--CCCCEEEE
T ss_conf 238----------------9999998730799848999708972699-99873--88342898
No 67
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.82 E-value=0.0003 Score=47.66 Aligned_cols=72 Identities=22% Similarity=0.320 Sum_probs=47.0
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHH---CCC----CCCCCEEEECCCHH-HHCCCC
Q ss_conf 9872899889813689999999579986999965788128988307620---544----68875685269748-837897
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAES---SPV----EGFGAQLCGTSDYS-DIAEAD 73 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~---~~~----~~~~~~v~~~~d~~-~l~~aD 73 (320)
|+.||+|||+|.-|.++|..+..++ +.+++-++++. +.+++.. ..+ ...+..+..+.|.+ .+.++|
T Consensus 5 k~~KI~ViGaGawGTALA~~la~n~--~~v~w~r~~~~----~~~In~~~~N~kyL~~~i~Lp~~i~~t~dl~~a~~~ad 78 (340)
T PRK12439 5 REPKVVVLGGGSWGTTVASICARRG--PTLQWVRSEET----AKDINDNHRNSRYLGNDVVLSDTLRATTDFTEAANCAD 78 (340)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CEEEEECCHHH----HHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHCCC
T ss_conf 8992899896999999999999589--98999689999----99999828887689987558987289789999982699
Q ss_pred EEEEEC
Q ss_conf 899955
Q gi|254781048|r 74 VCIVTA 79 (320)
Q Consensus 74 ivVita 79 (320)
++|++.
T Consensus 79 iii~av 84 (340)
T PRK12439 79 VVVMGV 84 (340)
T ss_pred EEEEEC
T ss_conf 899936
No 68
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.81 E-value=0.00013 Score=50.03 Aligned_cols=121 Identities=19% Similarity=0.265 Sum_probs=72.6
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHH---HHHHHHHHCCCC-CC-CCEEEECCCHHHHCCCCEEEEE
Q ss_conf 728998898136899999995799869999657881289---883076205446-88-7568526974883789789995
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRG---KALDIAESSPVE-GF-GAQLCGTSDYSDIAEADVCIVT 78 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g---~~~Dl~~~~~~~-~~-~~~v~~~~d~~~l~~aDivVit 78 (320)
-||.|+|+|.||+.++..+...+ .++.|+++ .+..+. +-+.+.+..... .. ...+....+++++..+|+++++
T Consensus 3 mkI~IiGaGAvG~~~a~~L~~aG-~~V~lv~r-~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~ 80 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAG-ADVTLIGR-ARIGDEIRAHGLRLTDYRGRDVRVPPDAIAFSTDPAALATADLVLVT 80 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCEEEEEC-HHHHHHHHHCCCEEECCCCCEEEECCCEEEECCCHHHCCCCCEEEEE
T ss_conf 77999896799999999998589-98799956-78999999679099638997689636615614886565899989997
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 566667655746789988999999997654126674088714842078999988449986561100
Q gi|254781048|r 79 AGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGM 144 (320)
Q Consensus 79 ag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~ 144 (320)
...+.. ...++.+.+.+ .|++.++..-|=++.--.+ .+ .||..||++-
T Consensus 81 vKa~~~------------~~a~~~l~~~l---~~~t~il~lQNGlg~~e~l-~~--~~~~~~v~~g 128 (341)
T PRK08229 81 VKSAAT------------ADAAAALAGHA---RPGAVVVSFQNGVRNADVL-RA--ALPGATVLAG 128 (341)
T ss_pred ECCCCH------------HHHHHHHHHHC---CCCCEEEEEECCCCCHHHH-HH--HCCCCCEEEE
T ss_conf 075788------------99999998643---8996899950477719999-98--6899829999
No 69
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.80 E-value=0.00018 Score=49.06 Aligned_cols=121 Identities=22% Similarity=0.248 Sum_probs=71.2
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCC----CCC-CEEEECCCHHHHCCCCEEE
Q ss_conf 98728998898136899999995799869999657881289883076205446----887-5685269748837897899
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVE----GFG-AQLCGTSDYSDIAEADVCI 76 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~----~~~-~~v~~~~d~~~l~~aDivV 76 (320)
++.||+|+|+|.+|+.++..+...+ .++.|+.+.+ .+... ++..... .+. ..+....+.+++..+|+++
T Consensus 4 ~~~kI~IiGaGAiG~~~a~~L~~aG-~~V~li~r~~--~~ai~---~~Gl~i~~~~g~~~~~~~~~~~~~~~~~~~D~vi 77 (313)
T PRK06249 4 ETPRIAIIGTGAIGGFYGAMLARAG-FDVHFLLRSD--YEAVR---ENGLQVDSVHGDFHLPQVQAYRSAEDMPPCDWVL 77 (313)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCH--HHHHH---HCCEEEEECCCCEEECCCEEECCHHHCCCCCEEE
T ss_conf 9888999991499999999999669-9569996755--99998---6885999669828976840236977839965899
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCC
Q ss_conf 9556666765574678998899999999765412-6674088714842078999988449986561100052
Q gi|254781048|r 77 VTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKY-APNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGI 147 (320)
Q Consensus 77 itag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~-~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~ 147 (320)
++...... .+..+.++.. +|+++++..-|=++..-.+. + -||+++|+|.-+.
T Consensus 78 v~vKs~~~----------------~~~~~~l~~~~~~~t~il~lQNG~g~~~~l~-~--~~~~~~vl~gv~~ 130 (313)
T PRK06249 78 VGLKTTAN----------------ALLAPLIPQVAAPGAKVLLLQNGLGVEEQLR-P--LLPAEHLLGGLCF 130 (313)
T ss_pred EECCCCCH----------------HHHHHHHHHHCCCCCEEEEECCCCCHHHHHH-H--HCCCCEEEEEEEE
T ss_conf 95366778----------------9999987864489958999447666188887-5--3788838999999
No 70
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.79 E-value=0.0004 Score=46.85 Aligned_cols=121 Identities=24% Similarity=0.291 Sum_probs=72.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCC-CHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCC
Q ss_conf 72899889813689999999579986999965788-12898830762054468875685269748837897899955666
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDG-MPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIP 82 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~-~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~ 82 (320)
.+++|+|+|++|++++..+...+ -|+.+-.++.+ +.++-+..+ .+.++.....++.+.||+|+++.=.
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag-~eV~igs~r~~~~~~a~a~~l---------~~~i~~~~~~dA~~~aDVVvLAVP~- 70 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAG-HEVIIGSSRGPKALAAAAAAL---------GPLITGGSNEDAAALADVVVLAVPF- 70 (211)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHH---------CCCCCCCCHHHHHHCCCEEEEECCH-
T ss_conf 17999625718789999999679-739996478806788999864---------5653347768888439989995457-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHH---------------HHHHHHHHCCCCHHHHHHHCCC
Q ss_conf 6765574678998899999999765412667408871484207---------------8999988449986561100052
Q gi|254781048|r 83 RKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDA---------------MVWALQKFSGLPSHMVVGMAGI 147 (320)
Q Consensus 83 ~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv---------------~~~~~~~~sg~~~~rViG~Gt~ 147 (320)
.....+.+++...+. +-++|-+|||.+. -+..++++ +|..||...=.+
T Consensus 71 -----------~a~~~v~~~l~~~~~----~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~--lp~akVVkAFn~ 133 (211)
T COG2085 71 -----------EAIPDVLAELRDALG----GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKL--LPGAKVVKAFNT 133 (211)
T ss_pred -----------HHHHHHHHHHHHHHC----CEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--CCCCCHHHHHCC
T ss_conf -----------877769999998709----909996688754468830103688888599999997--798301465503
Q ss_pred HHHHH
Q ss_conf 56899
Q gi|254781048|r 148 LDSAR 152 (320)
Q Consensus 148 LDs~R 152 (320)
+.-.+
T Consensus 134 i~a~~ 138 (211)
T COG2085 134 IPAAV 138 (211)
T ss_pred CCHHH
T ss_conf 57877
No 71
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.74 E-value=0.00057 Score=45.85 Aligned_cols=114 Identities=25% Similarity=0.268 Sum_probs=66.6
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHC--CCCCCCCEEEECCCHHH-HCCCCEEEEECC
Q ss_conf 728998898136899999995799869999657881289883076205--44688756852697488-378978999556
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESS--PVEGFGAQLCGTSDYSD-IAEADVCIVTAG 80 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~--~~~~~~~~v~~~~d~~~-l~~aDivVitag 80 (320)
.||+|||+|.-|.++|..+..++ .++.|+.++++.++..-.+-.+.. +-..++.++..+.|.++ +.+||++|++.
T Consensus 2 mkI~ViGaGawGtAlA~~la~n~-~~V~lw~r~~~~~~~In~~~~n~~ylp~i~L~~nI~~t~dl~~~l~~ad~iiiav- 79 (325)
T PRK00094 2 MKIAVLGAGSWGTALAILLARNG-HDVVLWGRDPEHAAEINTDRENPRYLPGIKLPDNLRATSDLAEALADADLILVAV- 79 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHCCCEEEEEC-
T ss_conf 88999898999999999999789-9789998389999999964988656897858998389789999983798499945-
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEECCC-----CHHHHHHHHHHC
Q ss_conf 6667655746789988999999997654126-67408871484-----207899998844
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYA-PNSFVICITNP-----LDAMVWALQKFS 134 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~~i~ivvtNP-----vDv~~~~~~~~s 134 (320)
| .+-++++.+++.++- ++..++.+|-= -..+..++.+..
T Consensus 80 -P--------------s~~~~~~l~~i~~~i~~~~~li~~tKGle~~t~~~~seii~~~l 124 (325)
T PRK00094 80 -P--------------SHAFREVLKQLKPLLRPDAPIVWATKGIEAGTGKLLSEVAEEEL 124 (325)
T ss_pred -C--------------HHHHHHHHHHHHHHCCCCCEEEEEECCEECCCCCCHHHHHHHHC
T ss_conf -7--------------69999999999864689974999765562488751999999973
No 72
>pfam02719 Polysacc_synt_2 Polysaccharide biosynthesis protein. This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI).
Probab=97.71 E-value=0.0044 Score=40.09 Aligned_cols=218 Identities=17% Similarity=0.209 Sum_probs=111.2
Q ss_pred EEEEC-CCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEE--ECCCHHHH----C--CCCEEE
Q ss_conf 89988-981368999999957998699996578812898830762054468875685--26974883----7--897899
Q gi|254781048|r 6 IALIG-SGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLC--GTSDYSDI----A--EADVCI 76 (320)
Q Consensus 6 V~IIG-aG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~--~~~d~~~l----~--~aDivV 76 (320)
|-|.| ||.+|++++..++..+..+++++|+++........++....... ..+.. -..|++.+ + +.|+|+
T Consensus 1 ILVTGGaGFIGS~Lv~~Ll~~g~~~v~v~d~~~~~~~~~~~~l~~~~~~~--~~~~~~~DI~D~~~l~~~~~~~~~D~V~ 78 (280)
T pfam02719 1 VLVTGGGGSIGSELCRQILKFNPKKIILFSRDEFKLYEIEQELREEYNDP--KLRFFIGDVRDRERLERAMEEYGVDTVF 78 (280)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCC--CEEEEECCCCCHHHHHHHHHHCCCCEEE
T ss_conf 79974886799999999996899889999088742778999988626789--8389981168989999998754999999
Q ss_pred EECCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC----CCCHHHHHHHHHHCCCCHHHHHHHCCCHHH
Q ss_conf 9556666765--5746789988999999997654126674088714----842078999988449986561100052568
Q gi|254781048|r 77 VTAGIPRKPS--MSRDDLLADNLKAIEKVGAGIRKYAPNSFVICIT----NPLDAMVWALQKFSGLPSHMVVGMAGILDS 150 (320)
Q Consensus 77 itag~~~~~g--~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvt----NPvDv~~~~~~~~sg~~~~rViG~Gt~LDs 150 (320)
-.|+...-+. .+..+.++.|..=...+.+..++++-+-++..-| ||.+. |-+. |.. .
T Consensus 79 HlAA~~~V~~s~~~P~~~~~~Nv~gT~nlLe~a~~~~vk~~v~~STd~a~~P~s~--Yg~s--------K~~-------~ 141 (280)
T pfam02719 79 HAAALKHVPLVEYNPMEAIKTNVLGTENVAEAAIENGVEKFVLISTDKAVNPTNV--MGAT--------KRL-------A 141 (280)
T ss_pred ECHHHCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCC--CCCC--------HHH-------H
T ss_conf 8103116532766999999887277799998888539624551476644569984--5423--------777-------8
Q ss_pred HHHHHHHHHHCCCCCCCC----EEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCH-----HH
Q ss_conf 999999999719873355----056750788524651023544770155430015878767999984551015-----88
Q gi|254781048|r 151 ARFRYFLAQEFGVSVESV----TALVLGSHGDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGG-----AE 221 (320)
Q Consensus 151 ~R~~~~ia~~l~v~~~~V----~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v~~~g-----~~ 221 (320)
-++-..-++..+.+...+ ..-|.|..| +.+|.|-+.-..|+|+.=.-.....+.-..+++.+-+..+. .|
T Consensus 142 E~l~~~y~~~~~~~~~~~~~lR~fNVyGprg-sVIp~Fi~~~~~~~pi~I~dg~qtRdf~~V~D~v~~~l~a~~~~~~ge 220 (280)
T pfam02719 142 EKLFQAANRESGSGKTRFSAVRFGNVLGSRG-SVIPLFKKQIAEGGPVTVTHPDMTRFFMTIPEAVQLVLQAGAMGKGGE 220 (280)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEECCEECCCC-CCHHHHHHHHHCCCCEEECCCCCEEEEEEHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999997199985489875445028997-709999999985998656599843855879999999999997287786
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 8875157654322032323445545288
Q gi|254781048|r 222 IVGLLRSGSAYYAPASSAIAIAESYLKN 249 (320)
Q Consensus 222 ii~~~~kg~t~~~~a~a~~~ii~aIl~~ 249 (320)
|+.+ +. |-...+.++.+.|..+
T Consensus 221 ifni-g~-----g~~~sI~dLAk~i~~~ 242 (280)
T pfam02719 221 IFVL-DM-----GEPVKIVDLAKAMIGD 242 (280)
T ss_pred EEEC-CC-----CCCEEHHHHHHHHCCC
T ss_conf 7888-89-----9866999999975479
No 73
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.69 E-value=0.0024 Score=41.79 Aligned_cols=100 Identities=19% Similarity=0.274 Sum_probs=59.6
Q ss_pred EEEEECCCCHHHHHHHHHHHCCC-------CEEEEEECCCCCHHHH-HHHHHHH------CCCCCCCCEEEECCCHH-HH
Q ss_conf 28998898136899999995799-------8699996578812898-8307620------54468875685269748-83
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKL-------GDVVLLDIVDGMPRGK-ALDIAES------SPVEGFGAQLCGTSDYS-DI 69 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l-------~ei~L~D~~~~~~~g~-~~Dl~~~------~~~~~~~~~v~~~~d~~-~l 69 (320)
||+|||+|.-|.++|..+..++. .++.|+-++++..... +..++.. .+-..++..+..+.|.+ .+
T Consensus 1 KI~ViGaGawGTALA~~La~ng~~~~~~~~~~V~lw~r~~~~~~~~~~~~in~~~~N~~yLp~i~Lp~~i~~t~dl~~~~ 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHH
T ss_conf 98998779999999999997488654557863799972322100468999974496867798784898608966899998
Q ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEEC
Q ss_conf 789789995566667655746789988999999997654126-674088714
Q gi|254781048|r 70 AEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYA-PNSFVICIT 120 (320)
Q Consensus 70 ~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~~i~ivvt 120 (320)
++||+++++. |. +-++++.++++.+- ++.+++.+|
T Consensus 81 ~~ad~ii~av--Ps--------------~~~r~~~~~l~~~l~~~~~ii~~s 116 (342)
T TIGR03376 81 KGADILVFVI--PH--------------QFLEGICKQLKGHVKPNARAISCI 116 (342)
T ss_pred HCCCEEEEEC--CH--------------HHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 3698899966--86--------------999999999985458887389842
No 74
>KOG2666 consensus
Probab=97.69 E-value=0.0022 Score=42.09 Aligned_cols=155 Identities=21% Similarity=0.243 Sum_probs=92.7
Q ss_pred CEEEEECCCCHHH-HHHHHHHHCCCCEEEEEECCCCCHHHHHHH--------HHHHCCCCCCCCEEEECCCHH-HHCCCC
Q ss_conf 7289988981368-999999957998699996578812898830--------762054468875685269748-837897
Q gi|254781048|r 4 NKIALIGSGMIGG-TLAHLAVLKKLGDVVLLDIVDGMPRGKALD--------IAESSPVEGFGAQLCGTSDYS-DIAEAD 73 (320)
Q Consensus 4 ~KV~IIGaG~VG~-~~a~~~~~~~l~ei~L~D~~~~~~~g~~~D--------l~~~~~~~~~~~~v~~~~d~~-~l~~aD 73 (320)
.||..||||.||+ ++|-.++..+--++.++|++..+-.++--| |.+.. ......+.+.++|.+ +.+.||
T Consensus 2 ~KicCiGAGYVGGPT~aviAlkCP~i~vtvVD~s~~rInaWNSd~LPIYEPGLdevV-k~cRgkNLFFStdiek~i~EaD 80 (481)
T KOG2666 2 VKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVV-KQCRGKNLFFSTDIEKAIKEAD 80 (481)
T ss_pred CEEEEECCCCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHCCCCCCCCCCCCHHHHH-HHHCCCCEEEECCHHHHHHHCC
T ss_conf 359995677668830644310389548999866837765016888865687779999-9834875155156687765425
Q ss_pred EEEEECCCCCCC-C----C-CHHHHHHHHHHHHH---------------------HHHHHHHHCCCCCCEEEECCCCHH-
Q ss_conf 899955666676-5----5-74678998899999---------------------999765412667408871484207-
Q gi|254781048|r 74 VCIVTAGIPRKP-S----M-SRDDLLADNLKAIE---------------------KVGAGIRKYAPNSFVICITNPLDA- 125 (320)
Q Consensus 74 ivVitag~~~~~-g----~-~R~dll~~N~~i~~---------------------~i~~~i~~~~p~~i~ivvtNPvDv- 125 (320)
+|.+....|.|. | + ..+...+.-++.+. .+.+-+.+..|+-.+-+.|||-=.
T Consensus 81 lvFiSVNTPTKt~G~G~G~AaDL~Y~EsaaRmIa~~s~s~KIVvEKSTVPVkaAEsI~~Il~hn~~gi~fqiLSNPEFLA 160 (481)
T KOG2666 81 LVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPEFLA 160 (481)
T ss_pred EEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHH
T ss_conf 69999379742226887765421689999999998717981799625655047999999972689983358606847750
Q ss_pred ------------------------------HHHHHHHHCCCCHHHHHHHCCC---HHHHHHHHHHHHHC
Q ss_conf ------------------------------8999988449986561100052---56899999999971
Q gi|254781048|r 126 ------------------------------MVWALQKFSGLPSHMVVGMAGI---LDSARFRYFLAQEF 161 (320)
Q Consensus 126 ------------------------------~~~~~~~~sg~~~~rViG~Gt~---LDs~R~~~~ia~~l 161 (320)
+..++... .|++|++.+-|+ |--.-.+.|||++.
T Consensus 161 EGTAi~DL~npDRVLIGG~etpeG~~Av~~L~~vY~~W--vP~~~IitTN~WSsELSKLaANAFLAQRI 227 (481)
T KOG2666 161 EGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHW--VPREQIITTNTWSSELSKLAANAFLAQRI 227 (481)
T ss_pred CCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHH--CCHHHEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 64145541487738887877825789999999999851--86110554151178899998889999987
No 75
>PRK08507 prephenate dehydrogenase; Validated
Probab=97.67 E-value=0.00053 Score=46.05 Aligned_cols=88 Identities=25% Similarity=0.341 Sum_probs=56.5
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCC-EEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCCC
Q ss_conf 289988981368999999957998-6999965788128988307620544688756852697488378978999556666
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLG-DVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIPR 83 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~-ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~~ 83 (320)
||+|||.|.+|+++|..+...+.. ++.-+|++++. ...++++. . -. ...+++++++||+||++.-.
T Consensus 2 ~I~IiGlGLiGgSla~alk~~~~~~~V~g~d~~~~~-~~~A~~~g--~-----id---~~~~~~~i~~aDlVila~Pv-- 68 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKENKLISCVYGYDHNEEH-EKDALDLG--L-----VD---EIVEFEEIKECDVIFLAIPV-- 68 (275)
T ss_pred EEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCHHH-HHHHHHCC--C-----CC---CCCCHHHCCCCCEEEEECCH--
T ss_conf 899990087899999999950998679999599999-99999869--9-----86---10673123657989991769--
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 765574678998899999999765412667408871
Q gi|254781048|r 84 KPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICI 119 (320)
Q Consensus 84 ~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivv 119 (320)
.....+++++. ...|++++.=+
T Consensus 69 ----------~~~~~~l~~l~----~l~~~~iitDv 90 (275)
T PRK08507 69 ----------DAIIEILQKLL----DIKENTTIIDL 90 (275)
T ss_pred ----------HHHHHHHHHHH----HCCCCCEEEEC
T ss_conf ----------99999999986----04678889834
No 76
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.64 E-value=0.00053 Score=46.08 Aligned_cols=89 Identities=20% Similarity=0.257 Sum_probs=56.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCH-HHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCC
Q ss_conf 7289988981368999999957998699996578812-898830762054468875685269748837897899955666
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMP-RGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIP 82 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~-~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~ 82 (320)
=||+|||.|.+|+++|..+...+. +++-+|++++.+ ++..+.+-| ....+.+.+++||+||++.-.
T Consensus 2 mkI~IiGlGLIGgSla~al~~~~~-~V~g~d~~~~~~~~A~~~g~id-----------~~~~~~~~~~~aDliila~Pv- 68 (280)
T PRK07417 2 MNIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGLVD-----------EASTDLSLLKDCDLVILALPI- 68 (280)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCCC-----------EECCCHHHHCCCCEEEECCCH-
T ss_conf 789999318579999999996899-7999979999999999869975-----------202787460579989987974-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 6765574678998899999999765412667408871
Q gi|254781048|r 83 RKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICI 119 (320)
Q Consensus 83 ~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivv 119 (320)
....++++++.+.+. |++++.=+
T Consensus 69 -----------~~~~~~~~~~~~~l~---~~~iitDv 91 (280)
T PRK07417 69 -----------GLLLPPSEELIPALP---PEAIVTDV 91 (280)
T ss_pred -----------HHHHHHHHHHHHHCC---CCCEEEEC
T ss_conf -----------778999999986478---98489965
No 77
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=97.62 E-value=0.00038 Score=47.03 Aligned_cols=105 Identities=18% Similarity=0.203 Sum_probs=70.2
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCC-HHHHCCCCEEEEECC
Q ss_conf 9872899889813689999999579986999965788128988307620544688756852697-488378978999556
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSD-YSDIAEADVCIVTAG 80 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d-~~~l~~aDivVitag 80 (320)
+.+|+.|||+|.+|..++..+...+..++.+..++.++++..+..+. +.......-.+ ++.+.++|+||.+.+
T Consensus 11 ~~~~vlVIGaG~~~~~~~~~L~~~g~~~i~v~nRt~~ka~~la~~~~------~~~~~~~~~~~l~~~l~~~DivI~aT~ 84 (134)
T pfam01488 11 KGKKVLLIGAGEMARLAAKHLLSKGAKKITIANRTLEKAKELAEEFG------GEEVEALPLDELEELLAEADIVISATS 84 (134)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCC------CCCEEEEECHHHHHHHHHCCEEEEECC
T ss_conf 48989999960999999999997599889995475789999999849------972589851354413631999999259
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHH
Q ss_conf 666765574678998899999999765412667408871484207899
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVW 128 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~ 128 (320)
.|.. --++.++ + +....-+++=.+.|-|+=..
T Consensus 85 s~~~-ii~~~~~------------~---~~~~~~~iiDLavPrnvd~~ 116 (134)
T pfam01488 85 APTP-IITKEMV------------E---EALKGLLFVDIAVPRDIEPE 116 (134)
T ss_pred CCCC-EECHHHH------------H---HCCCCEEEEEECCCCCCCHH
T ss_conf 9973-6489999------------7---44398599983478886654
No 78
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.60 E-value=0.00064 Score=45.54 Aligned_cols=90 Identities=21% Similarity=0.382 Sum_probs=57.1
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCC-EEEEEECCCCC-HHHHHHHHHHHCCCCCCCCEEEECCC-HHHHCCCCEEEEECC
Q ss_conf 7289988981368999999957998-69999657881-28988307620544688756852697-488378978999556
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLG-DVVLLDIVDGM-PRGKALDIAESSPVEGFGAQLCGTSD-YSDIAEADVCIVTAG 80 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~-ei~L~D~~~~~-~~g~~~Dl~~~~~~~~~~~~v~~~~d-~~~l~~aDivVitag 80 (320)
+||+|||.|.+|+++|..+...+.+ +++-+|++++. ..+..+.+-| . ...+ .+.+++||+||++.-
T Consensus 7 ~~I~IiGlGLIGgSlA~alk~~~~~~~I~g~d~~~~~l~~A~~~g~id---------~--~~~~~~e~~~~~DlIilatP 75 (307)
T PRK07502 7 DRVALIGLGLIGSSLARAIRRQGLAGEIVGAARSAETRARARELGLGD---------R--VTTSAAEAVKGADLVILCVP 75 (307)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCC---------H--HCCCHHHHHCCCCEEEEECC
T ss_conf 668999278799999999985499857999849999999999869975---------1--12777664045897999178
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 666765574678998899999999765412667408871
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICI 119 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivv 119 (320)
. ....++++++.+.+. |++++.=+
T Consensus 76 v------------~~~~~vl~~l~~~l~---~~~ivTDv 99 (307)
T PRK07502 76 V------------GASGAVAAEIAPHLK---PGAIVTDV 99 (307)
T ss_pred H------------HHHHHHHHHHHHHCC---CCCEEEEC
T ss_conf 9------------999999999985558---99689966
No 79
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.58 E-value=0.00059 Score=45.75 Aligned_cols=125 Identities=12% Similarity=0.023 Sum_probs=71.8
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHH--HHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 872899889813689999999579986999965788128988307--620544688756852697488378978999556
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDI--AESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl--~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
+-||+|+|+|.+|+.++..|...+. ++.|+++...+.......- .-..........+. ....+.....|+++++..
T Consensus 2 ~MkI~IiGaGAiG~~~a~~L~~ag~-dV~lv~r~~~~~~~~~~~g~~~~~~~~~~~~~~v~-~~~~~~~~~~D~vivavK 79 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIP-AETADAPEPIHRLLVACK 79 (305)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-CEEEEEECHHHHHHHHHCCCEEEEECCCEEEEECC-CCCCCCCCCCCEEEEEEC
T ss_conf 9889998823999999999984899-73999947899999997899899868955787404-657665788778999804
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCC
Q ss_conf 6667655746789988999999997654126674088714842078999988449986561100052
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGI 147 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~ 147 (320)
... +...++.+.+. .+|++.++.+-|=++..-.+... ||++||++-.+.
T Consensus 80 ~~~------------~~~a~~~l~~~---l~~~t~Iv~lQNGlg~~e~la~~---~~~~~vi~~~~~ 128 (305)
T PRK05708 80 AYD------------AEPAVASLAHR---LAPGAELLLLQNGLGSQDAVAAR---VPHARCIFASST 128 (305)
T ss_pred CCC------------HHHHHHHHHHH---CCCCCEEEEECCCCCHHHHHHHH---CCCCCEEEEEEE
T ss_conf 256------------89999998864---49995899943776479999997---799978999961
No 80
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF; InterPro: IPR012729 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the divergent clade of putative ThiF proteins as found in Campylobacter..
Probab=97.58 E-value=0.00053 Score=46.07 Aligned_cols=105 Identities=15% Similarity=0.182 Sum_probs=74.2
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEC------------------CCCCHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99872899889813689999999579986999965------------------788128988307620544688756852
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDI------------------VDGMPRGKALDIAESSPVEGFGAQLCG 62 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~------------------~~~~~~g~~~Dl~~~~~~~~~~~~v~~ 62 (320)
+++..|+|-|.|..|+++|..|+.-++..|.|+|= -+.|+++..-.|+++.||..+......
T Consensus 19 L~~a~VAicGlGGLGS~~AinLAR~GigkLiLvDfDvvepsNLnRQqY~~s~~G~~KteAlke~i~einPy~~ie~~d~k 98 (200)
T TIGR02354 19 LKKASVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKVSDVGKKKTEALKENISEINPYVEIEIIDEK 98 (200)
T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 50582789701611689999998730220256640432366561325787624862179999878650884212311021
Q ss_pred --CCCHHH-HCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf --697488-3789789995566667655746789988999999997654126674088714
Q gi|254781048|r 63 --TSDYSD-IAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 63 --~~d~~~-l~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
..+.+. ++|+|||+-+.=-| .-=.=++..+-+.-|+-++|.+|
T Consensus 99 i~E~N~~~~fkdaDiv~EAFDna---------------~aKam~~n~vl~~ykdk~li~AS 144 (200)
T TIGR02354 99 IDEENLDKLFKDADIVCEAFDNA---------------EAKAMLVNAVLEKYKDKKLIAAS 144 (200)
T ss_pred CCHHHHHHHHHCCCEEEECCCCH---------------HHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 27667987840674788716998---------------89999999999767864587602
No 81
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.48 E-value=0.0041 Score=40.28 Aligned_cols=115 Identities=18% Similarity=0.222 Sum_probs=66.8
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHH--HCCCCCCCCEEEECCCHHH-HCCCCEEEEEC
Q ss_conf 87289988981368999999957998699996578812898830762--0544688756852697488-37897899955
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAE--SSPVEGFGAQLCGTSDYSD-IAEADVCIVTA 79 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~--~~~~~~~~~~v~~~~d~~~-l~~aDivVita 79 (320)
..||+|+|+|.-|.++|..+..++ .++.|..++++-..-.-.+-.+ -.+-..++..+..+.|.++ +++||++|++.
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~av 79 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAV 79 (329)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEEC
T ss_conf 961899817837999999999669-8469996289999999734767010599628863222468999972299999978
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEEC-----CCCHHHHHHHHHHC
Q ss_conf 66667655746789988999999997654126-674088714-----84207899998844
Q gi|254781048|r 80 GIPRKPSMSRDDLLADNLKAIEKVGAGIRKYA-PNSFVICIT-----NPLDAMVWALQKFS 134 (320)
Q Consensus 80 g~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~~i~ivvt-----NPvDv~~~~~~~~s 134 (320)
|. +-++++.+++..+- ++..++.+| +....|..++.+..
T Consensus 80 --Ps--------------~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l 124 (329)
T COG0240 80 --PS--------------QALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEEL 124 (329)
T ss_pred --CH--------------HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHC
T ss_conf --75--------------7899999987643367874999744655887651999999973
No 82
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC; InterPro: IPR011967 This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring . The sequences included in this entry are all found in possible operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN . Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. .
Probab=97.43 E-value=0.00029 Score=47.75 Aligned_cols=227 Identities=20% Similarity=0.282 Sum_probs=126.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH-----HHHH--------HCCCCCCCCEEEECCCHHH
Q ss_conf 98728998898136899999995799869999657881289883-----0762--------0544688756852697488
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKAL-----DIAE--------SSPVEGFGAQLCGTSDYSD 68 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~-----Dl~~--------~~~~~~~~~~v~~~~d~~~ 68 (320)
+.-||+|||+|..|+-+|...+..+. .+.|||...+ +-+.+. ||+. +....-...+++..++.++
T Consensus 4 ~~v~vaVIGaGaMGaGIA~VAA~aGH-~V~LYD~r~e-A~a~a~agIe~~L~~lV~kgkL~a~e~e~~l~Rl~PV~~l~a 81 (508)
T TIGR02279 4 NVVKVAVIGAGAMGAGIAQVAARAGH-QVLLYDIRAE-ALARAVAGIEKRLKSLVEKGKLTAEEAERTLKRLVPVTDLEA 81 (508)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC-EEEEECCCHH-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHH
T ss_conf 41068996468521038999982598-4887228889-999999999999888752377778888888731787789999
Q ss_pred HCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCH-HHHHHHHHHCCCCHHHHHHH--
Q ss_conf 3789789995566667655746789988999999997654126-6740887148420-78999988449986561100--
Q gi|254781048|r 69 IAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYA-PNSFVICITNPLD-AMVWALQKFSGLPSHMVVGM-- 144 (320)
Q Consensus 69 l~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~~i~ivvtNPvD-v~~~~~~~~sg~~~~rViG~-- 144 (320)
++|||++|-+. -+|.++-+.+-.++...| |++ |+.||-.- ++|.++.... .|+||.|+
T Consensus 82 lAdAgLvIEAi--------------vE~L~VK~aLFaqLe~lc~ad~--iiasNTSSlSIta~AAgla--rP~rvaGlHF 143 (508)
T TIGR02279 82 LADAGLVIEAI--------------VENLEVKKALFAQLEELCTADA--IIASNTSSLSITALAAGLA--RPERVAGLHF 143 (508)
T ss_pred HHHCCCCHHHH--------------HHHHHHHHHHHHHHHHHCCHHH--HHHHCHHHHHHHHHHHHHC--CCCEEEECCC
T ss_conf 86027322467--------------7406777999998986367015--2562325777999997313--8770751113
Q ss_pred ----------------CCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHH
Q ss_conf ----------------0525689999999997198733550567507885246510235447701554300158787679
Q gi|254781048|r 145 ----------------AGILDSARFRYFLAQEFGVSVESVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKLGWTTQEKI 208 (320)
Q Consensus 145 ----------------Gt~LDs~R~~~~ia~~l~v~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~ 208 (320)
.|--+.+-.-+.+ +.-||- .|+-.+++.|=+ ++...+ .+-.|-+
T Consensus 144 FNPAP~MaLVEVVSGLaT~~eVae~ly~~------------a~aWGK-----~PVh~~STPGFI-VNRVAR--PyYaEal 203 (508)
T TIGR02279 144 FNPAPVMALVEVVSGLATEAEVAEQLYET------------ARAWGK-----QPVHARSTPGFI-VNRVAR--PYYAEAL 203 (508)
T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHHH------------HHHCCC-----CCCCCCCCCCCE-ECCCCC--CHHHHHH
T ss_conf 48655362156623635428999999999------------873288-----563234698823-426567--3178999
Q ss_pred HHHHHHHHCCHHHHH-HHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEE
Q ss_conf 999845510158888-7515765432203232344554528897499999997364475634788769
Q gi|254781048|r 209 DQIVKRTREGGAEIV-GLLRSGSAYYAPASSAIAIAESYLKNKKNLLPCAAHLSGQYGVEGFYVGVPV 275 (320)
Q Consensus 209 ~~l~~~v~~~g~~ii-~~~~kg~t~~~~a~a~~~ii~aIl~~~~~v~~~s~~~~g~yg~~~v~~s~P~ 275 (320)
--|.|+.-+ -+.+ .++|.|+-+ .+..+++++-|=+|=+.-++||++ +-+|+-.- |.=+|+
T Consensus 204 R~L~E~~A~--pa~lDA~LRdg~GF---~MGpfELtDLIG~DVNfAVTcSVF-~Af~~drR-F~PSlv 264 (508)
T TIGR02279 204 RVLEEQVAE--PAVLDALLRDGAGF---AMGPFELTDLIGHDVNFAVTCSVF-DAFYQDRR-FLPSLV 264 (508)
T ss_pred HHHHCCCCC--HHHHHHHHHHCCCC---CCCHHHHHHHCCCCCCHHHHHHHH-HHHHHCCC-CCCCHH
T ss_conf 873025768--46898997505888---874466755204552300001023-20100347-898644
No 83
>TIGR01915 npdG NADPH-dependent F420 reductase; InterPro: IPR010185 Members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase..
Probab=97.40 E-value=0.0032 Score=41.02 Aligned_cols=152 Identities=22% Similarity=0.283 Sum_probs=101.1
Q ss_pred EEEEEC-CCCHHHHHHHHHHHCC-----CC-EEEEEECCCCCHHHHHHHHHHHCCCCCCC--CEEEECCCHHHHCCCCEE
Q ss_conf 289988-9813689999999579-----98-69999657881289883076205446887--568526974883789789
Q gi|254781048|r 5 KIALIG-SGMIGGTLAHLAVLKK-----LG-DVVLLDIVDGMPRGKALDIAESSPVEGFG--AQLCGTSDYSDIAEADVC 75 (320)
Q Consensus 5 KV~IIG-aG~VG~~~a~~~~~~~-----l~-ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~--~~v~~~~d~~~l~~aDiv 75 (320)
||+|+| .|..|.-+||.++..+ .. |+++=.++.+||+--|.-..+.....++. .++++.++.++.+.||+|
T Consensus 2 kIAvLGGTGdqG~GLALRlA~~glmPeG~~~~iIIGSR~~EkA~EaA~ka~e~l~~~G~d~~i~~~G~~N~~AA~~aDVV 81 (233)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGLMPEGVDNEIIIGSRDKEKAEEAAAKALEELGDQGVDRDIKVEGAENEEAAKRADVV 81 (233)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHCCEE
T ss_conf 67884488840256999998707787877755577048845699999999999970895136257548877887238978
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHH----------------HHHHHHHCCCCH-
Q ss_conf 995566667655746789988999999997654126674088714842078----------------999988449986-
Q gi|254781048|r 76 IVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAM----------------VWALQKFSGLPS- 138 (320)
Q Consensus 76 Vitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~----------------~~~~~~~sg~~~- 138 (320)
|+|. |. +...+.++++-+++.. +-++|-.++|.+.- +..++++ +|-
T Consensus 82 il~v--P~----------~~~~~~l~~~~~~L~~---dK~Vis~~VPl~~~Ig~~~~~y~~P~eGSaA~~~a~~--lpeq 144 (233)
T TIGR01915 82 ILAV--PF----------DHVLKTLESIKDELEA---DKIVISPVVPLASAIGGKGLRYLPPEEGSAAELVAKL--LPEQ 144 (233)
T ss_pred EEEE--CC----------HHHHHHHHHHHHHHCC---CCEEEECCCCCCHHHCCCCCCCCCCCCCHHHHHHHHH--CCCC
T ss_conf 9984--22----------2247899999998518---9289964787500002443002687310289999985--3326
Q ss_pred -HHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf -5611000525689999999997198733550567507885
Q gi|254781048|r 139 -HMVVGMAGILDSARFRYFLAQEFGVSVESVTALVLGSHGD 178 (320)
Q Consensus 139 -~rViG~Gt~LDs~R~~~~ia~~l~v~~~~V~~~ViGeHGd 178 (320)
.||.+-=-+|=..+|+--+ .++-+-++.|.|+|=+
T Consensus 145 g~~VvaAFhN~~A~~L~D~~-----~~~~D~D~LV~g~de~ 180 (233)
T TIGR01915 145 GSKVVAAFHNISAAKLKDVV-----DEEVDCDVLVCGDDEE 180 (233)
T ss_pred CCEEHHHHCCCCHHHCCCCC-----CCCCCCCEEEECCCHH
T ss_conf 75010212132445404400-----3743345366268777
No 84
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.39 E-value=0.0015 Score=43.06 Aligned_cols=121 Identities=19% Similarity=0.214 Sum_probs=67.8
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH---HHHHCCCCCCCCEEEECCCHHH-HCCCCEEEEECC
Q ss_conf 289988981368999999957998699996578812898830---7620544688756852697488-378978999556
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALD---IAESSPVEGFGAQLCGTSDYSD-IAEADVCIVTAG 80 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~D---l~~~~~~~~~~~~v~~~~d~~~-l~~aDivVitag 80 (320)
||.|+|+|.+|+.++..+...+. ++.|+-+. +.++....+ +... ...+........+.++ ...+|+++++..
T Consensus 2 kI~I~GaGAiG~~~a~~L~~~g~-~V~lv~r~-~~~~~i~~~Gl~i~~~--~~~~~~~~~~~~~~~~~~~~~D~viva~K 77 (306)
T PRK12921 2 KIAVVGAGAVGGTFGARLLEAGR-DVTFLGRS-ARAEALREKGLVIRSD--HGDVTVPGPVITDPEEITGPFDLVILAVK 77 (306)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-CEEEEEEC-CHHHHHHHCCEEEEEC--CCEEEEECCCCCCCHHHCCCCCEEEEEEC
T ss_conf 89999924999999999983699-88999700-0999999789699977--97699806105080565689768999704
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCC
Q ss_conf 6667655746789988999999997654126674088714842078999988449986561100052
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGI 147 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~ 147 (320)
.+.. ...+..+.+. ..|++.++.+-|=++..- .+.+. ||++||++.-|+
T Consensus 78 s~~~------------~~a~~~l~~~---~~~~t~il~lQNG~g~~~-~l~~~--~~~~~v~~gv~~ 126 (306)
T PRK12921 78 AYQL------------DAAIPDLKPL---VGEDTVIIPLQNGIGHLE-TLEKY--FGRERVLGGVVY 126 (306)
T ss_pred CCCH------------HHHHHHHHHH---CCCCCEEEEECCCCCHHH-HHHHH--CCCCCEEEEEEE
T ss_conf 5677------------9999999863---399948999348775388-99865--575537899999
No 85
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.36 E-value=0.0011 Score=44.01 Aligned_cols=104 Identities=21% Similarity=0.325 Sum_probs=70.3
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCC-HHHHCCCCEEEEECC
Q ss_conf 9872899889813689999999579986999965788128988307620544688756852697-488378978999556
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSD-YSDIAEADVCIVTAG 80 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d-~~~l~~aDivVitag 80 (320)
+.+|+.+||||-.|..+|.-+...++.++....++.++++-.+..+. .....-.+ .+.+.++|+|+.+.|
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~---------~~~~~l~el~~~l~~~DvVissTs 247 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG---------AEAVALEELLEALAEADVVISSTS 247 (414)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHC---------CEEECHHHHHHHHHHCCEEEEECC
T ss_conf 46769998651899999999985898779997587899999999838---------702218778876520799999069
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-CEEEECCCCHHHHH
Q ss_conf 6667655746789988999999997654126674-08871484207899
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNS-FVICITNPLDAMVW 128 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~-i~ivvtNPvDv~~~ 128 (320)
.|. |--++.++- ..+. .+.. +++=+++|=|+-..
T Consensus 248 a~~-~ii~~~~ve-----------~a~~--~r~~~livDiavPRdie~~ 282 (414)
T COG0373 248 APH-PIITREMVE-----------RALK--IRKRLLIVDIAVPRDVEPE 282 (414)
T ss_pred CCC-CCCCHHHHH-----------HHHH--CCCCEEEEEECCCCCCCCC
T ss_conf 985-540788899-----------8874--1167599982699998722
No 86
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=97.35 E-value=0.0048 Score=39.86 Aligned_cols=223 Identities=14% Similarity=0.157 Sum_probs=113.5
Q ss_pred CCCCEEEEEC-CCCHHHHHHHHHHHC-CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEE--ECCCH----HHHCCC
Q ss_conf 9987289988-981368999999957-998699996578812898830762054468875685--26974----883789
Q gi|254781048|r 1 MKSNKIALIG-SGMIGGTLAHLAVLK-KLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLC--GTSDY----SDIAEA 72 (320)
Q Consensus 1 mk~~KV~IIG-aG~VG~~~a~~~~~~-~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~--~~~d~----~~l~~a 72 (320)
++.++|-|.| +|.+|++++-.++.+ ....++++|+++-+..-....+.+ ...+.. -..|+ ..+++.
T Consensus 2 ~~~K~ILVTGGaGfIGS~lv~~Ll~~~~~~~iii~~~de~~~~~l~~~~~~------~~i~f~~gDIrD~~~l~~~~~~v 75 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA------PCLRFFIGDVRDKERLTRALRGV 75 (324)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCC------CCEEEEECCCCCHHHHHHHHCCC
T ss_conf 993999990797799999999999729982899966864032889851689------87599967777889999763488
Q ss_pred CEEEEECCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC----CCCHHHHHHHHHHCCCCHHHHHHHCC
Q ss_conf 789995566667655--746789988999999997654126674088714----84207899998844998656110005
Q gi|254781048|r 73 DVCIVTAGIPRKPSM--SRDDLLADNLKAIEKVGAGIRKYAPNSFVICIT----NPLDAMVWALQKFSGLPSHMVVGMAG 146 (320)
Q Consensus 73 DivVitag~~~~~g~--~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvt----NPvDv~~~~~~~~sg~~~~rViG~Gt 146 (320)
|+|+-+|....-|-. ...+..+.|.-=...+.+...+++-+-++.+-| ||.+.| -+.|. -.++++-.
T Consensus 76 D~VfHaAA~khVp~se~nP~e~i~tNV~Gt~nlleaa~~~~Vkk~V~iSTDka~~P~n~y--GasK~---~~E~l~~~-- 148 (324)
T TIGR03589 76 DYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDKAANPINLY--GATKL---ASDKLFVA-- 148 (324)
T ss_pred CEEEECCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC--CCCHH---HHHHHHHH--
T ss_conf 899994627767267769899999997999999999885554317862268888996743--12367---67999999--
Q ss_pred CHHHHHHHHHHHHHCCCCCCCC-EEEEECCCCCEEEEECCCCCCCCC-HHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHH
Q ss_conf 2568999999999719873355-056750788524651023544770-15543001587876799998455101588887
Q gi|254781048|r 147 ILDSARFRYFLAQEFGVSVESV-TALVLGSHGDSMVPMLRYATVSGI-PVSDLVKLGWTTQEKIDQIVKRTREGGAEIVG 224 (320)
Q Consensus 147 ~LDs~R~~~~ia~~l~v~~~~V-~~~ViGeHGds~vp~~S~~~v~g~-p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~ 224 (320)
....+...+..-..+ .+-|+|-.| |-+|.|-.--..|. |+.-.-+......-.+++-++-+-.+. +
T Consensus 149 -------~~~~~~~~~~~~~~vRygNV~gsrg-SViP~F~~qi~~g~~~~~itd~~mtRf~mtv~dav~lV~~a~----~ 216 (324)
T TIGR03589 149 -------ANNISGSKGTRFSVVRYGNVVGSRG-SVVPFFKSLKEEGVTELPITDPRMTRFWITLEQGVNFVLKSL----E 216 (324)
T ss_pred -------HHHHHCCCCCEEEEEEECCCCCCCC-CCHHHHHHHHHCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHH----H
T ss_conf -------9985078886378863327518886-639999999983999744499980799888999999999999----8
Q ss_pred HHCCCCCCC---CCHHHHHHHHHHHHCC
Q ss_conf 515765432---2032323445545288
Q gi|254781048|r 225 LLRSGSAYY---APASSAIAIAESYLKN 249 (320)
Q Consensus 225 ~~~kg~t~~---~~a~a~~~ii~aIl~~ 249 (320)
. ++|..-| .++.-+.++.+++..+
T Consensus 217 ~-~~~GEifv~k~~s~~i~dla~~~~~~ 243 (324)
T TIGR03589 217 R-MLGGEIFVPKIPSMKITDLAEAMAPE 243 (324)
T ss_pred H-CCCCEEEECCCCCCHHHHHHHHHHCC
T ss_conf 2-88984998369702599999986046
No 87
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=97.34 E-value=0.0034 Score=40.87 Aligned_cols=222 Identities=18% Similarity=0.211 Sum_probs=135.4
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH----HHHCC--CCE
Q ss_conf 9872899889-8136899999995799869999657881289883076205446887568526974----88378--978
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY----SDIAE--ADV 74 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~----~~l~~--aDi 74 (320)
+.+.|-|.|+ |.+|+.+.-.++..+..+|+++|++|.+..-..+++++..+.......+-...|+ ..+.+ .|+
T Consensus 249 ~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~ 328 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDI 328 (588)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCE
T ss_conf 79889996898736799999998549878999617637799999999862787516899635346899999986388866
Q ss_pred EEEECCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE----CCCCHHH--HHHHHHHCCCCHHH-HHHHC
Q ss_conf 9995566667655--74678998899999999765412667408871----4842078--99998844998656-11000
Q gi|254781048|r 75 CIVTAGIPRKPSM--SRDDLLADNLKAIEKVGAGIRKYAPNSFVICI----TNPLDAM--VWALQKFSGLPSHM-VVGMA 145 (320)
Q Consensus 75 vVitag~~~~~g~--~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivv----tNPvDv~--~~~~~~~sg~~~~r-ViG~G 145 (320)
|.-+|....-|-+ .-.+-...|.-=-+++++...+++-+.++++- -||.|+| |..+++.--...++ .=|.+
T Consensus 329 VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvmGaTKr~aE~~~~a~~~~~~~~~ 408 (588)
T COG1086 329 VFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVMGATKRLAEKLFQAANRNVSGTG 408 (588)
T ss_pred EEEHHHHCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 88755553686310188999987217389999999983977899970586668841766889999999999741048888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCC-EEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHH
Q ss_conf 52568999999999719873355-05675078852465102354477015543001587876799998455101588887
Q gi|254781048|r 146 GILDSARFRYFLAQEFGVSVESV-TALVLGSHGDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVG 224 (320)
Q Consensus 146 t~LDs~R~~~~ia~~l~v~~~~V-~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~ 224 (320)
|.. ..| .+=|+|-. -|.+|+|..---.|.|++=.-+.-....--+.+-.+-|-+++..
T Consensus 409 T~f-----------------~~VRFGNVlGSr-GSViPlFk~QI~~GgplTvTdp~mtRyfMTI~EAv~LVlqA~a~--- 467 (588)
T COG1086 409 TRF-----------------CVVRFGNVLGSR-GSVIPLFKKQIAEGGPLTVTDPDMTRFFMTIPEAVQLVLQAGAI--- 467 (588)
T ss_pred CEE-----------------EEEEECCEECCC-CCCHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHH---
T ss_conf 579-----------------999825454588-77778899999759984546867056788899999999998750---
Q ss_pred HHCCCCCC----CCCHHHHHHHHHHH
Q ss_conf 51576543----22032323445545
Q gi|254781048|r 225 LLRSGSAY----YAPASSAIAIAESY 246 (320)
Q Consensus 225 ~~~kg~t~----~~~a~a~~~ii~aI 246 (320)
++|... -|+...+.++.+++
T Consensus 468 --~~gGeifvldMGepvkI~dLAk~m 491 (588)
T COG1086 468 --AKGGEIFVLDMGEPVKIIDLAKAM 491 (588)
T ss_pred --CCCCCEEEECCCCCEEHHHHHHHH
T ss_conf --689858998189972799999999
No 88
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase; InterPro: IPR003710 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway . Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE . ApbA and PanE are allelic .; GO: 0008677 2-dehydropantoate 2-reductase activity, 0006206 pyrimidine base metabolic process.
Probab=97.33 E-value=0.0016 Score=43.01 Aligned_cols=171 Identities=18% Similarity=0.166 Sum_probs=95.7
Q ss_pred EEEEECCCCHHHHHHHHHHHCC-CCEEEEEECCC--CCHHHHHHH---HHHHCC--CCCCCCEEEECCCHHHHC--CCCE
Q ss_conf 2899889813689999999579-98699996578--812898830---762054--468875685269748837--8978
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKK-LGDVVLLDIVD--GMPRGKALD---IAESSP--VEGFGAQLCGTSDYSDIA--EADV 74 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~-l~ei~L~D~~~--~~~~g~~~D---l~~~~~--~~~~~~~v~~~~d~~~l~--~aDi 74 (320)
||+|+|+|.||+.+++.|...+ =.++.++++.. ..++....+ +..-.- ...+...+...++.+.+. ++|+
T Consensus 1 ~i~i~G~GA~G~l~ga~L~~~g~~~~V~~~~R~~r~~~~~~~~~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 80 (332)
T TIGR00745 1 KIAIIGAGAVGSLYGARLARAGANHDVTLLARGKRPKQLEALNQEGLRIVSLDGEGVFELKIPVSAATDPETLPPQKADL 80 (332)
T ss_pred CEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCEEEECCCCCCEEEECCCEEECCCCCCCCCCCCE
T ss_conf 96899517889999999873189951899988721688999985883897625677503304412204753357877548
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHH
Q ss_conf 99955666676557467899889999999976541266740887148420789999884499865611000525689999
Q gi|254781048|r 75 CIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFR 154 (320)
Q Consensus 75 vVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~ 154 (320)
++||...... .+. +..+. ...+++++++..=|=+...-.+...... ++++|++--|..-..|-
T Consensus 81 ~~~~~K~~~~-----~~~-------~~~~~---~~~~~~~~vl~lqNG~g~~e~l~~~~~~-n~~~~l~G~~~~ga~~~- 143 (332)
T TIGR00745 81 VIITVKAYQT-----EEA-------LALLL---PLIGPNTVVLLLQNGLGHEEKLAELLPE-NRRRVLGGVTTHGAARE- 143 (332)
T ss_pred EEEEECCCCH-----HHH-------HHHHH---HHCCCCCEEEEEECCCHHHHHHHHHCCC-CCCCEEEEEEEEEEEEE-
T ss_conf 9997035004-----899-------99998---6418882799973880279999985069-97708999998876770-
Q ss_pred HHHHHHCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCCCC
Q ss_conf 99999719873355056750788524651023544770155430015878
Q gi|254781048|r 155 YFLAQEFGVSVESVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKLGWTT 204 (320)
Q Consensus 155 ~~ia~~l~v~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~~~ 204 (320)
.-| ........|.+.+..++.. -....+.+.++.-++.
T Consensus 144 -----~~g------~~~~~~g~G~~~~G~~~~~-~~~~~~a~~l~~ag~~ 181 (332)
T TIGR00745 144 -----EPG------LVVHHAGEGATKIGDYVGE-EAVEALAELLNEAGIP 181 (332)
T ss_pred -----CCC------EEEEEECCCEEEECCCCCH-HHHHHHHHHHHHCCCC
T ss_conf -----884------0899723633884577764-5789999997317985
No 89
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.31 E-value=0.0018 Score=42.67 Aligned_cols=68 Identities=10% Similarity=0.234 Sum_probs=43.8
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCC-C--CEEEEEECC-CCCHHHHHHHHHHHCCCCCCCCEEEECCC-HHHHCCCCEE
Q ss_conf 99872899889813689999999579-9--869999657-88128988307620544688756852697-4883789789
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKK-L--GDVVLLDIV-DGMPRGKALDIAESSPVEGFGAQLCGTSD-YSDIAEADVC 75 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~-l--~ei~L~D~~-~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d-~~~l~~aDiv 75 (320)
|+++||++||+|+.|++++..++..+ . .++.+.+.. .++++. +.+- +.... ..| .+.+++||+|
T Consensus 2 ~~~~kI~fIG~GnMg~Aii~gll~~~~~~~~~i~v~~~~~~~~~~~----l~~~-----~~i~~--~~~~~~~~~~~d~I 70 (245)
T PRK07634 2 LTKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQ----LQAR-----YNVST--TTDWKQHVTSVDTI 70 (245)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHH----HHHH-----CCCEE--CCCHHHHHHHCCEE
T ss_conf 9999199987589999999999977999960599969999999999----9997-----19742--27779998559999
Q ss_pred EEEC
Q ss_conf 9955
Q gi|254781048|r 76 IVTA 79 (320)
Q Consensus 76 Vita 79 (320)
+++.
T Consensus 71 ilav 74 (245)
T PRK07634 71 VLAM 74 (245)
T ss_pred EEEE
T ss_conf 9998
No 90
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.29 E-value=0.0035 Score=40.73 Aligned_cols=91 Identities=16% Similarity=0.329 Sum_probs=55.0
Q ss_pred EEEEECCCCHHHHHHHHHHHCCC--CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCC
Q ss_conf 28998898136899999995799--8699996578812898830762054468875685269748837897899955666
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKL--GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIP 82 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l--~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~ 82 (320)
||++||+|+.|++++..++..+. .++.+.|+++++..- |.+. ++ ...+ ..++.+.+.+||+|+++.
T Consensus 2 kIgfIG~GnMg~Aii~Gl~~~~~~~~~i~v~~r~~~~~~~----l~~~---~~-~v~~-~~~n~~~~~~~dvi~LaV--- 69 (255)
T PRK06476 2 RIGFIGTGAITEAMVTGLLSSPADVSEIIVSPRNAQIAAR----LAAR---FA-KVRI-AKDNQAVVDRSDVVFLAV--- 69 (255)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHH----HHHH---CC-CEEE-ECCHHHHHHHCCEEEEEE---
T ss_conf 8999864699999999999788992508898989899999----9987---69-5598-578899985188788861---
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 676557467899889999999976541266740887148
Q gi|254781048|r 83 RKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITN 121 (320)
Q Consensus 83 ~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtN 121 (320)
||. .+.++.+.++ +.++.++|-+.-
T Consensus 70 -KP~------------~~~~vl~~l~-~~~~~~vISi~A 94 (255)
T PRK06476 70 -RPQ------------IAEEVLRALR-FRPGQTVISVIA 94 (255)
T ss_pred -CHH------------HHHHHHHHHH-CCCCCEEEEECC
T ss_conf -788------------8998877620-578978999737
No 91
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.26 E-value=0.0079 Score=38.46 Aligned_cols=131 Identities=21% Similarity=0.226 Sum_probs=76.3
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEEECC
Q ss_conf 98728998898136899999995799869999657881289883076205446887568526974-88378978999556
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIVTAG 80 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVitag 80 (320)
+.+++.|+|+|..+.++++.+...+..++.++++++++++..+.++... .......+. ....++|++|-|..
T Consensus 121 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~a~~l~~~~~~~-------~~~~~~~~~~~~~~~~diiInaTp 193 (275)
T PRK00258 121 KGKRILLLGAGGAARAVILPLLELGVAEITIVNRTVERAEELAELFGEG-------VQALGLDELAGELADFDLIINTTS 193 (275)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCC-------CCEEEHHHHHHCCCCCCEEEECCC
T ss_conf 6875999888710799999999769998999958999999999983567-------627537875430445777996577
Q ss_pred CCCCCCCC-HHHHHHHHHHHHHHHHHHHHHCCCCCC-EEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHH
Q ss_conf 66676557-467899889999999976541266740-887148420789999884499865611000525689999999
Q gi|254781048|r 81 IPRKPSMS-RDDLLADNLKAIEKVGAGIRKYAPNSF-VICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFL 157 (320)
Q Consensus 81 ~~~~~g~~-R~dll~~N~~i~~~i~~~i~~~~p~~i-~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~i 157 (320)
. ||. ..+.+. .....++.+ +=++-||-++.-.-.++..|+. -+=|..+.+..+.....+
T Consensus 194 ~----Gm~~~~~~~~------------~~~~~~~~~v~D~~Y~P~~T~ll~~a~~~G~~--~i~Gl~Mli~Qa~~qf~i 254 (275)
T PRK00258 194 A----GMSGELPPLP------------ASLLRPGTVVYDMIYGPLPTPFLAWAKAQGAR--TVDGLGMLVHQAAEAFEL 254 (275)
T ss_pred C----CCCCCCCHHH------------HHHCCCCCEEEEEEECCCCCHHHHHHHHCCCE--EECCHHHHHHHHHHHHHH
T ss_conf 7----7778865113------------87648886699866579999999999988294--857799999999999999
No 92
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.23 E-value=0.0015 Score=43.13 Aligned_cols=133 Identities=18% Similarity=0.175 Sum_probs=79.6
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 99872899889813689999999579986999965788128988307620544688756852697488378978999556
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
.+.++|.|+|+|..+.++++.+...+..+|.+++++.++++..+.++..... ... .....+...++|+||-|.-
T Consensus 17 ~~~k~vlIlGaGGaarai~~aL~~~g~~~I~i~nR~~~r~~~l~~~~~~~~~----~~~--~~~~~~~~~~~dliIN~tp 90 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGI----AIA--YLDLEELLAEADLIINTTP 90 (155)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC----CEE--ECCHHHHHCCCCEEEECCC
T ss_conf 5799999986758999999999971998228860899999999998501366----401--0453443156887987677
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-CEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHH
Q ss_conf 6667655746789988999999997654126674-08871484207899998844998656110005256899999
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNS-FVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRY 155 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~-i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~ 155 (320)
.-.++.. ...+.. ....++. ++=++-||..+--.-.++..|.+ -+=|..+.+..+....
T Consensus 91 ~G~~~~~--~~p~~~------------~~~~~~~~~~D~iY~P~~T~ll~~a~~~g~~--~i~Gl~Mli~Qa~~~f 150 (155)
T cd01065 91 VGMKPGD--ELPLPP------------SLLKPGGVVYDVVYNPLETPLLKEARALGAK--TIDGLEMLVYQAAEAF 150 (155)
T ss_pred CCCCCCC--CCCCCH------------HHCCCCCEEEECCCCCCCCHHHHHHHHCCCE--EECCHHHHHHHHHHHH
T ss_conf 8777877--676788------------7759986898653178788999999998395--8773999999999999
No 93
>PRK06046 alanine dehydrogenase; Validated
Probab=97.20 E-value=0.0029 Score=41.28 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=54.4
Q ss_pred CCEEEEECCCCHHHHHHH-HHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEEC
Q ss_conf 872899889813689999-99957998699996578812898830762054468875685269748837897899955
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAH-LAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTA 79 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~-~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVita 79 (320)
.++++|||+|..+.+-+. ++...++.++.++|+++++++..+.++.+.. + ..+....+.+++.+||||+.+.
T Consensus 129 ~~~l~iiG~G~Qa~~~~~al~~v~~i~~i~v~~r~~~~~~~fa~~~~~~~---~--~~v~~~~~~~~~~~aDiI~taT 201 (326)
T PRK06046 129 SKVIGIIGAGNQARTQLEALSRVFDLEEVRVYDRTKESCEKFISEMSDFV---P--CEIVYEEDVEEACDCDILVTTT 201 (326)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHC---C--CCEEECCCHHHHHCCCEEEEEE
T ss_conf 85589965708899999999973897789999189999999999998655---9--8659739999982799999982
No 94
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.19 E-value=0.00097 Score=44.36 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=17.6
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH
Q ss_conf 872899889813689999999579986999965788128988
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKA 44 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~ 44 (320)
.+||.|||+|..|..++..+...+..++.+..++.++++..+
T Consensus 178 ~~~vLviGaGem~~l~~~~L~~~g~~~i~v~nRt~~ra~~la 219 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELA 219 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
T ss_conf 167999868799999999999659982599768678999999
No 95
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.19 E-value=0.0011 Score=44.13 Aligned_cols=105 Identities=20% Similarity=0.308 Sum_probs=69.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCC-HHHHCCCCEEEEECC
Q ss_conf 9872899889813689999999579986999965788128988307620544688756852697-488378978999556
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSD-YSDIAEADVCIVTAG 80 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d-~~~l~~aDivVitag 80 (320)
..+||.|||+|..|..++..+...++.++.+..++.++++..+..+ ......-.+ ++.+.++|+||.+.|
T Consensus 181 ~~~~vlviGaGem~~l~~k~L~~~g~~~i~v~nRt~~ra~~la~~~---------~~~~~~~~~l~~~l~~~DvvisaT~ 251 (429)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEF---------GAEAIPLEELPEALAEADIVISSTA 251 (429)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHC---------CCEEECHHHHHHHHHHCCEEEEECC
T ss_conf 2065999767489999999998559984999758677899999975---------9889749999999965899999448
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-CEEEECCCCHHHH
Q ss_conf 6667655746789988999999997654126674-0887148420789
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNS-FVICITNPLDAMV 127 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~-i~ivvtNPvDv~~ 127 (320)
.|. |-.++.. ++... .+-.... +++=.+.|=|+=.
T Consensus 252 s~~-~ii~~~~--------~~~~~---~~r~~~~~~iiDLavPRdidp 287 (429)
T PRK00045 252 APH-PIITKGM--------VERAL---KQRRHRPLLLIDLAVPRDIEP 287 (429)
T ss_pred CCC-CCCCHHH--------HHHHH---HHCCCCCEEEEECCCCCCCCH
T ss_conf 997-5027999--------99998---734699569996168877744
No 96
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.17 E-value=0.0076 Score=38.55 Aligned_cols=126 Identities=24% Similarity=0.247 Sum_probs=69.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH--------HHHHHCCCCCCCCEEEECCCHHHHCCCCEE
Q ss_conf 728998898136899999995799869999657881289883--------076205446887568526974883789789
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKAL--------DIAESSPVEGFGAQLCGTSDYSDIAEADVC 75 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~--------Dl~~~~~~~~~~~~v~~~~d~~~l~~aDiv 75 (320)
.+|+|||.|.||-.+|-..+..+. +++=+||++.+.+..-. |+..-..-.-...+...++|+++++.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~-~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGF-KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVF 88 (436)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC-CEEEEECCHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCEEECCHHHCCCCCEE
T ss_conf 289998246445788999987699-5575757889988875786425468688999999863971575685562548889
Q ss_pred EEECCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE--CCCCHH---HH-HHHHHHCCCC
Q ss_conf 99556666765-574678998899999999765412667408871--484207---89-9998844998
Q gi|254781048|r 76 IVTAGIPRKPS-MSRDDLLADNLKAIEKVGAGIRKYAPNSFVICI--TNPLDA---MV-WALQKFSGLP 137 (320)
Q Consensus 76 Vitag~~~~~g-~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivv--tNPvDv---~~-~~~~~~sg~~ 137 (320)
+|+.-.|-+.. +.-+..+ ++-++.|+++=-.|-+++. |-|.-. ++ ++..+.||+.
T Consensus 89 iI~VPTPl~~~~~pDls~v-------~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~ 150 (436)
T COG0677 89 IICVPTPLKKYREPDLSYV-------ESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK 150 (436)
T ss_pred EEEECCCCCCCCCCCHHHH-------HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 9993577678999884899-------9999999975677888999647899857888999985068976
No 97
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.15 E-value=0.0041 Score=40.31 Aligned_cols=121 Identities=16% Similarity=0.221 Sum_probs=73.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCC-CEEE-EEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHH-HCCCCEEEEECC
Q ss_conf 728998898136899999995799-8699-9965788128988307620544688756852697488-378978999556
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKL-GDVV-LLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSD-IAEADVCIVTAG 80 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l-~ei~-L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~-l~~aDivVitag 80 (320)
.||+|||.|.+|+.++..+..+.+ .+++ .+|++.++++..+. + . .... ..+.++ ++.+|+||-+||
T Consensus 2 ~rVgiIG~GaIG~~Va~~l~~g~~~~~L~~V~~r~~~~a~~~a~-~------~--~~~~--~~~ld~l~~~~DlVVE~A~ 70 (265)
T PRK13304 2 LKIGIVGCGAIANLITKAIDSGRINAELLAFYDRNLEKAENLAE-K------T--GAPA--CLSIDELVKDVDLVVECAS 70 (265)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHH-C------C--CCCC--CCCHHHHHHCCCEEEECCC
T ss_conf 49999865789999999986799864999997898789887764-1------5--9971--2798998338999998989
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHH----HHHHHCCCCHHHH-HHHC--CCHHHHHH
Q ss_conf 666765574678998899999999765412667408871484207899----9988449986561-1000--52568999
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVW----ALQKFSGLPSHMV-VGMA--GILDSARF 153 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~----~~~~~sg~~~~rV-iG~G--t~LDs~R~ 153 (320)
. ..++++++.+-+.+-+-+++-++-=.|--.+ -..+.+| .|+ +-+| .-||-.|.
T Consensus 71 ~----------------~av~~~~~~~L~~G~dlvv~SvGALaD~~l~~~L~~~A~~~g---~~i~ipsGAigGlD~l~a 131 (265)
T PRK13304 71 Q----------------KAVEDTVPKSLNNGKDVIIMSVGALADKELFLKLYKLAKENG---CKIYLPSGAIAGIDGIKA 131 (265)
T ss_pred H----------------HHHHHHHHHHHHCCCCEEEECHHHHCCHHHHHHHHHHHHHCC---CEEEECCCHHHHHHHHHH
T ss_conf 8----------------999999999997599899981368559899999999997379---779982613442788999
Q ss_pred H
Q ss_conf 9
Q gi|254781048|r 154 R 154 (320)
Q Consensus 154 ~ 154 (320)
-
T Consensus 132 a 132 (265)
T PRK13304 132 A 132 (265)
T ss_pred H
T ss_conf 8
No 98
>pfam02423 OCD_Mu_crystall Ornithine cyclodeaminase/mu-crystallin family. This family contains the bacterial Ornithine cyclodeaminase enzyme EC:4.3.1.12, which catalyses the deamination of ornithine to proline. This family also contains mu-Crystallin the major component of the eye lens in several Australian marsupials, mRNA for this protein has also been found in human retina.
Probab=97.10 E-value=0.0047 Score=39.91 Aligned_cols=73 Identities=15% Similarity=0.251 Sum_probs=52.1
Q ss_pred CCEEEEECCCCHHHHHHH-HHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHH-HHCCCCEEEEECC
Q ss_conf 872899889813689999-99957998699996578812898830762054468875685269748-8378978999556
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAH-LAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYS-DIAEADVCIVTAG 80 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~-~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~-~l~~aDivVitag 80 (320)
...++|||+|.-+.+-.. ++...++.++.++|+++++++..+..+++. ...+....+.+ .+++||||+.+..
T Consensus 129 a~~l~iiGaG~QA~~~l~al~~v~~i~~v~v~~r~~~~~~~f~~~~~~~------~~~v~~~~~~~~av~~ADIIvtaT~ 202 (312)
T pfam02423 129 ASTLAIIGAGAQAEFQAEALSAVLPIEEIRIYDRDPEAAEKFARNLQGK------GFEIVACTSAEEAVEGADIVVTVTP 202 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHC------CCCEEEECCHHHHHHCCCEEEEEEC
T ss_conf 7579996462538999999996199768999968989999999999834------9965994899999714998999735
Q ss_pred C
Q ss_conf 6
Q gi|254781048|r 81 I 81 (320)
Q Consensus 81 ~ 81 (320)
.
T Consensus 203 s 203 (312)
T pfam02423 203 D 203 (312)
T ss_pred C
T ss_conf 9
No 99
>TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process.
Probab=97.08 E-value=0.0017 Score=42.82 Aligned_cols=114 Identities=27% Similarity=0.387 Sum_probs=77.8
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHH-HCCCCCCCCEEEECCC-HHHHCCCCEEEEE
Q ss_conf 9987289988981368999999957998699996578812898830762-0544688756852697-4883789789995
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAE-SSPVEGFGAQLCGTSD-YSDIAEADVCIVT 78 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~-~~~~~~~~~~v~~~~d-~~~l~~aDivVit 78 (320)
++..|+-|||||..|..+|.-|..+++.++....++..|++-.|..|.. .. ..+.+- ..++ .+.++.+||||.+
T Consensus 183 L~~~~~LliGAGeMg~Lva~~L~~~~v~~~~i~NRt~~rA~~LA~e~~~P~~--~~f~~L--a~~~L~~~L~~~Diviss 258 (436)
T TIGR01035 183 LKGKKVLLIGAGEMGELVAKHLREKGVGKVLIANRTYERAEKLAKELGGPEA--VKFEAL--ALEKLEEALAEADIVISS 258 (436)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCC--CCCCHH--HHHHHHHHHHHCCEEEEE
T ss_conf 1664189982745799999999648952898855677899999987078664--544455--489999997428899985
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHH--HCCCCCCEEEECCCCHHHH
Q ss_conf 566667655746789988999999997654--1266740887148420789
Q gi|254781048|r 79 AGIPRKPSMSRDDLLADNLKAIEKVGAGIR--KYAPNSFVICITNPLDAMV 127 (320)
Q Consensus 79 ag~~~~~g~~R~dll~~N~~i~~~i~~~i~--~~~p~~i~ivvtNPvDv~~ 127 (320)
-|+|. |=-+|.|+ ......=+ ++.-.-+++=+++|=|+=.
T Consensus 259 TgA~~-pi~~~~~~--------e~a~~~Rr~de~~~pl~~~DIAvPRdvd~ 300 (436)
T TIGR01035 259 TGAPE-PIVSKEDV--------ERALKERRRDEAARPLFIVDIAVPRDVDP 300 (436)
T ss_pred CCCCC-CCCCCHHH--------HHHHHHHCCCCCCCCEEEEECCCCCCCCH
T ss_conf 57653-10020348--------99999722200158869997588998637
No 100
>PRK08291 ornithine cyclodeaminase; Validated
Probab=97.03 E-value=0.0046 Score=40.01 Aligned_cols=72 Identities=17% Similarity=0.293 Sum_probs=52.7
Q ss_pred CCEEEEECCCCHHHHH-HHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEEEC
Q ss_conf 8728998898136899-999995799869999657881289883076205446887568526974-8837897899955
Q gi|254781048|r 3 SNKIALIGSGMIGGTL-AHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIVTA 79 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~-a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVita 79 (320)
.+.++|||+|.-+.+. ..+....++.++.++|+++++++..+.++.+.. + ..+....+. +++++||||+.+.
T Consensus 132 a~~l~iiG~G~QA~~~l~Al~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~---g--~~v~~~~~~~~av~~aDIIvtaT 205 (330)
T PRK08291 132 ASRVAVFGAGEQARLQLEALTLVRDIREVRVWARDAAKAEAFAAELRAAL---G--IPVTVARDVHAALAGADIVVTTT 205 (330)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH---C--CCEEEECCHHHHHHCCCEEEEEE
T ss_conf 85699987648899999999973897689998389899999999998976---9--96699299999972288899976
No 101
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.01 E-value=0.01 Score=37.77 Aligned_cols=122 Identities=18% Similarity=0.146 Sum_probs=70.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHH-CCCCEEEEECCCC
Q ss_conf 728998898136899999995799869999657881289883076205446887568526974883-7897899955666
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDI-AEADVCIVTAGIP 82 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l-~~aDivVitag~~ 82 (320)
-||+|||.|++|..++..+..+...++..+.............+ .....+ ..+.+++ .++|+||-+||.
T Consensus 2 mrVgiiG~GaIG~~va~~l~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~~~--~~~~~~L~~~~DlVVE~A~~- 71 (265)
T PRK13303 2 MKVAMIGFGAIAAAVYELLEHDPRLRVDWVIVPEHSVDAVRRAL-------GRAVQV--VSSVDALAQRPDLVVECAGH- 71 (265)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHH-------CCCCCC--CCCHHHHHHCCCEEEECCCH-
T ss_conf 29999854689999999984499727999994685267787530-------458864--47988982379999989888-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHH----HHHHHCCCCHHHHH-HHC--CCHHHHHH
Q ss_conf 6765574678998899999999765412667408871484207899----99884499865611-000--52568999
Q gi|254781048|r 83 RKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVW----ALQKFSGLPSHMVV-GMA--GILDSARF 153 (320)
Q Consensus 83 ~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~----~~~~~sg~~~~rVi-G~G--t~LDs~R~ 153 (320)
..++++++++-+.+-+-+++-++-=.|--.+ -..+.+| .|++ -+| .-||-.+.
T Consensus 72 ---------------~av~~~~~~~L~~g~dl~v~SvgALaD~~~~~~l~~~A~~~~---~~i~ipsGAigGlD~l~a 131 (265)
T PRK13303 72 ---------------AALKEHVVPILKAGIDCAVASVGALADEALRERLEQAAEAGG---ARLHLLSGAIGGIDALAA 131 (265)
T ss_pred ---------------HHHHHHHHHHHHCCCCEEEECCHHHCCHHHHHHHHHHHHHCC---CEEEECCCHHHHHHHHHH
T ss_conf ---------------999999999997299889988158579889999999998689---759972623440679999
No 102
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.01 E-value=0.0066 Score=38.98 Aligned_cols=104 Identities=24% Similarity=0.346 Sum_probs=71.7
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCC-E-EEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHH-CCCCEEEEECCC
Q ss_conf 289988981368999999957998-6-9999657881289883076205446887568526974883-789789995566
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLG-D-VVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDI-AEADVCIVTAGI 81 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~-e-i~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l-~~aDivVitag~ 81 (320)
||+|||+|.+|..+.-++..+.+. | ...+|+++++++....- + ..+.. .+.+++ .+.|++|-+|+.
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~------~---~~~~~--s~ide~~~~~DlvVEaAS~ 70 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEAS------V---GRRCV--SDIDELIAEVDLVVEAASP 70 (255)
T ss_pred EEEEEECCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHH------C---CCCCC--CCHHHHHHCCCEEEEECCH
T ss_conf 57898233788999999866886436999944887888888860------3---88763--5677773024425430788
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHH----HHHHHHHHCC
Q ss_conf 66765574678998899999999765412667408871484207----8999988449
Q gi|254781048|r 82 PRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDA----MVWALQKFSG 135 (320)
Q Consensus 82 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv----~~~~~~~~sg 135 (320)
+-++++++++-+.+.+.+++-+.-=.|- ....+.|.+|
T Consensus 71 ----------------~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~ 112 (255)
T COG1712 71 ----------------EAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGG 112 (255)
T ss_pred ----------------HHHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHCCC
T ss_conf ----------------999998699996599889995122068679999999985389
No 103
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.00 E-value=0.003 Score=41.14 Aligned_cols=67 Identities=21% Similarity=0.304 Sum_probs=46.6
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCC--CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEEC
Q ss_conf 8728998898136899999995799--8699996578812898830762054468875685269748837897899955
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKL--GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTA 79 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l--~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVita 79 (320)
..||++||+|+.|++++..+...++ .++.++|+++++.+-...+. ...+. .+.-+..++||+|+++.
T Consensus 2 m~kI~~IG~G~Mg~Aii~gl~~~~~~~~~i~v~~r~~~~~~~l~~~~---------~v~~~-~~~~~~~~~~diIiLaV 70 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY---------GVRAA-TDNQEAAQEADVVVLAV 70 (267)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHH---------CCEEE-CCHHHHHHCCCEEEEEE
T ss_conf 98799986689999999999977989452899779999999999973---------96785-78698872199999972
No 104
>PRK08251 short chain dehydrogenase; Provisional
Probab=97.00 E-value=0.025 Score=35.15 Aligned_cols=115 Identities=18% Similarity=0.239 Sum_probs=70.5
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEE--ECCCH-----------H
Q ss_conf 9872899889-81368999999957998699996578812898830762054468875685--26974-----------8
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLC--GTSDY-----------S 67 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~--~~~d~-----------~ 67 (320)
++++|-|.|| +.+|..+|..++.++ .+++|.++++++++..+.++....+ +...... -.+|+ +
T Consensus 1 t~K~vlITGAssGIG~alA~~la~~G-~~v~l~~r~~~~l~~~~~el~~~~~--~~~v~~~~~Dvsd~~~v~~~~~~~~~ 77 (248)
T PRK08251 1 TRQKILITGASSGLGAGMAREFAAKG-RDLALCARRTDRLEELKAELLARYP--GIKVAVAALDVNDHDQVFEVFAEFSD 77 (248)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHCC--CCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99989994786399999999999879-9899998988899999999987379--97399997867868999999999999
Q ss_pred HHCCCCEEEEECCCCCC-C-CCC----HHHHHHHHH----HHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 83789789995566667-6-557----467899889----99999997654126674088714
Q gi|254781048|r 68 DIAEADVCIVTAGIPRK-P-SMS----RDDLLADNL----KAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 68 ~l~~aDivVitag~~~~-~-g~~----R~dll~~N~----~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
++..-|++|..||.... + ... -.+.++.|. ...+...+.+.+.+ .|-+++++
T Consensus 78 ~~g~iD~lvnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~m~~~~-~G~Iv~is 139 (248)
T PRK08251 78 ELGGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQG-SGHLVLIS 139 (248)
T ss_pred HHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCEEEEE
T ss_conf 809998999857657886655599999999999982999999999987655405-87299995
No 105
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.99 E-value=0.0034 Score=40.84 Aligned_cols=67 Identities=18% Similarity=0.345 Sum_probs=46.5
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCC-C--EEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEEC
Q ss_conf 8728998898136899999995799-8--699996578812898830762054468875685269748837897899955
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKL-G--DVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTA 79 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l-~--ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVita 79 (320)
++||++||+|+.|++++-.+...+. . ++.+.|++.++.+... + .+...+. ....+.++.+|+|+++.
T Consensus 2 ~kkI~fIG~GnMg~Aii~Gl~~~~~~~~~~i~~~~~~~~~~~~~~----~-----~~~~~~~-~~~~e~~~~~Dii~LaV 71 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNAS----D-----KYGITIT-TNNNEVANSADILILSI 71 (272)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHH----H-----HCCCEEE-CCHHHHHHHCCEEEEEE
T ss_conf 986999856799999999999788989676999697999999999----9-----7197886-68799973199999995
No 106
>pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=96.99 E-value=0.0078 Score=38.47 Aligned_cols=121 Identities=21% Similarity=0.236 Sum_probs=68.0
Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH---HHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCC
Q ss_conf 8998898136899999995799869999657881289883---0762054468875685269748837897899955666
Q gi|254781048|r 6 IALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKAL---DIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIP 82 (320)
Q Consensus 6 V~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~---Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~ 82 (320)
|+|+|+|.+|+.+|..+...+ .++.|+++.+ .++.... .+..........+ .....+.+....+|++++|....
T Consensus 1 I~IiGaGaiG~~~a~~L~~ag-~~V~lv~R~~-~~~~i~~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~viv~vKa~ 77 (150)
T pfam02558 1 IAILGAGAVGSLYGARLARAG-HDVTLIARGR-HLEAIRENGLRITSPGGERTVPP-PVATSASEELGPADLVIVAVKAY 77 (150)
T ss_pred CEEECCCHHHHHHHHHHHHCC-CEEEEEECCC-HHHHHHHCCEEEEECCCCEEEEC-CEECCCHHHCCCCCEEEEEECCC
T ss_conf 999966899999999999779-9289997563-67887749769994798389807-41038657658867999972245
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCC
Q ss_conf 67655746789988999999997654126674088714842078999988449986561100052
Q gi|254781048|r 83 RKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGI 147 (320)
Q Consensus 83 ~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~ 147 (320)
.. ...++.+.+.+ .|++.++..-|=+...-.+. +. ||+++|++--|+
T Consensus 78 ~~------------~~al~~l~~~l---~~~t~iv~lqNG~g~~e~l~-~~--~~~~~v~~gv~~ 124 (150)
T pfam02558 78 QT------------AEALEDLAPLL---GPNTVVLLLQNGLGHEEELR-EA--FPRERVLGGVTT 124 (150)
T ss_pred CH------------HHHHHHHHHHC---CCCCEEEEEECCCCHHHHHH-HH--CCCCCEEEEEEE
T ss_conf 88------------99999988652---88838999425877399999-87--599879999998
No 107
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=96.99 E-value=0.018 Score=36.19 Aligned_cols=103 Identities=14% Similarity=0.172 Sum_probs=66.7
Q ss_pred EEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEE--CCCH----HHHCCCCEEEE
Q ss_conf 2899889-813689999999579986999965788128988307620544688756852--6974----88378978999
Q gi|254781048|r 5 KIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCG--TSDY----SDIAEADVCIV 77 (320)
Q Consensus 5 KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~--~~d~----~~l~~aDivVi 77 (320)
||-|.|+ |.+|++++..++..+. ++..+++.....+. +.. ....... -.|. +.++++|+|+-
T Consensus 2 riLVTGgtGfiG~~l~~~L~~~G~-~V~~l~r~~~~~~~----~~~------~~~~~~~gDl~d~~~~~~~~~~~d~ViH 70 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLERGE-EVRVLVRPTSDRRN----LEG------LDVEIVEGDLRDPASLRKALAGCRALFH 70 (328)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCCHHH----HCC------CCCEEEEEECCCHHHHHHHHHCCCEEEE
T ss_conf 499986777999999999997849-89999899986556----521------7977998207999999999717858976
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 55666676557467899889999999976541266740887
Q gi|254781048|r 78 TAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVIC 118 (320)
Q Consensus 78 tag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~iv 118 (320)
+|+..+....+..+..+.|..--..+.+...+.+-+-++.+
T Consensus 71 ~Aa~~~~~~~~~~~~~~~Nv~gt~nll~aa~~~~v~r~V~~ 111 (328)
T TIGR03466 71 VAADYRLWAPDPEEMYRANVEGTRNLLRAALEAGVERVVYT 111 (328)
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 13423446799899999999999999999997298743156
No 108
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.96 E-value=0.0018 Score=42.70 Aligned_cols=128 Identities=23% Similarity=0.407 Sum_probs=71.0
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 99872899889813689999999579986999965788128988307620544688756852697488378978999556
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
+++.||.|+|+|.+|++++..++.-++..|.|+|-+.- |++ +.+..+. |.+ .|+ |
T Consensus 19 L~~s~VlivG~GGlGs~~~~~La~~Gvg~i~lvD~D~v-------e~s------NLnRQ~l----~~~---~di-----G 73 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV-------ELS------NLQRQIL----HTE---ADV-----G 73 (228)
T ss_pred HHCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCC-------CCC------CCHHHHE----ECH---HHC-----C
T ss_conf 86497899887788999999999839975899978745-------567------6422102----378---668-----7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHH-HCCCCHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 6667655746789988999999997654126674088714842078999988-449986561100052568999999999
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQK-FSGLPSHMVVGMAGILDSARFRYFLAQ 159 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~-~sg~~~~rViG~Gt~LDs~R~~~~ia~ 159 (320)
. .+. ....+++.+.+|+.-+-...-.+|.-. +.+ ..+++ =|+- -+|+.+.|+.+.+
T Consensus 74 ~------~K~----------~~a~~~l~~iNp~i~i~~~~~~i~~~~--~~~~~~~~D--lVid---~~Dn~~~R~~ln~ 130 (228)
T cd00757 74 Q------PKA----------EAAAERLRAINPDVEIEAYNERLDAEN--AEELIAGYD--LVLD---CTDNFATRYLIND 130 (228)
T ss_pred C------CHH----------HHHHHHHHHHCCCCCCEEHHHCCCHHH--HHHHHHCCC--EEEE---CCCCHHHHHHHHH
T ss_conf 8------959----------999999985488753031321005756--998873798--9998---7799889999999
Q ss_pred ---HCCCCCCCCEEEEECCCCC
Q ss_conf ---7198733550567507885
Q gi|254781048|r 160 ---EFGVSVESVTALVLGSHGD 178 (320)
Q Consensus 160 ---~l~v~~~~V~~~ViGeHGd 178 (320)
+.+++ -|++-+.|-+|-
T Consensus 131 ~~~~~~iP--~i~g~~~g~~Gq 150 (228)
T cd00757 131 ACVKLGKP--LVSGAVLGFEGQ 150 (228)
T ss_pred HHHHCCCC--EEEEEECCCEEE
T ss_conf 99983998--899974002868
No 109
>PRK06545 prephenate dehydrogenase; Validated
Probab=96.96 E-value=0.007 Score=38.78 Aligned_cols=66 Identities=21% Similarity=0.248 Sum_probs=43.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCC-EEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEEEC
Q ss_conf 7289988981368999999957998-69999657881289883076205446887568526974-8837897899955
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLG-DVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIVTA 79 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~-ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVita 79 (320)
++|.|||.|.+|+++|..+...+.. .++=+|+++.. ...+ ++.. .......+. +.+++||+||++.
T Consensus 1 k~V~IiGlGLIGgSlalalk~~g~~~~i~~~d~~~~~-l~~A--~~~g-------~id~~~~~~~~~~~~~DlVvlat 68 (357)
T PRK06545 1 KTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSGAQ-LARA--LGFG-------VIDELAEDLARAAAEADLIVLAV 68 (357)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCCEEEEEECCCHHH-HHHH--HHCC-------CCCEECCCHHHHCCCCCEEEECC
T ss_conf 9799997787899999999854997699996699999-9999--8689-------97730488767156799999949
No 110
>KOG2304 consensus
Probab=96.94 E-value=0.0037 Score=40.56 Aligned_cols=107 Identities=21% Similarity=0.307 Sum_probs=66.5
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHH----HHHHHHHHHCCCCCC-------------CCEEEECCC
Q ss_conf 872899889813689999999579986999965788128----988307620544688-------------756852697
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPR----GKALDIAESSPVEGF-------------GAQLCGTSD 65 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~----g~~~Dl~~~~~~~~~-------------~~~v~~~~d 65 (320)
.+-|+|+|+|+.|+-+|...+..++ ++.|+|.+++.+. |...-+.+.+.-... -.++..+++
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~-~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn 89 (298)
T KOG2304 11 IKNVAIVGAGQMGSGIAQVAATSGL-NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN 89 (298)
T ss_pred CCCEEEECCCCCCHHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 6624787566432039999885199-469854777899999999999999998621367715678899999999987177
Q ss_pred H-HHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHH
Q ss_conf 4-88378978999556666765574678998899999999765412667408871484207
Q gi|254781048|r 66 Y-SDIAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDA 125 (320)
Q Consensus 66 ~-~~l~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv 125 (320)
. +.+.|||++| +-.-+|.+|-+++-+.+.+.|+.. -|.+||-.-.
T Consensus 90 v~~~v~dadlii--------------EAivEn~diK~~lF~~l~~~ak~~-~il~tNTSSl 135 (298)
T KOG2304 90 VSDAVSDADLII--------------EAIVENLDIKRKLFKDLDKIAKSS-TILATNTSSL 135 (298)
T ss_pred HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHCCCC-EEEEECCCCE
T ss_conf 777642367999--------------999874778999999998446656-2886256524
No 111
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=96.94 E-value=0.0097 Score=37.87 Aligned_cols=122 Identities=13% Similarity=0.128 Sum_probs=70.0
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCC--EEE-EEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHH-HCCCCEEEE
Q ss_conf 987289988981368999999957998--699-9965788128988307620544688756852697488-378978999
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLG--DVV-LLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSD-IAEADVCIV 77 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~--ei~-L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~-l~~aDivVi 77 (320)
++-||+|||.|++|+.++..+..+ +. +|. .+|+++++.+.....+.. ...+ .+.++ ...+|+||-
T Consensus 5 ~kmrVgliG~GaIG~~va~~l~~g-~~~~~l~~V~~r~~~~~~~~~~~~~~-------~~~~---~~~~~l~~~~DlVVE 73 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRG-LPGLTLSAVAVRDPQRHADFIWGLRR-------PPPV---VPLDQLATHADIVVE 73 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCC-CCCCEEEEEECCCHHHHHHHHHHCCC-------CCCC---CCHHHHHHCCCEEEE
T ss_conf 667799988678999999999758-99818999992887888999873589-------8740---788996018999998
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHH-HHHHHHHHCCCCHHHHH-HHC--CCHHHHHH
Q ss_conf 556666765574678998899999999765412667408871484207-89999884499865611-000--52568999
Q gi|254781048|r 78 TAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDA-MVWALQKFSGLPSHMVV-GMA--GILDSARF 153 (320)
Q Consensus 78 tag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv-~~~~~~~~sg~~~~rVi-G~G--t~LDs~R~ 153 (320)
+||. ..++++++++-..+-+-+++-++-=.|- -..-..+.+| .|++ -+| .-||-.|.
T Consensus 74 ~A~~----------------~av~~~~~~~L~~G~dlvv~SvGALad~~~l~~~A~~~g---~~i~ipsGAigGlD~l~a 134 (271)
T PRK13302 74 AAPA----------------SVLRAIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNG---GQIIVPTGALLGLDAVTA 134 (271)
T ss_pred CCCH----------------HHHHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHCC---CEEEEECCHHHHHHHHHH
T ss_conf 9898----------------999999999997599789975579569299999999669---859980703434789999
No 112
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.93 E-value=0.001 Score=44.17 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=73.0
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 99872899889813689999999579986999965788128988307620544688756852697488378978999556
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
+++.||.|||+|.+|+++++.++.-++.+|.|+|-+.- |++ +.+-.+. |. ..|+ |
T Consensus 30 L~~s~VlivG~GGlG~~~~~~La~aGvg~i~lvD~D~v-------e~s------NLnRQ~l----~~---~~di-----G 84 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAAAQYLAAAGVGTLTLVDFDTV-------SLS------NLQRQVL----HD---DATI-----G 84 (245)
T ss_pred HHHCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCC-------CCC------CHHHHHC----CC---HHHC-----C
T ss_conf 97197899877777899999999859965999968867-------888------6788864----59---8778-----9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 66676557467899889999999976541266740887148420789999884499865611000525689999999997
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQE 160 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~ 160 (320)
+.+.+ ...+++.+.+|+.-+-.+...++.-. +..-.++++ =|| .-+|+...|+.+.+.
T Consensus 85 ------~~Kv~----------~a~~~l~~inp~i~i~~~~~~i~~~n-~~~li~~~D--lVi---D~~Dn~~~R~~ln~~ 142 (245)
T PRK05690 85 ------QPKVE----------SAKAALARINPHIAIETINARLDDDE-LAALIAAHD--LVL---DCTDNVATRNQLNAA 142 (245)
T ss_pred ------CCHHH----------HHHHHHHHHCCCCCEEEEHHCCCHHH-HHHHHHCCC--EEE---ECCCCHHHHHHHHHH
T ss_conf ------88799----------99999997588752263331448889-988750788--899---878999999999999
Q ss_pred CCCC-CCCCEEEEECCCCCE
Q ss_conf 1987-335505675078852
Q gi|254781048|r 161 FGVS-VESVTALVLGSHGDS 179 (320)
Q Consensus 161 l~v~-~~~V~~~ViGeHGds 179 (320)
--.. ..-|++-+.|-+|--
T Consensus 143 c~~~~~P~v~g~~~g~~Gqv 162 (245)
T PRK05690 143 CFAAKKPLVSGAAIRMEGQV 162 (245)
T ss_pred HHHCCCCEEEEEEEEEEEEE
T ss_conf 99719987987788658999
No 113
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.91 E-value=0.0094 Score=37.97 Aligned_cols=128 Identities=17% Similarity=0.178 Sum_probs=67.7
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHH-H-CCCCEEEEE
Q ss_conf 99872899889813689999999579986999965788128988307620544688756852697488-3-789789995
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSD-I-AEADVCIVT 78 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~-l-~~aDivVit 78 (320)
.|.+||.|+|.|.-|.++|..+..++ .++...|..+.........|.. ...++....+..+ + .+.|+||.+
T Consensus 7 ~~~k~i~viGlG~sG~s~a~~L~~~G-~~V~~~D~~~~~~~~~~~~l~~------~gi~~~~g~~~~~~~~~~~d~vV~S 79 (450)
T PRK02472 7 FQNKKVLVLGLAKSGYAAAKLLHKLG-ANVTVNDGKPFSENPAAQELLE------EGIKVICGSHPLELLDENFDLMVKN 79 (450)
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCCCCCHHHHHHHH------CCCEEEECCCHHHHCCCCCCEEEEC
T ss_conf 58998999977899999999999886-9899984886657989999996------7998997888078605788799989
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE--CCCCHH---HHHHHHHHCCCCH
Q ss_conf 56666765574678998899999999765412667408871--484207---8999988449986
Q gi|254781048|r 79 AGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICI--TNPLDA---MVWALQKFSGLPS 138 (320)
Q Consensus 79 ag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~~ 138 (320)
.|.|...- --....+.+.+++.++- -..+. .++.+|-| ||==-+ |...+.+..|++.
T Consensus 80 PgI~~~~p-~~~~a~~~~i~v~~~~e-l~~~~-~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~ 141 (450)
T PRK02472 80 PGIPYDNP-MVEEALEKGIPIITEVE-LAYLI-SEAPIIGITGSNGKTTTTTLIAEMLNAGGQHG 141 (450)
T ss_pred CCCCCCCH-HHHHHHHCCCCEEEHHH-HHHHH-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 98799999-99999986996743878-88875-15978998279997319999999999749973
No 114
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.89 E-value=0.0066 Score=38.94 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=53.2
Q ss_pred CCEEEEECCCCHHHH-HHHHHHHC-CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEEEC
Q ss_conf 872899889813689-99999957-99869999657881289883076205446887568526974-8837897899955
Q gi|254781048|r 3 SNKIALIGSGMIGGT-LAHLAVLK-KLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIVTA 79 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~-~a~~~~~~-~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVita 79 (320)
.+.++|||+|..+.+ +..++... .+.++.++|+++++++..+..+.... +....+....+. +++++||||+.+.
T Consensus 155 a~~lgiIG~G~qAr~~l~Al~~vrp~i~~V~V~~r~~~~a~~fa~~~~~~~---~~~~~v~~~~s~eeav~~aDIVvtaT 231 (379)
T PRK06199 155 AKVVGLVGPGVMGKTIVAAFMAVCPGIDTIKIKGRSQKSLDAFATWVAETY---PQITEVVVVDSEEEVVRGSDIVTYCT 231 (379)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHC---CCCCEEEEECCHHHHHHCCCEEEECC
T ss_conf 978999896399999999999861788889998899999999999999766---88850898299999973799999777
Q ss_pred C
Q ss_conf 6
Q gi|254781048|r 80 G 80 (320)
Q Consensus 80 g 80 (320)
.
T Consensus 232 s 232 (379)
T PRK06199 232 S 232 (379)
T ss_pred C
T ss_conf 7
No 115
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.89 E-value=0.0034 Score=40.87 Aligned_cols=70 Identities=10% Similarity=0.267 Sum_probs=45.7
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCC---CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEE
Q ss_conf 998728998898136899999995799---86999965788128988307620544688756852697488378978999
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKL---GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIV 77 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l---~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVi 77 (320)
|+..||++||+|+.|++++..+...+. .++.+.++.... ....+... +...+. .+.-+.+++||+|++
T Consensus 1 m~mm~I~fIG~GnMg~Aii~gl~~~~~~~~~~i~v~~r~~~~---~~~~l~~~-----~~v~~~-~~~~~~~~~~diI~L 71 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNET---RLQELHQK-----YGVKGT-HNKKELLTDANILFL 71 (279)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHH---HHHHHHHH-----HCCEEE-CCHHHHHHHCCEEEE
T ss_conf 997889998768999999999997879997579997898499---99999997-----196663-777999844999999
Q ss_pred EC
Q ss_conf 55
Q gi|254781048|r 78 TA 79 (320)
Q Consensus 78 ta 79 (320)
+.
T Consensus 72 aV 73 (279)
T PRK07679 72 AM 73 (279)
T ss_pred EC
T ss_conf 52
No 116
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.88 E-value=0.0029 Score=41.30 Aligned_cols=100 Identities=16% Similarity=0.128 Sum_probs=67.0
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCC-HHHHCCCCEEEEECC
Q ss_conf 9872899889813689999999579986999965788128988307620544688756852697-488378978999556
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSD-YSDIAEADVCIVTAG 80 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d-~~~l~~aDivVitag 80 (320)
..+||.|||+|..|..++-.+...++.++.+..++.++++..+-.+... ....-.+ ++.+.++|+||.+.|
T Consensus 180 ~~~~vlvvGaGem~~l~~k~L~~~g~~~i~v~nRt~~ra~~la~~~~~~--------~~~~~~~l~~~l~~aDivisaT~ 251 (414)
T PRK13940 180 SSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNA--------SAHYLSELPQLIKKADIIIAAVN 251 (414)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCC--------CCCCHHHHHHHHHHCCEEEEECC
T ss_conf 2283899668647899999999769987999457567799999970888--------50169999999863887998169
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHH
Q ss_conf 66676557467899889999999976541266740887148420789
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMV 127 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~ 127 (320)
.|. |-.++..+ . ..|- +++=++.|-|+=.
T Consensus 252 a~~-~ii~~~~~---------------~-~~p~-~~iDLavPRdidp 280 (414)
T PRK13940 252 VLE-YIVTCKYV---------------G-DKPR-VFIDISIPQALDP 280 (414)
T ss_pred CCH-HHCCHHHH---------------C-CCCE-EEEEECCCCCCCH
T ss_conf 824-44048664---------------5-7975-8998458888884
No 117
>PRK08324 short chain dehydrogenase; Validated
Probab=96.86 E-value=0.0085 Score=38.26 Aligned_cols=112 Identities=21% Similarity=0.286 Sum_probs=69.5
Q ss_pred EEEEE-C-CCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHH-----------HCC
Q ss_conf 28998-8-9813689999999579986999965788128988307620544688756852697488-----------378
Q gi|254781048|r 5 KIALI-G-SGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSD-----------IAE 71 (320)
Q Consensus 5 KV~II-G-aG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~-----------l~~ 71 (320)
||++| | +|.+|.++|..++..+. ++++.|+++++++..+.++............ .+|.++ +-+
T Consensus 422 KVALVTGga~GIG~A~A~~fa~eGA-~Vvl~D~~~~~l~~~a~el~~~~~~~~~~~D---Vtd~~~v~~~v~~~~~~fGg 497 (676)
T PRK08324 422 KVALVTGAAGGIGLATAKRLAAEGA-CVVLADIDEEAAEAAAAELGGRDRALGVACD---VTDEAAVQAAFEEAALAFGG 497 (676)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHCCCCEEEEEEC---CCCHHHHHHHHHHHHHHHCC
T ss_conf 8799947988162999999998799-8999958889999999997079947999806---89999999999999998599
Q ss_pred CCEEEEECCCCCCCCC--CHHH----HHHHH----HHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 9789995566667655--7467----89988----999999997654126674088714
Q gi|254781048|r 72 ADVCIVTAGIPRKPSM--SRDD----LLADN----LKAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 72 aDivVitag~~~~~g~--~R~d----ll~~N----~~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
-|++|..||.+..... .-.+ .+..| -...+...+.+++.+..|.++.++
T Consensus 498 IDiLVnNAGi~~~~~~~e~s~e~w~~~~~vNl~g~f~~~r~a~p~M~~qg~GG~IV~is 556 (676)
T PRK08324 498 VDIVVSNAGIALSGPIGETSDELWRRSFEVNFTGHFLVAREAVRIMKAQGTGGNLVFIA 556 (676)
T ss_pred CCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 88899767778998826599999999998860999999999999999769991999982
No 118
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.84 E-value=0.006 Score=39.25 Aligned_cols=74 Identities=19% Similarity=0.281 Sum_probs=47.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEEEC
Q ss_conf 98728998898136899999995799869999657881289883076205446887568526974-8837897899955
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIVTA 79 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVita 79 (320)
+..|+.|+|+|..+.++++.+...+..++.+++++.++++..+.++.... + ...+....+. +.+.++|++|-|.
T Consensus 126 ~~~~vlilGaGGaa~ai~~al~~~g~~~i~I~nR~~~r~~~l~~~l~~~~---~-~~~~~~~~~~~~~~~~~d~iINaT 200 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTLFDVDPARAQALADELNARF---P-AARVTAGSDLAAALAAADGLVHAT 200 (284)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHC---C-CCEEEECHHHHHHHHHCCEEEECC
T ss_conf 55718996566168999999997699989999798899999999998657---9-863764167676542138266578
No 119
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.81 E-value=0.0052 Score=39.63 Aligned_cols=128 Identities=18% Similarity=0.232 Sum_probs=70.5
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 99872899889813689999999579986999965788128988307620544688756852697488378978999556
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
+++.||.|||+|.+|+.++..++.-++..|.|+|-+. ++ .++-... -|.. .|+ |
T Consensus 25 L~~s~VlivG~GGLG~~~a~~La~aGVG~i~lvD~D~---------Ve------~SNL~RQ---~~~~---~di-----G 78 (209)
T PRK08644 25 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV---------VE------PSNLNRQ---QYFI---SQI-----G 78 (209)
T ss_pred HHCCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCE---------EC------CCCCCCC---CCCH---HHC-----C
T ss_conf 9629689988878899999999993898189988999---------01------5411037---5678---775-----9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHH-HHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 66676557467899889999999976541266740887148420789-99988449986561100052568999999999
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMV-WALQKFSGLPSHMVVGMAGILDSARFRYFLAQ 159 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~-~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~ 159 (320)
.| + +....+++.+.+|+..+-.+...+|--. ..+. .+++ =|+ --+|+...|++|.+
T Consensus 79 ~~------K----------a~~a~~~l~~iNp~v~I~~~~~~l~~~n~~~l~--~~~D--iVi---DctDN~~tR~li~~ 135 (209)
T PRK08644 79 MF------K----------VEALKENLLRINPFVKIEVHQVKIDEDNIEELF--KDCD--IVV---EAFDNAETKAMLVE 135 (209)
T ss_pred CC------H----------HHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHH--HCCC--EEE---ECCCCHHHHHHHHH
T ss_conf 75------6----------999999987448982899972248989999998--5799--999---99999999999999
Q ss_pred HCC--CCCCCCEEEEECCCC
Q ss_conf 719--873355056750788
Q gi|254781048|r 160 EFG--VSVESVTALVLGSHG 177 (320)
Q Consensus 160 ~l~--v~~~~V~~~ViGeHG 177 (320)
..- ....-|.+-.++.+|
T Consensus 136 ~c~~~~~~plV~as~i~g~g 155 (209)
T PRK08644 136 TVLEKKGKKVVSASGMAGYG 155 (209)
T ss_pred HHHHHCCCCEEEEEEEEEEC
T ss_conf 99997799689996121575
No 120
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.81 E-value=0.041 Score=33.79 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=17.2
Q ss_pred CCEEEEECC--CCHHHHHHHHHHH--CCCC-EEEEEECCCCC
Q ss_conf 872899889--8136899999995--7998-69999657881
Q gi|254781048|r 3 SNKIALIGS--GMIGGTLAHLAVL--KKLG-DVVLLDIVDGM 39 (320)
Q Consensus 3 ~~KV~IIGa--G~VG~~~a~~~~~--~~l~-ei~L~D~~~~~ 39 (320)
++..++||- ++--+..-|-... .++. ....+|+.++.
T Consensus 9 T~~~gviG~PI~hSlSP~ihn~~~~~~gi~~~Y~~~~v~~~~ 50 (289)
T PRK12548 9 TGLLGLIGTPVGHSKSPAMYNYSFQKAGLDYAYLAFDVPKEK 50 (289)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHH
T ss_conf 149999788801022499999999986999299978778889
No 121
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=96.81 E-value=0.01 Score=37.73 Aligned_cols=71 Identities=23% Similarity=0.345 Sum_probs=46.1
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEE
Q ss_conf 9872899889-81368999999957--99869999657881289883076205446887568526974883789789995
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLK--KLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVT 78 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~--~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVit 78 (320)
+..+|+|+|| |.||+.+..+|..+ ++.++.++.-. +..|+... |.+....+.... ..+.+++|+++++
T Consensus 3 ~~~~VaivGATG~VGq~~l~lL~e~~fp~~~l~~laS~--~SaGk~i~------~~~~~~~v~~~~-~~~~~~~di~ff~ 73 (337)
T PRK08040 3 EGWNIALLGATGAVGEALLETLAERQFPVGEIYALARE--ESAGETLR------FGGKSITVQDAA-EFDWTQAQLAFFV 73 (337)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECC--CCCCCEEE------ECCCEEEEEECC-CCCCCCCCEEEEC
T ss_conf 99879998885088999999997179981359999888--88997777------899188999777-0332469889991
Q ss_pred CCC
Q ss_conf 566
Q gi|254781048|r 79 AGI 81 (320)
Q Consensus 79 ag~ 81 (320)
+|.
T Consensus 74 a~~ 76 (337)
T PRK08040 74 AGK 76 (337)
T ss_pred CCC
T ss_conf 771
No 122
>pfam03435 Saccharop_dh Saccharopine dehydrogenase. This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase.
Probab=96.80 E-value=0.0059 Score=39.29 Aligned_cols=72 Identities=21% Similarity=0.238 Sum_probs=47.7
Q ss_pred EEEECCCCHHHHHHHHHHHC-CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHH----HHCCCCEEEEECC
Q ss_conf 89988981368999999957-998699996578812898830762054468875685269748----8378978999556
Q gi|254781048|r 6 IALIGSGMIGGTLAHLAVLK-KLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYS----DIAEADVCIVTAG 80 (320)
Q Consensus 6 V~IIGaG~VG~~~a~~~~~~-~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~----~l~~aDivVitag 80 (320)
|.|+|+|.||+.++..++.. ...++++.|++.++++..+.... .. ..........|++ .++++|+||-+++
T Consensus 1 IlvlGaG~vG~~~~~~L~~~~~~~~i~vad~~~~~~~~~~~~~~-~~---~~~~~~~d~~~~~~l~~~~~~~diVv~~~p 76 (384)
T pfam03435 1 VLIIGAGGVGQGVAPLLARHGDVDEITVADRSLEKAQALAAPKL-GL---RFIAIAVDADNYEALAALLKEGDLVINLAP 76 (384)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCC-CC---CEEEEEECCCCHHHHHHHHHCCCEEEECCC
T ss_conf 98989778799999999728998869999898899898775236-98---538999577899999998712899999984
Q ss_pred C
Q ss_conf 6
Q gi|254781048|r 81 I 81 (320)
Q Consensus 81 ~ 81 (320)
.
T Consensus 77 ~ 77 (384)
T pfam03435 77 P 77 (384)
T ss_pred H
T ss_conf 3
No 123
>PRK07680 late competence protein ComER; Validated
Probab=96.80 E-value=0.0045 Score=40.05 Aligned_cols=67 Identities=10% Similarity=0.161 Sum_probs=45.0
Q ss_pred EEEEECCCCHHHHHHHHHHHCC-C--CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 2899889813689999999579-9--86999965788128988307620544688756852697488378978999556
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKK-L--GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~-l--~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
||++||+|+.|++++..+...+ + .++.++|+++++........ + ...+. .+..+.+++||+|+++.-
T Consensus 2 kI~fIG~GnMg~Aii~gl~~~~~~~~~~i~i~~r~~~~~~~l~~~~-------~-~i~~~-~~~~~~~~~~dvIiLaVK 71 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESRAVKPSCLTITNRTPAKAYHIKEKY-------P-SIHVA-KTIEEVIEQSELIFICVK 71 (273)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHC-------C-CEEEE-CCHHHHHHCCCEEEEECC
T ss_conf 8999876999999999999779989456999889989999999876-------9-90886-888999840998999648
No 124
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.78 E-value=0.0013 Score=43.54 Aligned_cols=66 Identities=30% Similarity=0.388 Sum_probs=43.9
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHH-----HCCCCEEEEE
Q ss_conf 2899889813689999999579986999965788128988307620544688756852697488-----3789789995
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSD-----IAEADVCIVT 78 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~-----l~~aDivVit 78 (320)
||.|+|+|.||+++|-.+...+. +++++|.++++++-....+ |.....+ ..++++- .++||++|-.
T Consensus 2 ~IiI~GaG~vG~~La~~Ls~e~~-dV~vID~d~~~~~~~~~~l-Dv~~i~G------d~~~~~~L~~Agi~~ad~~IAv 72 (455)
T PRK09496 2 KIIILGAGQVGGTLAERLVGENN-DVTVIDTDEERLRRLQDRL-DVRTVVG------NGSHPDVLREAGAEDADMLIAV 72 (455)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHC-CEEEEEE------CCCCHHHHHHCCCCCCCEEEEE
T ss_conf 79999988899999999986899-7999989999999988625-8689996------6899999996599869999995
No 125
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=96.76 E-value=0.048 Score=33.35 Aligned_cols=117 Identities=22% Similarity=0.261 Sum_probs=71.8
Q ss_pred CEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCC---CCCCCEEEECCCH--------HHHC
Q ss_conf 728998-89-813689999999579986999965788128988307620544---6887568526974--------8837
Q gi|254781048|r 4 NKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPV---EGFGAQLCGTSDY--------SDIA 70 (320)
Q Consensus 4 ~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~---~~~~~~v~~~~d~--------~~l~ 70 (320)
+|+++| |+ +.+|..+|..++..+ +.+++.|++.++++..+.++...... ......+....+. +.+.
T Consensus 2 nKvalITG~s~GIG~aia~~la~~G-a~V~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 80 (259)
T PRK12384 2 NKVAVVIGGGQTLGAFLCHGLAEEG-YRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 9789994688689999999999879-999999798899999999998624886089998327999999999999999829
Q ss_pred CCCEEEEECCCCCCCC---CCH---HHHHHHHH----HHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 8978999556666765---574---67899889----999999976541266740887148
Q gi|254781048|r 71 EADVCIVTAGIPRKPS---MSR---DDLLADNL----KAIEKVGAGIRKYAPNSFVICITN 121 (320)
Q Consensus 71 ~aDivVitag~~~~~g---~~R---~dll~~N~----~i~~~i~~~i~~~~p~~i~ivvtN 121 (320)
.-|++|..||...... .+. ...+..|. .+.+...+.+.+....|.++.++-
T Consensus 81 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~G~Iv~isS 141 (259)
T PRK12384 81 RVDLLVYSAGIAKAAKITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINS 141 (259)
T ss_pred CCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9719998997778899145999999999998864422346776368997389845999835
No 126
>PRK08223 hypothetical protein; Validated
Probab=96.76 E-value=0.0015 Score=43.21 Aligned_cols=149 Identities=17% Similarity=0.232 Sum_probs=80.2
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 99872899889813689999999579986999965788128988307620544688756852697488378978999556
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
+++.||.|+|+|.+|+.++..++.-++..+.|+|-+.- |++ +.+-.+. .+. .|+ |
T Consensus 25 L~~s~VlVvG~GGlGs~~a~~LAraGVG~i~lvD~D~v-------elS------NLnRQi~-~~~------~di-----G 79 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGVHLLTLARLGIGKFNIADFDVF-------ELV------NSNRQYG-AMM------SSN-----G 79 (287)
T ss_pred HHCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCC-------CCC------CCCHHHC-CCH------HHC-----C
T ss_conf 85596899936755799999999828975999749984-------634------4022234-474------344-----9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHH-HHHHHHHHCCCCHHHHHHHCC--CHHHHHHHHHH
Q ss_conf 666765574678998899999999765412667408871484207-899998844998656110005--25689999999
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDA-MVWALQKFSGLPSHMVVGMAG--ILDSARFRYFL 157 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv-~~~~~~~~sg~~~~rViG~Gt--~LDs~R~~~~i 157 (320)
.| . +....+++.+.+|+.-+-.....++. +...+. .|++ =|+---- .+|+-|+-.--
T Consensus 80 ~~------K----------veva~e~l~~INP~v~V~~~~~~lt~~N~~~~l--~~~D--vVvDg~DnF~~~tR~ll~~a 139 (287)
T PRK08223 80 RP------K----------VEVMREIALDINPELEIRAFPEGIGKENLDTFL--DGVD--VYVDGLDFFVFDIRRLLFRE 139 (287)
T ss_pred CC------H----------HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH--HCCC--EEEECCCCCCHHHHHHHHHH
T ss_conf 85------8----------999999999869898799958789989999998--6799--99979667883189999999
Q ss_pred HHHCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCC
Q ss_conf 99719873355056750788524651023544770155430015
Q gi|254781048|r 158 AQEFGVSVESVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKLG 201 (320)
Q Consensus 158 a~~l~v~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~ 201 (320)
+..+|++ -|++-++|- +.|+-+| ..+|.++.+|....
T Consensus 140 c~~~giP--~v~~a~l~f--~gq~~vF---~P~g~~f~~yf~~~ 176 (287)
T PRK08223 140 AQARGIP--ALTAAPLGF--STAWLVF---DPGGMSFDRYFDLS 176 (287)
T ss_pred HHHHCCC--EEEECCCCC--CCEEEEE---CCCCCCHHHHCCCC
T ss_conf 9985998--498315410--3069998---89997898845899
No 127
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=96.76 E-value=0.0088 Score=38.15 Aligned_cols=35 Identities=23% Similarity=0.471 Sum_probs=31.5
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 87289988981368999999957998699996578
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
..||.|+|+|.+|+.++..++..++.+|.|+|-+.
T Consensus 1 ~skVlivG~GglG~~~~~~La~~Gvg~i~lvD~D~ 35 (134)
T pfam00899 1 SSRVLVVGAGGLGSPAAEYLARAGVGKLTLVDFDT 35 (134)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 98899989888999999999993897499998956
No 128
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.75 E-value=0.0028 Score=41.33 Aligned_cols=36 Identities=22% Similarity=0.458 Sum_probs=32.2
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 998728998898136899999995799869999657
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIV 36 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~ 36 (320)
+++.||.|||+|.+|++++..++.-++.+|.|+|.+
T Consensus 22 L~~s~VlIVGaGGLGs~~a~~La~aGVG~l~ivD~D 57 (337)
T PRK12475 22 IREKHVLIIGAGALGAANAEALVRAGIGKLTIADRD 57 (337)
T ss_pred HHCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 863969999777778999999998289869998499
No 129
>PRK06141 ornithine cyclodeaminase; Validated
Probab=96.74 E-value=0.0097 Score=37.87 Aligned_cols=76 Identities=20% Similarity=0.344 Sum_probs=51.8
Q ss_pred CCEEEEECCCCHHHHHHH-HHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEEECC
Q ss_conf 872899889813689999-9995799869999657881289883076205446887568526974-88378978999556
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAH-LAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIVTAG 80 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~-~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVitag 80 (320)
.+.++|||+|.-+.+... ++...++.++.++++++++++..+.++... +.. +....+. +++++||||+ |+-
T Consensus 125 ~~~l~iiG~G~QA~~~l~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~----~~~--~~~~~~~~~av~~aDII~-taT 197 (313)
T PRK06141 125 ARRLLVVGTGRLASLLALAHASVRPIKQVRVWGRNPAKAAALAAELREQ----GFD--AEVVTDLEAAVRQADIIS-CAT 197 (313)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHC----CCC--EEEECCHHHHHHHCCEEE-ECC
T ss_conf 7679997788999999999997289758999938989999999999850----997--599589999861087799-716
Q ss_pred CCCCC
Q ss_conf 66676
Q gi|254781048|r 81 IPRKP 85 (320)
Q Consensus 81 ~~~~~ 85 (320)
..+.|
T Consensus 198 ~s~~P 202 (313)
T PRK06141 198 LSTEP 202 (313)
T ss_pred CCCCC
T ss_conf 88986
No 130
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.74 E-value=0.011 Score=37.55 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=52.7
Q ss_pred CCEEEEECCCCHHHHHHH-HHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHH-HCCCCEEEEECC
Q ss_conf 872899889813689999-999579986999965788128988307620544688756852697488-378978999556
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAH-LAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSD-IAEADVCIVTAG 80 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~-~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~-l~~aDivVitag 80 (320)
.+.++|||+|..+..... ++...++.++.++|+++++++..+.++..- . ...+....+.++ +++||||+.+..
T Consensus 127 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~~~~f~~~~~~~---~--g~~v~~~~~~~~av~~aDiV~taT~ 201 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDIEKVRVYSRTFEKAYAFAQEIQSK---F--NTEIYVVESADEAIEEADIIVTVTN 201 (325)
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHH---C--CCCEEEECCHHHHHHHCCEEEEECC
T ss_conf 8569997560799999999986089668999947999999999999875---0--9966995899999843988999259
No 131
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.70 E-value=0.015 Score=36.70 Aligned_cols=129 Identities=19% Similarity=0.214 Sum_probs=72.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEC-CC-HHHHCC-CCEEEEEC
Q ss_conf 8728998898136899999995799869999657881289883076205446887568526-97-488378-97899955
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGT-SD-YSDIAE-ADVCIVTA 79 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~-~d-~~~l~~-aDivVita 79 (320)
-.||+|+|+|.+|......+...+ ++++-+|+.++|.+ .++.| +-...+... .| .+++++ +|+++.|+
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e-~a~~l-------GAd~~i~~~~~~~~~~~~~~~d~ii~tv 237 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLE-LAKKL-------GADHVINSSDSDALEAVKEIADAIIDTV 237 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHH-HHHHH-------CCCEEEECCCCHHHHHHHHHCCEEEECC
T ss_conf 989999877489999999999869-96999957877999-99984-------8828997678116677673473999987
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC-HHHHHH-HHHHCCCCHHHHHHH--CCCHHHHHHHH
Q ss_conf 66667655746789988999999997654126674088714842-078999-988449986561100--05256899999
Q gi|254781048|r 80 GIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPL-DAMVWA-LQKFSGLPSHMVVGM--AGILDSARFRY 155 (320)
Q Consensus 80 g~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPv-Dv~~~~-~~~~sg~~~~rViG~--Gt~LDs~R~~~ 155 (320)
+ +.. +....+.+ .+.|.++.+.+|- .-+..+ +... -+...+|.|+ ||.-|+.-+-.
T Consensus 238 ~-~~~---------------~~~~l~~l---~~~G~~v~vG~~~~~~~~~~~~~~l-i~~~~~i~GS~~g~~~d~~e~l~ 297 (339)
T COG1064 238 G-PAT---------------LEPSLKAL---RRGGTLVLVGLPGGGPIPLLPAFLL-ILKEISIVGSLVGTRADLEEALD 297 (339)
T ss_pred C-HHH---------------HHHHHHHH---HCCCEEEEECCCCCCCCCCCCHHHH-HHCCCEEEEEECCCHHHHHHHHH
T ss_conf 7-455---------------99999986---4297899978888766666787786-32670899972489999999999
Q ss_pred HHHHH
Q ss_conf 99997
Q gi|254781048|r 156 FLAQE 160 (320)
Q Consensus 156 ~ia~~ 160 (320)
|.++.
T Consensus 298 f~~~g 302 (339)
T COG1064 298 FAAEG 302 (339)
T ss_pred HHHHC
T ss_conf 99818
No 132
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.68 E-value=0.054 Score=33.03 Aligned_cols=36 Identities=17% Similarity=0.369 Sum_probs=19.4
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 872899889813689999999579986999965788
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDG 38 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~ 38 (320)
.+++.|+|+|..+.++++.+...++.++.++++++.
T Consensus 124 ~k~~lIlGaGGaa~Ai~~~l~~~g~~~i~i~nR~~~ 159 (288)
T PRK12749 124 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf 776899823458899999999769987999968855
No 133
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=96.68 E-value=0.06 Score=32.73 Aligned_cols=182 Identities=14% Similarity=0.184 Sum_probs=86.2
Q ss_pred CEEEEEC-CCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH--HHHCCCCEEEEECC
Q ss_conf 7289988-98136899999995799869999657881289883076205446887568526974--88378978999556
Q gi|254781048|r 4 NKIALIG-SGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY--SDIAEADVCIVTAG 80 (320)
Q Consensus 4 ~KV~IIG-aG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~--~~l~~aDivVitag 80 (320)
+||-|.| +|.+|++++..++..+--+++.+|...++... ..+..... +. ...+....++ ..++++|+|+-.|+
T Consensus 2 KkILVTGgaGFIGs~Lv~~Ll~~~~~~V~~~d~~~~~~~~-~~~~~~~~-~~--~gDi~~~~~~~~~~~~~~D~V~HlAa 77 (347)
T PRK11908 2 KKVLILGVNGFIGHHLTKRILETTDWEVYGMDMQTDRLGD-LVNHPRMH-FF--EGDITINKEWIEYHVKKCDVVLPLVA 77 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHH-HCCCCCEE-EE--ECCCCCCHHHHHHHHCCCCEEEEEHH
T ss_conf 8899975743899999999998289789999799763677-55799859-99--77544699999976605988975200
Q ss_pred CCCCCC--CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCC-------------HHHHHHHC
Q ss_conf 666765--574678998899999999765412667408871484207899998844998-------------65611000
Q gi|254781048|r 81 IPRKPS--MSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLP-------------SHMVVGMA 145 (320)
Q Consensus 81 ~~~~~g--~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~-------------~~rViG~G 145 (320)
...... .+....++.|..--..+.+.+.+++ ..++.+|- ..+|-......+. +.-.-|.
T Consensus 78 ~~~~~~~~~~p~~~~~~nv~~t~~ll~~~~~~~--~r~if~SS---~~VYG~~~~~~~~~~~~~~~~~p~~~p~~~Y~~- 151 (347)
T PRK11908 78 IATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST---SEVYGMCSDEEFDPEASALTYGPINKPRWIYAC- 151 (347)
T ss_pred CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC--CEEEECCC---CEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH-
T ss_conf 036488886889999999999999999999739--83896266---126547899998977787657887786547789-
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCEEE-EECCC---------C-CEEEEECCCCCCCCCHHH
Q ss_conf 52568999999999719873355056-75078---------8-524651023544770155
Q gi|254781048|r 146 GILDSARFRYFLAQEFGVSVESVTAL-VLGSH---------G-DSMVPMLRYATVSGIPVS 195 (320)
Q Consensus 146 t~LDs~R~~~~ia~~l~v~~~~V~~~-ViGeH---------G-ds~vp~~S~~~v~g~p~~ 195 (320)
+=+-.-++-..-++..+++..-+.-+ +.|-+ + +..+|.|=..-..|+|+.
T Consensus 152 sK~~~E~l~~~y~~~~~l~~~ilR~~nvyGP~~~~~~~~~~~~~~vi~~~i~~~~~g~~i~ 212 (347)
T PRK11908 152 SKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPIS 212 (347)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 9999999999999985898799976667669966556854463202799999998389840
No 134
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.67 E-value=0.041 Score=33.83 Aligned_cols=129 Identities=13% Similarity=0.156 Sum_probs=74.8
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCC
Q ss_conf 87289988981368999999957998699996578812898830762054468875685269748837897899955666
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIP 82 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~ 82 (320)
..++.|+|||.-+.++++.++..+..+|.+++++.++++..+..+.+.-. ........+.+...++|++|-+-..-
T Consensus 126 ~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~----~~~~~~~~~~~~~~~~dliINaTp~G 201 (283)
T COG0169 126 GKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGA----AVEAAALADLEGLEEADLLINATPVG 201 (283)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCC----CCCCCCCCCCCCCCCCCEEEECCCCC
T ss_conf 88899989768999999999986998799995888999999998645056----31102455412355457899788787
Q ss_pred CCCC--CCHHHHHHHHHHHHHHHHHHHHHCCCCC-CEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHH
Q ss_conf 6765--5746789988999999997654126674-08871484207899998844998656110005256899
Q gi|254781048|r 83 RKPS--MSRDDLLADNLKAIEKVGAGIRKYAPNS-FVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSAR 152 (320)
Q Consensus 83 ~~~g--~~R~dll~~N~~i~~~i~~~i~~~~p~~-i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R 152 (320)
-.+. .+-.+ ..+ ..+.. ++=++-||.++--.-..+..|.. -+=|.++.+-.+.
T Consensus 202 m~~~~~~~~~~-----~~~----------l~~~~~v~D~vY~P~~TplL~~A~~~G~~--~idGl~Mlv~Qaa 257 (283)
T COG0169 202 MAGPEGDSPVP-----AEL----------LPKGAIVYDVVYNPLETPLLREARAQGAK--TIDGLGMLVHQAA 257 (283)
T ss_pred CCCCCCCCCCC-----HHH----------CCCCCEEEEECCCCCCCHHHHHHHHCCCC--EECCHHHHHHHHH
T ss_conf 77887888886-----776----------68677899811188788899999985990--7873999999999
No 135
>PRK07454 short chain dehydrogenase; Provisional
Probab=96.65 E-value=0.064 Score=32.57 Aligned_cols=116 Identities=20% Similarity=0.181 Sum_probs=72.7
Q ss_pred CCCCEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHH----------
Q ss_conf 998728998-89-813689999999579986999965788128988307620544688756852697488----------
Q gi|254781048|r 1 MKSNKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSD---------- 68 (320)
Q Consensus 1 mk~~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~---------- 68 (320)
|++.|+++| |+ +.+|.++|..++..+. .++|.++++++++..+.++...-. .......-.+|.++
T Consensus 3 ~~~mKvalITGas~GIG~a~A~~la~~G~-~V~l~~R~~~~l~~~~~e~~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~ 79 (241)
T PRK07454 3 LNSMPTALITGASRGIGKATALAFAKAGW-DLALVARSQDALEALAEELRSTGV--KVAAYSIDLSNPEAIAPGIAELLE 79 (241)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--CEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 89998899917587899999999998799-899998999999999999996599--289999518999999999999999
Q ss_pred -HCCCCEEEEECCCCCCCCC---CH---HHHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf -3789789995566667655---74---678998899----9999997654126674088714
Q gi|254781048|r 69 -IAEADVCIVTAGIPRKPSM---SR---DDLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 69 -l~~aDivVitag~~~~~g~---~R---~dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
+-..|++|..||....... +. ...++.|.. ..+...+.+++.. .|.+++++
T Consensus 80 ~~G~iDiLVnNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~lp~M~~~~-~G~Iinis 141 (241)
T PRK07454 80 QFGCPSVLINNAGAAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARG-GGLIINVS 141 (241)
T ss_pred HCCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEE
T ss_conf 759988999889889999926699999999999986999999999999999739-98999983
No 136
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.64 E-value=0.015 Score=36.70 Aligned_cols=71 Identities=23% Similarity=0.296 Sum_probs=50.9
Q ss_pred CCEEEEECCCCHHHHHHH-HHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEEEC
Q ss_conf 872899889813689999-9995799869999657881289883076205446887568526974-8837897899955
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAH-LAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIVTA 79 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~-~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVita 79 (320)
.+.++|||+|.-....+. .....++.++.++|+++.+++..+.++.+. ...+....+. +++++||||+-+-
T Consensus 129 s~~l~iIGtG~QA~~Q~~A~~~vr~i~~V~v~~r~~~~a~~~a~~l~~~------g~~v~~~~s~~eAv~~ADIIvTaT 201 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP------GLRIVRCRSVAEAVEGADIITTVT 201 (346)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHCCCEEEEEC
T ss_conf 8769997470889999999998589868999828879999999998726------980899499999972198888711
No 137
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.63 E-value=0.0098 Score=37.84 Aligned_cols=71 Identities=24% Similarity=0.476 Sum_probs=46.7
Q ss_pred CCCC-EEEEECC-CCHHHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEE
Q ss_conf 9987-2899889-81368999999957--998699996578812898830762054468875685269748837897899
Q gi|254781048|r 1 MKSN-KIALIGS-GMIGGTLAHLAVLK--KLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCI 76 (320)
Q Consensus 1 mk~~-KV~IIGa-G~VG~~~a~~~~~~--~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivV 76 (320)
|.++ ||+|+|| |.||+.+.-+|... +..++.++.-.. -.|+.. ++......+.. -+..+++++|+++
T Consensus 1 M~~~~~VaIvGATG~VG~~li~lL~~~~~p~~~l~~laS~~--saGk~i------~~~~~~l~v~~-~~~~~~~~vDlvf 71 (336)
T PRK05671 1 MSQPLDIAVVGATGSVGEALVQVLEERDFPVGTLHLLASME--SAGHSV------PFAGKNLRVRE-VDSFDFSQVKLAF 71 (336)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCC--CCCCEE------EECCCEEEEEE-CCCCCCCCCCEEE
T ss_conf 99888799999864999999999863699802699998765--689875------46896789997-8824424598899
Q ss_pred EECC
Q ss_conf 9556
Q gi|254781048|r 77 VTAG 80 (320)
Q Consensus 77 itag 80 (320)
++++
T Consensus 72 fa~~ 75 (336)
T PRK05671 72 FAAG 75 (336)
T ss_pred ECCC
T ss_conf 8688
No 138
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.62 E-value=0.062 Score=32.66 Aligned_cols=126 Identities=19% Similarity=0.255 Sum_probs=70.4
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCC-HHHHHHHHHHHCCCCCCCCEEEECCC-HHHHCCCCEEEEE
Q ss_conf 998728998898136899999995799869999657881-28988307620544688756852697-4883789789995
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGM-PRGKALDIAESSPVEGFGAQLCGTSD-YSDIAEADVCIVT 78 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~-~~g~~~Dl~~~~~~~~~~~~v~~~~d-~~~l~~aDivVit 78 (320)
+|.+||.|+|.|.-|.+++..+..++ .++..+|..+.. ..-...+|+. ....+....+ .+.+.++|+||++
T Consensus 12 l~~kkv~i~GlG~sG~a~a~~L~~~g-~~v~~~D~~~~~~~~~~~~~l~~------~gi~~~~g~~~~~~~~~~d~vv~S 84 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLG-AKVTAFDKKSEEELGEISLELKE------KGVNLELGENYLDKLTGFDVIFKT 84 (458)
T ss_pred HCCCEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCCHHHHHHHHHHHH------CCCEEEECCCHHHHCCCCCEEEEC
T ss_conf 78996999978788999999999788-97999989884314899999985------799899578405423788889989
Q ss_pred CCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE--CCCCHH---HHHHHHHHCCCC
Q ss_conf 566667-65574678998899999999765412667408871--484207---899998844998
Q gi|254781048|r 79 AGIPRK-PSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICI--TNPLDA---MVWALQKFSGLP 137 (320)
Q Consensus 79 ag~~~~-~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~ 137 (320)
.|.|.. |- -....+.+.+++.++. ...++.+.- +|-| ||==-+ |...+.+..|++
T Consensus 85 PgI~~~~p~--~~~a~~~gi~v~~e~e-l~~~~~~~~-~IaVTGTnGKTTTtsmi~~iL~~~g~~ 145 (458)
T PRK01710 85 PSMRIDSPE--LVKAKEEGAYITSEME-EFIKYCPAK-VFGITGSDGKTTTTTLIYEMLKEEGYK 145 (458)
T ss_pred CCCCCCCHH--HHHHHHCCCCEECHHH-HHHHHCCCC-EEEEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf 987998999--9999987993740999-998637587-799936898478999999999984997
No 139
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.61 E-value=0.012 Score=37.17 Aligned_cols=97 Identities=13% Similarity=0.217 Sum_probs=56.1
Q ss_pred CEEEEECCCCHHHHHHHHHHHCC-CC--EEEEEECCCCC-HHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEEE
Q ss_conf 72899889813689999999579-98--69999657881-289883076205446887568526974-883789789995
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKK-LG--DVVLLDIVDGM-PRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIVT 78 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~-l~--ei~L~D~~~~~-~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVit 78 (320)
.||++||+|+.|++++..++..+ +. +++++++++.. .+. +.+- .+.+. ..+. +.+++||+|+++
T Consensus 2 ~kI~fIG~GnMg~Aii~Gll~~~~~~~~~i~v~~~~~~~~~~~----~~~~------~~~~~-~~~~~~~~~~~dvIila 70 (275)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVITPEEIILYSRSENEHFKQ----LYDK------YPTVA-LASNEELFTKCDHSFIC 70 (275)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHH----HHHH------CCCEE-ECCHHHHHHHCCEEEEE
T ss_conf 8899986789999999999978999963699978993899999----9987------49536-37779998549989999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEEECCCCHHHH
Q ss_conf 56666765574678998899999999765412-66740887148420789
Q gi|254781048|r 79 AGIPRKPSMSRDDLLADNLKAIEKVGAGIRKY-APNSFVICITNPLDAMV 127 (320)
Q Consensus 79 ag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~-~p~~i~ivvtNPvDv~~ 127 (320)
. ||- .+.++.+.+..+ .++.++|-+..-+.+-.
T Consensus 71 V----KP~------------~~~~vl~~i~~~~~~~~~iISi~AGi~i~~ 104 (275)
T PRK06928 71 V----PPL------------AVLPLMKDCAPVLTPDRHVVSIAAGVSLDD 104 (275)
T ss_pred E----CHH------------HHHHHHHHHHHHCCCCCEEEEECCCCCHHH
T ss_conf 7----858------------799999997653279968999569998999
No 140
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.60 E-value=0.0074 Score=38.63 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=32.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 987289988981368999999957998699996578
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
++.||.|||+|.+|+.++..++.-++..|.|+|-+.
T Consensus 137 ~~a~VlivG~GGLGs~~a~yLA~aGVG~i~lvD~D~ 172 (379)
T PRK08762 137 ARARVLLIGAGGLGSPAAFYLAAAGVGHLRIADHDV 172 (379)
T ss_pred HHCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 739789988875579999999983797589762886
No 141
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.60 E-value=0.039 Score=33.92 Aligned_cols=95 Identities=23% Similarity=0.388 Sum_probs=62.8
Q ss_pred CEEEEECCCCHHHHHHHHHHHCC-C--CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEEEC
Q ss_conf 72899889813689999999579-9--869999657881289883076205446887568526974-8837897899955
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKK-L--GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIVTA 79 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~-l--~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVita 79 (320)
.||++||+|+.|.+++..+...+ + .+|...++++++.+. +... ++.. + +.+. +....+|+|+++.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~----l~~~---~g~~--~--~~~~~~~~~~advv~Lav 70 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAA----LAAE---YGVV--T--TTDNQEAVEEADVVFLAV 70 (266)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHH----HHHH---CCCC--C--CCCHHHHHHHCCEEEEEE
T ss_conf 658998468899999999996689980238983799999999----9998---4985--5--686798874089899984
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHH
Q ss_conf 6666765574678998899999999765412667408871484207
Q gi|254781048|r 80 GIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDA 125 (320)
Q Consensus 80 g~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv 125 (320)
|| ..+.++.++++...++.++|-+.-.+.+
T Consensus 71 ----KP------------q~~~~vl~~l~~~~~~~lvISiaAGv~~ 100 (266)
T COG0345 71 ----KP------------QDLEEVLSKLKPLTKDKLVISIAAGVSI 100 (266)
T ss_pred ----CH------------HHHHHHHHHHHCCCCCCEEEEEECCCCH
T ss_conf ----82------------7689999973235688879997079979
No 142
>PRK12862 malic enzyme; Reviewed
Probab=96.59 E-value=0.0036 Score=40.70 Aligned_cols=111 Identities=16% Similarity=0.161 Sum_probs=64.5
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCC--EEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 87289988981368999999957998--6999965788128988307620544688756852697488378978999556
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLG--DVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~--ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
.-||.|.|||.-|.+++.++..-++. +++++|..--.-+|..-.++.--..+...++. .+--++++|||+++=..
T Consensus 192 ~~kiv~~GaGaa~~a~~~ll~~~G~~~~ni~~~D~~Gvi~~~r~~~~~~~k~~~a~~t~~--~~l~ea~~gADvfig~S- 268 (761)
T PRK12862 192 DVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDA--RTLAEVIEGADVFLGLS- 268 (761)
T ss_pred HEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCC--CCHHHHHCCCCEEEECC-
T ss_conf 718999788788999999999839981017999467877788774307999999650796--65999966898899806-
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCH-HHHHHHHHH
Q ss_conf 66676557467899889999999976541266740887148420-789999884
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLD-AMVWALQKF 133 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvD-v~~~~~~~~ 133 (320)
.||. +. . +.++.-+++.++.-.+||.- ++-..+.+.
T Consensus 269 ---~~~~-----~~------~---e~v~~Ma~~pivfalANP~PEI~p~~a~~~ 305 (761)
T PRK12862 269 ---AAGV-----LK------P---EMVKKMAPRPLILALANPTPEILPEEARAV 305 (761)
T ss_pred ---CCCC-----CC------H---HHHHHHCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf ---8999-----99------9---999852737778625898987599999874
No 143
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.58 E-value=0.012 Score=37.23 Aligned_cols=130 Identities=25% Similarity=0.262 Sum_probs=74.9
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 99872899889813689999999579986999965788128988307620544688756852697488378978999556
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
+++.||.|+|+|.+|..++..++..++..+.++|-+.- ++++ .+....... .|+ |
T Consensus 19 L~~s~VlvvG~GGLG~~v~~~La~aGvg~i~ivD~d~v-------~~sn------L~RQ~l~~~-------~di-----G 73 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTV-------TEED------LGAQFLIPA-------EDL-----G 73 (197)
T ss_pred HHCCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCC-------CHHH------CCCCEECCC-------CCC-----C
T ss_conf 96095999887889999999999837986999989918-------7777------397860323-------347-----8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 66676557467899889999999976541266740887148420789999884499865611000525689999999997
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQE 160 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~ 160 (320)
. +|. ....+++++.+|+.-+-..+...+-...- .+.+++ =|+-.-..+++.+.--..+.+
T Consensus 74 ~------~Ka----------~~a~~~l~~lNp~v~i~~~~~~~~~~~~~--~i~~~D--~Vvd~~dn~~~r~~iN~~c~~ 133 (197)
T cd01492 74 Q------NRA----------EASLERLRALNPRVKVSVDTDDISEKPEE--FFSQFD--VVVATELSRAELVKINELCRK 133 (197)
T ss_pred C------CHH----------HHHHHHHHHHCCCCEEEEEECCCCHHHHH--HHHCCC--EEEECCCCHHHHHHHHHHHHH
T ss_conf 8------859----------99999999738997289870458576899--982899--999999999999999999998
Q ss_pred CCCCCCCCEEEEECCCC
Q ss_conf 19873355056750788
Q gi|254781048|r 161 FGVSVESVTALVLGSHG 177 (320)
Q Consensus 161 l~v~~~~V~~~ViGeHG 177 (320)
.+++ =|++-+.|-.|
T Consensus 134 ~~ip--lI~g~~~g~~G 148 (197)
T cd01492 134 LGVK--FYATGVHGLFG 148 (197)
T ss_pred CCCC--EEEEEECCCEE
T ss_conf 1997--89998137552
No 144
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.58 E-value=0.0028 Score=41.33 Aligned_cols=166 Identities=19% Similarity=0.188 Sum_probs=85.1
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCC
Q ss_conf 98728998898136899999995799869999657881289883076205446887568526974883789789995566
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGI 81 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~ 81 (320)
+.+||.|+|+|.+|..+|..+. ++ .++.+++.++++++-.+..|.++.-..+..+....- .-+.+.+||++|-+-+.
T Consensus 231 ~~~~v~I~Ggg~ig~~la~~L~-~~-~~v~iIe~d~~~~~~la~~l~~~~Vi~GD~td~~~L-~e~gi~~aD~~ia~T~~ 307 (455)
T PRK09496 231 PVKRIMIAGGGNIGLYLAKLLE-KG-YSVKLIERDPERAEELAEELPNTLVLHGDGTDQELL-EEEGIDEADAFIALTND 307 (455)
T ss_pred CCCEEEEECCCHHHHHHHHHHH-CC-CEEEEECCCHHHHHHHHHHCCCCEEEECCCCCHHHH-HHHCCCCCCEEEEECCC
T ss_conf 6651899878699999999874-08-838997089899999997478539997887688999-76364556489990388
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 66765574678998899999999765412667408871484207899998844998656110005256899999999971
Q gi|254781048|r 82 PRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQEF 161 (320)
Q Consensus 82 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~l 161 (320)
| +.|.-. .-+++ +++..-.+..+.||--. .++.+ .|.+ .++... .+-. ..+.+.+
T Consensus 308 ---------D--e~Ni~~-~llAk---~~g~~~~ia~v~~~~y~--~l~~~-lgid--~~isp~-~~~a----~~I~~~i 362 (455)
T PRK09496 308 ---------D--EANILS-SLLAK---RLGAKKVIALINRSAYV--DLVQG-LGID--IAISPR-QATI----SAILRHV 362 (455)
T ss_pred ---------H--HHHHHH-HHHHH---HCCCCCEEEEECCHHHH--HHHHH-CCCC--EEECHH-HHHH----HHHHHHH
T ss_conf ---------1--889999-99998---73997368884466788--76532-4886--578889-9999----9999984
Q ss_pred CCCCCCCEEEEECCCCCEE---EEECCCCCCCCCHHHHH
Q ss_conf 9873355056750788524---65102354477015543
Q gi|254781048|r 162 GVSVESVTALVLGSHGDSM---VPMLRYATVSGIPVSDL 197 (320)
Q Consensus 162 ~v~~~~V~~~ViGeHGds~---vp~~S~~~v~g~p~~~~ 197 (320)
. .+.-...+.+++ |+-. +-+-+.+.+-|+++.++
T Consensus 363 ~-~~~v~~~~~l~~-~~~evie~~v~~~s~~~gk~i~el 399 (455)
T PRK09496 363 R-RGDIVAVHSLRR-GAAEAIEAVAHETSKVVGKPLKDI 399 (455)
T ss_pred C-CCCCEEEEEECC-CCEEEEEEEECCCCCCCCCCHHHC
T ss_conf 0-568448999559-956999999789993359699886
No 145
>PRK08643 acetoin reductase; Validated
Probab=96.57 E-value=0.033 Score=34.41 Aligned_cols=114 Identities=19% Similarity=0.251 Sum_probs=72.8
Q ss_pred CEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-----------HHHC
Q ss_conf 728998-89-8136899999995799869999657881289883076205446887568526974-----------8837
Q gi|254781048|r 4 NKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-----------SDIA 70 (320)
Q Consensus 4 ~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-----------~~l~ 70 (320)
+||++| |+ +.+|..++..++..+. .+++.|+++++++..+.++...-.. . .....-.+|. +.+-
T Consensus 2 nKvalVTGg~~GIG~aia~~la~~Ga-~V~i~d~~~~~~~~~~~~~~~~~~~-~-~~~~~Dvt~~~~v~~~~~~~~~~~G 78 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAKAAADKLSSDGGK-A-IAVKADVSNRDQVFDAVQQVVDTFG 78 (256)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCE-E-EEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 84999957578899999999998799-9999969889999999999853990-9-9998058999999999999999829
Q ss_pred CCCEEEEECCCCC-CCCC--C---HHHHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 8978999556666-7655--7---4678998899----9999997654126674088714
Q gi|254781048|r 71 EADVCIVTAGIPR-KPSM--S---RDDLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 71 ~aDivVitag~~~-~~g~--~---R~dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
.-|++|-.||... +|-. + =...+..|.. ..+...+.+++.+-.|.++.+|
T Consensus 79 ~iDiLVNnAG~~~~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~~~m~~~~~~G~IVnis 138 (256)
T PRK08643 79 DLNVVVNNAGLAPTTPIDTITEEQFKKVYGINVGGVIWGIQAAQEQFKKLGHGGKIINAT 138 (256)
T ss_pred CCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 987999899889998825599999999999976368999999999999828992799983
No 146
>PRK07411 hypothetical protein; Validated
Probab=96.54 E-value=0.0038 Score=40.51 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=30.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 9872899889813689999999579986999965
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDI 35 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~ 35 (320)
++.||.|||+|.+|+.++..++.-++..|.|+|-
T Consensus 37 ~~a~VlvvG~GGLG~p~~~yLaaaGvG~i~ivD~ 70 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDF 70 (390)
T ss_pred HHCCEEEECCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 7497899888723799999999838975999748
No 147
>PRK08655 prephenate dehydrogenase; Provisional
Probab=96.54 E-value=0.007 Score=38.81 Aligned_cols=65 Identities=20% Similarity=0.326 Sum_probs=45.9
Q ss_pred EEEEEC-CCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 289988-9813689999999579986999965788128988307620544688756852697488378978999556
Q gi|254781048|r 5 KIALIG-SGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 5 KV~IIG-aG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
||+||| .|..|+-++-.+...+. ++.+.+++..+++..+..|. ... ..+..+.+++||+|+++.-
T Consensus 2 kI~IIGG~G~MG~~Fa~~f~~sGy-eV~I~gRd~~k~~~va~~LG---------v~~-~~~~~e~~~~advVIvsVP 67 (441)
T PRK08655 2 KISIIGGTGGLGKWFARFLKDKGY-EVIVWGRDPKKGKEVAKELG---------VEY-ASDNIDAAKDGDIVIVSVP 67 (441)
T ss_pred EEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCCHHHHHHHHHC---------CCC-CCCHHHHHHCCCEEEEECC
T ss_conf 799994798177999999986798-89998157313567888738---------622-2447889724999999848
No 148
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.53 E-value=0.012 Score=37.32 Aligned_cols=135 Identities=21% Similarity=0.262 Sum_probs=78.1
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCCCC
Q ss_conf 28998898136899999995799869999657881289883076205446887568526974883789789995566667
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIPRK 84 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~~~ 84 (320)
||.|||+|.+|+.+|..++.-++.+|.|+|-+.- + .++.... -|.. .|+ |.|
T Consensus 1 kV~IvG~GGLG~~~a~~La~aGvg~i~lvD~D~V---------e------~SNL~RQ---~~~~---~di-----G~~-- 52 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV---------E------PSNLNRQ---QYFL---SQI-----GEP-- 52 (174)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCC---------C------CCCHHCC---HHHH---HHC-----CCH--
T ss_conf 9899876788999999999818973999989946---------6------6443013---2477---747-----974--
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHCCC-
Q ss_conf 6557467899889999999976541266740887148420789999884499865611000525689999999997198-
Q gi|254781048|r 85 PSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQEFGV- 163 (320)
Q Consensus 85 ~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~l~v- 163 (320)
. +....+++++.+|+..+-.+....|--... .-..+++ =|+ --+|+...|++|.+..-.
T Consensus 53 ----K----------a~~a~~~l~~iNp~i~i~~~~~~l~~~n~~-~l~~~~D--~Vi---D~~Dn~~tr~~l~~~~~~~ 112 (174)
T cd01487 53 ----K----------VEALKENLREINPFVKIEAINIKIDENNLE-GLFGDCD--IVV---EAFDNAETKAMLAESLLGN 112 (174)
T ss_pred ----H----------HHHHHHHHHHHCCCCEEEEEECCCCHHHHH-HHHHCCC--EEE---ECCCCHHHHHHHHHHHHHH
T ss_conf ----9----------999999999879798899991444999999-9983799--999---9999989999999999998
Q ss_pred -CCCCCEEEEECCCCCEEEEECCCC
Q ss_conf -733550567507885246510235
Q gi|254781048|r 164 -SVESVTALVLGSHGDSMVPMLRYA 187 (320)
Q Consensus 164 -~~~~V~~~ViGeHGds~vp~~S~~ 187 (320)
...-|.+-.+|.+|..+...++..
T Consensus 113 ~~~plv~as~~~~~g~~~~~~~~~~ 137 (174)
T cd01487 113 KNKPVVCASGMAGFGDSNNIKTKKI 137 (174)
T ss_pred CCCCEEEEEEECCCCCCEEEECCCC
T ss_conf 7995999974510866057736999
No 149
>TIGR02371 ala_DH_arch alanine dehydrogenase; InterPro: IPR012742 This enzyme, a homologue of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other archaea..
Probab=96.53 E-value=0.0071 Score=38.75 Aligned_cols=100 Identities=16% Similarity=0.239 Sum_probs=66.3
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCC---CEEEEEECCCCCHHHHHHHHH-HHCCCCCCCCEEEECCC-HHHHCCCCEEEE
Q ss_conf 8728998898136899999995799---869999657881289883076-20544688756852697-488378978999
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKL---GDVVLLDIVDGMPRGKALDIA-ESSPVEGFGAQLCGTSD-YSDIAEADVCIV 77 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l---~ei~L~D~~~~~~~g~~~Dl~-~~~~~~~~~~~v~~~~d-~~~l~~aDivVi 77 (320)
.+.+++|||| -++...|.+++.+ .|+-.||+.+.-++-.+...+ |. .+.+....+ .|+..+|||+|-
T Consensus 129 ssv~G~iGaG--~QA~tQL~Al~rVfd~eeV~~y~rt~~~~~kF~~~~skd~------~~~~~a~~~p~E~v~~cDilVT 200 (327)
T TIGR02371 129 SSVLGLIGAG--RQAYTQLEALSRVFDLEEVKVYSRTKEAAEKFVKRASKDY------EVPVRAATDPAEKVEDCDILVT 200 (327)
T ss_pred CCEEEEEECC--HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCC------CCCEEECCCCHHHHCCCCEEEE
T ss_conf 6335576368--5799999998762554506998617688999998752024------6512421267477707867998
Q ss_pred E--------------------C-CCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHCC
Q ss_conf 5--------------------5-666676557467-89988999999997654126
Q gi|254781048|r 78 T--------------------A-GIPRKPSMSRDD-LLADNLKAIEKVGAGIRKYA 111 (320)
Q Consensus 78 t--------------------a-g~~~~~g~~R~d-ll~~N~~i~~~i~~~i~~~~ 111 (320)
| | |+- .||..-+| ++-.|++|+.+=.++-.+.+
T Consensus 201 tTPsRkPvVkA~WV~eGTHInAiGAD-apGKqELDpeiLk~aki~vDdleQA~HsG 255 (327)
T TIGR02371 201 TTPSRKPVVKADWVEEGTHINAIGAD-APGKQELDPEILKKAKIVVDDLEQAKHSG 255 (327)
T ss_pred ECCCCCCEEEEECCCCCCCEEEECCC-CCCCCCCCHHHHHCCCEEEECHHHCCCCC
T ss_conf 56898960754225988825510578-88831003687632706885133200176
No 150
>PRK05855 short chain dehydrogenase; Validated
Probab=96.51 E-value=0.023 Score=35.42 Aligned_cols=213 Identities=22% Similarity=0.283 Sum_probs=110.9
Q ss_pred CCEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHH-----------H
Q ss_conf 8728998-89-813689999999579986999965788128988307620544688756852697488-----------3
Q gi|254781048|r 3 SNKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSD-----------I 69 (320)
Q Consensus 3 ~~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~-----------l 69 (320)
+.|+++| || ..+|.++|..++..+ ++++|.|++++.++..+.++...-... .....-.+|.++ +
T Consensus 314 sGKvAvVTGA~sGIGrA~A~~fA~~G-A~Vvl~Dr~~~~l~eta~ei~~~G~~a--~~~~~DVtd~~av~al~~~v~~~~ 390 (582)
T PRK05855 314 GGKLVVVTGAGSGIGRATALAFAREG-AEVVASDIDEAAAERTAALIRAAGAVA--HAYRVDVSDADAMEALAEWVGAEH 390 (582)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEECCCHHHHHHHHHHHHHCCCEE--EEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 99589995875789999999999779-999996079999999999999519848--999755899999999999999976
Q ss_pred CCCCEEEEECCCCCCCC---CCHH---HHHHHHHH----HHHHHHHHHHHCCCCCCEEEECC-----CCHH-HHHHHHHH
Q ss_conf 78978999556666765---5746---78998899----99999976541266740887148-----4207-89999884
Q gi|254781048|r 70 AEADVCIVTAGIPRKPS---MSRD---DLLADNLK----AIEKVGAGIRKYAPNSFVICITN-----PLDA-MVWALQKF 133 (320)
Q Consensus 70 ~~aDivVitag~~~~~g---~~R~---dll~~N~~----i~~~i~~~i~~~~p~~i~ivvtN-----PvDv-~~~~~~~~ 133 (320)
-..|++|..||+..... ++.. .++..|.. ..+...+.+.+.+..|.+++++- |.-- -+|-+.|+
T Consensus 391 G~iDILVNNAGI~~~g~~~d~s~e~w~~v~dVNl~Gv~~~~ra~lp~M~~rg~gG~IVNiSSiag~~~~p~~~aY~ASKa 470 (582)
T PRK05855 391 GVPDIVVNNAGIGMAGGFLDTSAEEWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPSRSLPAYATSKA 470 (582)
T ss_pred CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCHHHHHHHH
T ss_conf 99999998987589978032999999999988649999999999999996499808999678645778988646899999
Q ss_pred CCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 49986561100052568999999999719873355056750788524651023544770155430015878767999984
Q gi|254781048|r 134 SGLPSHMVVGMAGILDSARFRYFLAQEFGVSVESVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVK 213 (320)
Q Consensus 134 sg~~~~rViG~Gt~LDs~R~~~~ia~~l~v~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~ 213 (320)
=|+|+. ++.|. +++.+ ||....|. =|- =+| ++...+.+.|.. .++ ..
T Consensus 471 ------AV~gft---esLr~--ELa~~-GI~V~aVc---PG~-I~T--~I~~~a~~~g~~-----------~~~----~~ 517 (582)
T PRK05855 471 ------AVLMLS---ECLRA--ELAEA-GIGVTAIC---PGF-VDT--NIVATTRFAGAD-----------AED----EA 517 (582)
T ss_pred ------HHHHHH---HHHHH--HHCCC-CCEEEEEE---CCC-CCC--CCCCCCCCCCCC-----------HHH----HH
T ss_conf ------999999---99999--85302-97799993---184-646--755556647876-----------025----67
Q ss_pred HHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 55101588887515765432203232344554528897499999
Q gi|254781048|r 214 RTREGGAEIVGLLRSGSAYYAPASSAIAIAESYLKNKKNLLPCA 257 (320)
Q Consensus 214 ~v~~~g~~ii~~~~kg~t~~~~a~a~~~ii~aIl~~~~~v~~~s 257 (320)
+.+......++ ...|.+-.++-.|++++.+|+..+ +++
T Consensus 518 ~~~~~~~~~~~-----~~~~~Pe~vA~~Il~aV~rnr~~v-~Vg 555 (582)
T PRK05855 518 RRRKRADKLYA-----RRGYGPEKVAKAIVSAVKRNKAVV-PVG 555 (582)
T ss_pred HHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHCCCCEE-EEC
T ss_conf 78887766654-----059999999999999985599889-868
No 151
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.50 E-value=0.0032 Score=41.04 Aligned_cols=158 Identities=21% Similarity=0.255 Sum_probs=84.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHH-----HCCCCEEEEE
Q ss_conf 72899889813689999999579986999965788128988307620544688756852697488-----3789789995
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSD-----IAEADVCIVT 78 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~-----l~~aDivVit 78 (320)
.|+.|+|+|.+|.++|-.+...+- +++++|.++++++-...|-.++..+.+ ..+|.+. +.++|.+|.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~~~~~v~g------d~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADELDTHVVIG------DATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCCCEEEEEE------CCCCHHHHHHCCCCCCCEEEEE
T ss_conf 989998985788999999987899-089997688999986320004499992------6889899986798638999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHH--HHCCCCCCEEEECCCCHHHHHHHHHHC---CCCHHHHHHHCCCHHHHHH
Q ss_conf 56666765574678998899999999765--412667408871484207899998844---9986561100052568999
Q gi|254781048|r 79 AGIPRKPSMSRDDLLADNLKAIEKVGAGI--RKYAPNSFVICITNPLDAMVWALQKFS---GLPSHMVVGMAGILDSARF 153 (320)
Q Consensus 79 ag~~~~~g~~R~dll~~N~~i~~~i~~~i--~~~~p~~i~ivvtNPvDv~~~~~~~~s---g~~~~rViG~Gt~LDs~R~ 153 (320)
-|.- ..|. +...+ +.++..-++.-+.||... .++.+.. -..|.+..|.
T Consensus 74 t~~d-----------~~N~-----i~~~la~~~~gv~~viar~~~~~~~--~~~~~~g~~~ii~Pe~~~~~--------- 126 (225)
T COG0569 74 TGND-----------EVNS-----VLALLALKEFGVPRVIARARNPEHE--KVLEKLGADVIISPEKLAAK--------- 126 (225)
T ss_pred ECCC-----------HHHH-----HHHHHHHHHCCCCEEEEEECCCHHH--HHHHHCCCCEEECHHHHHHH---------
T ss_conf 0886-----------7999-----9999999873998499995694167--78986799489755899999---------
Q ss_pred HHHHHHHCCCCCCCCEEEEECC-CCCEE-EEECCCCCCCCCHHHHHH
Q ss_conf 9999997198733550567507-88524-651023544770155430
Q gi|254781048|r 154 RYFLAQEFGVSVESVTALVLGS-HGDSM-VPMLRYATVSGIPVSDLV 198 (320)
Q Consensus 154 ~~~ia~~l~v~~~~V~~~ViGe-HGds~-vp~~S~~~v~g~p~~~~~ 198 (320)
.+++.+ ..|.-.+.+-+++ +.+.. +.....+.+.|+++.++-
T Consensus 127 --~l~~~i-~~p~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~L~el~ 170 (225)
T COG0569 127 --RLARLI-VTPGALDVLELAGGDAEVIEEKVAEDSPLAGKTLRELD 170 (225)
T ss_pred --HHHHHH-CCCCHHEEEECCCCCCEEEEEEECCCCCCCCCCHHHHC
T ss_conf --999985-38863103442699723899993589825775989932
No 152
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.48 E-value=0.017 Score=36.21 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=51.7
Q ss_pred CCEEEEECCCCHHHHHHH-HHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHH-HHCCCCEEEEECC
Q ss_conf 872899889813689999-99957998699996578812898830762054468875685269748-8378978999556
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAH-LAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYS-DIAEADVCIVTAG 80 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~-~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~-~l~~aDivVitag 80 (320)
.+.++|||+|.-+.+... .+....+.++.+++++.++++..+..++.- +...+....+.+ .+++||||+.+..
T Consensus 118 ~~~l~iiG~G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~-----~~~~v~~~~~~e~av~~aDiI~taT~ 192 (302)
T PRK06407 118 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKE-----FGVDIRPVDNAEAALRDADTITSITN 192 (302)
T ss_pred CCEEEEEEEHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHH-----CCCCEEEECCHHHHHHHCCEEEEECC
T ss_conf 8789999665999999999997407738999808889999999998644-----09957994899999834999999418
Q ss_pred C
Q ss_conf 6
Q gi|254781048|r 81 I 81 (320)
Q Consensus 81 ~ 81 (320)
.
T Consensus 193 s 193 (302)
T PRK06407 193 S 193 (302)
T ss_pred C
T ss_conf 9
No 153
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.47 E-value=0.027 Score=34.97 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=69.9
Q ss_pred CCEEEEECCCCHHH-HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCC
Q ss_conf 87289988981368-99999995799869999657881289883076205446887568526974883789789995566
Q gi|254781048|r 3 SNKIALIGSGMIGG-TLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGI 81 (320)
Q Consensus 3 ~~KV~IIGaG~VG~-~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~ 81 (320)
-+||-+||.|..|. ++|.++...+. ++...|..+.... ..|+. ....+...-+.+.+.++|+||++.|+
T Consensus 8 ~k~ih~iGigG~GmsalA~~l~~~G~-~V~gsD~~~~~~~---~~L~~------~Gi~v~~g~~~~~l~~~d~vV~Sp~I 77 (459)
T PRK00421 8 IKRIHFVGIGGIGMSGLAEVLLNLGY-KVSGSDLKESAVT---QRLLE------LGAIIFIGHDAENIKGADVVVVSSAI 77 (459)
T ss_pred CCEEEEEEECHHHHHHHHHHHHHCCC-EEEEECCCCCHHH---HHHHH------CCCEEECCCCHHHCCCCCEEEECCCC
T ss_conf 78899998668889999999996899-3999889899789---99997------87999779897987999999989985
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE--CCCCH---HHHHHHHHHCCCCHHHHHH
Q ss_conf 66765574678998899999999765412667408871--48420---7899998844998656110
Q gi|254781048|r 82 PRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICI--TNPLD---AMVWALQKFSGLPSHMVVG 143 (320)
Q Consensus 82 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivv--tNPvD---v~~~~~~~~sg~~~~rViG 143 (320)
|...- ......+.+.+++.+. +-+.....+..+|-| ||==- .|...+.+.+|+++.-++|
T Consensus 78 ~~~~p-~~~~a~~~gi~v~~~~-e~l~~~~~~~~~IaVtGTnGKTTtT~ll~~il~~~g~~~~~~iG 142 (459)
T PRK00421 78 KPDNP-ELVAARELGIPVVRRA-EMLAELMRLRTSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFIIG 142 (459)
T ss_pred CCCCH-HHHHHHHCCCCEEEHH-HHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 99899-9999998799798899-99999982596499977888611899999999976998748857
No 154
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.47 E-value=0.015 Score=36.66 Aligned_cols=71 Identities=14% Similarity=0.124 Sum_probs=49.9
Q ss_pred CCEEEEECCCCHHH-HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEEEC
Q ss_conf 87289988981368-99999995799869999657881289883076205446887568526974-8837897899955
Q gi|254781048|r 3 SNKIALIGSGMIGG-TLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIVTA 79 (320)
Q Consensus 3 ~~KV~IIGaG~VG~-~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVita 79 (320)
.+.++|||+|.-+. ++..++...++.++.++|+++++++..+..+++. ...+....+. +++++||||+.+.
T Consensus 128 a~~l~iiGtG~QA~~~l~a~~~v~~i~~v~v~~r~~~~~~~f~~~~~~~------~~~v~~~~~~~eav~~ADIIvtaT 200 (315)
T PRK06823 128 VKAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL------GFAVNTTLDAAEVAHAANLIVTTT 200 (315)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHC------CCCEEEECCHHHHHHHCCEEEEEE
T ss_conf 8569997718999999999987187109999469979999999999861------990799489999974277479887
No 155
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.46 E-value=0.019 Score=36.04 Aligned_cols=75 Identities=23% Similarity=0.251 Sum_probs=54.3
Q ss_pred CCCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCE-EEECCC---HHHHCCCCEE
Q ss_conf 99872899889-813689999999579986999965788128988307620544688756-852697---4883789789
Q gi|254781048|r 1 MKSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQ-LCGTSD---YSDIAEADVC 75 (320)
Q Consensus 1 mk~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~-v~~~~d---~~~l~~aDiv 75 (320)
.+..|+.|+|+ |.||..+|-.++..+ +++.|..++.++++..+..+++- ++.... +..+.+ .+.++++|+|
T Consensus 26 l~g~~~~V~G~tG~vG~~~A~~lA~~G-a~v~lv~R~~ek~~~~a~~i~~r---~g~~~~~~~~~~~~~~~~~l~~adiV 101 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRDLERAQKAADSLRAR---FGEGVGAVETSDDAARAAAIKGADVV 101 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHH---CCCCCCCCCCCCHHHHHHHHCCCCEE
T ss_conf 679889998588578999999999839-97999958788899999999997---09873113578877899774669899
Q ss_pred EEEC
Q ss_conf 9955
Q gi|254781048|r 76 IVTA 79 (320)
Q Consensus 76 Vita 79 (320)
+-++
T Consensus 102 ~~a~ 105 (194)
T cd01078 102 FAAG 105 (194)
T ss_pred EECC
T ss_conf 9642
No 156
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.44 E-value=0.0043 Score=40.14 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=31.8
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 998728998898136899999995799869999657
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIV 36 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~ 36 (320)
+++.||.|||+|.+|+.++..++.-++.+|.|+|-+
T Consensus 26 L~~s~VlvvG~GGLG~~~~~yLa~aGvG~i~i~D~D 61 (355)
T PRK05597 26 LFDAKVSVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HHCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 862968998777668999999998499759997299
No 157
>pfam02826 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain. This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389.
Probab=96.44 E-value=0.034 Score=34.37 Aligned_cols=114 Identities=24% Similarity=0.242 Sum_probs=59.9
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHH-HHCCCCEEEEEC
Q ss_conf 9987289988981368999999957998699996578812898830762054468875685269748-837897899955
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYS-DIAEADVCIVTA 79 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~-~l~~aDivVita 79 (320)
++.++|+|||.|++|..+|-.+..-+ .++..+|+..... ..+ ... ...+++ -++.||+|++..
T Consensus 34 L~gk~vgIiG~G~IG~~va~~l~~fg-~~V~~~d~~~~~~------~~~------~~~---~~~~l~~ll~~sDii~~~~ 97 (176)
T pfam02826 34 LSGKTVGIIGLGRIGRAVARRLKAFG-MKVIAYDRYPKAE------AEA------LGA---RYVSLDELLAESDVVSLHL 97 (176)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHC-CCEEEECCCCCCH------HHH------CCE---EECCHHHHHHHCCEEEECC
T ss_conf 79999999896999999999999839-8125437987610------231------571---6668999986299887547
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHC
Q ss_conf 666676557467899889999999976541266740887148420789999884499865611000
Q gi|254781048|r 80 GIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMA 145 (320)
Q Consensus 80 g~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~G 145 (320)
- .++. |+ .++ |.+.+ . ...+++++++++---=+-...+.+. +..+++.|.+
T Consensus 98 p--lt~~-T~-~li--~~~~l----~---~mk~~a~lIN~sRG~ivde~aL~~a--L~~~~i~~a~ 148 (176)
T pfam02826 98 P--LTPE-TR-HLI--NAERL----A---LMKPGAILINTARGGLVDEDALIAA--LKSGRIAGAA 148 (176)
T ss_pred C--CCCC-CC-CCC--CHHHH----H---HHCCCCEEEEECCCCCCCHHHHHHH--HHHCCCEEEE
T ss_conf 6--7420-24-634--69999----8---5189988998067551289999999--9809915899
No 158
>PRK07232 malic enzyme; Reviewed
Probab=96.44 E-value=0.0067 Score=38.91 Aligned_cols=111 Identities=17% Similarity=0.236 Sum_probs=65.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCC--EEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEEE
Q ss_conf 987289988981368999999957998--69999657881289883076205446887568526974-883789789995
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLG--DVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIVT 78 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~--ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVit 78 (320)
..-||.+.|||.-|-+++.++..-++. +++++|..--.-+|..-+++.--..+...+. ..+. ++++|||+.+
T Consensus 185 ~~~kiv~~GaGaa~~a~~~ll~~~G~~~~ni~~~d~~Gvi~~~r~~~~~~~k~~~a~~t~---~~~l~ea~~gaDvfi-- 259 (753)
T PRK07232 185 EDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAQDTD---ARTLAEAIEGADVFL-- 259 (753)
T ss_pred HHEEEEEECCCHHHHHHHHHHHHCCCCHHCEEEEECCCCCCCCCCCCCHHHHHHHCCCCC---CCCHHHHHCCCCEEE--
T ss_conf 671899978868889999999984998010799957786568887762499998634689---886999957997899--
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCH-HHHHHHHHH
Q ss_conf 5666676557467899889999999976541266740887148420-789999884
Q gi|254781048|r 79 AGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLD-AMVWALQKF 133 (320)
Q Consensus 79 ag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvD-v~~~~~~~~ 133 (320)
|.. .+|. +. . +.++.-+++.++.-.+||.- ++-..+.+.
T Consensus 260 -g~S-~~~~-----~~------~---~mv~~Ma~~pivfalANP~PEI~p~~a~~~ 299 (753)
T PRK07232 260 -GLS-AAGV-----LT------P---EMVKSMADNPIIFALANPDPEITPEEAKAV 299 (753)
T ss_pred -ECC-CCCC-----CC------H---HHHHHHCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf -747-7997-----89------9---999862878779856898977699999976
No 159
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.43 E-value=0.087 Score=31.70 Aligned_cols=130 Identities=15% Similarity=0.206 Sum_probs=68.3
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEE-ECCCHHHHCCCCEEEEEC
Q ss_conf 9987289988981368999999957998699996578812898830762054468875685-269748837897899955
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLC-GTSDYSDIAEADVCIVTA 79 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~-~~~d~~~l~~aDivVita 79 (320)
.|++||.|+|.|.-|.++|.++..++ .++...|..+....-. .++- ........ +.-+.+.+.++|+||+..
T Consensus 5 ~~~k~vlV~GlG~sG~a~a~~L~~~G-~~V~~~D~~~~~~~~~--~l~~----~~~~~~~~~g~~~~~~~~~~d~vV~SP 77 (501)
T PRK02006 5 RQRPMVLVLGLGESGLAMARWCARHG-CRLRVADTREAPPNLA--ALQA----EGIDAEFVGGAFDPALLDGVELVALSP 77 (501)
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCCCCCHH--HHHH----CCCCCEEECCCCCHHHHCCCCEEEECC
T ss_conf 68983999833688999999999789-8499998999986199--9986----089818977889867846899999899
Q ss_pred CCCCC-CCCCH-HHHHH-HHHHHHHHHH------HHHH-HCCCCCCEEEE--CCCCHH---HHHHHHHHCCCC
Q ss_conf 66667-65574-67899-8899999999------7654-12667408871--484207---899998844998
Q gi|254781048|r 80 GIPRK-PSMSR-DDLLA-DNLKAIEKVG------AGIR-KYAPNSFVICI--TNPLDA---MVWALQKFSGLP 137 (320)
Q Consensus 80 g~~~~-~g~~R-~dll~-~N~~i~~~i~------~~i~-~~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~ 137 (320)
|.+.. |.... ...++ .+.+|+.++- +.+. ...+...+|-| ||==-+ |+..+.+..|++
T Consensus 78 GI~p~~p~~~~~l~~A~~~gi~i~~eiel~~~~~~~~~~~~~~~~~iIaVTGTnGKTTTt~li~~iL~~~g~~ 150 (501)
T PRK02006 78 GLSPLEPALAALLAAARERGIPVWGELELFAQALAALGASRGYAPKVLAITGTNGKTTTTSLTGLLCERAGKK 150 (501)
T ss_pred EECCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 0088885431999999987995876899999887630222356874899938996687999999999976997
No 160
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.43 E-value=0.0082 Score=38.36 Aligned_cols=70 Identities=21% Similarity=0.368 Sum_probs=46.6
Q ss_pred CCEEEEECC-CCHHHHHHHHHHHCC--CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEEC
Q ss_conf 872899889-813689999999579--98699996578812898830762054468875685269748837897899955
Q gi|254781048|r 3 SNKIALIGS-GMIGGTLAHLAVLKK--LGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTA 79 (320)
Q Consensus 3 ~~KV~IIGa-G~VG~~~a~~~~~~~--l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVita 79 (320)
..||+|+|| |.||..+.-++..+. ..++.++.-.. ..|+... |.+....+ ..-+..+++++|++++++
T Consensus 2 m~kVaIvGATG~vG~eli~lL~~~~~p~~~i~~~aS~~--s~G~~~~------~~~~~~~~-~~~~~~~~~~~Di~f~a~ 72 (348)
T PRK06598 2 MYNVGVVGATGMVGSVLLQMLEERDFPVIEPVFFASSR--SGGKAPS------FGGKTLLV-DALDIEDLKGLDIALFSA 72 (348)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCC--CCCCCCE------ECCCEEEE-EECCHHHHHCCCEEEECC
T ss_conf 84799989845999999999986799962499998756--6898750------68955478-627855760799999868
Q ss_pred CC
Q ss_conf 66
Q gi|254781048|r 80 GI 81 (320)
Q Consensus 80 g~ 81 (320)
+.
T Consensus 73 ~~ 74 (348)
T PRK06598 73 GG 74 (348)
T ss_pred CC
T ss_conf 82
No 161
>PRK07832 short chain dehydrogenase; Provisional
Probab=96.41 E-value=0.09 Score=31.61 Aligned_cols=211 Identities=17% Similarity=0.222 Sum_probs=110.1
Q ss_pred CEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHH-----------HCC
Q ss_conf 72899889-813689999999579986999965788128988307620544688756852697488-----------378
Q gi|254781048|r 4 NKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSD-----------IAE 71 (320)
Q Consensus 4 ~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~-----------l~~ 71 (320)
+++-|.|+ +.+|..+|..++.++ ++++|.|+++++++..+.++...-..... ....-..|.++ .-.
T Consensus 1 K~alITGassGIG~a~A~~la~~G-a~v~l~~r~~~~l~~~~~~l~~~g~~~~~-~~~~Dvsd~~~v~~~~~~~~~~~g~ 78 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQG-AELFLTDRDADGLAQTVADARALGGTVPE-HRALDISDYDAVAAFAADIHAAHPS 78 (272)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCCCEEE-EEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 979994720199999999999889-98999989889999999999845897147-8856689999999999999997299
Q ss_pred CCEEEEECCCCCCCC---CCH---HHHHHHHH----HHHHHHHHHHHHCCCCCCEEEECCCCHH------HHHHHHHHCC
Q ss_conf 978999556666765---574---67899889----9999999765412667408871484207------8999988449
Q gi|254781048|r 72 ADVCIVTAGIPRKPS---MSR---DDLLADNL----KAIEKVGAGIRKYAPNSFVICITNPLDA------MVWALQKFSG 135 (320)
Q Consensus 72 aDivVitag~~~~~g---~~R---~dll~~N~----~i~~~i~~~i~~~~p~~i~ivvtNPvDv------~~~~~~~~sg 135 (320)
-|++|..||...... ++- ..+++.|. ...+.+.+.+.+....|.+++++--.-. -+|-+.|+
T Consensus 79 iDiLiNNAGi~~~g~~~~~~~~~~~~~~~vN~~g~~~~~~~~lp~m~~~~~~G~IVnisS~ag~~~~p~~~~Y~ASK~-- 156 (272)
T PRK07832 79 MDVVMNIAGISAWGTVDRLTHEQWRRMVDINLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLVGLPWHAAYSASKY-- 156 (272)
T ss_pred CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCHHHHHHH--
T ss_conf 888998787688887345899999999998728999999999999998389968999757775568999802999999--
Q ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 98656110005256899999999971987335505675078852465102354477015543001587876799998455
Q gi|254781048|r 136 LPSHMVVGMAGILDSARFRYFLAQEFGVSVESVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRT 215 (320)
Q Consensus 136 ~~~~rViG~Gt~LDs~R~~~~ia~~l~v~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~l~~~v 215 (320)
=+.| .-++.| .++++ .|| +..++- .|--.-|.+.++...|..- ..........+
T Consensus 157 ----av~g---~~esL~--~El~~-~gI-----~V~~v~-PG~v~T~~~~~~~~~~~~~---------~~~~~~~~~~~- 210 (272)
T PRK07832 157 ----GLRG---LSEVLR--FDLAR-HGI-----GVSVVV-PGAVKTPLVNTVEIAGVDR---------DDPRVQKWVDR- 210 (272)
T ss_pred ----HHHH---HHHHHH--HHHCC-CCC-----EEEEEE-CCCCCCCCCCCCCCCCCCC---------CCHHHHHHHHH-
T ss_conf ----9999---999999--98521-097-----899997-4889888788856346676---------64457888764-
Q ss_pred HCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 10158888751576543220323234455452889749999
Q gi|254781048|r 216 REGGAEIVGLLRSGSAYYAPASSAIAIAESYLKNKKNLLPC 256 (320)
Q Consensus 216 ~~~g~~ii~~~~kg~t~~~~a~a~~~ii~aIl~~~~~v~~~ 256 (320)
. . ...+.+..++-.++++|-+++..+++-
T Consensus 211 ---------~--~-~~~~spe~vA~~i~~ai~~~k~~i~~~ 239 (272)
T PRK07832 211 ---------F--R-GHAVTPEKAADKILAGVERNRYLVYTS 239 (272)
T ss_pred ---------C--C-CCCCCHHHHHHHHHHHHHCCCCEEECC
T ss_conf ---------0--2-569999999999999996599799719
No 162
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=96.36 E-value=0.0041 Score=40.33 Aligned_cols=35 Identities=17% Similarity=0.385 Sum_probs=31.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 98728998898136899999995799869999657
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIV 36 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~ 36 (320)
++.||.|||+|.+|+.+++.++.-++..|.|+|-+
T Consensus 41 ~~a~VlvvG~GGLG~~~~~yLaaaGvG~i~ivD~D 75 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGVGTIGIVEFD 75 (392)
T ss_pred HHCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 71978998787578999999998289759998789
No 163
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.35 E-value=0.043 Score=33.68 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=69.1
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCC--EEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHH-H-CCCCEEEEE
Q ss_conf 87289988981368999999957998--6999965788128988307620544688756852697488-3-789789995
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLG--DVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSD-I-AEADVCIVT 78 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~--ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~-l-~~aDivVit 78 (320)
+.||+|||.|.+|+.++-.+..+... ++.-+... ..|+.... .+ ... ..++.++ + ..+|+||-+
T Consensus 2 ~~rVgiiG~GAIG~~Va~~l~~~~~~~~~l~~~~~~-------~~~~~~~~--~~-~~~--~~~~~~~lla~~pDlVvE~ 69 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRN-------AADLPPAL--AG-RVA--LLDGLPGLLAWRPDLVVEA 69 (267)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECC-------HHHHHHHH--CC-CCC--CCCCHHHHHCCCCCEEEEC
T ss_conf 517999851699999999986177765289998153-------35555553--25-665--4577577741289999989
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHH-HH---HHHHCCCCHHHHH-HHC--CCHHHH
Q ss_conf 5666676557467899889999999976541266740887148420789-99---9884499865611-000--525689
Q gi|254781048|r 79 AGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMV-WA---LQKFSGLPSHMVV-GMA--GILDSA 151 (320)
Q Consensus 79 ag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~-~~---~~~~sg~~~~rVi-G~G--t~LDs~ 151 (320)
||.. .++++++.+-+.+-+-+++-+.-=.|--- .. +.+..| .|++ -+| .-||-.
T Consensus 70 As~~----------------Av~~~a~~vL~~G~dlvv~SvGALaD~~l~~~l~~~A~~~g---~~i~ipsGAIgGlD~l 130 (267)
T PRK13301 70 AGQQ----------------AIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGG---ARIRVPAGAIAGLDYL 130 (267)
T ss_pred CCHH----------------HHHHHHHHHHHCCCCEEEECHHHHCCHHHHHHHHHHHHHCC---CEEEECCCHHHCHHHH
T ss_conf 7989----------------99999999997599699982378479889999999999779---8699747301046899
Q ss_pred HH
Q ss_conf 99
Q gi|254781048|r 152 RF 153 (320)
Q Consensus 152 R~ 153 (320)
|.
T Consensus 131 ~a 132 (267)
T PRK13301 131 QA 132 (267)
T ss_pred HH
T ss_conf 98
No 164
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.34 E-value=0.097 Score=31.38 Aligned_cols=118 Identities=19% Similarity=0.249 Sum_probs=71.1
Q ss_pred CCCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-----------HH
Q ss_conf 99872899889-8136899999995799869999657881289883076205446887568526974-----------88
Q gi|254781048|r 1 MKSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-----------SD 68 (320)
Q Consensus 1 mk~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-----------~~ 68 (320)
++.+.+-|.|+ +.+|.++|..++..+ +.+++.|+++++++..+.+++..-... .....-..++ +.
T Consensus 3 L~gK~~lITGas~GIG~aiA~~la~~G-a~V~i~~r~~~~l~~~~~~l~~~g~~~--~~~~~Dv~~~~~v~~~~~~~~~~ 79 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKG-AKLALIDLNQEKLEEAVAQCAALGGEA--EVYAANVTDEEDVEATFAQIAED 79 (253)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCCCE--EEEECCCCCHHHHHHHHHHHHHH
T ss_conf 899889994887789999999999879-989999799999999999999659948--99982479999999999999998
Q ss_pred HCCCCEEEEECCCCCC-------CC-----CCHH---HHHHHHHH----HHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 3789789995566667-------65-----5746---78998899----99999976541266740887148
Q gi|254781048|r 69 IAEADVCIVTAGIPRK-------PS-----MSRD---DLLADNLK----AIEKVGAGIRKYAPNSFVICITN 121 (320)
Q Consensus 69 l~~aDivVitag~~~~-------~g-----~~R~---dll~~N~~----i~~~i~~~i~~~~p~~i~ivvtN 121 (320)
+..-|++|..||..+. ++ ++.. ..+..|.. ..+...+.+.+....+.++++|.
T Consensus 80 ~g~iD~lVnNAGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~g~Ii~isS 151 (253)
T PRK08217 80 FGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISS 151 (253)
T ss_pred HCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 399859998574367766444666652011999999999999817899999999999998489727999633
No 165
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.32 E-value=0.01 Score=37.69 Aligned_cols=134 Identities=19% Similarity=0.124 Sum_probs=74.0
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCHHH------HHHH-H----HH-----------HCCCCCCCCEEEECCCHHHHCCC
Q ss_conf 6899999995799869999657881289------8830-7----62-----------05446887568526974883789
Q gi|254781048|r 15 GGTLAHLAVLKKLGDVVLLDIVDGMPRG------KALD-I----AE-----------SSPVEGFGAQLCGTSDYSDIAEA 72 (320)
Q Consensus 15 G~~~a~~~~~~~l~ei~L~D~~~~~~~g------~~~D-l----~~-----------~~~~~~~~~~v~~~~d~~~l~~a 72 (320)
|+-+|..+++.++ ++.|+|++++.+++ .+++ + .. .......-.....++++++++||
T Consensus 2 G~gIA~~~A~~G~-~V~l~Di~~~~~e~~~~~~~~~~~~i~~~l~~~~~~g~l~~~~~~~~l~ri~~~~~~~~~~al~da 80 (311)
T PRK08269 2 GQGIALAFAFAGL-DVTLIDFKPRDAAGFEAFDARARAEIGRPLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (311)
T ss_pred HHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHCCC
T ss_conf 3799999981798-089997980355668999999999999999999975999989999999613346876508784789
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHH---------
Q ss_conf 78999556666765574678998899999999765412667408871484207899998844998656110---------
Q gi|254781048|r 73 DVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVG--------- 143 (320)
Q Consensus 73 DivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG--------- 143 (320)
|+||-+.- ++..+-+++-.++.+.+|.. .|++||-.-+....+++.++.| .|++|
T Consensus 81 DlVIEAV~--------------E~l~iK~~vf~~l~~~~~~~-~IlaSNTSsl~is~la~~~~~p-~R~ig~HFfnP~~~ 144 (311)
T PRK08269 81 DLVFEAVP--------------EVLDAKRDALRWLGRHVDAD-ATIASTTSTFLVTDLQRHVAHP-ARFLNAHWLNPAYL 144 (311)
T ss_pred CEEEECCC--------------CCHHHHHHHHHHHHHHCCCC-CEEEEECCCCCHHHHHHHCCCC-CEEEEECCCCCCCC
T ss_conf 99998870--------------58899999999999767987-4798306627899999746981-30899624776466
Q ss_pred ---------HCCCHHHHHHHHHHHHHCCCCC
Q ss_conf ---------0052568999999999719873
Q gi|254781048|r 144 ---------MAGILDSARFRYFLAQEFGVSV 165 (320)
Q Consensus 144 ---------~Gt~LDs~R~~~~ia~~l~v~~ 165 (320)
..|.-++.-.-..+++.+|-.|
T Consensus 145 m~lVEVv~g~~Ts~e~~~~~~~~~~~~GK~p 175 (311)
T PRK08269 145 MPLVEVSPSDATDPAVVDRLAALLERIGKVP 175 (311)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 8501107899999999999999999739806
No 166
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.30 E-value=0.077 Score=32.02 Aligned_cols=124 Identities=16% Similarity=0.217 Sum_probs=67.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCC
Q ss_conf 98728998898136899999995799869999657881289883076205446887568526974883789789995566
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGI 81 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~ 81 (320)
|.+||.|+|.|.-|.+++.++..++ .++..+|..+.....+. +... .....+..+.+.+.++|+||.+.|.
T Consensus 5 ~~k~v~V~GlG~sG~s~~~~L~~~G-~~v~~~D~~~~~~~~~~--l~~~------~~~~~g~~~~~~~~~~d~vV~SPGI 75 (438)
T PRK03806 5 QGKNVVIIGLGLTGLSCVDFFLARG-VTPRVMDTRMTPPGLDK--LPEN------VERHTGSLNDEWLLAADLIVASPGI 75 (438)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCCCHHHHH--HHCC------CCEEECCCCHHHHCCCCEEEECCCC
T ss_conf 8998999945788899999999789-96999989999005788--6458------8466577796680679999989978
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE--CCCCHH---HHHHHHHHCCCC
Q ss_conf 66765574678998899999999765412667408871--484207---899998844998
Q gi|254781048|r 82 PRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICI--TNPLDA---MVWALQKFSGLP 137 (320)
Q Consensus 82 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~ 137 (320)
|...- .-......+.+|+.++--..+ .+ ++.+|-| ||==-+ |...+.+..|++
T Consensus 76 ~~~~p-~~~~a~~~~i~i~seiel~~~-~~-~~~iIaVTGTnGKTTTt~li~~iL~~~g~~ 133 (438)
T PRK03806 76 ALAHP-SLSAAADAGVEIVGDIELFCR-EA-QAPIVAITGSNGKSTVTTLVGEMAKAAGVN 133 (438)
T ss_pred CCCCH-HHHHHHHCCCCEEEHHHHHHC-CC-CCCEEEEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99898-999999879947769999722-27-998899948998489999999999865997
No 167
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.29 E-value=0.045 Score=33.55 Aligned_cols=128 Identities=14% Similarity=0.104 Sum_probs=69.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCH-HHHHHHHHHHCCCCCCCCEEEECCCHHH-HCCCCEEEEEC
Q ss_conf 987289988981368999999957998699996578812-8988307620544688756852697488-37897899955
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMP-RGKALDIAESSPVEGFGAQLCGTSDYSD-IAEADVCIVTA 79 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~-~g~~~Dl~~~~~~~~~~~~v~~~~d~~~-l~~aDivVita 79 (320)
+.+||.|+|.|.-|.++|.++...+ .++.++|..++.. ......|+.. ...+....+.+. ..++|+||++.
T Consensus 13 ~gk~v~V~GlG~sG~s~a~~L~~~G-~~v~~~D~~~~~~~~~~~~~l~~~------g~~~~~g~~~~~~~~~~d~vV~SP 85 (481)
T PRK01438 13 SGLRVVVAGLGVSGFPAADALHELG-ASVTVVADGDDDRSRERAALLEVL------GATVRLGDGETTLPEGTELVVTSP 85 (481)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCCCCCHHHHHHHHHC------CCEEEECCCHHHHHCCCCEEEECC
T ss_conf 8998999957588999999999679-989999799874486899988854------988996887566624899999899
Q ss_pred CCCCCCCCCHHH-HHHHHHHHHHHHH--HHHHHC-CCCCCEEEE--CCCCHH---HHHHHHHHCCCCH
Q ss_conf 666676557467-8998899999999--765412-667408871--484207---8999988449986
Q gi|254781048|r 80 GIPRKPSMSRDD-LLADNLKAIEKVG--AGIRKY-APNSFVICI--TNPLDA---MVWALQKFSGLPS 138 (320)
Q Consensus 80 g~~~~~g~~R~d-ll~~N~~i~~~i~--~~i~~~-~p~~i~ivv--tNPvDv---~~~~~~~~sg~~~ 138 (320)
|+|... .-.. ..+.+.+|+.++- .++... ...+.+|-| ||==-+ |...+.+..|++.
T Consensus 86 GI~~~~--p~~~~a~~~gi~i~~eiel~~~~~~~~~~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~ 151 (481)
T PRK01438 86 GWRPTH--PLLAAAAEAGIPVWGDVELAWRLRDPDGTPAPWLAVTGTNGKTTTVQMLASILRAAGLRA 151 (481)
T ss_pred CCCCCC--HHHHHHHHCCCCEECHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 789989--999999986993861899999875213688878999389974609999999999669970
No 168
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.29 E-value=0.028 Score=34.90 Aligned_cols=97 Identities=13% Similarity=0.065 Sum_probs=56.1
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 99872899889813689999999579986999965788128988307620544688756852697488378978999556
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
++.+||.|+|.|.-|.+++..+...+...++..|.+.+..+. ...+.+ ....+......+.+.++|+||..-|
T Consensus 6 ~~gkkv~V~GlG~sG~aaa~~L~~~g~~~~v~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~l~~~d~vv~SPG 78 (468)
T PRK04690 6 LEGKRVALWGWGREGRAAYRALRAQLPAQPLTVFCNAEEVRE-VGALAD------AALLVETEASAQRLAAFEVVVKSPG 78 (468)
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCCHH-HHHHCC------CCCEEECCCCHHHHHCCCEEEECCC
T ss_conf 397979998347879999999996699049997288324646-676204------5756746778557614889998995
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 6667655746789988999999997
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGA 105 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~ 105 (320)
+|..-- --......+.+|+.++.-
T Consensus 79 i~~~~p-~~~~a~~~~i~i~~eiel 102 (468)
T PRK04690 79 ISPYRP-EALAAAAQGTPFIGGTAL 102 (468)
T ss_pred CCCCCH-HHHHHHHCCCCEEEHHHH
T ss_conf 798689-999999879948868999
No 169
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.27 E-value=0.024 Score=35.32 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=30.1
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 289988981368999999957998699996578
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
||.|+|+|.+|+.++..++..++.++.++|-+.
T Consensus 1 kVlivG~GglG~~va~~L~~~Gv~~i~ivD~D~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 999999798999999999993797199997898
No 170
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.24 E-value=0.0048 Score=39.88 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=31.9
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 998728998898136899999995799869999657
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIV 36 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~ 36 (320)
+++.||.|||+|.+|+.++..++.-++..|.|+|-+
T Consensus 39 L~~a~VlvvG~GGLG~p~~~yLaaaGvG~i~ivD~D 74 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred HHCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 861978998887578999999998289748987389
No 171
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.23 E-value=0.037 Score=34.11 Aligned_cols=93 Identities=22% Similarity=0.251 Sum_probs=51.1
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECC-C-----HHHH--CCCCEEE
Q ss_conf 289988981368999999957998699996578812898830762054468875685269-7-----4883--7897899
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTS-D-----YSDI--AEADVCI 76 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~-d-----~~~l--~~aDivV 76 (320)
+|.|+|+|-+|-..+.++...+.++++..|+++++++--.. +.+....+.... + .+.. .++|+++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~-------~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE-------AGGADVVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH-------HCCCCEEECCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 89998888999999999987698279997999899999998-------77971872463014788999860898799999
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf 9556666765574678998899999999765412667408871484
Q gi|254781048|r 77 VTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNP 122 (320)
Q Consensus 77 itag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNP 122 (320)
.++|.+. .+... +.-..|.|.+.+++-|
T Consensus 244 e~~G~~~---------------~~~~a---i~~~r~gG~v~~vGv~ 271 (350)
T COG1063 244 EAVGSPP---------------ALDQA---LEALRPGGTVVVVGVY 271 (350)
T ss_pred ECCCCHH---------------HHHHH---HHHCCCCCEEEEEECC
T ss_conf 9989979---------------99999---9960259899999515
No 172
>PRK07102 short chain dehydrogenase; Provisional
Probab=96.21 E-value=0.099 Score=31.33 Aligned_cols=114 Identities=14% Similarity=0.121 Sum_probs=69.2
Q ss_pred CEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHH--------CCCCE
Q ss_conf 72899889-8136899999995799869999657881289883076205446887568526974883--------78978
Q gi|254781048|r 4 NKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDI--------AEADV 74 (320)
Q Consensus 4 ~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l--------~~aDi 74 (320)
++|-|.|+ +.+|.++|..++.++ .+++|.++++++++..+.|+...... .......-..|.+++ ..-|+
T Consensus 2 K~vlITGassGIG~a~A~~la~~G-~~v~l~~R~~~~l~~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~d~ 79 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAG-ARLYLAARDTERLERIAADLEARGAV-AVATHELDILDTARHAAFLDNLPALPDT 79 (243)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCCC-EEEEEECCCCCHHHHHHHHHHHHHHCCE
T ss_conf 979991574599999999999879-98999989889999999999853586-2899843403699999999998753797
Q ss_pred EEEECCCCCCCC---CCH---HHHHHHHH----HHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 999556666765---574---67899889----99999997654126674088714
Q gi|254781048|r 75 CIVTAGIPRKPS---MSR---DDLLADNL----KAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 75 vVitag~~~~~g---~~R---~dll~~N~----~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
++..+|...... .+- ...++.|. .+.+.+.+.+.+.+ .|.+++++
T Consensus 80 ~v~~aG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~G~Iv~is 134 (243)
T PRK07102 80 VLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARG-SGTIVGIS 134 (243)
T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEEE
T ss_conf 99973036787302399999999999998999999999999988723-97499982
No 173
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.21 E-value=0.076 Score=32.06 Aligned_cols=108 Identities=17% Similarity=0.142 Sum_probs=61.7
Q ss_pred CCCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH--------HHHCC
Q ss_conf 99872899889-8136899999995799869999657881289883076205446887568526974--------88378
Q gi|254781048|r 1 MKSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY--------SDIAE 71 (320)
Q Consensus 1 mk~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~--------~~l~~ 71 (320)
++.+++-|.|+ +.+|..+|..++..+. ++++.|+++++++.....+...-........+....+. +....
T Consensus 3 l~gK~~lVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 81 (238)
T PRK05786 3 LKGKNVLIVGVSPGLGYAVAYFALREGA-SVYAFARSEEKLKEIKKTLAKYGNVIYVVGDVSKLEGAREAAEKAAKVFGA 81 (238)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 7998899928987899999999998799-999996988999999998743597799975789999999999999998399
Q ss_pred CCEEEEECCCCC-CCCCC---HHHHHHHHHH----HHHHHHHHHHH
Q ss_conf 978999556666-76557---4678998899----99999976541
Q gi|254781048|r 72 ADVCIVTAGIPR-KPSMS---RDDLLADNLK----AIEKVGAGIRK 109 (320)
Q Consensus 72 aDivVitag~~~-~~g~~---R~dll~~N~~----i~~~i~~~i~~ 109 (320)
-|++|..||... .+-.+ -.+.+..|.. ..+...+.+++
T Consensus 82 iD~lv~naG~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~ 127 (238)
T PRK05786 82 LHGLVVTAGGYIEDTVEELAGLEDMLNNHLKAPLYAVNASLPLLRE 127 (238)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8879980575678852318999999999858999999999997421
No 174
>PRK08328 hypothetical protein; Provisional
Probab=96.21 E-value=0.0071 Score=38.77 Aligned_cols=37 Identities=30% Similarity=0.515 Sum_probs=33.2
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 9987289988981368999999957998699996578
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
+++.||.|||+|.+|++++..++.-++.+|.|+|-+.
T Consensus 25 L~~s~VlvvG~GGlGs~~~~~La~~GvG~i~lvD~D~ 61 (230)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGTVLLIDEQT 61 (230)
T ss_pred HHCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCE
T ss_conf 8559789988787899999999984898689874878
No 175
>PRK09330 cell division protein FtsZ; Validated
Probab=96.20 E-value=0.026 Score=35.07 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=59.5
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEE----C--------------C
Q ss_conf 872899889813689999999579986999965788128988307620544688756852----6--------------9
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCG----T--------------S 64 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~----~--------------~ 64 (320)
+.||-|||.|.-|......+...++..+-++-.|.+ .++++-..+....-...+++. . .
T Consensus 12 ~a~IkViGvGG~G~Navn~m~~~~i~gv~fia~NTD---~q~L~~s~a~~ki~lG~~~T~GlGAG~~Pe~G~~AA~es~~ 88 (387)
T PRK09330 12 GAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTD---AQALLKSKAPVKIQLGEKLTRGLGAGANPEVGRKAAEESRE 88 (387)
T ss_pred CCEEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCH---HHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 972899966886389999999859987079998260---99984599982597077756888888781788999999999
Q ss_pred C-HHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHH
Q ss_conf 7-488378978999556666765574678998899999999765412667408871484207
Q gi|254781048|r 65 D-YSDIAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDA 125 (320)
Q Consensus 65 d-~~~l~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv 125 (320)
+ .+.++|+|+|+||||.--..|. .-++++.++++.+... .+-+||-|-..
T Consensus 89 ~I~~~l~g~dmvFItAGmGGGTGT-------GAaPviA~iAke~g~L----tV~vVT~PF~f 139 (387)
T PRK09330 89 EIREALEGADMVFITAGMGGGTGT-------GAAPVVAEIAKEMGIL----TVGVVTKPFSF 139 (387)
T ss_pred HHHHHHCCCCEEEEECCCCCCCCC-------CHHHHHHHHHHHCCCE----EEEEEECCEEE
T ss_conf 999997789879996266788777-------6048999988557984----99999589510
No 176
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.20 E-value=0.036 Score=34.20 Aligned_cols=125 Identities=15% Similarity=0.184 Sum_probs=67.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCCC
Q ss_conf 72899889813689999999579986999965788128988307620544688756852697488378978999556666
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIPR 83 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~~ 83 (320)
.||.|+|.|.-|.++|..+...+. ++...|.++.........+ + ...+......+.+.++|+||.+.|.|.
T Consensus 18 ~kvlV~GlG~SG~s~a~~L~~~G~-~v~~~D~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~d~vV~SPGI~~ 88 (476)
T PRK00141 18 GRVLVAGAGVSGLGIAKMLSELGC-DVVVADDNETQRHMLIEVV-------D-VADISTAQASDALDSYSIVVTSPGWRP 88 (476)
T ss_pred CCEEEEEECHHHHHHHHHHHHCCC-EEEEEECCCCHHHHHHHHC-------C-CCEECCCCHHHHHCCCCEEEECCCCCC
T ss_conf 988999227889999999997899-7999989987035788747-------9-856515530656468999998997899
Q ss_pred CCCCCHHHHHHHHHHHHHHHH--HHHHH---CCCCCCEEEE--CCCCHH---HHHHHHHHCCCCH
Q ss_conf 765574678998899999999--76541---2667408871--484207---8999988449986
Q gi|254781048|r 84 KPSMSRDDLLADNLKAIEKVG--AGIRK---YAPNSFVICI--TNPLDA---MVWALQKFSGLPS 138 (320)
Q Consensus 84 ~~g~~R~dll~~N~~i~~~i~--~~i~~---~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~~ 138 (320)
..- --......+.+|+.++- .++.+ +++...+|-| ||==-+ |...+.+..|++.
T Consensus 89 ~~p-~l~~a~~~gi~viseiel~~~~~~~~~~~~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~ 152 (476)
T PRK00141 89 DSP-LLVDAQSAGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQAGGFAA 152 (476)
T ss_pred CCH-HHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 799-9999998799577199999986116433677763889689967989999999998379972
No 177
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.19 E-value=0.032 Score=34.52 Aligned_cols=79 Identities=19% Similarity=0.357 Sum_probs=44.9
Q ss_pred CCCCEEEEECC-CCHHHHHHHHHHHCCCCEEE-EE--ECCCCCHHHHHHHHHHHCCCCC--CCCEEEECCCHHHHCCCCE
Q ss_conf 99872899889-81368999999957998699-99--6578812898830762054468--8756852697488378978
Q gi|254781048|r 1 MKSNKIALIGS-GMIGGTLAHLAVLKKLGDVV-LL--DIVDGMPRGKALDIAESSPVEG--FGAQLCGTSDYSDIAEADV 74 (320)
Q Consensus 1 mk~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~-L~--D~~~~~~~g~~~Dl~~~~~~~~--~~~~v~~~~d~~~l~~aDi 74 (320)
|++-||+|+|| |.+|..+.-++...+-.||. |. +....+.-+++....-...+.. ....+. .-|..+++++|+
T Consensus 1 M~kikvaIvGatGy~G~ELirlL~~HP~~ei~~l~aS~~~aGk~~~~~~~~~~~~~~p~~~~~l~~~-~~~~~~~~~~Dv 79 (350)
T PRK08664 1 MDKLKVGVLGATGLVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADLEVV-STDPVDVDDVDI 79 (350)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCEEEE-ECCHHHHCCCCE
T ss_conf 9977799989842999999999970999668999965533788415520322346676444650798-688457438999
Q ss_pred EEEECC
Q ss_conf 999556
Q gi|254781048|r 75 CIVTAG 80 (320)
Q Consensus 75 vVitag 80 (320)
++.+..
T Consensus 80 vF~AlP 85 (350)
T PRK08664 80 VFSALP 85 (350)
T ss_pred EEECCC
T ss_conf 999898
No 178
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.18 E-value=0.054 Score=33.05 Aligned_cols=95 Identities=20% Similarity=0.259 Sum_probs=54.6
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCC-EEEEEECCCCC-HHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEEC
Q ss_conf 987289988981368999999957998-69999657881-2898830762054468875685269748837897899955
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLG-DVVLLDIVDGM-PRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTA 79 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~-ei~L~D~~~~~-~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVita 79 (320)
...||.|+|.|.+|+.++..+...+.. .++=+|..... ..+..+++.|.. ......+..++||+||++.
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~---------~~~~~~~~~~~aDlVivav 72 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDEL---------TVAGLAEAAAEADLVIVAV 72 (279)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCHHH---------CCCHHHHHCCCCCEEEEEC
T ss_conf 8648999877467799999999769847997247746778776635853010---------0115554135699899957
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 66667655746789988999999997654126674088714
Q gi|254781048|r 80 GIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 80 g~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
=.. ...++++++++.+ .+++++.=++
T Consensus 73 Pi~------------~~~~~l~~l~~~l---~~g~iv~Dv~ 98 (279)
T COG0287 73 PIE------------ATEEVLKELAPHL---KKGAIVTDVG 98 (279)
T ss_pred CHH------------HHHHHHHHHCCCC---CCCCEEECCC
T ss_conf 788------------9999999863037---9998897364
No 179
>PRK07024 short chain dehydrogenase; Provisional
Probab=96.17 E-value=0.1 Score=31.22 Aligned_cols=112 Identities=18% Similarity=0.157 Sum_probs=67.4
Q ss_pred CCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHH-----------HC
Q ss_conf 872899889-813689999999579986999965788128988307620544688756852697488-----------37
Q gi|254781048|r 3 SNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSD-----------IA 70 (320)
Q Consensus 3 ~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~-----------l~ 70 (320)
++||-|.|+ ..+|..+|..++.++ .+++|.++++++++..+.++..... .....-..|.++ ..
T Consensus 2 ~~~VlITGassGIG~a~A~~la~~G-~~v~l~~R~~~~L~~~~~~~~~~~~----~~~~~Dv~d~~~~~~~~~~~~~~~g 76 (256)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQG-ATLGLVARRTDALQAFAARLPKARV----SVYAADVRDADALAAAAADFIAAHG 76 (256)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCCCE----EEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 9989998460299999999999889-9899998988999999997679976----9998117999999999999999839
Q ss_pred CCCEEEEECCCCCC--CCCC-HH----HHHHHHHHH----HHHHHHHHHHCCCCCCEEEEC
Q ss_conf 89789995566667--6557-46----789988999----999997654126674088714
Q gi|254781048|r 71 EADVCIVTAGIPRK--PSMS-RD----DLLADNLKA----IEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 71 ~aDivVitag~~~~--~g~~-R~----dll~~N~~i----~~~i~~~i~~~~p~~i~ivvt 120 (320)
.-|++|..||.... ..+. -. +.++.|..= .+.+.+.+.+. ..|.+++++
T Consensus 77 ~iDilinNAGi~~~~~~~~~~d~~~~~~~~~vN~~g~~~~~~~~lp~m~~~-~~G~Iv~is 136 (256)
T PRK07024 77 CPDVVIANAGISVGTLTGEGEDLAVFREVMDTNYYGMVATFEPFIAPMRAA-RRGTLVGIA 136 (256)
T ss_pred CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCEEEEEC
T ss_conf 987999888556788644537899999999999999999999876875026-893499843
No 180
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.16 E-value=0.031 Score=34.56 Aligned_cols=72 Identities=17% Similarity=0.138 Sum_probs=50.4
Q ss_pred CCEEEEECCCCHHHHHHH-HHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 872899889813689999-999579986999965788128988307620544688756852697488378978999556
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAH-LAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~-~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
..+++|||+|.-+.+-+. ++...++.++.+++++.++++..+..++.. .........-+.+++||||+.+-.
T Consensus 125 ~~~l~iiGaG~QA~~~~~a~~~v~~~~~V~v~~r~~~~a~~~~~~~~~~------~~~~~~~~~e~av~~aDiI~taT~ 197 (304)
T PRK07340 125 PRDLLLIGTGVQAAHHLEALAALLPVRRVWVRGRTAASAAAFCAAARAL------GPTLEPLDGDAIPPAVDVVVTVTT 197 (304)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCC------CCCEEECCHHHHHHHCCEEEEECC
T ss_conf 7517997347999999999998599748999879989999999998600------991797689999842898999418
No 181
>PRK07074 short chain dehydrogenase; Provisional
Probab=96.15 E-value=0.11 Score=31.01 Aligned_cols=113 Identities=25% Similarity=0.362 Sum_probs=68.9
Q ss_pred CCEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH----------HHHC
Q ss_conf 8728998-89-8136899999995799869999657881289883076205446887568526974----------8837
Q gi|254781048|r 3 SNKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY----------SDIA 70 (320)
Q Consensus 3 ~~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~----------~~l~ 70 (320)
++|+++| |+ +.+|..++..++..+ +.++++|+++++++..+.++.... .... ..-..|. ++..
T Consensus 1 TnKvalITGgs~GIG~aia~~la~~G-a~V~~~~r~~~~~~~~~~~l~~~~-~~~~---~~Dv~~~~~~~~~~~~i~~~g 75 (256)
T PRK07074 1 TSRTALVTGAAGGIGQALARRFLAAG-DRVLALDIDRAALAAFVDALGDAA-VAPV---ICDLTDAASVERLAAALANEG 75 (256)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHCCCC-EEEE---EEECCCHHHHHHHHHHHHHHC
T ss_conf 99889998846899999999999869-999999798899999999826997-7999---972799999999999999859
Q ss_pred CCCEEEEECCCCCCCCC---CHH---HHHHHHH----HHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 89789995566667655---746---7899889----999999976541266740887148
Q gi|254781048|r 71 EADVCIVTAGIPRKPSM---SRD---DLLADNL----KAIEKVGAGIRKYAPNSFVICITN 121 (320)
Q Consensus 71 ~aDivVitag~~~~~g~---~R~---dll~~N~----~i~~~i~~~i~~~~p~~i~ivvtN 121 (320)
.-|++|..||....... +.. ..+..|. ...+...+.+++.. .|-+|.++-
T Consensus 76 ~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~f~~~~~~~p~m~~~~-~G~IInisS 135 (256)
T PRK07074 76 PVDVLVANAGAARAATLHDTTSASWRADNALNLEATYLCVEAVEAGMKARS-RGAIVNIGS 135 (256)
T ss_pred CCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEC
T ss_conf 987999888778998915599999999999985999999999999998759-976999966
No 182
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=96.14 E-value=0.058 Score=32.82 Aligned_cols=67 Identities=28% Similarity=0.308 Sum_probs=45.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCC
Q ss_conf 728998898136899999995799869999657881289883076205446887568526974883789789995566
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGI 81 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~ 81 (320)
.||++||.|..|+..|-.++..+ -++..+|++++++... +.. ...... .+..+..++||+|+.....
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG-~~v~v~~r~~~ka~~~---~~~------~Ga~~a-~s~~eaa~~aDvVitmv~~ 67 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAG-HEVTVYNRTPEKAAEL---LAA------AGATVA-ASPAEAAAEADVVITMLPD 67 (286)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHH---HHH------CCCEEC-CCHHHHHHHCCEEEEECCC
T ss_conf 90799857352599999999779-8789980885665689---997------298003-8899999619989996179
No 183
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=96.13 E-value=0.021 Score=35.74 Aligned_cols=44 Identities=25% Similarity=0.192 Sum_probs=24.9
Q ss_pred CCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 40887148420789999884499865611000525689999999997198
Q gi|254781048|r 114 SFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQEFGV 163 (320)
Q Consensus 114 ~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~l~v 163 (320)
-++++=.-|+-.++..+.+..|. .+|+.+ |....|..+|++++.
T Consensus 123 ~V~V~G~G~iGl~~~~~a~~~Ga--~~Vi~~----d~~~~rl~~a~~~Ga 166 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAAGA--ARVVAA----DPSPDRRELALSFGA 166 (280)
T ss_pred EEEEEECCHHHHHHHHHHHHCCC--CEEEEE----ECCHHHHHHHHHCCC
T ss_conf 89999078689999999998499--879999----199899999997399
No 184
>pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Probab=96.11 E-value=0.021 Score=35.64 Aligned_cols=64 Identities=23% Similarity=0.285 Sum_probs=45.1
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHH-HHCCCCEEEEECC
Q ss_conf 7289988981368999999957998699996578812898830762054468875685269748-8378978999556
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYS-DIAEADVCIVTAG 80 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~-~l~~aDivVitag 80 (320)
.||++||.|+.|..+|..+...+. ++..+|+++++++..... ... ...+.+ ..++||+|+++.-
T Consensus 2 ~~Ig~IGlG~MG~~ma~~L~~~g~-~v~v~d~~~~~~~~~~~~----------g~~--~~~s~~e~~~~~dvIi~~l~ 66 (163)
T pfam03446 2 AKIGFIGLGVMGSPMALNLLKAGY-TVTVYNRTPEKVEELVAE----------GAV--AAASPAEAAASADVVITMVP 66 (163)
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHC----------CCE--ECCCHHHHHHCCCEEEEECC
T ss_conf 889998367989999999997799-699997978877999983----------995--53999999861999999258
No 185
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=96.09 E-value=0.1 Score=31.30 Aligned_cols=118 Identities=19% Similarity=0.228 Sum_probs=68.0
Q ss_pred CCCCEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCC-CCCCCCEEEECCCH--------HHH
Q ss_conf 998728998-89-81368999999957998699996578812898830762054-46887568526974--------883
Q gi|254781048|r 1 MKSNKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSP-VEGFGAQLCGTSDY--------SDI 69 (320)
Q Consensus 1 mk~~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~-~~~~~~~v~~~~d~--------~~l 69 (320)
|-+.|+++| |+ +.+|..+|..++..+ +++++.|+++++++..+.++...-. .......+....+. +.+
T Consensus 1 ~L~gK~alITGas~GIG~aia~~la~~G-a~V~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 79 (258)
T PRK12429 1 MLKGKTALVTGAASGIGLEIALALAKEG-AKVVIADLNDEAAAKAAEAIKKAGGKAIGVAMDVTDEEAINAGIDKVVETF 79 (258)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 9895989994887589999999999879-999999798899999999998449918999835899999999999999982
Q ss_pred CCCCEEEEECCCCCCCCC---C---HHHHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 789789995566667655---7---4678998899----9999997654126674088714
Q gi|254781048|r 70 AEADVCIVTAGIPRKPSM---S---RDDLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 70 ~~aDivVitag~~~~~g~---~---R~dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
..-|++|..||....... + -...+..|.. +.+...+.+.+.. .|-+++++
T Consensus 80 g~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~-~G~Iv~is 139 (258)
T PRK12429 80 GGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPHMKAQK-WGRIINMA 139 (258)
T ss_pred CCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHEEEHHHHHHHHHHCC-CCEEEEEC
T ss_conf 9970999899888998815599999999999762321220067777664359-92899987
No 186
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=96.08 E-value=0.059 Score=32.79 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=22.1
Q ss_pred EEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 887148420789999884499865611000525689999999997198
Q gi|254781048|r 116 VICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQEFGV 163 (320)
Q Consensus 116 ~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~l~v 163 (320)
+++=.-|+-.++..+.+..|- .+|+.+ |....|..+|+.+|.
T Consensus 181 lV~GaG~iGl~a~~~ak~~Ga--~~Vi~~----d~~~~rl~~A~~lGa 222 (358)
T TIGR03451 181 AVIGCGGVGDAAIAGAALAGA--SKIIAV----DIDDRKLEWAREFGA 222 (358)
T ss_pred EEECCCHHHHHHHHHHHHCCC--CEEEEE----ECCHHHHHHHHHCCC
T ss_conf 996737699999999998399--189999----198899999996599
No 187
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=96.03 E-value=0.087 Score=31.69 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=33.0
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 9987289988981368999999957998699996578
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
|++.||-|+|+|.+|..++-.+++.++..+.|+|-+.
T Consensus 17 l~~s~Vli~G~~glg~Ei~Knlvl~Gv~~i~i~D~~~ 53 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred HHHCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 9759299999876399999999973996599995996
No 188
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.99 E-value=0.066 Score=32.47 Aligned_cols=122 Identities=13% Similarity=0.174 Sum_probs=62.7
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 99872899889813689999999579986999965788128988307620544688756852697488378978999556
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
|-.+||.|+|.|.-|.+++..+..++ .++..+|...+.... .+..+ .... ...-+-..++|+||++-|
T Consensus 1 ~~~KkvlV~GlG~SG~s~a~~L~~~g-~~v~~~D~~~~~~~~--~~~~~--------~~~~-~~~~~~~~~~d~vv~SPG 68 (418)
T PRK00683 1 MGLQRVVVLGLGVTGKSVARFLAQKG-VYVIGVDNSLEALQS--CPYIH--------ERYL-EGAEEFPEQVDLVVRSPG 68 (418)
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHCC-CEEEEECCCHHHHHH--CCHHH--------HHCC-CCHHHCCCCCCEEEECCC
T ss_conf 99866999808887999999999782-989998298145454--61455--------5405-623324234989998998
Q ss_pred CCCCCCCCHHH-HHHHHHHHHHHHHHHH--HHCCCCCCEEEE--CCCCHH---HHHHHHHHCCCC
Q ss_conf 66676557467-8998899999999765--412667408871--484207---899998844998
Q gi|254781048|r 81 IPRKPSMSRDD-LLADNLKAIEKVGAGI--RKYAPNSFVICI--TNPLDA---MVWALQKFSGLP 137 (320)
Q Consensus 81 ~~~~~g~~R~d-ll~~N~~i~~~i~~~i--~~~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~ 137 (320)
.|.. ..-.. ....+.+|+.++--.. .++.... +|-| ||==-+ |...+.+..|++
T Consensus 69 i~~~--~p~~~~a~~~~i~i~seiel~~~~~~~~~~~-~IaITGTNGKTTTt~ll~~iL~~~g~~ 130 (418)
T PRK00683 69 IKPY--HPWVEAAVALKIPVVTDIQLAFQTPEFQRYP-SLGITGSTGKTTTILFLEHLLRTLGIP 130 (418)
T ss_pred CCCC--CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC-EEEEECCCCCEEHHHHHHHHHHHCCCC
T ss_conf 5998--8999999986997540799997424414798-799976898660999999999867998
No 189
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.98 E-value=0.11 Score=30.99 Aligned_cols=128 Identities=16% Similarity=0.153 Sum_probs=67.9
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEEC--C
Q ss_conf 87289988981368999999957998699996578812898830762054468875685269748837897899955--6
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTA--G 80 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVita--g 80 (320)
..++.|+|+|..+.++++.+...+..++.++.+++++++..+..+.. .. ..+ ....++|++|-|. |
T Consensus 122 ~~~~lilGaGGaarai~~aL~~~G~~~i~I~nR~~~~a~~L~~~~~~-----~~------~~~-~~~~~~dliINaTpvG 189 (272)
T PRK12550 122 DAVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGY-----EW------RPD-LGGIEADLLVNVTPIG 189 (272)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCC-----CC------CCC-CCCCCCCEEEECCCCC
T ss_conf 77389973623389999999976998799998998999999987397-----33------464-3346689799667665
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-CCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHH
Q ss_conf 666765574678998899999999765412667-40887148420789999884499865611000525689999999
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPN-SFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFL 157 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~-~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~i 157 (320)
....|..+...+-. . ...+. .++=++-||-.+--.-.++..|+ .-+=|+++.+-.+-....|
T Consensus 190 m~~~~~~~~~~~~~----------~---~l~~~~~v~D~vY~P~~T~ll~~A~~~G~--~~i~Gl~MLi~Qa~~qF~l 252 (272)
T PRK12550 190 MAGGPEADKLAFSE----------A---EIDAASVVFDVVALPAETPLIRYARARGK--TVITGAEVIALQAVEQFVL 252 (272)
T ss_pred CCCCCCCCCCCCCH----------H---HCCCCCEEEEEECCCCCCHHHHHHHHCCC--CEECCHHHHHHHHHHHHHH
T ss_conf 57897534588997----------8---85888789997438987899999998849--3627699999999999999
No 190
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=95.98 E-value=0.047 Score=33.41 Aligned_cols=75 Identities=27% Similarity=0.341 Sum_probs=44.4
Q ss_pred CEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHH-CCCCEEEEECCC
Q ss_conf 72899889-8136899999995799869999657881289883076205446887568526974883-789789995566
Q gi|254781048|r 4 NKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDI-AEADVCIVTAGI 81 (320)
Q Consensus 4 ~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l-~~aDivVitag~ 81 (320)
-||+|+|| |.||+.+.-++.....-|+..+--. +-.|....-.|- .+.+.....+...+.+++ .++|+++++++.
T Consensus 2 ~kVaIvGAtG~vG~eli~lL~~hp~~ei~~las~--~saGk~i~~~~p-~l~~~~~~~~~~~~~~~~~~~~Divf~alp~ 78 (345)
T PRK00436 2 IKVAIVGASGYTGGELLRLLLNHPEVEIVYLTSR--SSAGKPLSDLHP-HLRGLVDLVLEPLDPEEIAAGADVVFLALPH 78 (345)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECC--CCCCCCHHHHCC-CCCCCCCCEEEECCHHHHCCCCCEEEECCCH
T ss_conf 1999989661889999999980998679999757--868973778581-1037778747649988942699999988983
No 191
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=95.97 E-value=0.087 Score=31.70 Aligned_cols=91 Identities=22% Similarity=0.358 Sum_probs=54.3
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCC-CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 98728998898136899999995799-86999965788128988307620544688756852697488378978999556
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKL-GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l-~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
+.++++|||.|++|+.+|..+. +. .++..+|+... .+.+.. + ... .....+-++.||++++...
T Consensus 145 ~gktvGIiG~GrIG~avA~r~~--~Fgm~v~y~~~~~~-~~~~~~-~---------~~~--y~~l~ell~~sDii~l~~P 209 (324)
T COG1052 145 RGKTLGIIGLGRIGQAVARRLK--GFGMKVLYYDRSPN-PEAEKE-L---------GAR--YVDLDELLAESDIISLHCP 209 (324)
T ss_pred CCCEEEEECCCHHHHHHHHHHH--CCCCEEEEECCCCC-HHHHHH-C---------CCE--ECCHHHHHHHCCEEEEECC
T ss_conf 7888899784889999999872--17968998668874-555740-5---------860--4168999976999999779
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 6667655746789988999999997654126674088714
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
-.+. ||. ++ |. +.+++..|.+++++++
T Consensus 210 --lt~~-T~h-Li--n~-------~~l~~mk~ga~lVNta 236 (324)
T COG1052 210 --LTPE-TRH-LI--NA-------EELAKMKPGAILVNTA 236 (324)
T ss_pred --CCHH-HHH-HC--CH-------HHHHHCCCCEEEEECC
T ss_conf --9837-665-32--99-------9997568976999648
No 192
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.95 E-value=0.041 Score=33.78 Aligned_cols=71 Identities=23% Similarity=0.408 Sum_probs=46.5
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHH-CC--CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEE
Q ss_conf 9872899889-8136899999995-79--986999965788128988307620544688756852697488378978999
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVL-KK--LGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIV 77 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~-~~--l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVi 77 (320)
|+.+|+|+|| |.||+.+..+|.. .. +.++.++.-.. -.|+... +.+....+. ..+..++.++|++++
T Consensus 4 k~~nVaIvGATG~VG~~li~lL~~h~~f~v~~v~~~aS~~--saGk~v~------~~~~~~~v~-~~~~~~~~~~Divf~ 74 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKR--SAGKTVQ------FKGREIIIQ-EAKINSFEGVDIAFF 74 (347)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEECCC--CCCCCEE------ECCCEEEEE-ECCHHHHHCCCEEEE
T ss_conf 8877999988039999999999727898751079986587--7997626------899278998-578446516978997
Q ss_pred ECCC
Q ss_conf 5566
Q gi|254781048|r 78 TAGI 81 (320)
Q Consensus 78 tag~ 81 (320)
+++.
T Consensus 75 a~~~ 78 (347)
T PRK06728 75 SAGG 78 (347)
T ss_pred CCCH
T ss_conf 6857
No 193
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.88 E-value=0.013 Score=37.02 Aligned_cols=37 Identities=22% Similarity=0.405 Sum_probs=33.2
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 9987289988981368999999957998699996578
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
+++.||.|+|+|.||+.++..|+..++..|.|+|-+.
T Consensus 9 l~~s~V~v~G~GGvGs~~a~~LarsGVG~l~lvD~D~ 45 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred HHCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCE
T ss_conf 8549789988863689999999980997599971999
No 194
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.87 E-value=0.12 Score=30.85 Aligned_cols=124 Identities=22% Similarity=0.253 Sum_probs=68.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCC
Q ss_conf 98728998898136899999995799869999657881289883076205446887568526974883789789995566
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGI 81 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~ 81 (320)
|.+||.|+|.|.-|.++|..+...+ .++..+|.+++.... +.. .+... ..-...+..+.|.+|++.|+
T Consensus 8 ~gk~v~v~GlG~sG~s~a~~L~~~G-~~V~~~D~~~~~~~~----~~~----~g~~~---~~~~~~~~~~~~~iV~SPGI 75 (457)
T PRK01390 8 KGKTVALFGLGGSGLATARALKAGG-AEVIAWDDNPDSVAK----AAA----AGIAT---ADLRTADWSQFAALVLSPGV 75 (457)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCHHHHH----HHH----CCCCC---CCCCCCCCCCCCEEEECCCC
T ss_conf 8998999943699999999999789-979999399206689----987----59831---45541232038789999988
Q ss_pred CCCCCCCH--HHHH-HHHHHHHHHHHH---HHHHCCCCCCEEEE--CCCCHH---HHHHHHHHCCCC
Q ss_conf 66765574--6789-988999999997---65412667408871--484207---899998844998
Q gi|254781048|r 82 PRKPSMSR--DDLL-ADNLKAIEKVGA---GIRKYAPNSFVICI--TNPLDA---MVWALQKFSGLP 137 (320)
Q Consensus 82 ~~~~g~~R--~dll-~~N~~i~~~i~~---~i~~~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~ 137 (320)
|..--..+ ...+ +.+.+|+.++-- ....+.++..+|-| ||==-+ |...+.+..|++
T Consensus 76 p~~~p~~~~~v~~a~~~gi~v~seielf~~~~~~~~~~~~iIaVTGTnGKTTTtsli~~iL~~~g~~ 142 (457)
T PRK01390 76 PLTHPKPHWTVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHLLRQAGRD 142 (457)
T ss_pred CCCCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 8656673199999998599186008999999873257898899928996498999999999973998
No 195
>pfam01073 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family. The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones.
Probab=95.87 E-value=0.12 Score=30.89 Aligned_cols=102 Identities=21% Similarity=0.216 Sum_probs=63.6
Q ss_pred EEC-CCCHHHHHHHHHHHCCC-CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEE--ECCCH----HHHCCCCEEEEEC
Q ss_conf 988-98136899999995799-8699996578812898830762054468875685--26974----8837897899955
Q gi|254781048|r 8 LIG-SGMIGGTLAHLAVLKKL-GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLC--GTSDY----SDIAEADVCIVTA 79 (320)
Q Consensus 8 IIG-aG~VG~~~a~~~~~~~l-~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~--~~~d~----~~l~~aDivVita 79 (320)
|.| +|.+|++++..|+..+- .++..+|+..... ...++... . ..... -..|. +.++++|+|+-.|
T Consensus 2 VTGg~GFIGs~lv~~Ll~~g~~~~V~~~d~~~~~~--~~~~~~~~----~-~~~~v~gDl~d~~~l~~~~~~~D~V~H~A 74 (280)
T pfam01073 2 VTGGGGFLGRHIVRLLLREGELQEVRVFDLRFSPE--LLEDFSKL----Q-VITYIEGDVTDKQDLRRALQGSDVVIHTA 74 (280)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHH--HHHHHCCC----C-CCEEEECCCCCHHHHHHHHHCCCEEEEEC
T ss_conf 05867599999999999779975799987889867--88873225----8-87599912899999999984799899721
Q ss_pred CCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 6666765-574678998899999999765412667408
Q gi|254781048|r 80 GIPRKPS-MSRDDLLADNLKAIEKVGAGIRKYAPNSFV 116 (320)
Q Consensus 80 g~~~~~g-~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ 116 (320)
+...-.+ ..+.++++.|..-.+.+.+..++.+-.-++
T Consensus 75 a~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V 112 (280)
T pfam01073 75 AIIDVFGKAYRDTIMKVNVKGTQNVLDACVKAGVRVLV 112 (280)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 22355566799999999999999999999964777079
No 196
>PRK09072 short chain dehydrogenase; Provisional
Probab=95.86 E-value=0.094 Score=31.48 Aligned_cols=114 Identities=20% Similarity=0.209 Sum_probs=69.4
Q ss_pred CCCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH----------HHH
Q ss_conf 99872899889-8136899999995799869999657881289883076205446887568526974----------883
Q gi|254781048|r 1 MKSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY----------SDI 69 (320)
Q Consensus 1 mk~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~----------~~l 69 (320)
|+.+.|-|.|| +.+|.++|..++..+. .+++.++++++++..+.++...- . .....-..|. +..
T Consensus 3 l~~K~vlITGassGIG~a~A~~la~~G~-~vil~~R~~~~L~~~~~~l~~~~-~---~~~~~Dls~~~~~~~~~~~~~~~ 77 (262)
T PRK09072 3 LKDKRVLLTGASGGIGEALAEALCAAGA-RLLLVGRNAEKLEALAARPYPGR-V---RWVVADLTSEAGREAVLARAREM 77 (262)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHCCCC-E---EEEEEECCCHHHHHHHHHHHHHH
T ss_conf 8998899948623999999999998799-89999898999999999845897-6---99997179999999999999984
Q ss_pred CCCCEEEEECCCCCCCCC---C---HHHHHHHHH----HHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 789789995566667655---7---467899889----99999997654126674088714
Q gi|254781048|r 70 AEADVCIVTAGIPRKPSM---S---RDDLLADNL----KAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 70 ~~aDivVitag~~~~~g~---~---R~dll~~N~----~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
-.-|++|..||....... + -.++++.|. .+.+...+.+++.. .|.+++++
T Consensus 78 g~iDiLInNAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~lt~~~lp~m~~~~-~G~Ivnis 137 (262)
T PRK09072 78 GGINVLINNAGVNHFALLDQQDPEAIDRLLALNLTAPMQLTRALLPLLRAQP-SAAVVNVG 137 (262)
T ss_pred CCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEC
T ss_conf 9998999899778898635499999999999956899999999999998769-94899966
No 197
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.83 E-value=0.07 Score=32.31 Aligned_cols=116 Identities=15% Similarity=0.187 Sum_probs=67.4
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH--------HHHCCC
Q ss_conf 9872899889-8136899999995799869999657881289883076205446887568526974--------883789
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY--------SDIAEA 72 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~--------~~l~~a 72 (320)
|.+.+-|.|+ +.+|..+|..++..+ +++++.|+++++++..+.++.... ...+...+....+. +.+..-
T Consensus 5 ~gK~alITGgs~GIG~aia~~la~~G-~~V~i~~r~~~~~~~~~~~~~~~~-~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 82 (250)
T PRK07231 5 EGKVAIVTGAGSGFGEGIARRFAAEG-ARVVVTDRNQEAAERVAAEIRGGR-AIAVAADVSDEADVRAAVEAALERFGSV 82 (250)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHCCCC-EEEEEEECCCHHHHHHHHHHHHHHHCCC
T ss_conf 99889993888689999999999879-999999798899999999844996-7999930799999999999999981997
Q ss_pred CEEEEECCCCC--CCC--CCHHH---HHHHHH----HHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 78999556666--765--57467---899889----99999997654126674088714
Q gi|254781048|r 73 DVCIVTAGIPR--KPS--MSRDD---LLADNL----KAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 73 DivVitag~~~--~~g--~~R~d---ll~~N~----~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
|++|..||... +|- .+..+ .++.|. .+.+.+.+.+++.. .|.++.++
T Consensus 83 D~lInnAG~~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~-~G~Iinis 140 (250)
T PRK07231 83 DILVNNAGTTHRNGPLLDVDEAEFDRVYAVNVKSIYLWAQAAVPAWRGEG-GGAIVNVA 140 (250)
T ss_pred CEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEE
T ss_conf 19998883378998927699999999999998999999999999999839-96499994
No 198
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=95.80 E-value=0.02 Score=35.78 Aligned_cols=94 Identities=22% Similarity=0.289 Sum_probs=55.8
Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEE-CCC---HH--HHCCCCEEEEEC
Q ss_conf 899889813689999999579986999965788128988307620544688756852-697---48--837897899955
Q gi|254781048|r 6 IALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCG-TSD---YS--DIAEADVCIVTA 79 (320)
Q Consensus 6 V~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~-~~d---~~--~l~~aDivVita 79 (320)
|.|+|.|.+|..++-.+..++ +++++|.++++++....+..+ .+.+ ..+ ++ .+.+||.+|++.
T Consensus 1 viI~G~g~~G~~la~~L~~~~--~v~vId~d~~~~~~~~~~~~~---------vi~GD~~~~~~L~~a~i~~a~~vi~~~ 69 (115)
T pfam02254 1 IIIIGYGRVGRSLAEELREGG--PVVVIDKDPERVEELREEGVP---------VVVGDATDEEVLEEAGIEDADAVVAAT 69 (115)
T ss_pred CEEECCCHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHCCCE---------EEEEECCCHHHHHHHCCCCCCEEEEEC
T ss_conf 999878889999999998089--999999987998778866986---------999956886678761920287999962
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-CEEEECCCCHH
Q ss_conf 66667655746789988999999997654126674-08871484207
Q gi|254781048|r 80 GIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNS-FVICITNPLDA 125 (320)
Q Consensus 80 g~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~-i~ivvtNPvDv 125 (320)
+-. +.|..+. ..+++.+|+. ++..+.||-+.
T Consensus 70 ~~d-----------~~n~~~~----~~~r~~~~~~~iiar~~~~~~~ 101 (115)
T pfam02254 70 GDD-----------EANILIV----LLARELNPAKKIIARANDPEHA 101 (115)
T ss_pred CCH-----------HHHHHHH----HHHHHHCCCCEEEEEECCHHHH
T ss_conf 984-----------9999999----9999978998099998789999
No 199
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.80 E-value=0.014 Score=36.82 Aligned_cols=36 Identities=25% Similarity=0.514 Sum_probs=32.1
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 998728998898136899999995799869999657
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIV 36 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~ 36 (320)
+++.||.|||+|.+|+++|..++.-++.+|.|+|.+
T Consensus 22 L~~a~VlVvGaGGLGs~~a~~La~aGVG~i~ivD~D 57 (339)
T PRK07688 22 IREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HHCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 862978998777777999999998489829998099
No 200
>PRK06720 hypothetical protein; Provisional
Probab=95.80 E-value=0.14 Score=30.34 Aligned_cols=115 Identities=18% Similarity=0.213 Sum_probs=65.1
Q ss_pred CEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCC-CCCCCEEEECCCH--------HHHCCC
Q ss_conf 728998-89-813689999999579986999965788128988307620544-6887568526974--------883789
Q gi|254781048|r 4 NKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPV-EGFGAQLCGTSDY--------SDIAEA 72 (320)
Q Consensus 4 ~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~-~~~~~~v~~~~d~--------~~l~~a 72 (320)
.|+++| |+ +.+|..+|..++..+ +.+++.|+++++++..+.++...-.- ......+....+. +....-
T Consensus 16 gKvalITGa~~GIG~a~A~~la~~G-a~Vvi~d~~~~~~~~~~~~i~~~g~~a~~~~~Dvs~~~~v~~~i~~~~~~~g~i 94 (169)
T PRK06720 16 GKVAIVTGGGIGIGRNTALLLAKQG-AKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSRI 94 (169)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9999998975489999999999869-989995276365999999999749953789758899999999999999975989
Q ss_pred CEEEEECCCCCCCCC---CHH---HHHHHHHHH--HHHHHHHHHHCCCCCCEEEEC
Q ss_conf 789995566667655---746---789988999--999997654126674088714
Q gi|254781048|r 73 DVCIVTAGIPRKPSM---SRD---DLLADNLKA--IEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 73 DivVitag~~~~~g~---~R~---dll~~N~~i--~~~i~~~i~~~~p~~i~ivvt 120 (320)
|++|--||..+.... +.. +++..|.-. ++...+.+.+.. .|.+|+++
T Consensus 95 DiLvNNAGI~~~~~~~~~~~e~~~~v~~vN~v~~~~k~~~~~m~kq~-~G~IIN~a 149 (169)
T PRK06720 95 DMLFQNAGLYKIDSIFSRQQENDSNVLCINDVWIEIKQLTSSFMKQQ-EEVVLSDL 149 (169)
T ss_pred CEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEC
T ss_conf 98998942178876001798999999988759999999999999759-97899988
No 201
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=95.80 E-value=0.14 Score=30.44 Aligned_cols=115 Identities=16% Similarity=0.116 Sum_probs=67.6
Q ss_pred EEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH--------HHHCCCCEE
Q ss_conf 2899889-8136899999995799869999657881289883076205446887568526974--------883789789
Q gi|254781048|r 5 KIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY--------SDIAEADVC 75 (320)
Q Consensus 5 KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~--------~~l~~aDiv 75 (320)
+|-|.|+ +.+|..+|..++..+ +++++.|+++++++..+.++.+..........+....+. +.+-.-|++
T Consensus 2 nVlITGas~GIG~aiA~~la~~G-a~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~Dv~~~~~v~~~v~~~~~~~G~iD~L 80 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKG-ARVVISSRNEENLEKALKELKELGEVYAIKADLSDKDDLKNLVKEAWELLGGIDAL 80 (259)
T ss_pred EEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf 89997587789999999999879-99999979989999999998741887999963699899999999999985998889
Q ss_pred EEECCCCC-CC----CCCHHHH---HHHHH----HHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 99556666-76----5574678---99889----99999997654126674088714
Q gi|254781048|r 76 IVTAGIPR-KP----SMSRDDL---LADNL----KAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 76 Vitag~~~-~~----g~~R~dl---l~~N~----~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
|..||... .| ..+..|. +..|. .+.+...+...+....|.+++++
T Consensus 81 VnNAg~~~~~p~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~G~Ii~is 137 (259)
T PRK08340 81 VWNAGNVKCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLLQTWLEKKMKGVLVYLS 137 (259)
T ss_pred EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 985766778974335499999999999871559999999999999865886499972
No 202
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=95.77 E-value=0.037 Score=34.08 Aligned_cols=69 Identities=22% Similarity=0.273 Sum_probs=45.8
Q ss_pred CCCCEEEEECCCCHHHH-HHHHH-HHCC-CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHH-CC--CCE
Q ss_conf 99872899889813689-99999-9579-9869999657881289883076205446887568526974883-78--978
Q gi|254781048|r 1 MKSNKIALIGSGMIGGT-LAHLA-VLKK-LGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDI-AE--ADV 74 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~-~a~~~-~~~~-l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l-~~--aDi 74 (320)
|++-||+|||+|.+++. .+-.+ .... +.-..++|+++++++..+.++.- . ...+||+++ ++ .|+
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~-------~---~~~~~~~~ll~~~~iD~ 70 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGI-------A---KAYTDLEELLADPDIDA 70 (342)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCC-------C---CCCCCHHHHHCCCCCCE
T ss_conf 9932799989876788888999973887469999964998999999998199-------7---45299999945999988
Q ss_pred EEEEC
Q ss_conf 99955
Q gi|254781048|r 75 CIVTA 79 (320)
Q Consensus 75 vVita 79 (320)
|+|+.
T Consensus 71 V~Iat 75 (342)
T COG0673 71 VYIAT 75 (342)
T ss_pred EEEEC
T ss_conf 99969
No 203
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=95.77 E-value=0.019 Score=35.98 Aligned_cols=128 Identities=16% Similarity=0.262 Sum_probs=73.8
Q ss_pred CCEEEEECCCCHHHHHHHHH----HHCCCC------EEEEEECCCCCHHHHHHHHHHHC-CCCCCCCEEEECCCH-HHHC
Q ss_conf 87289988981368999999----957998------69999657881289883076205-446887568526974-8837
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLA----VLKKLG------DVVLLDIVDGMPRGKALDIAESS-PVEGFGAQLCGTSDY-SDIA 70 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~----~~~~l~------ei~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~~v~~~~d~-~~l~ 70 (320)
.-||.|.|||.-|..++.++ ...+++ .+.++|..--..++. .|+.+.. .|...... ....+. +.++
T Consensus 25 d~riv~~GAGsAg~gia~~l~~~~~~~G~~~eeA~~~i~~~D~~Gli~~~r-~dl~~~k~~~a~~~~~-~~~~~L~e~v~ 102 (279)
T cd05312 25 DQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDR-KDLTPFKKPFARKDEE-KEGKSLLEVVK 102 (279)
T ss_pred HCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHCEEEEECCCCEEECCC-CCCHHHHHHHHHHCCC-CCCCCHHHHHH
T ss_conf 737999797589999999999999985999788617099965887531799-9864999999874745-68999999997
Q ss_pred CC--CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC---HHHHHHHHHHCCCCHHHHHHHC
Q ss_conf 89--789995566667655746789988999999997654126674088714842---0789999884499865611000
Q gi|254781048|r 71 EA--DVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPL---DAMVWALQKFSGLPSHMVVGMA 145 (320)
Q Consensus 71 ~a--DivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPv---Dv~~~~~~~~sg~~~~rViG~G 145 (320)
++ |+.|=+.+.| |- + =+++.+.++++++..+++-.|||. ..+...+++++. -..+|.+|
T Consensus 103 ~~kp~vlIG~S~~~---g~-----f------t~e~v~~Ma~~~e~PIIFaLSNPt~~~E~~peda~~~t~--G~aivATG 166 (279)
T cd05312 103 AVKPTVLIGLSGVG---GA-----F------TEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD--GRALFASG 166 (279)
T ss_pred HCCCCEEEEECCCC---CC-----C------CHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHCC--CCEEEEEC
T ss_conf 24897799806898---97-----7------999999998459997799637997667889999986226--98899838
Q ss_pred CCH
Q ss_conf 525
Q gi|254781048|r 146 GIL 148 (320)
Q Consensus 146 t~L 148 (320)
+-.
T Consensus 167 Spf 169 (279)
T cd05312 167 SPF 169 (279)
T ss_pred CCC
T ss_conf 987
No 204
>pfam03949 Malic_M Malic enzyme, NAD binding domain.
Probab=95.77 E-value=0.046 Score=33.48 Aligned_cols=131 Identities=18% Similarity=0.319 Sum_probs=77.7
Q ss_pred CCEEEEECCCCHHHHHHHHHHH----CCCC------EEEEEECCCCCHHHHHHHHHHH-CCCCCCCCEEEECCCH-HHHC
Q ss_conf 8728998898136899999995----7998------6999965788128988307620-5446887568526974-8837
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVL----KKLG------DVVLLDIVDGMPRGKALDIAES-SPVEGFGAQLCGTSDY-SDIA 70 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~----~~l~------ei~L~D~~~~~~~g~~~Dl~~~-~~~~~~~~~v~~~~d~-~~l~ 70 (320)
.-||.+.|+|.-|..++.++.. .+++ .+.++|..--..++. -||.+. ..|..........++. +.++
T Consensus 25 d~riv~~GAGsAg~gia~~l~~~~~~~G~~~~eA~~~i~~~D~~Gll~~~r-~~l~~~k~~~a~~~~~~~~~~~L~e~v~ 103 (255)
T pfam03949 25 DQKIVFFGAGAAGIGIAELLVAAMVREGLSEEEARKNIWMVDRKGLLTEGR-EDLNPFKKPFARKTNEVKGWGTLAEAVK 103 (255)
T ss_pred HCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHCCEEEECCCCEEECCC-CCCHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 828999797889999999999999876999788736589975977455899-8855999999753765556699999986
Q ss_pred CC--CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCH---HHHHHHHHHCCCCHHHHHHHC
Q ss_conf 89--7899955666676557467899889999999976541266740887148420---789999884499865611000
Q gi|254781048|r 71 EA--DVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLD---AMVWALQKFSGLPSHMVVGMA 145 (320)
Q Consensus 71 ~a--DivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvD---v~~~~~~~~sg~~~~rViG~G 145 (320)
++ |+.|=+.|.| | ++. +++.+.+.+++++.+++-.|||.. .+...+++++. ..=+|.+|
T Consensus 104 ~~kP~vlIG~S~~~---g-----~ft------~evv~~Ma~~~~~PIIFaLSNPt~~aE~~peda~~~t~--G~ai~ATG 167 (255)
T pfam03949 104 GAKPDVLIGVSGVP---G-----VFT------EEIVRAMAEHTERPIIFALSNPTPKAEITPEEAYKWTA--GRALFATG 167 (255)
T ss_pred CCCCCEEEEECCCC---C-----CCC------HHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHCC--CEEEEEEC
T ss_conf 26887799816888---9-----889------99999998169998487668989877779899998549--92899858
Q ss_pred CCHHH
Q ss_conf 52568
Q gi|254781048|r 146 GILDS 150 (320)
Q Consensus 146 t~LDs 150 (320)
+-.+.
T Consensus 168 Spf~p 172 (255)
T pfam03949 168 SPFPP 172 (255)
T ss_pred CCCCC
T ss_conf 98776
No 205
>KOG1502 consensus
Probab=95.76 E-value=0.18 Score=29.63 Aligned_cols=169 Identities=16% Similarity=0.175 Sum_probs=93.2
Q ss_pred CCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCC-CHHHHHHHHHHHCCC-CCCCCEEEECCCH-HHHCCCCEEEEE
Q ss_conf 872899889-813689999999579986999965788-128988307620544-6887568526974-883789789995
Q gi|254781048|r 3 SNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDG-MPRGKALDIAESSPV-EGFGAQLCGTSDY-SDIAEADVCIVT 78 (320)
Q Consensus 3 ~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~-~~~g~~~Dl~~~~~~-~~~~~~v~~~~d~-~~l~~aDivVit 78 (320)
..+|-|.|| |.+|+.+...|+.++-.=...+.-.++ +-..+..+|+.+-.. ..+...+...+.+ +++.+||.|+=+
T Consensus 6 ~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH~ 85 (327)
T KOG1502 6 GKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFHT 85 (327)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHCCCEEEEE
T ss_conf 72799948820899999999986899899997086305658999865157544258852435513599997078789991
Q ss_pred CCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHH--------
Q ss_conf 566667655-74678998899999999765412667408871484207899998844998656110005256--------
Q gi|254781048|r 79 AGIPRKPSM-SRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILD-------- 149 (320)
Q Consensus 79 ag~~~~~g~-~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LD-------- 149 (320)
|....-... ...+++.-.++=...+.+.++++. .-.=+|+|. .++.+.+.....+.+.++---++-|
T Consensus 86 Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TS---S~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~~ 161 (327)
T KOG1502 86 ASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTS---STAAVRYNGPNIGENSVVDEESWSDLDFCRCKK 161 (327)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEC---CHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 7667877787477663178888999999986058-722699961---478711477678888545655578188887667
Q ss_pred ---------HHHHHHHHHHHCCCCCCCC-EEEEECC
Q ss_conf ---------8999999999719873355-0567507
Q gi|254781048|r 150 ---------SARFRYFLAQEFGVSVESV-TALVLGS 175 (320)
Q Consensus 150 ---------s~R~~~~ia~~l~v~~~~V-~~~ViGe 175 (320)
.-+.-+..|+.-+.+--.+ -++|+|-
T Consensus 162 ~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP 197 (327)
T KOG1502 162 LWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGP 197 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEECC
T ss_conf 788999999999999999857961899668713797
No 206
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=95.71 E-value=0.056 Score=32.93 Aligned_cols=71 Identities=14% Similarity=0.277 Sum_probs=51.4
Q ss_pred CEEEEECCCCHHHHHHH-HHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEEEC
Q ss_conf 72899889813689999-9995799869999657881289883076205446887568526974-8837897899955
Q gi|254781048|r 4 NKIALIGSGMIGGTLAH-LAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIVTA 79 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~-~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVita 79 (320)
.-++|||+|..+..-.. .....++.+|.+++++++.++..+.++..-- + ..+....+. +++++||||+-+-
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~---~--~~v~a~~s~~~av~~aDiIvt~T 203 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRG---G--EAVGAADSAEEAVEGADIVVTAT 203 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHC---C--CCCEECCCHHHHHHCCCEEEEEC
T ss_conf 5799988848999999999962896189997689899999999987633---8--65132368998861399899942
No 207
>PRK07208 hypothetical protein; Provisional
Probab=95.68 E-value=0.014 Score=36.87 Aligned_cols=63 Identities=19% Similarity=0.153 Sum_probs=41.9
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf 99872899889813689999999579986999965788128988307620544688756852697
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSD 65 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d 65 (320)
|+++||.|||||-.|-++|+.|...+. ++.+++..+ .+-|.+....+--......++++.+.+
T Consensus 1 ~~~kkv~IiGAG~~GL~aA~~L~~~g~-~v~vlEk~~-~vGGl~~t~~~~G~~~d~G~H~f~s~~ 63 (474)
T PRK07208 1 TEKKSVVIIGAGPAGLTAAYELVKRGY-PVTILEADP-EVGGISRTVTYKGYRFDIGGHRFFTKS 63 (474)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCC-CCCCEEEEEEECCEEEEECCCEECCCC
T ss_conf 998759998976899999999986899-759997899-875447788989989984780548897
No 208
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ; InterPro: IPR012802 Members of this family represent the alpha subunit of the multifunctional enzyme complex of the fatty acid degradation cycle, which plays a minor role in aerobic beta-oxidation of fatty acids. The FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (4.2.1.17 from EC), 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC), and 3-hydroxybutyryl-CoA epimerase (5.1.2.3 from EC). A representative is the Escherichia coli FadJ protein (also named YfcX) (P77399 from SWISSPROT). This entry excludes FadB of IPR012799 from INTERPRO.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004300 enoyl-CoA hydratase activity, 0008692 3-hydroxybutyryl-CoA epimerase activity, 0051287 NAD binding, 0006635 fatty acid beta-oxidation, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=95.67 E-value=0.043 Score=33.68 Aligned_cols=104 Identities=20% Similarity=0.300 Sum_probs=61.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCH-HH--HHHHHHHH---------CCCCCCCCEEEECCCHHHHCC
Q ss_conf 7289988981368999999957998699996578812-89--88307620---------544688756852697488378
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMP-RG--KALDIAES---------SPVEGFGAQLCGTSDYSDIAE 71 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~-~g--~~~Dl~~~---------~~~~~~~~~v~~~~d~~~l~~ 71 (320)
+||+|+|-|-.|+-+|+.-+.+-=-.+-+=||+++=. .+ -.+|+-|- +..-..-.-+++++||..+++
T Consensus 308 ~~vgvLGGGLMGGGIa~VTatkAg~PvRiKDIn~~Gi~~AL~Y~~~~L~k~vkrr~~~~~e~~~~m~li~g~T~y~Gf~~ 387 (732)
T TIGR02440 308 KKVGVLGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKKVKRRHMKPAERDNQMALITGTTDYRGFKD 387 (732)
T ss_pred CEEEEECCCCCCCCCCCHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCEEEEECCCCCCCEEC
T ss_conf 43367347645663011322027884488634965676898785987268400001564563241354333632122001
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf 978999556666765574678998899999999765412667408871484
Q gi|254781048|r 72 ADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNP 122 (320)
Q Consensus 72 aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNP 122 (320)
+||||-+.=. |..+=....+.|.+.| ....|.+||-
T Consensus 388 ~D~vvEAVFE--------------dl~LK~QMV~diE~~~-~~hTIFASNT 423 (732)
T TIGR02440 388 VDIVVEAVFE--------------DLELKHQMVKDIEREC-AAHTIFASNT 423 (732)
T ss_pred CCEEEEEEEC--------------CHHHHHHHHHHHHHCC-CCEEEEEECC
T ss_conf 4469987603--------------5021233789996156-7703553144
No 209
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=95.66 E-value=0.11 Score=31.00 Aligned_cols=162 Identities=17% Similarity=0.249 Sum_probs=92.3
Q ss_pred CCCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEC-----CCHH----HH-
Q ss_conf 99872899889-8136899999995799869999657881289883076205446887568526-----9748----83-
Q gi|254781048|r 1 MKSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGT-----SDYS----DI- 69 (320)
Q Consensus 1 mk~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~-----~d~~----~l- 69 (320)
|+.+.+.|.|| +.+|..+|..++.++ .+++|+.+++++++..+.+|++-. +....+... ++.+ ++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g-~~liLvaR~~~kL~~la~~l~~~~---~v~v~vi~~DLs~~~~~~~l~~~l~ 79 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRG-YNLILVARREDKLEALAKELEDKT---GVEVEVIPADLSDPEALERLEDELK 79 (265)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHH---CCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 778679997788648999999999779-979999676999999999998730---8627999776788367999999998
Q ss_pred ---CCCCEEEEECCCCCCC------CCCHHHHHHHHHHHHHH----HHHHHHHCCCCCCEEEEC-----CCCHH-HHHHH
Q ss_conf ---7897899955666676------55746789988999999----997654126674088714-----84207-89999
Q gi|254781048|r 70 ---AEADVCIVTAGIPRKP------SMSRDDLLADNLKAIEK----VGAGIRKYAPNSFVICIT-----NPLDA-MVWAL 130 (320)
Q Consensus 70 ---~~aDivVitag~~~~~------g~~R~dll~~N~~i~~~----i~~~i~~~~p~~i~ivvt-----NPvDv-~~~~~ 130 (320)
...|+.|..||.-.-. ...-.+.++-|.--+-. +.+.+.+.+ .|-+|+++ .|..- -+|.+
T Consensus 80 ~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~-~G~IiNI~S~ag~~p~p~~avY~A 158 (265)
T COG0300 80 ERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERG-AGHIINIGSAAGLIPTPYMAVYSA 158 (265)
T ss_pred HCCCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEECHHHCCCCCCHHHHHH
T ss_conf 2488523899778747766542188589999999999999999999999998658-966999843453288863279999
Q ss_pred HHHCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECC
Q ss_conf 8844998656110005256899999999971987335505675078852465102
Q gi|254781048|r 131 QKFSGLPSHMVVGMAGILDSARFRYFLAQEFGVSVESVTALVLGSHGDSMVPMLR 185 (320)
Q Consensus 131 ~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~l~v~~~~V~~~ViGeHGds~vp~~S 185 (320)
.|. -|.+ .-++.| .++ .+..|+..++.- |.+.-..|.
T Consensus 159 TKa------~v~~---fSeaL~--~EL------~~~gV~V~~v~P-G~~~T~f~~ 195 (265)
T COG0300 159 TKA------FVLS---FSEALR--EEL------KGTGVKVTAVCP-GPTRTEFFD 195 (265)
T ss_pred HHH------HHHH---HHHHHH--HHH------CCCCEEEEEEEC-CCCCCCCCC
T ss_conf 999------9999---999999--983------589849999965-733355333
No 210
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=95.62 E-value=0.021 Score=35.71 Aligned_cols=129 Identities=20% Similarity=0.321 Sum_probs=73.2
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCCCC
Q ss_conf 28998898136899999995799869999657881289883076205446887568526974883789789995566667
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIPRK 84 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~~~ 84 (320)
||-|+|+|.+|..++..+++.++.+|.++|.+.- |++ +.+.... .+..|+ |.
T Consensus 1 KVlvvGaGglGce~~k~La~~Gvg~i~iiD~D~I-------e~S------NLnRQfL-------f~~~dv-----Gk--- 52 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTI-------DVS------NLNRQFL-------FRPKDI-----GR--- 52 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCEE-------CCC------CCCHHHC-------CCCCCC-----CC---
T ss_conf 9899948887999999999839986999759900-------567------7013024-------464426-----88---
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC---HHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 655746789988999999997654126674088714842---07899998844998656110005256899999999971
Q gi|254781048|r 85 PSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPL---DAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQEF 161 (320)
Q Consensus 85 ~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPv---Dv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~l 161 (320)
+..+. .++.+.+.+|+.-+.-..+.+ +.....+++. |+ =|+ .-||+.-.|+++.+..
T Consensus 53 ---~Ka~v----------Aa~~l~~~Np~~~I~~~~~~v~~e~~~~~~f~~~--~D--vVi---~alDN~~aR~~vN~~c 112 (234)
T cd01484 53 ---PKSEV----------AAEAVNDRNPNCKVVPYQNKVGPEQDFNDTFFEQ--FH--IIV---NALDNIIARRYVNGML 112 (234)
T ss_pred ---CHHHH----------HHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHH--CC--EEE---ECCCCHHHHHHHHHHH
T ss_conf ---22999----------9999998789977999805568621057988852--99--999---8857888999999999
Q ss_pred CC-CCCCCEEEEECCCCCEEE
Q ss_conf 98-733550567507885246
Q gi|254781048|r 162 GV-SVESVTALVLGSHGDSMV 181 (320)
Q Consensus 162 ~v-~~~~V~~~ViGeHGds~v 181 (320)
-. ...-|++=+.|-.|..++
T Consensus 113 ~~~~~PLIegGt~G~~Gqv~~ 133 (234)
T cd01484 113 IFLIVPLIESGTEGFKGNAQV 133 (234)
T ss_pred HHHCCCEEEECCCCCEEEEEE
T ss_conf 980998597202461479999
No 211
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.62 E-value=0.053 Score=33.07 Aligned_cols=132 Identities=11% Similarity=0.156 Sum_probs=75.5
Q ss_pred CCEEEEECCCCHHHHHHHHHH----HCCCC------EEEEEECCCCCHHHHHHHHHHH-CCCCCCCCEEEECCCHH-HHC
Q ss_conf 872899889813689999999----57998------6999965788128988307620-54468875685269748-837
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAV----LKKLG------DVVLLDIVDGMPRGKALDIAES-SPVEGFGAQLCGTSDYS-DIA 70 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~----~~~l~------ei~L~D~~~~~~~g~~~Dl~~~-~~~~~~~~~v~~~~d~~-~l~ 70 (320)
.-||.|.|||.-|..++.++. ..+++ .+.++|..--..++. .|+.+. ..+..+........+.. .++
T Consensus 25 d~riv~~GAGsAg~gia~~l~~~~~~~Gl~~~ea~~~i~lvD~~GLl~~~r-~~~~~~~~~~~~~~~~~~~~~~L~e~v~ 103 (254)
T cd00762 25 EHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNR-KETCPNEYHLARFANPERESGDLEDAVE 103 (254)
T ss_pred HCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHCCEEEECCCCCEECCC-CCCCHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 858999883299999999999986432653243321078853777325797-5458888999986476776799999998
Q ss_pred --CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCH---HHHHHHHHHCCCCHHHHHHHC
Q ss_conf --897899955666676557467899889999999976541266740887148420---789999884499865611000
Q gi|254781048|r 71 --EADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLD---AMVWALQKFSGLPSHMVVGMA 145 (320)
Q Consensus 71 --~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvD---v~~~~~~~~sg~~~~rViG~G 145 (320)
.+|+.|=+.|.+ |. |. +++.+.+.+++.+.+++-.|||.. .....++++|.- .-+|.+|
T Consensus 104 ~~kptvLIG~S~~~---g~-----Ft------eevv~~Ma~~~~~PIIFaLSNPt~~aE~~peda~~~t~G--~ai~AtG 167 (254)
T cd00762 104 AAKPDFLIGVSRVG---GA-----FT------PEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEG--RAIFASG 167 (254)
T ss_pred HHCCCEEEEECCCC---CC-----CC------HHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHCCC--CEEEEEC
T ss_conf 63998899958998---98-----89------999997763388988997789998677999999975189--7899978
Q ss_pred CCHHHH
Q ss_conf 525689
Q gi|254781048|r 146 GILDSA 151 (320)
Q Consensus 146 t~LDs~ 151 (320)
...+-.
T Consensus 168 spf~pv 173 (254)
T cd00762 168 SPFHPV 173 (254)
T ss_pred CCCCCE
T ss_conf 977881
No 212
>pfam11975 Glyco_hydro_4C Family 4 glycosyl hydrolase C-terminal domain.
Probab=95.60 E-value=0.16 Score=30.01 Aligned_cols=83 Identities=16% Similarity=0.252 Sum_probs=63.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCC-CC-CCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 57654322032323445545288974999999973644-75-63478876999787228884799988999999999999
Q gi|254781048|r 227 RSGSAYYAPASSAIAIAESYLKNKKNLLPCAAHLSGQY-GV-EGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQKSVKA 304 (320)
Q Consensus 227 ~kg~t~~~~a~a~~~ii~aIl~~~~~v~~~s~~~~g~y-g~-~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~~~l~~sa~~ 304 (320)
.+|+..|+. .++++|.+|++..+.+.+.=+|.. ++ .|.++=+||.++++|+..+---+|.+.-...+++....
T Consensus 131 ~~~~~~~~~-----~~i~ai~~~~~~~~~vNV~N~G~I~~Lp~d~vVEVpc~Vd~~Gi~P~~~~~lP~~~~~Li~~~~~~ 205 (231)
T pfam11975 131 DKGSRYYGD-----AAIAAIYNDKEAVFYVNVPNNGAIDNLPDDAVVEVPCLVDRNGIQPIIVGTLPDFVAGLMRTNISV 205 (231)
T ss_pred CCCCCHHHH-----HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 677602699-----999999679963999978899847898998779988897389732153698999999999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999997
Q gi|254781048|r 305 TVDLCNSCTK 314 (320)
Q Consensus 305 i~~~~~~~~~ 314 (320)
-+-.++++.+
T Consensus 206 e~LtveAa~~ 215 (231)
T pfam11975 206 EELAAEAALT 215 (231)
T ss_pred HHHHHHHHHH
T ss_conf 9999999996
No 213
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.59 E-value=0.1 Score=31.17 Aligned_cols=124 Identities=16% Similarity=0.199 Sum_probs=67.1
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCE-EEECCCHHHHCCCCEEEEECC
Q ss_conf 9872899889813689999999579986999965788128988307620544688756-852697488378978999556
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQ-LCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~-v~~~~d~~~l~~aDivVitag 80 (320)
|-+||.|+|.|.-|.+++..+...+ .++..+|.++...... .+ .... +......+.+.++|+||.+.|
T Consensus 11 ~Gk~V~V~GlG~sG~a~a~~L~~~G-~~v~~~D~~~~~~~~~---~~-------~~~~~~~~~~~~~~~~~~d~vV~SPG 79 (487)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFG-ARPTVCDDDPDALRPH---AE-------RGVATVSSSDAVQQIADYALVVTSPG 79 (487)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCHHHHHH---HH-------CCCCEECCCCCHHHHCCCCEEEECCC
T ss_conf 9898999915683899999999786-9799998982577999---86-------59948637622656467788998995
Q ss_pred CCCCCCCCHHHH-HHHHHHHHHHH--HHHHHH---CCCCCCEEEE--CCCCHH---HHHHHHHHCCCCH
Q ss_conf 666765574678-99889999999--976541---2667408871--484207---8999988449986
Q gi|254781048|r 81 IPRKPSMSRDDL-LADNLKAIEKV--GAGIRK---YAPNSFVICI--TNPLDA---MVWALQKFSGLPS 138 (320)
Q Consensus 81 ~~~~~g~~R~dl-l~~N~~i~~~i--~~~i~~---~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~~ 138 (320)
+|... .-... .+.+.+|+.++ +.++.+ ++|...+|-| ||==-+ |...+.+..|++.
T Consensus 80 I~~~~--p~l~~a~~~gi~i~~eieL~~~~~~~~~~~~~~~~IaVTGTnGKTTttsli~~iL~~~g~~~ 146 (487)
T PRK03369 80 FPPTA--PVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLRAAGRRS 146 (487)
T ss_pred CCCCC--HHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 79989--99999998899076599999998744433676655999798872789999999998589985
No 214
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.53 E-value=0.12 Score=30.81 Aligned_cols=136 Identities=18% Similarity=0.191 Sum_probs=67.8
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECC-CHHHHCCCCEEEEEC
Q ss_conf 9987289988981368999999957998699996578812898830762054468875685269-748837897899955
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTS-DYSDIAEADVCIVTA 79 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~-d~~~l~~aDivVita 79 (320)
.|.+||.|+|.|.-|.+++-.+..++ .++..+|.++.... ..++.... + ...+.... +-....++|+||++.
T Consensus 3 ~~~k~v~viGlG~sG~s~a~~L~~~G-~~v~~~D~~~~~~~--~~~~~~~~---~-~i~~~~g~~~~~~~~~~d~vV~SP 75 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNG-AEVAAYDAELKAER--VAQIGKMF---D-GLVFYTGRLKDALDNGFDILALSP 75 (445)
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHCC-CEEEEEECCCCCCH--HHHHHHCC---C-CCEEEECCCHHHHCCCCCEEEECC
T ss_conf 79998999998999999999999789-91999979999531--89997436---9-968993786365015999999899
Q ss_pred CCCCCCCCCHHHHH-HHHHHHHHHHH--HHHHHCCCCCCEEEE--CCCCHH---HHHHHHHHCCCCHHHHHH-HCCC
Q ss_conf 66667655746789-98899999999--765412667408871--484207---899998844998656110-0052
Q gi|254781048|r 80 GIPRKPSMSRDDLL-ADNLKAIEKVG--AGIRKYAPNSFVICI--TNPLDA---MVWALQKFSGLPSHMVVG-MAGI 147 (320)
Q Consensus 80 g~~~~~g~~R~dll-~~N~~i~~~i~--~~i~~~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~~~rViG-~Gt~ 147 (320)
|.|... .-...+ +.+.+|+.++- .++... ....+|-| ||==-+ |...+.+..|++. .+.| .|+-
T Consensus 76 gI~~~~--p~l~~a~~~gi~i~~~~el~~~~~~~-~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~-~~~GNiG~p 148 (445)
T PRK04308 76 GISERQ--PDIEAFKQNGGRVLGDIELLADIVNR-RGDKVIAITGSNGKTTVTSLVGYLCIKCGLDT-VIAGNIGTP 148 (445)
T ss_pred CCCCCC--HHHHHHHHCCCCEECHHHHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCE-EEEEECCCC
T ss_conf 538999--99999997599571599999999841-69957999489983779999999999759962-998503752
No 215
>PRK07041 short chain dehydrogenase; Provisional
Probab=95.52 E-value=0.2 Score=29.28 Aligned_cols=117 Identities=14% Similarity=0.200 Sum_probs=68.0
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCC----HHHHCCCCEEE
Q ss_conf 9872899889-813689999999579986999965788128988307620544688756852697----48837897899
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSD----YSDIAEADVCI 76 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d----~~~l~~aDivV 76 (320)
+.+++-|.|+ +.+|..+|..++..+. ++++.|+++++++..+.++.+..........+....+ +++....|++|
T Consensus 6 ~gK~~lITGgs~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~~d~lv 84 (240)
T PRK07041 6 NDQKVLVVGGSSGIGLAAARAFAARGA-DVTIASRSRERLAAAARALGGPRPVRTAALDITDEAAVDAFFAEAGPFDHVV 84 (240)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 999899957788899999999998799-9999959889999999984788866999847999999999999709878899
Q ss_pred EECCCCCCCCC---C---HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 95566667655---7---46789988999999997654126674088714
Q gi|254781048|r 77 VTAGIPRKPSM---S---RDDLLADNLKAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 77 itag~~~~~g~---~---R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
..||....... + -...+..|..-...+.+.. +..+.|.++.++
T Consensus 85 ~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~-~~~~~G~Ii~is 133 (240)
T PRK07041 85 ITAADTAGGPVRALPLAAAQAAMDSKFWGAYRVARAA-RIAPGGSLTFVS 133 (240)
T ss_pred ECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHH-HHHCCCEEEEEC
T ss_conf 8234479998102999999999998889999999999-971696799964
No 216
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC; InterPro: IPR014308 Members of this protein are the accessory protein XdhC, found in baceria, that is responsible for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products..
Probab=95.48 E-value=0.067 Score=32.43 Aligned_cols=122 Identities=19% Similarity=0.222 Sum_probs=73.1
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECC---CHHHHCCCCEEEEEC
Q ss_conf 87289988981368999999957998699996578812898830762054468875685269---748837897899955
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTS---DYSDIAEADVCIVTA 79 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~---d~~~l~~aDivVita 79 (320)
...|.|-||||||.+++-.|..-+-..+.++|-.++... -.|+.- ...-+.....+. .+++
T Consensus 115 ~~~v~lFGAGHVG~ALv~~La~lP~~~~~WvD~Re~~F~--P~~~p~---~~~~gV~~~~~~H~P~Pe~----------- 178 (270)
T TIGR02964 115 APHVVLFGAGHVGRALVRALAPLPECRVTWVDSREEEFY--PEDIPL---ALIDGVAPLATDHSPEPEA----------- 178 (270)
T ss_pred CCEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCHHHCC--CCCCCC---CCCCCCCEECCCCCCCHHH-----------
T ss_conf 581799867718889999861699579998637155548--743220---2547752301688888799-----------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE--CCCCH-HHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHH
Q ss_conf 6666765574678998899999999765412667408871--48420-78999988449986561100052568999999
Q gi|254781048|r 80 GIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICI--TNPLD-AMVWALQKFSGLPSHMVVGMAGILDSARFRYF 156 (320)
Q Consensus 80 g~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivv--tNPvD-v~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ 156 (320)
.+.+..|++-+||. +..-| .+|..+.+-..|-.==.|||-|= =+||++-
T Consensus 179 --------------------------~v~~aP~~s~~lvlTHdHaLD~~L~~~iL~R~DfAY~GlIGS~TK--r~rF~~R 230 (270)
T TIGR02964 179 --------------------------EVAEAPPGSYFLVLTHDHALDLELCEAILARGDFAYFGLIGSKTK--RARFEHR 230 (270)
T ss_pred --------------------------HHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECHHHHHH--HHHHHHH
T ss_conf --------------------------998379996599960585899999999962599068802010768--9999999
Q ss_pred HHHHCCCCCCCCE
Q ss_conf 9997198733550
Q gi|254781048|r 157 LAQEFGVSVESVT 169 (320)
Q Consensus 157 ia~~l~v~~~~V~ 169 (320)
|++. |.+++-+.
T Consensus 231 L~~~-G~~~~~~~ 242 (270)
T TIGR02964 231 LRAR-GVDPAQIA 242 (270)
T ss_pred HHHC-CCCHHHHH
T ss_conf 9856-89878995
No 217
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=95.46 E-value=0.076 Score=32.07 Aligned_cols=110 Identities=18% Similarity=0.251 Sum_probs=62.5
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCE-EEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH---HHHCCCCEEE
Q ss_conf 99872899889813689999999579986-9999657881289883076205446887568526974---8837897899
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGD-VVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY---SDIAEADVCI 76 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~e-i~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~---~~l~~aDivV 76 (320)
|++.|++|||.|++|.-+.+-+...+.-| ..++.++++ .+|.+.--+ ++..+...+..-+ .+..+.|+|+
T Consensus 2 ~~k~~vAIiGsGnIGtDLm~Ki~Rs~~le~~~~vG~dp~-S~GL~rA~~-----lGv~ts~~GId~ll~~~~~~~idiVF 75 (298)
T PRK08300 2 MSKIKVAIIGSGNIGTDLMIKILRSPHLEPVAMVGIDPE-SDGLARARR-----LGVATTAEGIDGLLAHPEFDDIDIVF 75 (298)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEEEECCCC-CHHHHHHHH-----CCCCCCCCCHHHHHHCCCCCCCCEEE
T ss_conf 875349998888338999999865776106999805989-849999998-----49966376799996183356878899
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHH
Q ss_conf 9556666765574678998899999999765412667408871484207
Q gi|254781048|r 77 VTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDA 125 (320)
Q Consensus 77 itag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv 125 (320)
=+-++ .--..|.+.+++.+..+....|.++==.+-.|+|.
T Consensus 76 DATSA---------~aH~~h~~~l~~~g~~~IDLTPAaiGp~~VP~VNl 115 (298)
T PRK08300 76 DATSA---------GAHVENAAKLRELGVRVIDLTPAAIGPYCVPAVNL 115 (298)
T ss_pred ECCCH---------HHHHHHHHHHHHCCCEEEECCCCCCCCEEECCCCH
T ss_conf 78980---------66899999999739879967700269878763778
No 218
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.43 E-value=0.15 Score=30.14 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=16.8
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 28998898136899999995799869999657881
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGM 39 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~ 39 (320)
+|.|+|+|.+|...+.++...+..+++..|+++.+
T Consensus 172 ~VlV~G~G~iGl~~~~~ak~~Ga~~Vi~~d~~~~r 206 (343)
T PRK09880 172 RVFISGVGPIGCLIVSAVKTLGAAEIVCADLSPRS 206 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHH
T ss_conf 89998477679999999998699879999797899
No 219
>KOG1205 consensus
Probab=95.43 E-value=0.24 Score=28.86 Aligned_cols=146 Identities=15% Similarity=0.196 Sum_probs=88.1
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEE--CCCH-----------H
Q ss_conf 9872899889-813689999999579986999965788128988307620544688756852--6974-----------8
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCG--TSDY-----------S 67 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~--~~d~-----------~ 67 (320)
+++.|.|.|| ..+|.++||-++..+.. ++|.-+...+++-.+.++....+.. ...+.. ..|. .
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~~-l~lvar~~rrl~~v~~~l~~~~~~~--~v~~~~~Dvs~~~~~~~~~~~~~~ 87 (282)
T KOG1205 11 AGKVVLITGASSGIGEALAYELAKRGAK-LVLVARRARRLERVAEELRKLGSLE--KVLVLQLDVSDEESVKKFVEWAIR 87 (282)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEEHHHHHHHHHHHHHHHHCCCC--CCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 8988999578717889999999867773-4774243202899999999747867--647996765887889999999998
Q ss_pred HHCCCCEEEEECCCCCCCCC-C------HHHHHHHH----HHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCC
Q ss_conf 83789789995566667655-7------46789988----9999999976541266740887148420789999884499
Q gi|254781048|r 68 DIAEADVCIVTAGIPRKPSM-S------RDDLLADN----LKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGL 136 (320)
Q Consensus 68 ~l~~aDivVitag~~~~~g~-~------R~dll~~N----~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~ 136 (320)
.+.+.|+.|..||..+ .+. + ...+++.| +.+-+...+.+++.+ +|.+++++...--+++-+.- -|
T Consensus 88 ~fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~~~P~~~--~Y 163 (282)
T KOG1205 88 HFGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKMPLPFRS--IY 163 (282)
T ss_pred HCCCCCEEEECCCCCC-CCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCC--CC
T ss_conf 6588888984686565-55334476898887710004024899999988766328-97499980610155788655--41
Q ss_pred CHHHHHHHCCCHHHHHHHH
Q ss_conf 8656110005256899999
Q gi|254781048|r 137 PSHMVVGMAGILDSARFRY 155 (320)
Q Consensus 137 ~~~rViG~Gt~LDs~R~~~ 155 (320)
++.| +-+....||.|...
T Consensus 164 ~ASK-~Al~~f~etLR~El 181 (282)
T KOG1205 164 SASK-HALEGFFETLRQEL 181 (282)
T ss_pred CHHH-HHHHHHHHHHHHHH
T ss_conf 5679-99999999999996
No 220
>PRK05599 hypothetical protein; Provisional
Probab=95.42 E-value=0.19 Score=29.50 Aligned_cols=113 Identities=18% Similarity=0.256 Sum_probs=66.8
Q ss_pred EEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHH-----------HCCC
Q ss_conf 2899889-813689999999579986999965788128988307620544688756852697488-----------3789
Q gi|254781048|r 5 KIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSD-----------IAEA 72 (320)
Q Consensus 5 KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~-----------l~~a 72 (320)
+|-|+|| ..+|.++|..++. + .+++|..+++++++..+.+++..-.. .......-.+|++. .-+-
T Consensus 2 tvlITGASsGIG~a~A~~lA~-G-~~vvl~~R~~e~l~~l~~~l~~~g~~-~v~~~~~Dvtd~~~~~~~v~~~~~~~g~i 78 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLAH-G-EDVVLAARRPEAAGGLAEDLRQLGAT-SVHVLSFDATDLDSHRELVKQTQELAGEI 78 (246)
T ss_pred EEEEECCCHHHHHHHHHHHHC-C-CCEEEEECCHHHHHHHHHHHHHHCCC-EEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 899988868999999999985-9-94999999999999999999862597-18997289999999999999999861984
Q ss_pred CEEEEECCCCCCCC---CCHHH---HHHHH----HHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 78999556666765---57467---89988----999999997654126674088714
Q gi|254781048|r 73 DVCIVTAGIPRKPS---MSRDD---LLADN----LKAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 73 DivVitag~~~~~g---~~R~d---ll~~N----~~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
|++|..||...... .+..+ .+..| ......+.+.+.+....|.++++|
T Consensus 79 d~lv~naGi~~~~~~~~~d~~~~~~~~~vN~~~~~~~~~~~~~~~~~~~~~G~Iv~iS 136 (246)
T PRK05599 79 SLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTTPSTIVAFS 136 (246)
T ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 3999877667873201189999999999886999999999999998546994799996
No 221
>PRK12861 malic enzyme; Reviewed
Probab=95.41 E-value=0.023 Score=35.42 Aligned_cols=110 Identities=17% Similarity=0.208 Sum_probs=61.9
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCC--CEEEEEECCCCCHHHHHHHH-HHHCCCCCCCCEEEECCC-HHHHCCCCEEEE
Q ss_conf 98728998898136899999995799--86999965788128988307-620544688756852697-488378978999
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKL--GDVVLLDIVDGMPRGKALDI-AESSPVEGFGAQLCGTSD-YSDIAEADVCIV 77 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l--~ei~L~D~~~~~~~g~~~Dl-~~~~~~~~~~~~v~~~~d-~~~l~~aDivVi 77 (320)
..-||.+.|||.-|-+|+.++..-++ .+++++|..--.-+|.. |+ +..-..+...+. ... -++++|||+.+
T Consensus 186 ~~~kiv~~GaGaa~ia~~~l~~~~G~~~~ni~~~D~~G~i~~~r~-~~~~~~k~~~a~~t~---~~~l~ea~~gaDvfi- 260 (762)
T PRK12861 186 KEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRT-TLMDPAKERFAQETD---ARTLAEVIGGADVFL- 260 (762)
T ss_pred HHEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC-CCCHHHHHHHHHCCC---CCCHHHHHCCCCEEE-
T ss_conf 561699968778899999999983999555899947785118986-535799999985689---777999837898899-
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCH-HHHHHHHHH
Q ss_conf 55666676557467899889999999976541266740887148420-789999884
Q gi|254781048|r 78 TAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLD-AMVWALQKF 133 (320)
Q Consensus 78 tag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvD-v~~~~~~~~ 133 (320)
|.. .+|.-.. +.++.-+++.++.-.+||.- ++-..+.+.
T Consensus 261 --G~S-~~~~~~~--------------~mv~~Ma~~pivfalANP~PEI~p~~a~~~ 300 (762)
T PRK12861 261 --GLS-AGGVLKA--------------EMLKAMAARPLILALANPTPEIFPELAHAT 300 (762)
T ss_pred --ECC-CCCCCCH--------------HHHHHHCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf --767-8998999--------------999853778769972699988898998541
No 222
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=95.40 E-value=0.082 Score=31.86 Aligned_cols=105 Identities=21% Similarity=0.314 Sum_probs=57.6
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCC--EEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEE---------------EC---
Q ss_conf 7289988981368999999957998--699996578812898830762054468875685---------------26---
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLG--DVVLLDIVDGMPRGKALDIAESSPVEGFGAQLC---------------GT--- 63 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~--ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~---------------~~--- 63 (320)
.||.|||.|..|......+...++. |++.++.+. ++++...+....-...+.+ ..
T Consensus 1 ~kIkViGVGG~G~N~vn~m~~~~~~~v~~iaiNTD~-----q~L~~~~~~~ki~iG~~~t~GlGaGg~Pe~G~~AA~e~~ 75 (304)
T cd02201 1 AKIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDA-----QALAKSKAPNKIQLGKELTRGLGAGGDPEVGRKAAEESR 75 (304)
T ss_pred CCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCH-----HHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 946999878812999999998399985599990879-----998459998279708765688988888479999999889
Q ss_pred CC-HHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCH
Q ss_conf 97-48837897899955666676557467899889999999976541266740887148420
Q gi|254781048|r 64 SD-YSDIAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLD 124 (320)
Q Consensus 64 ~d-~~~l~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvD 124 (320)
.. .+.+.|+|+|+|+||.--..| . .=++++.++++.... =.+-+||-|-.
T Consensus 76 ~~I~~~l~~~d~vfi~AGmGGGTG---T----GaaPviA~~Ake~g~----LtvavVT~PF~ 126 (304)
T cd02201 76 EEIKEALEGADMVFITAGMGGGTG---T----GAAPVIAKIAKEMGA----LTVAVVTKPFS 126 (304)
T ss_pred HHHHHHHCCCCEEEEEECCCCCCC---C----CHHHHHHHHHHHCCC----EEEEEEECCHH
T ss_conf 999999736876999942579866---3----178999998866798----59999967857
No 223
>PRK13018 cell division protein FtsZ; Provisional
Probab=95.40 E-value=0.23 Score=28.99 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=44.9
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEE---------------CCC--
Q ss_conf 872899889813689999999579986999965788128988307620544688756852---------------697--
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCG---------------TSD-- 65 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~---------------~~d-- 65 (320)
..||.|||.|.-|....+.+...++..+-++-+|.+ .++++...+....-...+++. ..+
T Consensus 27 ~~kIkViGvGG~G~Navn~M~~~gi~gVefia~NTD---~Q~L~~s~a~~ki~lG~~~T~GLGAG~~PeiG~~AAees~~ 103 (387)
T PRK13018 27 GPKIKVVGVGGAGNNTVNRLYDIGIEGAETIAINTD---AQHLAMIKADKKILIGKTLTRGLGAGGDPEVGRKAAEESRD 103 (387)
T ss_pred CCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCH---HHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 986899976886399999999839998349998165---99983699982798577657889998883899999998299
Q ss_pred --HHHHCCCCEEEEECCCCC
Q ss_conf --488378978999556666
Q gi|254781048|r 66 --YSDIAEADVCIVTAGIPR 83 (320)
Q Consensus 66 --~~~l~~aDivVitag~~~ 83 (320)
.+.++++|+|+||||.--
T Consensus 104 ~I~~~l~g~DmVFItAGmGG 123 (387)
T PRK13018 104 EIKEVLKGADLVFVTAGMGG 123 (387)
T ss_pred HHHHHHCCCCEEEEEECCCC
T ss_conf 99999758986999953478
No 224
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.39 E-value=0.17 Score=29.80 Aligned_cols=116 Identities=21% Similarity=0.289 Sum_probs=67.2
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCC--EEEEEECCC-------CCHHHHHHHHHHHCCCCCCCCEEEECCC-HHHHCC
Q ss_conf 987289988981368999999957998--699996578-------8128988307620544688756852697-488378
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLG--DVVLLDIVD-------GMPRGKALDIAESSPVEGFGAQLCGTSD-YSDIAE 71 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~--ei~L~D~~~-------~~~~g~~~Dl~~~~~~~~~~~~v~~~~d-~~~l~~ 71 (320)
+.-||.+.|+|.-|..++.++..-++. ++.|+|..- +....+..++.+. ...... ..+ .+.+++
T Consensus 24 ~d~riv~~GAGsAg~gia~ll~~~g~~~~~i~lvD~~GLl~~~r~d~~~~~k~~~a~~-----~~~~~~-~~~l~e~v~~ 97 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKE-----TNPEKT-GGTLKEALKG 97 (226)
T ss_pred CCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH-----HCCCCC-CCCHHHHHCC
T ss_conf 0307999876899999999999827760267999367852478864144999999987-----233566-6879998377
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC-HHHHHHHHHHCCCCHHHHHHHC
Q ss_conf 9789995566667655746789988999999997654126674088714842-0789999884499865611000
Q gi|254781048|r 72 ADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPL-DAMVWALQKFSGLPSHMVVGMA 145 (320)
Q Consensus 72 aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPv-Dv~~~~~~~~sg~~~~rViG~G 145 (320)
+|++|=+.+ +|. + +-+++++. +++.++.-.|||. ......+++. | .-+|.+|
T Consensus 98 ~~vLIG~S~----~g~-----F--t~evv~~M-------~~~PiIFaLSNPt~E~tpe~a~~~-G---~ai~AtG 150 (226)
T cd05311 98 ADVFIGVSR----PGV-----V--KKEMIKKM-------AKDPIVFALANPVPEIWPEEAKEA-G---ADIVATG 150 (226)
T ss_pred CCEEEECCC----CCC-----C--CHHHHHHH-------CCCCEEEECCCCCCCCCHHHHHHH-C---CCEEECC
T ss_conf 757997268----997-----7--99999974-------779889878899764899999872-7---7089549
No 225
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.38 E-value=0.11 Score=31.14 Aligned_cols=71 Identities=23% Similarity=0.379 Sum_probs=43.7
Q ss_pred CCEEEEECC-CCHHHHHHHHHHHCCC--CEEEEEECCCCCHHHHH-HHHHHHCCCCCCCCEEEE-CCCHHHHCCCCEEEE
Q ss_conf 872899889-8136899999995799--86999965788128988-307620544688756852-697488378978999
Q gi|254781048|r 3 SNKIALIGS-GMIGGTLAHLAVLKKL--GDVVLLDIVDGMPRGKA-LDIAESSPVEGFGAQLCG-TSDYSDIAEADVCIV 77 (320)
Q Consensus 3 ~~KV~IIGa-G~VG~~~a~~~~~~~l--~ei~L~D~~~~~~~g~~-~Dl~~~~~~~~~~~~v~~-~~d~~~l~~aDivVi 77 (320)
+.||+|+|| |.||+.+..+|..... .++.++-... -.|+. .++..-. ..+-. ..|..+.+++||+++
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~r--SaG~~~~~f~~~~------~~v~~~~~~~~~~~~~Divf~ 72 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASAR--SAGKKYIEFGGKS------IGVPEDAADEFVFSDVDIVFF 72 (334)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCC--CCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCEEEE
T ss_conf 91899994235589999999875399840578885231--1577160106750------357621134100124999999
Q ss_pred ECCC
Q ss_conf 5566
Q gi|254781048|r 78 TAGI 81 (320)
Q Consensus 78 tag~ 81 (320)
++|.
T Consensus 73 ~ag~ 76 (334)
T COG0136 73 AAGG 76 (334)
T ss_pred ECCH
T ss_conf 1766
No 226
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=95.37 E-value=0.056 Score=32.94 Aligned_cols=63 Identities=21% Similarity=0.241 Sum_probs=43.6
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHH-HHCCCCEEEEEC
Q ss_conf 7289988981368999999957998699996578812898830762054468875685269748-837897899955
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYS-DIAEADVCIVTA 79 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~-~l~~aDivVita 79 (320)
=||++||.|+.|+.+|..++..+. ++..+|+++++++..+ . ..... ..++. ..++||+|+.+.
T Consensus 2 MkIgfIGlG~MG~~ma~~L~~~G~-~v~v~dr~~~~~~~l~----~------~Ga~~--~~s~~e~~~~~dvvi~~l 65 (295)
T PRK11559 2 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNPEAIADVI----A------AGAET--ASTAKAIAEQCDVIITML 65 (295)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH----H------CCCCC--CCCHHHHHHCCCEEEEEC
T ss_conf 789998405769999999997899-5899929999999999----8------59920--399999984388789966
No 227
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=95.33 E-value=0.077 Score=32.04 Aligned_cols=160 Identities=14% Similarity=0.134 Sum_probs=74.3
Q ss_pred EEEEC-CCCHHHHHHHHHHHCCCCEEEEEECCCCCHHH---HHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCC
Q ss_conf 89988-98136899999995799869999657881289---883076205446887568526974883789789995566
Q gi|254781048|r 6 IALIG-SGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRG---KALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGI 81 (320)
Q Consensus 6 V~IIG-aG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g---~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~ 81 (320)
|-|.| ||.+|++++..++..+..+++.+|--.+..+. .-+|+.+......+...+.. -++..+.|.|+-.|+.
T Consensus 2 ILVTGgaGFIGS~l~~~L~~~G~~~V~~~Dnl~~~~~~~~l~~~~~~d~~~~~~~~~~~~~---~~~~~~id~V~Hlaa~ 78 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLDIADYMDKEDFLAQIMA---GDDFGDIEAIFHEGAC 78 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCHHCCHHHHHHHHHH---CCCCCCCCEEEECCCC
T ss_conf 9994059799999999999779980999978999731301235631012038999999861---1345787689999866
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHH-------HHCCCC-HHHHHHHCCCHHHHHH
Q ss_conf 66765574678998899999999765412667408871484207899998-------844998-6561100052568999
Q gi|254781048|r 82 PRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQ-------KFSGLP-SHMVVGMAGILDSARF 153 (320)
Q Consensus 82 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~-------~~sg~~-~~rViG~Gt~LDs~R~ 153 (320)
......+....+..|..-...+.+.+.+... .++.+|- ..++- +...++ |.-..|. +=+-.-.+
T Consensus 79 ~~~~~~~~~~~~~~n~~~t~nll~~~~~~~~--~~i~aSS-----s~vYG~~~~~~~~E~~~~~P~s~Yg~-sK~~~E~~ 150 (308)
T PRK11150 79 SSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASS-----AATYGGRTSDFIEEREYEKPLNVYGY-SKFLFDEY 150 (308)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC--CEEEECC-----HHHHCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHH
T ss_conf 6664556511321499999999999997499--8899547-----56408988898656888998687676-09999999
Q ss_pred HHHHHHHCCCCCCCCEE-EEECCC
Q ss_conf 99999971987335505-675078
Q gi|254781048|r 154 RYFLAQEFGVSVESVTA-LVLGSH 176 (320)
Q Consensus 154 ~~~ia~~l~v~~~~V~~-~ViGeH 176 (320)
-...++..+.+...+.- -|.|-+
T Consensus 151 ~~~~~~~~~~~~~~lR~fnvYGP~ 174 (308)
T PRK11150 151 VRQILPEANSQICGFRYFNVYGPR 174 (308)
T ss_pred HHHHHHHCCCCCEEEEEEEEECCC
T ss_conf 999999839982898762378959
No 228
>PRK07201 short chain dehydrogenase; Provisional
Probab=95.32 E-value=0.19 Score=29.51 Aligned_cols=218 Identities=13% Similarity=0.122 Sum_probs=110.7
Q ss_pred EEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCC-CCCCCCEEEECCC--------HHHHCCCC
Q ss_conf 28998-89-81368999999957998699996578812898830762054-4688756852697--------48837897
Q gi|254781048|r 5 KIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSP-VEGFGAQLCGTSD--------YSDIAEAD 73 (320)
Q Consensus 5 KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~-~~~~~~~v~~~~d--------~~~l~~aD 73 (320)
|+++| || ..+|.++|..++..+ +.++|.++++++++..+.+++..-. .......+....+ .+++-.-|
T Consensus 377 KvalITGASSGIG~A~A~~LA~~G-A~Vvl~AR~~e~Le~v~~ei~~~Gg~a~~~~~DVtd~~~v~~lv~~i~~~~G~ID 455 (663)
T PRK07201 377 KHVIITGASSGIGRATAIKVAEAG-ATVFALARDGEKLDELVAEIRARGGQAHAYTCDLTDSASVEHTVKDILGRHGHVD 455 (663)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 479993887599999999999879-9899998999999999999995599189999627999999999999999679988
Q ss_pred EEEEECCCCCC--CCC--CHH----HHHHHH----HHHHHHHHHHHHHCCCCCCEEEECC------CCHHHHHHHHHHCC
Q ss_conf 89995566667--655--746----789988----9999999976541266740887148------42078999988449
Q gi|254781048|r 74 VCIVTAGIPRK--PSM--SRD----DLLADN----LKAIEKVGAGIRKYAPNSFVICITN------PLDAMVWALQKFSG 135 (320)
Q Consensus 74 ivVitag~~~~--~g~--~R~----dll~~N----~~i~~~i~~~i~~~~p~~i~ivvtN------PvDv~~~~~~~~sg 135 (320)
|+|..||.... ... +|. ..++.| ....+.+.+.+.+.. .|-++++|- +-..-+|.+.|.
T Consensus 456 VLVNNAG~si~~~~~~~~d~~~d~er~m~vN~~G~v~l~~a~lP~M~~r~-~G~IVNISSiag~~~~P~~saYsASKa-- 532 (663)
T PRK07201 456 YLVNNAGRSIRRSVVNSTDRFHDYERTMQLNYFGAVRLVLGLLPHMRERR-FGHVVNISSIGVQTNAPRFSAYVASKA-- 532 (663)
T ss_pred EEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CEEEEEECCHHHCCCCCCCHHHHHHHH--
T ss_conf 89989644675750113454999999999974999999999999888539-939999755654778998649999999--
Q ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC-----EEEEECCCCCEEEEECCCCCCC-CCHHHHHHHCCCCCHHHHH
Q ss_conf 986561100052568999999999719873355-----0567507885246510235447-7015543001587876799
Q gi|254781048|r 136 LPSHMVVGMAGILDSARFRYFLAQEFGVSVESV-----TALVLGSHGDSMVPMLRYATVS-GIPVSDLVKLGWTTQEKID 209 (320)
Q Consensus 136 ~~~~rViG~Gt~LDs~R~~~~ia~~l~v~~~~V-----~~~ViGeHGds~vp~~S~~~v~-g~p~~~~~~~~~~~~~~~~ 209 (320)
+.-.+.++.|.. ++. .||....| ..++|+ -++.. ..| ..+.++..
T Consensus 533 -------Al~aftr~La~E--la~-~GVrVttI~PG~V~TpMia-----------pt~~y~~~p--------~l~pe~aA 583 (663)
T PRK07201 533 -------ALDAFARVAASE--TLS-DGITFTNIHMPLVRTPMIA-----------PTKRYNPVP--------TLSPEEAA 583 (663)
T ss_pred -------HHHHHHHHHHHH--HCC-CCEEEEEECCCCCCCCCCC-----------CCCCCCCCC--------CCCHHHHH
T ss_conf -------999999999998--375-7828999715971788778-----------752227899--------89999999
Q ss_pred HH-HHHHHCCHHHHHHHHCCCCCCCCCHHHH-----HHHHHHHHCCCCEEEEEEEEECC
Q ss_conf 99-8455101588887515765432203232-----34455452889749999999736
Q gi|254781048|r 210 QI-VKRTREGGAEIVGLLRSGSAYYAPASSA-----IAIAESYLKNKKNLLPCAAHLSG 262 (320)
Q Consensus 210 ~l-~~~v~~~g~~ii~~~~kg~t~~~~a~a~-----~~ii~aIl~~~~~v~~~s~~~~g 262 (320)
++ .+.+.+..-. =.|..|....+ =++.+.+++-..+++|=|.-.+|
T Consensus 584 ~~i~~a~~~~p~r-------i~t~~g~~~~~~~~~~p~~~~~~~~~~~~~~p~s~a~~~ 635 (663)
T PRK07201 584 DMVARALVEKPAR-------IATPLGTFAEVGHYLAPKLARRIMNQLYRMFPDSAAAQG 635 (663)
T ss_pred HHHHHHHHCCCCC-------CCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHCC
T ss_conf 9999998518860-------467601799998863805899999877640898465548
No 229
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; InterPro: IPR013454 Rhamnose is a methyl-pentose sugar which is found as a constituent of pectin within the cell walls of dicotyledonous plants and has also been found in the mucilage of a number of legume plants . RhaD from Rhizobium leguminosarum bv. trifolii is encoded by a gene occurring in a rhamnose utilisation cluster, and is necessary for growth on this compound . This protein is predicted to be a bifunctional NAD-dependent aldolase/dehydrogenase..
Probab=95.30 E-value=0.13 Score=30.53 Aligned_cols=225 Identities=21% Similarity=0.295 Sum_probs=116.3
Q ss_pred CEEEEE-C-CCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHH--HC-------------CCCCCCCEEEECCC-
Q ss_conf 728998-8-981368999999957998699996578812898830762--05-------------44688756852697-
Q gi|254781048|r 4 NKIALI-G-SGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAE--SS-------------PVEGFGAQLCGTSD- 65 (320)
Q Consensus 4 ~KV~II-G-aG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~--~~-------------~~~~~~~~v~~~~d- 65 (320)
+||+.| | +|.+|..+|..++..+- .++|.|+|.+.++..+.||.+ .+ +..+....|+....
T Consensus 424 ~~Va~VtGGasGIG~~~A~rL~~eGA-hvV~aD~d~~~a~~va~~~~~~fG~d~a~AGsdisaCGPaiGl~~DvT~e~~v 502 (709)
T TIGR02632 424 RRVAFVTGGASGIGRETARRLVDEGA-HVVLADLDAEAAEAVAAEIVDKFGADKAVAGSDISACGPAIGLKLDVTDEEAV 502 (709)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCC-EEEEECCCHHHHHHHHHHHHHHCCCCCEECCCCHHCCCCCEEEEEEECCHHHH
T ss_conf 70688973886526899999973697-79996236578999999986313888121143200046710027631758999
Q ss_pred ---HHH----HCCCCEEEEECCCCCC-CCC--CHHHHHHHHHHHH--------HHHHHHHHHCC-CCCCEEEEC-CCC--
Q ss_conf ---488----3789789995566667-655--7467899889999--------99997654126-674088714-842--
Q gi|254781048|r 66 ---YSD----IAEADVCIVTAGIPRK-PSM--SRDDLLADNLKAI--------EKVGAGIRKYA-PNSFVICIT-NPL-- 123 (320)
Q Consensus 66 ---~~~----l~~aDivVitag~~~~-~g~--~R~dll~~N~~i~--------~~i~~~i~~~~-p~~i~ivvt-NPv-- 123 (320)
+++ .=+.|+||.+||.... |-+ +|+..=+-|..|. ++-...+++.+ +--+|.+.| |-|
T Consensus 503 ~~~f~~v~~~yGGvD~vv~nAGi~~S~p~~~t~r~~~W~l~~di~atG~FLVareA~r~~~~Q~lGG~~VfiaSkNav~A 582 (709)
T TIGR02632 503 KAAFAEVALAYGGVDIVVNNAGIAVSSPLEETERLEEWDLNLDILATGYFLVAREAARLMRKQGLGGNIVFIASKNAVVA 582 (709)
T ss_pred HHHHHHHHHHHCCEEEEEECCCHHCCCCCHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCEEEEEE
T ss_conf 99999999974984787652530105770232215543201201012003588899999973179855677611000111
Q ss_pred --HHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHC---CCCCCCCE-EEEECCCCCEEEEE-CC--CCCCCCCHH
Q ss_conf --07899998844998656110005256899999999971---98733550-56750788524651-02--354477015
Q gi|254781048|r 124 --DAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQEF---GVSVESVT-ALVLGSHGDSMVPM-LR--YATVSGIPV 194 (320)
Q Consensus 124 --Dv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~l---~v~~~~V~-~~ViGeHGds~vp~-~S--~~~v~g~p~ 194 (320)
|.++|-+.|.. .+-+-+.||-.+ ||-.+-|. .-|+= |..+++- |. ++...|+|+
T Consensus 583 ~kn~~AY~aaKA~---------------~~Hl~R~LA~Ela~~GiRVNtV~PdaVl~--GS~if~~~W~~~raA~ygi~f 645 (709)
T TIGR02632 583 GKNASAYSAAKAA---------------EAHLARCLAAELAELGIRVNTVNPDAVLR--GSGIFDGEWREERAAAYGIPF 645 (709)
T ss_pred CCCCCHHHHHHHH---------------HHHHHHHHHHHCCCCCEEEECCCCCHHCC--CCCCCCHHHHHHHHHHHCCCC
T ss_conf 7884055589999---------------99899999981478864640106500110--552153367888887707743
Q ss_pred HHHHHCCCCCHH-HHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC-CCCEEEEE
Q ss_conf 543001587876-799998455101588887515765432203232344554528-89749999
Q gi|254781048|r 195 SDLVKLGWTTQE-KIDQIVKRTREGGAEIVGLLRSGSAYYAPASSAIAIAESYLK-NKKNLLPC 256 (320)
Q Consensus 195 ~~~~~~~~~~~~-~~~~l~~~v~~~g~~ii~~~~kg~t~~~~a~a~~~ii~aIl~-~~~~v~~~ 256 (320)
+.-- ..+ -.|+|.+--+++.. ++..-+.--+|.|++-+...-+. -+..+++|
T Consensus 646 tade-----Ptdvl~d~L~~fY~~Rsl-----Lk~~v~p~d~AeAvf~L~S~~~~~tTG~~i~V 699 (709)
T TIGR02632 646 TADE-----PTDVLADKLEEFYAKRSL-----LKREVLPADIAEAVFFLASDKLEKTTGLIITV 699 (709)
T ss_pred CCCC-----CHHHHHHHHHHHHHHHHH-----CCCCCCCHHHHHHHHHHHCCCCCCCCCCEECC
T ss_conf 4687-----235788889889875432-----37766808899999997345101027866403
No 230
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=95.29 E-value=0.21 Score=29.26 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=13.5
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCC-CEEEEEECC
Q ss_conf 728998898136899999995799-869999657
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKL-GDVVLLDIV 36 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l-~ei~L~D~~ 36 (320)
+.|+|||.|++|+.+|..+. +. .++..+|..
T Consensus 147 ktvGIiG~G~IG~~va~~~~--~fg~~Vi~yD~~ 178 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYA--GFGATITAYDAY 178 (330)
T ss_pred CEEEEECCCHHHHHHHHHHH--HCCCEEEEECCC
T ss_conf 68999675889999999987--569989998998
No 231
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=95.29 E-value=0.13 Score=30.65 Aligned_cols=96 Identities=22% Similarity=0.222 Sum_probs=62.1
Q ss_pred CCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH--------HHHCCCC
Q ss_conf 872899889-8136899999995799869999657881289883076205446887568526974--------8837897
Q gi|254781048|r 3 SNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY--------SDIAEAD 73 (320)
Q Consensus 3 ~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~--------~~l~~aD 73 (320)
+.||-|+|+ |.+|+++...++...=-|++=+|+..+..... ..+..-.+..+|. ...+.||
T Consensus 315 ~~~vlilgvngfig~hl~~~~l~~~~~~v~g~d~~~~~i~~~----------~~~p~~~f~~gdi~~~~~wie~~ikkcd 384 (660)
T PRK08125 315 RTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRF----------LGHPRFHFVEGDISIHSEWIEYHIKKCD 384 (660)
T ss_pred CEEEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHH----------HCCCCEEEEECCCHHHHHHHHHHHHHCC
T ss_conf 227999834413678999998503885899886575345575----------3499548881561466899998875457
Q ss_pred EEEEECCCCCCCCC-CHH------HHHHHHHHHHHHHHHHHHH
Q ss_conf 89995566667655-746------7899889999999976541
Q gi|254781048|r 74 VCIVTAGIPRKPSM-SRD------DLLADNLKAIEKVGAGIRK 109 (320)
Q Consensus 74 ivVitag~~~~~g~-~R~------dll~~N~~i~~~i~~~i~~ 109 (320)
+|+=-++.. +|-+ +|. -=+++|.+|++.+++.=++
T Consensus 385 vvlplvaia-tp~~y~~~pl~vfeldfe~nl~ivr~c~ky~kr 426 (660)
T PRK08125 385 VVLPLVAIA-TPIEYTRNPLRVFELDFEENLKIIRYCVKYRKR 426 (660)
T ss_pred EEEEEHHHC-CHHHHHCCCCEEEEECHHHCCHHHHHHHHHCCE
T ss_conf 673205534-747763486047873267552899999974877
No 232
>PRK05876 short chain dehydrogenase; Provisional
Probab=95.28 E-value=0.26 Score=28.56 Aligned_cols=114 Identities=17% Similarity=0.180 Sum_probs=69.1
Q ss_pred CEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHH-----------HHC
Q ss_conf 728998-89-81368999999957998699996578812898830762054468875685269748-----------837
Q gi|254781048|r 4 NKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYS-----------DIA 70 (320)
Q Consensus 4 ~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~-----------~l~ 70 (320)
.|+++| |+ +.+|..+|..++..+. .+++.|++++.++..+..+...- . ......+-.++.+ .+-
T Consensus 6 gKvavITGaasGIG~a~A~~la~~Ga-~Vvi~d~~~~~l~~~~~~l~~~g-~-~~~~~~~Dvt~~~~v~~l~~~~~~~~G 82 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEG-F-DVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCC-C-CEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 98799928266999999999998799-89999798899999999998269-8-479997888999999999999999848
Q ss_pred CCCEEEEECCCCCCCC--CCHHH----HHHHH----HHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 8978999556666765--57467----89988----999999997654126674088714
Q gi|254781048|r 71 EADVCIVTAGIPRKPS--MSRDD----LLADN----LKAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 71 ~aDivVitag~~~~~g--~~R~d----ll~~N----~~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
..|++|..||...... +...+ .+..| ....+.+.+.+.+.+..|.+++++
T Consensus 83 ~iDilvnNAGi~~~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~lP~m~~~g~~G~Ivnts 142 (275)
T PRK05876 83 HVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTA 142 (275)
T ss_pred CCCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 988512157446898723299999999876413899999999999999819994999968
No 233
>PRK06346 consensus
Probab=95.26 E-value=0.27 Score=28.52 Aligned_cols=117 Identities=17% Similarity=0.233 Sum_probs=70.8
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHC-CCCCCCCEEEECCC--------HHHHCC
Q ss_conf 9872899889-8136899999995799869999657881289883076205-44688756852697--------488378
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESS-PVEGFGAQLCGTSD--------YSDIAE 71 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~~v~~~~d--------~~~l~~ 71 (320)
|.+.+.|.|+ +.+|..+|..++..+ +++++.|+++++++..+.++...- ....+...+....+ .+.+..
T Consensus 4 ~gKv~lITGgs~GIG~a~a~~la~~G-a~V~i~~r~~e~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~i~~~~~~fg~ 82 (251)
T PRK06346 4 KGKVAIVTGAASGMGKSIAELFAKEG-AKVVVADLNLERAQKVVEEITSNGGTAIAVVANVTKQEDIENMVDTAVDTYGT 82 (251)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99889994757889999999999879-98999979899999999999963990899977889899999999999998299
Q ss_pred CCEEEEECCCCCC--C--CCCHH---HHHHHHHHH----HHHHHHHHHHCCCCCCEEEEC
Q ss_conf 9789995566667--6--55746---789988999----999997654126674088714
Q gi|254781048|r 72 ADVCIVTAGIPRK--P--SMSRD---DLLADNLKA----IEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 72 aDivVitag~~~~--~--g~~R~---dll~~N~~i----~~~i~~~i~~~~p~~i~ivvt 120 (320)
-|++|..||...+ | .++.. ..+..|..- .+...+.+.+.. .|.+|.++
T Consensus 83 iDiLVnNAgi~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IInis 141 (251)
T PRK06346 83 LDILVNNAGIMDNFVPVGELTDELWDKVFAVNTTGVMRATRKALPIFEEKG-SGVIVNIA 141 (251)
T ss_pred CCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEE
T ss_conf 979998998899998711289999999999970999999999999999859-95499994
No 234
>PRK06487 glycerate dehydrogenase; Provisional
Probab=95.24 E-value=0.2 Score=29.36 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=12.7
Q ss_pred HHHHHHCCCCCCCCCH----HHHHHHHHHHHCCC
Q ss_conf 8887515765432203----23234455452889
Q gi|254781048|r 221 EIVGLLRSGSAYYAPA----SSAIAIAESYLKNK 250 (320)
Q Consensus 221 ~ii~~~~kg~t~~~~a----~a~~~ii~aIl~~~ 250 (320)
+.++.+++|+-..-+| .--..+++++-.++
T Consensus 218 ~~l~~Mk~~a~lIN~aRG~lVde~aL~~AL~~g~ 251 (317)
T PRK06487 218 RELALMKPGALLINTARGGLVDEQALADALRSGH 251 (317)
T ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCC
T ss_conf 9998538997899706865469999999998499
No 235
>PRK07236 hypothetical protein; Provisional
Probab=95.23 E-value=0.035 Score=34.25 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=31.3
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 9987289988981368999999957998699996578
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
|.+.||.|||+|-.|-++|..|...++ ++.+|++.+
T Consensus 4 ~~~~kV~IVGaGiaGL~~A~~L~~~G~-~v~v~Er~~ 39 (386)
T PRK07236 4 MSKPRAVVVGGSLGGLFAANLLRRAGW-DVDVFERSP 39 (386)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCC
T ss_conf 999968999936899999999985899-989986899
No 236
>KOG1430 consensus
Probab=95.23 E-value=0.17 Score=29.82 Aligned_cols=105 Identities=14% Similarity=0.095 Sum_probs=64.8
Q ss_pred CCCCEEEEEC-CCCHHHHHHHHHHHCC-CCEEEEEECCCCC--HHHHHHHHHHHCCCCCCCCEEE-----E-CCCHHHHC
Q ss_conf 9987289988-9813689999999579-9869999657881--2898830762054468875685-----2-69748837
Q gi|254781048|r 1 MKSNKIALIG-SGMIGGTLAHLAVLKK-LGDVVLLDIVDGM--PRGKALDIAESSPVEGFGAQLC-----G-TSDYSDIA 70 (320)
Q Consensus 1 mk~~KV~IIG-aG~VG~~~a~~~~~~~-l~ei~L~D~~~~~--~~g~~~Dl~~~~~~~~~~~~v~-----~-~~d~~~l~ 70 (320)
++.+++.|+| +|.+|.++...+..++ ..|+.++|+.... ...+-.++ + ....... . .....++.
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~-~-----~~~v~~~~~D~~~~~~i~~a~~ 75 (361)
T KOG1430 2 EKKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF-R-----SGRVTVILGDLLDANSISNAFQ 75 (361)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHCC-C-----CCCEEEEECCHHHHHHHHHHCC
T ss_conf 967779998983378999999998456661799953677555651455334-6-----7743687223000055665215
Q ss_pred CCCEEEE-ECCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8978999-5566667655-7467899889999999976541266
Q gi|254781048|r 71 EADVCIV-TAGIPRKPSM-SRDDLLADNLKAIEKVGAGIRKYAP 112 (320)
Q Consensus 71 ~aDivVi-tag~~~~~g~-~R~dll~~N~~i~~~i~~~i~~~~p 112 (320)
++ .||. +|+....-.+ .|.-....|+.=-+.+.+.+.+.+=
T Consensus 76 ~~-~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v 118 (361)
T KOG1430 76 GA-VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGV 118 (361)
T ss_pred CC-EEEEECCCCCCCCCCCCHHHHEEECCHHHHHHHHHHHHHCC
T ss_conf 76-07875165675202356125214140508999999998298
No 237
>PRK05650 short chain dehydrogenase; Provisional
Probab=95.21 E-value=0.28 Score=28.41 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=71.0
Q ss_pred CEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHH-----------HCC
Q ss_conf 72899889-813689999999579986999965788128988307620544688756852697488-----------378
Q gi|254781048|r 4 NKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSD-----------IAE 71 (320)
Q Consensus 4 ~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~-----------l~~ 71 (320)
+||-|.|+ +.+|.++|..++.++ +.++|.|+++++++..+.++.+.-... .....-.+|+++ ...
T Consensus 1 ~rVlITGassGIG~alA~~la~~G-~~V~l~~r~~~~l~~~~~~l~~~g~~~--~~~~~Dvt~~~~~~~~~~~v~~~~g~ 77 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREG-WRLALADVNEEGGEETLKELREAGGDG--FYQRCDVRDYSQLTALAQACEEKWGG 77 (270)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCCCE--EEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 979998876499999999999889-989999798899999999998449928--99984589999999999999998399
Q ss_pred CCEEEEECCCCCCCC--C-CHH---HHHHHHH----HHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 978999556666765--5-746---7899889----99999997654126674088714
Q gi|254781048|r 72 ADVCIVTAGIPRKPS--M-SRD---DLLADNL----KAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 72 aDivVitag~~~~~g--~-~R~---dll~~N~----~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
.|++|-.||...... + +-. ..++.|. ...+.+.+.+++.+ +|-+++++
T Consensus 78 iDiLVNNAGi~~~g~~~~~~~e~~~~~~~vNl~g~~~~~~~~lp~m~~~~-~G~Ivnis 135 (270)
T PRK05650 78 IDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKEQG-KGRIVNIA 135 (270)
T ss_pred CCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEC
T ss_conf 77896247667998620199999999999965999999999997675569-95899985
No 238
>PRK06181 short chain dehydrogenase; Provisional
Probab=95.20 E-value=0.26 Score=28.61 Aligned_cols=111 Identities=16% Similarity=0.171 Sum_probs=67.9
Q ss_pred EEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-----------HHHCC
Q ss_conf 28998-89-8136899999995799869999657881289883076205446887568526974-----------88378
Q gi|254781048|r 5 KIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-----------SDIAE 71 (320)
Q Consensus 5 KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-----------~~l~~ 71 (320)
|+++| |+ +.+|.++|..++..+ +.+++.|+++++++..+.++.+.-. .......-.+|. +.+-.
T Consensus 2 Kv~lITGassGIG~a~A~~la~~G-a~vvl~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~~~~~~~~~~~~~G~ 78 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAG-ARLVLAARNEERLASLAQELANYGA--EALVVATDVSDAEACERLIEAAVAHFGG 78 (263)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCC--CEEEEEECCCCHHHHHHHHHHHHHHHCC
T ss_conf 999995810199999999999879-9899998899999999999995499--6799980799999999999999998299
Q ss_pred CCEEEEECCCCCCC---CCCHH----HHHHHHH----HHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 97899955666676---55746----7899889----99999997654126674088714
Q gi|254781048|r 72 ADVCIVTAGIPRKP---SMSRD----DLLADNL----KAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 72 aDivVitag~~~~~---g~~R~----dll~~N~----~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
-|++|..||..... .++.. .+++.|. ...+...+.+++. +|-+++++
T Consensus 79 iDiLVNNAGi~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~lp~m~~~--~G~Ivnis 136 (263)
T PRK06181 79 IDILVNNAGMTMWSRFDELTDLSVLEDVMRVNYLGAVYCTHAALPHLKAS--QGQIVVVS 136 (263)
T ss_pred CCEEEECCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCEEEEEE
T ss_conf 64899878567888723268699999999998299999999999998638--93799994
No 239
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=95.19 E-value=0.28 Score=28.39 Aligned_cols=111 Identities=17% Similarity=0.193 Sum_probs=64.3
Q ss_pred EEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEE--CCCHHHH------CCCCEE
Q ss_conf 2899889-813689999999579986999965788128988307620544688756852--6974883------789789
Q gi|254781048|r 5 KIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCG--TSDYSDI------AEADVC 75 (320)
Q Consensus 5 KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~--~~d~~~l------~~aDiv 75 (320)
||-|.|+ |.||++++..++.++. ++..+|.....-+...-.+.+. ......... -.|.+.+ .+.|+|
T Consensus 2 kvLVTGg~GFIGs~l~~~Ll~~g~-~V~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~Di~d~~~~~~~~~~~~~d~V 77 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNGH-DVVILDNLCNSKRSVLPVIERL---GGKHPTFVEGDIRNEALMTEILHDHAIDTV 77 (338)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCCCHHHHHHHHHH---CCCCCEEEECCCCCHHHHHHHHHHCCCCEE
T ss_conf 199989876799999999997849-8999988988737678888861---478875998327998999999986599999
Q ss_pred EEECCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 995566667--655746789988999999997654126674088714
Q gi|254781048|r 76 IVTAGIPRK--PSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 76 Vitag~~~~--~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
+-.|+.+.- ....-.+.++.|..-...+.+.+++.+.+- ++.+|
T Consensus 78 ~HlAa~~~~~~~~~~p~~~~~~Nv~gt~nllea~~~~~vkr-~v~~S 123 (338)
T PRK10675 78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKN-LIFSS 123 (338)
T ss_pred EECCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHCCCCE-EEEEC
T ss_conf 98986545462110989998868988999999999739887-99963
No 240
>PRK11749 putative oxidoreductase; Provisional
Probab=95.17 E-value=0.2 Score=29.37 Aligned_cols=80 Identities=21% Similarity=0.254 Sum_probs=44.3
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC------------CCHHHHHH--HHHHHCC---CCCCCCEEEECC
Q ss_conf 987289988981368999999957998699996578------------81289883--0762054---468875685269
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD------------GMPRGKAL--DIAESSP---VEGFGAQLCGTS 64 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~------------~~~~g~~~--Dl~~~~~---~~~~~~~v~~~~ 64 (320)
+.+||+|||+|--|-++|+.|+..+. ++.+||..+ -++.-..+ +++.... -...+..+-..-
T Consensus 139 ~gkkVAIIGaGPAGLsAA~~Lar~G~-~VtVfE~~~~~GGll~~GIP~~rlpk~v~~~ei~~i~~~GV~~~~n~~vG~di 217 (460)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTAVGRDI 217 (460)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCEEECCCC
T ss_conf 89989998967899999999997698-47997047878755754589975544799999999985397898555856643
Q ss_pred CHHHH-CCCCEEEEECCCC
Q ss_conf 74883-7897899955666
Q gi|254781048|r 65 DYSDI-AEADVCIVTAGIP 82 (320)
Q Consensus 65 d~~~l-~~aDivVitag~~ 82 (320)
+.++| ++-|-|+++.|..
T Consensus 218 tl~~L~~~ydAV~lAtGa~ 236 (460)
T PRK11749 218 TLDELRAEYDAVFIGTGLG 236 (460)
T ss_pred CHHHHHHCCCEEEEECCCC
T ss_conf 2887741148899944789
No 241
>PRK07775 short chain dehydrogenase; Provisional
Probab=95.15 E-value=0.25 Score=28.75 Aligned_cols=113 Identities=16% Similarity=0.107 Sum_probs=68.2
Q ss_pred CCEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHC-CCCCCCCEEEECCCH-----------HH
Q ss_conf 8728998-89-8136899999995799869999657881289883076205-446887568526974-----------88
Q gi|254781048|r 3 SNKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESS-PVEGFGAQLCGTSDY-----------SD 68 (320)
Q Consensus 3 ~~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~~v~~~~d~-----------~~ 68 (320)
.+|+++| |+ +.+|.++|..++..+. .+++.++++++++..+..++..- ....+... ..|. +.
T Consensus 9 ~~KtAlVTGAssGIG~aiA~~la~~G~-~V~l~~R~~e~l~~~~~~l~~~g~~~~~~~~D---vtd~~~v~~~v~~~~~~ 84 (275)
T PRK07775 9 ARRPAIVAGASSGIGAATAIELAAHGF-PVALGARRVEKCEEIVDKIRADGGEAVAFPLD---VTDPDSVKSFVAQATEA 84 (275)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEEEC---CCCHHHHHHHHHHHHHH
T ss_conf 999799946235999999999998799-89999898999999999999649948999912---89999999999999998
Q ss_pred HCCCCEEEEECCCCCCCCC---C---HHHHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 3789789995566667655---7---4678998899----9999997654126674088714
Q gi|254781048|r 69 IAEADVCIVTAGIPRKPSM---S---RDDLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 69 l~~aDivVitag~~~~~g~---~---R~dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
+-.-|++|..||....... + -...+..|.. +.+.+.+.+.+.. .|-+++++
T Consensus 85 ~G~iDiLVnNAG~~~~~~~~e~~~e~~~~~~~vNl~g~~~~~~a~lP~M~~~~-~G~IV~is 145 (275)
T PRK07775 85 LGDIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMVERR-RGDLIFVG 145 (275)
T ss_pred HCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEE
T ss_conf 59965999767568888601099999999998852799999999999999759-95799984
No 242
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=95.15 E-value=0.25 Score=28.76 Aligned_cols=29 Identities=28% Similarity=0.618 Sum_probs=12.2
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 2899889813689999999579986999965
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDI 35 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~ 35 (320)
||.|+=.-..+. ..+-.++.++|+..+|-
T Consensus 2 ki~~ld~~~~~~--~~~~~l~~~~e~~~~~~ 30 (311)
T PRK08410 2 KIVILDAKTLGD--VDLSVFNEFGDFQIYDT 30 (311)
T ss_pred EEEEEECCCCCC--CCHHHHHCCCCEEEECC
T ss_conf 599993786772--26587705775899789
No 243
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.14 E-value=0.29 Score=28.29 Aligned_cols=115 Identities=20% Similarity=0.234 Sum_probs=67.8
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHH-----------HH
Q ss_conf 9872899889-81368999999957998699996578812898830762054468875685269748-----------83
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYS-----------DI 69 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~-----------~l 69 (320)
|.+.+-|.|+ +.+|..+|..++..+ ++++++|+++++++.....+...-. .......-..+++ ..
T Consensus 4 ~~Kv~lITGgs~GIG~a~a~~la~~G-~~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADG-ARVVIYDSNEEAAEALAEELRAAGG--EAALLVFDVTDEAAVRALIEAAVERF 80 (246)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCC--CEEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 99889993897589999999999879-9999997999999999999996599--48999972899999999999999974
Q ss_pred CCCCEEEEECCCCC-CCC--CCH---HHHHHHHH----HHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 78978999556666-765--574---67899889----99999997654126674088714
Q gi|254781048|r 70 AEADVCIVTAGIPR-KPS--MSR---DDLLADNL----KAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 70 ~~aDivVitag~~~-~~g--~~R---~dll~~N~----~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
..-|++|..||... ++- .+. ...++.|. .+.+.+.+.+.+.. .|-+++++
T Consensus 81 g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~II~is 140 (246)
T PRK05653 81 GGLDVLVNNAGITRDALLPRMSEEDWDRVIDTNLTGTFNVCRAALPPMRKAR-YGRIVNIS 140 (246)
T ss_pred CCCCEEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEC
T ss_conf 9986999899999998801399999999999860889999999999999846-99789983
No 244
>PRK06940 short chain dehydrogenase; Provisional
Probab=95.14 E-value=0.29 Score=28.28 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=50.5
Q ss_pred CCEEEEEC-CCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEE--EECCCHH----------HH
Q ss_conf 87289988-98136899999995799869999657881289883076205446887568--5269748----------83
Q gi|254781048|r 3 SNKIALIG-SGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQL--CGTSDYS----------DI 69 (320)
Q Consensus 3 ~~KV~IIG-aG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v--~~~~d~~----------~l 69 (320)
++||.|+| +|.+|..+|..+.. + +.+++.|+++++++..+.++++.- ..... .-.+|.+ .+
T Consensus 4 ~~kV~v~tGa~GIG~aiA~~la~-G-a~vvi~~~~~~~l~~~~~~l~~~g----~~~~~~~~Dvs~~~~v~~l~~~~~~~ 77 (277)
T PRK06940 4 SKEVVVVIGAGGMGQAIARRVGS-G-KTVLLADYNEENLQAVARTLREAG----FDVITQQVDVSSRESVKALAQTAATL 77 (277)
T ss_pred CCCEEEECCCCHHHHHHHHHHHH-C-CEEEEEECCHHHHHHHHHHHHHCC----CEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99299997816999999999981-9-989999898899999999987228----82999982579989999999999986
Q ss_pred CCCCEEEEECCCCCC
Q ss_conf 789789995566667
Q gi|254781048|r 70 AEADVCIVTAGIPRK 84 (320)
Q Consensus 70 ~~aDivVitag~~~~ 84 (320)
-.-|++|..||....
T Consensus 78 G~idiLVnnAG~~~~ 92 (277)
T PRK06940 78 GAVTGLVHTAGVSPS 92 (277)
T ss_pred CCCCEEEECCCCCCC
T ss_conf 998799988867866
No 245
>pfam01118 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase
Probab=95.12 E-value=0.075 Score=32.12 Aligned_cols=74 Identities=23% Similarity=0.324 Sum_probs=41.0
Q ss_pred EEEEECC-CCHHHHHHHHHHHCCCCE-EEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCC
Q ss_conf 2899889-813689999999579986-9999657881289883076205446887568526974883789789995566
Q gi|254781048|r 5 KIALIGS-GMIGGTLAHLAVLKKLGD-VVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGI 81 (320)
Q Consensus 5 KV~IIGa-G~VG~~~a~~~~~~~l~e-i~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~ 81 (320)
||+|+|+ |.+|+.+.-++....--+ ..++.... ..|+...-.+-.........+. ..+.+.+.++|+++.+.+.
T Consensus 1 kvaIiGatGyvG~eLirlL~~hp~~~i~~l~~s~~--saG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dvvf~alp~ 76 (121)
T pfam01118 1 KVAIVGATGYVGQELLRLLAEHPPLELVALVASSR--SAGKKVAFAGPWLTGGVDLLLE-DVDPEDLKDVDIVFFALPA 76 (121)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECC--CCCCCHHHHCCCCCCCCCCEEE-ECCHHHHCCCCEEEECCCH
T ss_conf 99998936199999999997188755137885056--5896014416542466664477-5897785389899983876
No 246
>PRK07060 short chain dehydrogenase; Provisional
Probab=95.11 E-value=0.24 Score=28.77 Aligned_cols=114 Identities=13% Similarity=0.139 Sum_probs=65.7
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECC----CHHHHCCCCEEE
Q ss_conf 9872899889-81368999999957998699996578812898830762054468875685269----748837897899
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTS----DYSDIAEADVCI 76 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~----d~~~l~~aDivV 76 (320)
+.+++-|.|+ +.+|..++..++..+ +++++.|++++.++..+.++..- .....+.... -.+....-|++|
T Consensus 8 ~gK~~lVTG~~~GIG~aia~~la~~G-a~V~~~~r~~~~~~~~~~~~~~~----~~~~Dv~~~~~v~~~~~~~g~iDilV 82 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAARG-ARVVAAARNQADLDRLAGETGCE----PLRLDVGDDAAIRAALAGAGAFDGLV 82 (245)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHCCE----EEEEECCCHHHHHHHHHHCCCCCEEE
T ss_conf 99989994777689999999999879-99999979989999999863987----99980799999999999659998999
Q ss_pred EECCCCC-CCCC--C---HHHHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 9556666-7655--7---4678998899----9999997654126674088714
Q gi|254781048|r 77 VTAGIPR-KPSM--S---RDDLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 77 itag~~~-~~g~--~---R~dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
..||... +|-. + -...+..|.. +.+...+.+.+....|.+|.++
T Consensus 83 nnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~k~~~~~m~~~~~~G~IInis 136 (245)
T PRK07060 83 NCAGIASLESAIDMTAAGFDRVMAVNARGALLVARHVARAMIRAGRGGSIVNVS 136 (245)
T ss_pred ECCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 898879999901399999999999970999999999999999808980799986
No 247
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=95.09 E-value=0.038 Score=34.04 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=31.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCH
Q ss_conf 987289988981368999999957998699996578812
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMP 40 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~ 40 (320)
++++|+|||||-+|.++|+.++.++. ++.++|..+..+
T Consensus 255 ~~~~VaVIGAGIAGas~A~~LA~rG~-~VtVlDr~~~~A 292 (660)
T PRK01747 255 RNRDAAIIGGGIAGAALALALARRGW-QVTLYEADEAPA 292 (660)
T ss_pred CCCCEEEECCHHHHHHHHHHHHHCCC-EEEEEECCCCCC
T ss_conf 88718998938999999999997899-689994798756
No 248
>PRK07814 short chain dehydrogenase; Provisional
Probab=95.06 E-value=0.2 Score=29.27 Aligned_cols=113 Identities=17% Similarity=0.175 Sum_probs=68.8
Q ss_pred CCEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEE--CCCH-----------H
Q ss_conf 8728998-89-813689999999579986999965788128988307620544688756852--6974-----------8
Q gi|254781048|r 3 SNKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCG--TSDY-----------S 67 (320)
Q Consensus 3 ~~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~--~~d~-----------~ 67 (320)
+.|+++| |+ +.+|..+|..++..+. ++++.|+++++++..+.+++..- .....+. ..|. +
T Consensus 9 ~gKvalITGgs~GIG~aia~~la~~Ga-~V~i~~~~~~~l~~~~~~i~~~g----~~~~~~~~Dv~~~~~v~~~v~~~~~ 83 (263)
T PRK07814 9 DGQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAG----RRAHVVAADLAHPEATAGLAGQAVE 83 (263)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCC----CEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999899958966899999999998799-89999698999999999998529----9289998158999999999999999
Q ss_pred HHCCCCEEEEECCCCCC-C--CCCHH---HHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 83789789995566667-6--55746---78998899----9999997654126674088714
Q gi|254781048|r 68 DIAEADVCIVTAGIPRK-P--SMSRD---DLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 68 ~l~~aDivVitag~~~~-~--g~~R~---dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
.+..-|++|-.||.... | ..+.. +.+..|.. ..+...+.+.+....|.++++|
T Consensus 84 ~~G~iDiLVnNAg~~~~~~~~~~~~e~w~~~~~vNl~~~~~~~~~~~~~m~~~~~~G~IInis 146 (263)
T PRK07814 84 AFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTRAAVPLMLEHSGGGSIINIT 146 (263)
T ss_pred HHCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 829988999898667888445488999999999971999999999999999847994699981
No 249
>PRK05867 short chain dehydrogenase; Provisional
Probab=95.05 E-value=0.31 Score=28.12 Aligned_cols=118 Identities=16% Similarity=0.195 Sum_probs=70.3
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCC-CCCCCCEEEECCC--------HHHHCC
Q ss_conf 9872899889-81368999999957998699996578812898830762054-4688756852697--------488378
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSP-VEGFGAQLCGTSD--------YSDIAE 71 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~-~~~~~~~v~~~~d--------~~~l~~ 71 (320)
+.+.+-|.|+ +.+|..+|..++..+ +++++.|+++++++..+.++...-. .......+....+ .+.+-.
T Consensus 8 ~gKvalVTGas~GIG~aiA~~la~~G-a~V~i~~r~~~~~~~~~~ei~~~g~~~~~~~~Dvt~~~~v~~~v~~~~~~~G~ 86 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAG-AQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGG 86 (253)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99989997956599999999999869-99999979889999999999845991999983699999999999999999599
Q ss_pred CCEEEEECCCCC-CCCC--CHH---HHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 978999556666-7655--746---78998899----9999997654126674088714
Q gi|254781048|r 72 ADVCIVTAGIPR-KPSM--SRD---DLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 72 aDivVitag~~~-~~g~--~R~---dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
-|++|..||... +|-. +.. ..+..|.. ..+...+.+.+.+..+.+++++
T Consensus 87 iDiLVnNAG~~~~~~~~~~~~e~w~~~~~vNl~g~f~~~~~~~~~m~~~~~gg~Ivnis 145 (253)
T PRK05867 87 IDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTA 145 (253)
T ss_pred CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 85999899778887501099999999999975999999999999999818998038875
No 250
>KOG2711 consensus
Probab=95.04 E-value=0.31 Score=28.10 Aligned_cols=124 Identities=16% Similarity=0.276 Sum_probs=67.2
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCC-----CCEEEEEECCCCCHHHHHHHHHHHC----------CCCCCCCEEEECCC
Q ss_conf 99872899889813689999999579-----9869999657881289883076205----------44688756852697
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKK-----LGDVVLLDIVDGMPRGKALDIAESS----------PVEGFGAQLCGTSD 65 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~-----l~ei~L~D~~~~~~~g~~~Dl~~~~----------~~~~~~~~v~~~~d 65 (320)
|.+.||+|||+|+=|+++|-.+..+- ....+=+=..+++..+.+.-|.+.. +-...+.++...+|
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCH
T ss_conf 07537999816808999999986525405566730367775013377057899875155634233678659977676523
Q ss_pred H-HHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE--------CCC-CHHHHHHHHHHCC
Q ss_conf 4-88378978999556666765574678998899999999765412667408871--------484-2078999988449
Q gi|254781048|r 66 Y-SDIAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICI--------TNP-LDAMVWALQKFSG 135 (320)
Q Consensus 66 ~-~~l~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivv--------tNP-vDv~~~~~~~~sg 135 (320)
. ++++||||+|+.. |- +--..|.+++...+++ ++..|-. --| +..++.+..+..|
T Consensus 99 l~ea~~dADilvf~v--Ph----------Qf~~~ic~~l~g~vk~---~~~aISL~KG~e~~~~g~~i~liS~iI~~~lg 163 (372)
T KOG2711 99 LVEAAKDADILVFVV--PH----------QFIPRICEQLKGYVKP---GATAISLIKGVEVGEEGPGIRLISQIIHRALG 163 (372)
T ss_pred HHHHHCCCCEEEEEC--CH----------HHHHHHHHHHHCCCCC---CCEEEEEECCEECCCCCCCEEEHHHHHHHHHC
T ss_conf 998843388899948--71----------5479999998542579---98078854041416888844636999999868
Q ss_pred CCHH
Q ss_conf 9865
Q gi|254781048|r 136 LPSH 139 (320)
Q Consensus 136 ~~~~ 139 (320)
.|-.
T Consensus 164 I~~~ 167 (372)
T KOG2711 164 IPCS 167 (372)
T ss_pred CCCE
T ss_conf 9703
No 251
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.99 E-value=0.1 Score=31.19 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=29.4
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 28998898136899999995799869999657
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIV 36 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~ 36 (320)
||-|||+|.+|..++..+++.++.+|.++|-+
T Consensus 1 kvlvvG~GglG~e~~k~la~~Gvg~i~ivD~d 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 98999288889999999998489859997399
No 252
>PRK13529 malate dehydrogenase; Provisional
Probab=94.98 E-value=0.32 Score=27.99 Aligned_cols=131 Identities=14% Similarity=0.218 Sum_probs=74.1
Q ss_pred CCEEEEECCCCHHHHHHHHH----HHCCCC------EEEEEECCCCCHHHHHHHHHHHC-CCCCCCCE------EEECCC
Q ss_conf 87289988981368999999----957998------69999657881289883076205-44688756------852697
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLA----VLKKLG------DVVLLDIVDGMPRGKALDIAESS-PVEGFGAQ------LCGTSD 65 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~----~~~~l~------ei~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~~------v~~~~d 65 (320)
..||.+.|||.-|..+|.++ ...+++ .+.++|..-=..++ .-||.+.. .|...... .....+
T Consensus 295 d~riv~~GAGsAg~GIA~~l~~~~~~~Gls~eeA~~~i~~~D~~GLl~~~-R~dL~~~k~~fa~~~~~~~~~~~~~~~~~ 373 (563)
T PRK13529 295 DQRVVFLGAGSAGCGIAEQIVAAMVREGLSEEEARKRFFMVDRQGLLTDD-MPDLLDFQKPFAQKREELSGWKTENDGIS 373 (563)
T ss_pred HCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHCEEEEEECCCCEECC-CCCCCHHHHHHCCCCHHHCCCCCCCCCCC
T ss_conf 84799965774878999999999987699989871439999489813579-98760999986688545415455677899
Q ss_pred H-HHHCC--CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCH---HHHHHHHHHCCCCHH
Q ss_conf 4-88378--97899955666676557467899889999999976541266740887148420---789999884499865
Q gi|254781048|r 66 Y-SDIAE--ADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLD---AMVWALQKFSGLPSH 139 (320)
Q Consensus 66 ~-~~l~~--aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvD---v~~~~~~~~sg~~~~ 139 (320)
. +.++. +++.|=+.|.| |. + -+++.+.++++++..|+.-.|||.. ....-++++|. -.
T Consensus 374 L~evV~~vkPtvLIG~S~~~---g~-----F------t~evv~~Ma~~~erPIIF~LSNPT~~aE~tpeda~~wT~--Gr 437 (563)
T PRK13529 374 LLEVVRNVKPTVLIGVSGQP---GA-----F------TEEIIKEMAAHCERPIIFPLSNPTSRAEATPEDIIAWTD--GR 437 (563)
T ss_pred HHHHHHHCCCCEEEEECCCC---CC-----C------CHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHCC--CC
T ss_conf 99999745898899837899---98-----7------999999998459998898678984325589899974116--97
Q ss_pred HHHHHCCCHHH
Q ss_conf 61100052568
Q gi|254781048|r 140 MVVGMAGILDS 150 (320)
Q Consensus 140 rViG~Gt~LDs 150 (320)
-+|.+|+-.+.
T Consensus 438 ai~AtGSPF~p 448 (563)
T PRK13529 438 ALVATGSPFAP 448 (563)
T ss_pred EEEEECCCCCC
T ss_conf 89996898887
No 253
>PRK06194 hypothetical protein; Provisional
Probab=94.96 E-value=0.33 Score=27.96 Aligned_cols=165 Identities=18% Similarity=0.180 Sum_probs=89.7
Q ss_pred CEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCC-CCCCCCEEEECCCHHH-----------H
Q ss_conf 728998-89-81368999999957998699996578812898830762054-4688756852697488-----------3
Q gi|254781048|r 4 NKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSP-VEGFGAQLCGTSDYSD-----------I 69 (320)
Q Consensus 4 ~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~-~~~~~~~v~~~~d~~~-----------l 69 (320)
.|+++| |+ +.+|..+|..++..+ +.++|.|++++.++..+.+|...-. ....... .+|.++ +
T Consensus 6 gKvavITGassGIG~a~A~~la~~G-a~Vvl~d~~~~~l~~~~~~l~~~g~~v~~~~~D---Vsd~~~v~~l~~~~~~~f 81 (301)
T PRK06194 6 GKVAVITGAASGFGREFARIGARLG-MKLVLADVQQDALDRAVAELRAQGAEVLGVRTD---VSDAAQVEALADAALERF 81 (301)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCCEEEEEECC---CCCHHHHHHHHHHHHHHH
T ss_conf 9989992737799999999999879-989999798899999999998459849999656---899999999999999983
Q ss_pred CCCCEEEEECCCCCCCC---CCHH---HHHHHHHH----HHHHHHHHHHHCCC-----CCCEEEECCCC------HHHHH
Q ss_conf 78978999556666765---5746---78998899----99999976541266-----74088714842------07899
Q gi|254781048|r 70 AEADVCIVTAGIPRKPS---MSRD---DLLADNLK----AIEKVGAGIRKYAP-----NSFVICITNPL------DAMVW 128 (320)
Q Consensus 70 ~~aDivVitag~~~~~g---~~R~---dll~~N~~----i~~~i~~~i~~~~p-----~~i~ivvtNPv------Dv~~~ 128 (320)
-..|++|..||...... .+-. ..+..|.. ..+.+.+.+.+.+. .|.+++++=-. ..-+|
T Consensus 82 G~iDiLVNNAGi~~~~~~~e~~~edw~~v~~VNl~G~~~~~r~~lP~M~~~~~~~~~~~G~IVNisSiaG~~~~p~~~~Y 161 (301)
T PRK06194 82 GAVHLLFNNAGVGAGGLLWENSLADWEWVLGVNLMGVIHGVRIFTPLMLAAAEKDPAYEGHIVNTASMAGLLAPPAMGVY 161 (301)
T ss_pred CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHCCCCCCCCHH
T ss_conf 99379995576678887344999999999999819999999999999997688788986499994542323589997078
Q ss_pred HHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCCCC
Q ss_conf 998844998656110005256899999999971987335505675078852465102354
Q gi|254781048|r 129 ALQKFSGLPSHMVVGMAGILDSARFRYFLAQEFGVSVESVTALVLGSHGDSMVPMLRYAT 188 (320)
Q Consensus 129 ~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~l~v~~~~V~~~ViGeHGds~vp~~S~~~ 188 (320)
-+.|. =|+|+. ++.| ..|......|.+-++-= |--.-|.|.+.+
T Consensus 162 ~ASK~------AV~glT---~sLa------~EL~~~~~~IrV~~lcP-G~V~T~i~~s~r 205 (301)
T PRK06194 162 NVSKH------AVVSLT---ETLY------QDLRLVTDQVGASVLCP-YFVPTGIWQSHR 205 (301)
T ss_pred HHHHH------HHHHHH---HHHH------HHHHHCCCCEEEEEEEC-CCCCCCCCCCCC
T ss_conf 99999------999999---9999------99975697979999972-888788674565
No 254
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.96 E-value=0.039 Score=33.96 Aligned_cols=134 Identities=13% Similarity=0.218 Sum_probs=74.4
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 99872899889813689999999579986999965788128988307620544688756852697488378978999556
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
+++.||.|+|+|.+|+.++..++.-++.+|.++|-+.- +++ +.+...... ..++|+
T Consensus 17 L~~s~VlVvG~GGLG~~v~~~La~aGVg~i~ivD~D~V-------e~s------NL~RQ~l~~-----~~~~di------ 72 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV-------STE------DLGSNFFLD-----AEVSNS------ 72 (198)
T ss_pred HHHCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCC-------CCC------CCCCCEEEC-----CCCCCC------
T ss_conf 97098999877889999999999749986999959963-------533------577575026-----541116------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHH-CCCCHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 66676557467899889999999976541266740887148420789999884-49986561100052568999999999
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKF-SGLPSHMVVGMAGILDSARFRYFLAQ 159 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~-sg~~~~rViG~Gt~LDs~R~~~~ia~ 159 (320)
|+.|.+ ...+++.+.+|+..+-.++++......-..++ .+++ -|+-.....++-..-.-.+.
T Consensus 73 -----G~~Ka~----------~a~~~l~~lNp~v~i~~~~~~~~~~~~n~~~~~~~~D--lVvd~~dn~~~r~~in~~c~ 135 (198)
T cd01485 73 -----GMNRAA----------ASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFT--LVIATEENYERTAKVNDVCR 135 (198)
T ss_pred -----CCCHHH----------HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCC--EEEECCCCHHHHHHHHHHHH
T ss_conf -----872999----------9999999779997799982244577868999984899--99999999999999999999
Q ss_pred HCCCCCCCCEEEEECCCC
Q ss_conf 719873355056750788
Q gi|254781048|r 160 EFGVSVESVTALVLGSHG 177 (320)
Q Consensus 160 ~l~v~~~~V~~~ViGeHG 177 (320)
+.+++ -|++-+.|-.|
T Consensus 136 ~~~iP--lI~ga~~G~~G 151 (198)
T cd01485 136 KHHIP--FISCATYGLIG 151 (198)
T ss_pred HHCCC--EEEEECCCCEE
T ss_conf 92998--89997456685
No 255
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=94.89 E-value=0.038 Score=34.00 Aligned_cols=37 Identities=22% Similarity=0.463 Sum_probs=33.1
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 9987289988981368999999957998699996578
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
++..+|.|+|.|.||+-++..|+..++.+|.|+|.+.
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~ 64 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDD 64 (263)
T ss_pred HHCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECHH
T ss_conf 7509489994584539999999981888189971201
No 256
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=94.89 E-value=0.25 Score=28.72 Aligned_cols=32 Identities=28% Similarity=0.326 Sum_probs=25.6
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 872899889813689999999579986999965
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDI 35 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~ 35 (320)
-+||+|||+|--|.++|+.+...++ +..++|.
T Consensus 17 gkkV~IIGaGPaGlsAA~~aa~~G~-~v~viEk 48 (350)
T PRK12770 17 GKKVAIIGAGPAGLAAAGYLACLGH-EVHVYDK 48 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-CEEEEEE
T ss_conf 7989999955889999999997899-8599953
No 257
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=94.87 E-value=0.17 Score=29.80 Aligned_cols=67 Identities=19% Similarity=0.349 Sum_probs=41.6
Q ss_pred CCCEEEEECCCCHHHHHHHHH--HHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHH---CCCCEEE
Q ss_conf 987289988981368999999--95799869999657881289883076205446887568526974883---7897899
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLA--VLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDI---AEADVCI 76 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~--~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l---~~aDivV 76 (320)
+.+++++||+|+.|++++.-- ...+..=..++|.++++. |.. -....+...++.++. .+.++.|
T Consensus 83 ~~~~v~lvGaGnLG~AL~~y~gf~~~gf~Iva~FD~dp~ki-G~~----------i~gi~V~~i~~L~~~i~~~~i~iaI 151 (211)
T PRK05472 83 KTTNVALVGAGNLGRALLNYNGFKKRGFKIVAAFDVDPEKV-GTK----------IGGIPVYHIDELEEVIKENDIEIAI 151 (211)
T ss_pred CCCEEEEECCCHHHHHHHHCCCHHHCCCEEEEEECCCHHHC-CCE----------ECCEEEECHHHHHHHHHHHCCCEEE
T ss_conf 97508998887799999848762318978999974897885-988----------3883873499999999981993899
Q ss_pred EEC
Q ss_conf 955
Q gi|254781048|r 77 VTA 79 (320)
Q Consensus 77 ita 79 (320)
+|.
T Consensus 152 iaV 154 (211)
T PRK05472 152 LTV 154 (211)
T ss_pred EEC
T ss_conf 955
No 258
>PRK09134 short chain dehydrogenase; Provisional
Probab=94.87 E-value=0.35 Score=27.80 Aligned_cols=119 Identities=16% Similarity=0.204 Sum_probs=66.8
Q ss_pred CCCCEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCC-CCCCCCEEEECCC----H----HHH
Q ss_conf 998728998-89-81368999999957998699996578812898830762054-4688756852697----4----883
Q gi|254781048|r 1 MKSNKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSP-VEGFGAQLCGTSD----Y----SDI 69 (320)
Q Consensus 1 mk~~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~-~~~~~~~v~~~~d----~----~~l 69 (320)
|.+.|+++| |+ +.+|..+|..++..+..=++.++.++++++..+.+++..-. .......+....+ + +.+
T Consensus 6 ~~~~KvalVTGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dl~~~~~~~~~v~~~~~~~ 85 (256)
T PRK09134 6 MAAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAQVRALVARASAAL 85 (256)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 99999799948867899999999998799899984999899999999999649918999755899999999999999982
Q ss_pred CCCCEEEEECCCCCCCC---CCHH---HHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 78978999556666765---5746---78998899----9999997654126674088714
Q gi|254781048|r 70 AEADVCIVTAGIPRKPS---MSRD---DLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 70 ~~aDivVitag~~~~~g---~~R~---dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
-.-|++|..||...... .+.. ..++.|.. +.+...+.+.+. ..|.++.++
T Consensus 86 G~iDiLVnNAg~~~~~~~~~~~~e~w~~~~~vNl~~~~~~~q~~~~~m~~~-~~G~IVni~ 145 (256)
T PRK09134 86 GPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPAD-ARGLVVNMI 145 (256)
T ss_pred CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEEEC
T ss_conf 998789988711689970209999999997540105999999999998860-780699980
No 259
>PRK08605 D-lactate dehydrogenase; Validated
Probab=94.80 E-value=0.22 Score=29.12 Aligned_cols=10 Identities=10% Similarity=0.099 Sum_probs=4.4
Q ss_pred HHHHHHHCCC
Q ss_conf 4455452889
Q gi|254781048|r 241 AIAESYLKNK 250 (320)
Q Consensus 241 ~ii~aIl~~~ 250 (320)
.+++|+-.++
T Consensus 245 aL~~AL~~g~ 254 (332)
T PRK08605 245 ALLDALDNGL 254 (332)
T ss_pred HHHHHHHCCC
T ss_conf 9999998198
No 260
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.79 E-value=0.21 Score=29.19 Aligned_cols=89 Identities=24% Similarity=0.489 Sum_probs=49.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHH-HCCCCEEEEECC
Q ss_conf 9872899889813689999999579986999965788128988307620544688756852697488-378978999556
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSD-IAEADVCIVTAG 80 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~-l~~aDivVitag 80 (320)
+.++++|||.|++|+.+|..+..-+ .++..||+.+... + .. .....++++ ++.||+|.+-.
T Consensus 150 ~GKtlGIIG~G~IG~~VA~~a~~fG-m~Vi~yD~~~~~~------~---------~~-~~~~~sl~ell~~sD~IslH~- 211 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESLG-MRVIFYDIEDKLP------L---------GN-ATQVGSLEELLAQSDVVSLHV- 211 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEECCHHHCC------C---------CC-CEECCCHHHHHHHCCEEEECC-
T ss_conf 5878986367547699999998769-9899978602125------6---------68-467488999987599999826-
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 6667655746789988999999997654126674088714
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
|..+. ||. ++ |.+ .++..-|.+++|+.+
T Consensus 212 -Plt~~-T~~-lI--n~~-------~l~~MK~ga~LIN~A 239 (409)
T PRK11790 212 -PETPS-TKN-MI--GAE-------ELALMKPGAILINAS 239 (409)
T ss_pred -CCCHH-HHC-CC--CHH-------HHHHCCCCCEEEECC
T ss_conf -79846-631-04--399-------997269998999868
No 261
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=94.78 E-value=0.3 Score=28.22 Aligned_cols=46 Identities=28% Similarity=0.399 Sum_probs=29.6
Q ss_pred CCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 7408871484207899998844998656110005256899999999971987
Q gi|254781048|r 113 NSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQEFGVS 164 (320)
Q Consensus 113 ~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~l~v~ 164 (320)
+.++++-.-|+-.++..+.|..|. ++|+.+ |....|..+|+.+|.+
T Consensus 165 ~~VlV~GaG~vGl~~~~~ak~~Ga--~~Vi~~----d~~~~kl~~a~~lGa~ 210 (341)
T PRK05396 165 EDVLITGAGPIGIMAAAVAKHVGA--RHVVIT----DVNEYRLELARKMGAT 210 (341)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--EEEEEE----ECCHHHHHHHHHCCCC
T ss_conf 869998997543299999998499--289999----4899999989864994
No 262
>TIGR00065 ftsZ cell division protein FtsZ; InterPro: IPR000158 In bacteria, FtsZ , , is an essential cell division protein which appears to be involved in the initiation of this event. It assembles into a cytokinetic ring on the inner surface of the cytoplasmic membrane at the place where division will occur. The ring serves as a scaffold that is disassembled when septation is completed. FtsZ ring formation is initiated at a single site on one side of the bacterium and appears to grow bidirectionally. In Escherichia coli, MinCD IPR005526 from INTERPRO, encoded by the MinB locus, form a complex which appears to block the formation of FtsZ rings at the cell poles, at the ancient mid cell division sites, whilst MinE, encoded at the same locus, specifically prevents the action of MinCD at mid cell. FtsZ is a GTP binding protein PDOC00199 from PROSITEDOC with a GTPase activity. It undergoes GTP-dependent polymerization into filaments (or tubules) that seem to form a cytoskeleton involved in septum synthesis. The structure and the properties of FtsZ clearly provide it with the capacity for the cytoskeletal, perhaps motor role, necessary for "contraction" along the division plane. In addition, however, the FtsZ ring structure provides the framework for the recruitment or assembly of the ten or so membrane and cytoplasmic proteins, uniquely required for cell division in E. coli or Bacillus subtilis, some of which are required for biogenesis of the new hemispherical poles of the two daughter cells. FtsZ can polymerize into various structures, for example a single linear polymer of FtsZ monomers, called a protofilament. Protofilaments can associate laterally to form pairs (sometimes called thick filaments, bundles (ill-defined linear associations of multiple protofilaments or thick filaments, sheets (parallel or anti-parallel two-dimensional associations of thick filaments and tubes (anti-parallel associations of thick filaments in a circular fashion to form a tubular structure). In addition, small circles of FtsZ monomers (a short protofilament bent around to join itself, apparently head to tail) have been observed and termed mini-rings. FtsZ is a protein of about 400 residues which is well conserved across bacterial species and which is also present in the chloroplast of plants as well as in archaebacteria . FtsZ shows structural similarity with eukaryotic tubulins. This similarity is probably both evolutionary and functionally significant.; GO: 0005525 GTP binding, 0005737 cytoplasm.
Probab=94.72 E-value=0.16 Score=29.90 Aligned_cols=109 Identities=19% Similarity=0.266 Sum_probs=62.1
Q ss_pred CCEEEEECCCCHHHHHHHHHHHC----CCCEEEEEECCCCCHHHHHHHHHH-HCCC--CC----------CCCEE-----
Q ss_conf 87289988981368999999957----998699996578812898830762-0544--68----------87568-----
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLK----KLGDVVLLDIVDGMPRGKALDIAE-SSPV--EG----------FGAQL----- 60 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~----~l~ei~L~D~~~~~~~g~~~Dl~~-~~~~--~~----------~~~~v----- 60 (320)
+.||.|||+|.=|.-....+... ++..+-.|=+|.|. |+|-... +-.- .+ -.|.+
T Consensus 17 ~akI~ViGvGGgGnN~v~rm~~~~p~l~~~g~~fiA~NTD~---Q~L~~~~~A~~kilIG~~~TrGLGAGG~P~iG~~AA 93 (365)
T TIGR00065 17 KAKIKVIGVGGGGNNAVNRMVEEYPELGVEGVEFIAINTDA---QHLKTTKYAPKKILIGKKLTRGLGAGGNPEIGRKAA 93 (365)
T ss_pred CEEEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCCH---HHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf 62899998558823589999870553223762699974837---854115562413561573355676799838889998
Q ss_pred EECCC-H-HHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHH
Q ss_conf 52697-4-88378978999556666765574678998899999999765412667408871484207
Q gi|254781048|r 61 CGTSD-Y-SDIAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDA 125 (320)
Q Consensus 61 ~~~~d-~-~~l~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv 125 (320)
..+.| . +.++|||+|+||||.=-.-| ..=+|++.++++.+.-. .+-|||=|-..
T Consensus 94 ees~d~i~~~l~GaDmVFitAGmGGGTG-------TGAAPVvA~~AK~~GaL----TvavVT~PF~~ 149 (365)
T TIGR00065 94 EESRDEIRELLEGADMVFITAGMGGGTG-------TGAAPVVAKIAKELGAL----TVAVVTKPFKF 149 (365)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCC-------CCCHHHHHHHHHHCCEE----EEEEECCCCCC
T ss_conf 9889999997038881899725866866-------66357899999757906----99984287410
No 263
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.72 E-value=0.32 Score=27.99 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=30.3
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHH
Q ss_conf 289988981368999999957998699996578812898
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGK 43 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~ 43 (320)
||++||.|..|..+|.-++..+. ++..+|+++++++..
T Consensus 2 kIGfIGLG~MG~~mA~nL~~~G~-~V~v~dr~~~~~~~~ 39 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEAL 39 (301)
T ss_pred EEEEECHHHHHHHHHHHHHHCCC-EEEEECCCHHHHHHH
T ss_conf 79998345879999999996899-079976999999999
No 264
>PRK06057 short chain dehydrogenase; Provisional
Probab=94.68 E-value=0.38 Score=27.50 Aligned_cols=110 Identities=17% Similarity=0.175 Sum_probs=63.8
Q ss_pred EEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH--------HHHCCCCE
Q ss_conf 28998-89-8136899999995799869999657881289883076205446887568526974--------88378978
Q gi|254781048|r 5 KIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY--------SDIAEADV 74 (320)
Q Consensus 5 KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~--------~~l~~aDi 74 (320)
|+++| |+ +.+|..+|..++..+ +.+++.|+++++.+..+.+++-. +.. ..+....+. +.+-.-|+
T Consensus 8 KvalVTGas~GIG~aia~~la~~G-a~Vvi~d~~~~~~~~~~~~~~~~--~~~--~Dv~~~~~v~~~v~~~~~~~G~iDi 82 (255)
T PRK06057 8 RVAVITGGASGIGLATARRMRAEG-ATVVVGDIDPEAGKAAADELGGL--FVQ--VDVTDEDAVNALFDTAAETYGSVDI 82 (255)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCE--EEE--EECCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 989996848889999999999869-98999969889999999864997--999--8169999999999999998199878
Q ss_pred EEEECCCCC-CC----CCCH---HHHHHHHHHH----HHHHHHHHHHCCCCCCEEEEC
Q ss_conf 999556666-76----5574---6789988999----999997654126674088714
Q gi|254781048|r 75 CIVTAGIPR-KP----SMSR---DDLLADNLKA----IEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 75 vVitag~~~-~~----g~~R---~dll~~N~~i----~~~i~~~i~~~~p~~i~ivvt 120 (320)
+|..||... .. ..+. ...+..|..= .+...+.+.+.+ .|-+++++
T Consensus 83 LVNnAGi~~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnis 139 (255)
T PRK06057 83 AFNNAGISPPEDDSILNTGLDAWQRVQDVNLKSVYLCCKAALPHMVEAG-KGSIINTA 139 (255)
T ss_pred EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEC
T ss_conf 9988855788998620099999999999982999999999999999839-95899973
No 265
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=94.66 E-value=0.11 Score=30.99 Aligned_cols=72 Identities=28% Similarity=0.296 Sum_probs=43.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCC-CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCE--EEECCC-H-HHHCCCCEEE
Q ss_conf 98728998898136899999995799-86999965788128988307620544688756--852697-4-8837897899
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKL-GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQ--LCGTSD-Y-SDIAEADVCI 76 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l-~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~--v~~~~d-~-~~l~~aDivV 76 (320)
++.||.|+|+|.+|...+..+. ++ +++..+|+++++.+-. +.. .+.... +..... + +.+++||+||
T Consensus 19 ~pa~vvViG~Gv~G~~A~~~A~--~lGa~V~v~D~~~~~l~~~----~~~---~~~~v~~~~~~~~~~l~~~i~~aDvvI 89 (150)
T pfam01262 19 PPAKVVVIGGGVVGLGAAATAK--GLGAPVTILDVRPERLEQL----DSL---FAEFVETDIFSNCEYLAEAIAEADLVI 89 (150)
T ss_pred CCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEECCHHHHHHH----HHH---CCCCCCCHHHCCHHHHHHHHHHCCEEE
T ss_conf 6777999898789999999998--6799899972999999999----986---476200166537999999974387999
Q ss_pred EECCCC
Q ss_conf 955666
Q gi|254781048|r 77 VTAGIP 82 (320)
Q Consensus 77 itag~~ 82 (320)
-++-.|
T Consensus 90 gavl~p 95 (150)
T pfam01262 90 GTVLIP 95 (150)
T ss_pred EEEECC
T ss_conf 720317
No 266
>PRK13984 putative oxidoreductase; Provisional
Probab=94.65 E-value=0.3 Score=28.19 Aligned_cols=79 Identities=22% Similarity=0.255 Sum_probs=46.9
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEE------------ECCCCCHHHHHHH--HH---HHCCCCCCCCEEEECCC
Q ss_conf 8728998898136899999995799869999------------6578812898830--76---20544688756852697
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLL------------DIVDGMPRGKALD--IA---ESSPVEGFGAQLCGTSD 65 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~------------D~~~~~~~g~~~D--l~---~~~~~~~~~~~v~~~~d 65 (320)
.+||+|||+|--|-++|+-|...+. ++.+| -|-+-|+.-.++| ++ +.=.-...+..+-..-+
T Consensus 283 GKKVAVIGsGPAGLaaA~~Lar~Gh-~VtVFE~~~~~GGlL~yGIP~fRLpk~vv~rei~~i~~~GV~f~~n~~VGkDit 361 (604)
T PRK13984 283 GKKVAIVGSGPAGLSAAYFLATMGY-EVEVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHTNTRVGKDIS 361 (604)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECCCCC
T ss_conf 9989998986899999999998698-689974567789723315872228789999999999972989976857798478
Q ss_pred HHHH-CCCCEEEEECCCC
Q ss_conf 4883-7897899955666
Q gi|254781048|r 66 YSDI-AEADVCIVTAGIP 82 (320)
Q Consensus 66 ~~~l-~~aDivVitag~~ 82 (320)
+++| ++-|-|+++.|..
T Consensus 362 ~eeL~~~yDAVfLa~Ga~ 379 (604)
T PRK13984 362 LEELREKHDAVFVSTGFT 379 (604)
T ss_pred HHHHHHCCCEEEEECCCC
T ss_conf 999970589999953888
No 267
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=94.64 E-value=0.11 Score=31.03 Aligned_cols=114 Identities=20% Similarity=0.283 Sum_probs=64.8
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCC--EEEEEECCCCCHHHHH-HHHHHHCCCCC-CCCEEEECCCHHHHCCCCEEE
Q ss_conf 9987289988981368999999957998--6999965788128988-30762054468-875685269748837897899
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLG--DVVLLDIVDGMPRGKA-LDIAESSPVEG-FGAQLCGTSDYSDIAEADVCI 76 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~--ei~L~D~~~~~~~g~~-~Dl~~~~~~~~-~~~~v~~~~d~~~l~~aDivV 76 (320)
++.-||.+.|||.-|-.++.++...++. ++.++|+.--..++.. +++++--.... ..... +.+ -..+.++|+.+
T Consensus 197 l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~-~~~-~~~~~~adv~i 274 (432)
T COG0281 197 LKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGE-RTL-DLALAGADVLI 274 (432)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCC-CCC-CCCCCCCCEEE
T ss_conf 2203899967758899999999982898445899816763458864344214678877765145-551-12136898899
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCH-HHHHHHHHHC
Q ss_conf 955666676557467899889999999976541266740887148420-7899998844
Q gi|254781048|r 77 VTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLD-AMVWALQKFS 134 (320)
Q Consensus 77 itag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvD-v~~~~~~~~s 134 (320)
=+.|. |- +. .++.+. -+++.+++-.+||.- ++-..+.+.+
T Consensus 275 G~S~~----G~-----~t------~e~V~~---Ma~~PiIfalaNP~pEi~Pe~a~~~~ 315 (432)
T COG0281 275 GVSGV----GA-----FT------EEMVKE---MAKHPIIFALANPTPEITPEDAKEWG 315 (432)
T ss_pred ECCCC----CC-----CC------HHHHHH---HCCCCEEEECCCCCCCCCHHHHHHCC
T ss_conf 76778----87-----69------999997---56498787548997326999996458
No 268
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.63 E-value=0.39 Score=27.43 Aligned_cols=123 Identities=18% Similarity=0.245 Sum_probs=67.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCC-CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEE-CCCHHHHCCCCEEEEECCC
Q ss_conf 728998898136899999995799-86999965788128988307620544688756852-6974883789789995566
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKL-GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCG-TSDYSDIAEADVCIVTAGI 81 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l-~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~-~~d~~~l~~aDivVitag~ 81 (320)
+||.|+|.|.-|.+++-.++.++- ..+..+|..+....-.. +.. ...... .-+.+.+.++|+||...|+
T Consensus 8 KkvlV~GlG~sG~s~a~~L~~~~~~~~v~~~D~~~~~~~~~~--l~~-------~~~~~~g~~~~~~l~~~d~vV~SPGI 78 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKTQPQLTVKVIDTRETPPGQEQ--LPE-------DVELHSGGWNQDWLAEADLVVTNPGI 78 (438)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH--HHC-------CCEEEECCCCHHHHCCCCEEEECCCC
T ss_conf 749999067858999999996699846999639889368876--206-------97697278896783689999989976
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE--CCCCHH---HHHHHHHHCCCCH
Q ss_conf 66765574678998899999999765412667408871--484207---8999988449986
Q gi|254781048|r 82 PRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICI--TNPLDA---MVWALQKFSGLPS 138 (320)
Q Consensus 82 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~~ 138 (320)
|...- .-......+.+|+.++--. .... +..+|-| ||==-+ |...+.+..|++.
T Consensus 79 ~~~~p-~~~~a~~~~i~i~~eiel~-~~~~-~~~iIaVTGTnGKTTTtsli~~iL~~~g~~~ 137 (438)
T PRK04663 79 ALATP-EIQPVLAKGIPVVGDIELF-AWAV-DKPVIAITGSNGKSTVTDLTGVMAKAAGVKV 137 (438)
T ss_pred CCCCH-HHHHHHHCCCCEECHHHHH-HHHC-CCCEEEEECCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 99898-9999998699370388999-7645-8978999489982899999999998289970
No 269
>PRK11579 putative oxidoreductase; Provisional
Probab=94.63 E-value=0.077 Score=32.05 Aligned_cols=65 Identities=17% Similarity=0.239 Sum_probs=37.8
Q ss_pred CCC-CEEEEECCCCHHHHH-HHHHH-HCCCCE-EEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHH-C--CCC
Q ss_conf 998-728998898136899-99999-579986-9999657881289883076205446887568526974883-7--897
Q gi|254781048|r 1 MKS-NKIALIGSGMIGGTL-AHLAV-LKKLGD-VVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDI-A--EAD 73 (320)
Q Consensus 1 mk~-~KV~IIGaG~VG~~~-a~~~~-~~~l~e-i~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l-~--~aD 73 (320)
|.+ -|++|||+|.+|... +-.+. ..+ .| ..+.|.+.+++++ + + + ..++ .+||+++ . +.|
T Consensus 1 M~~~irvgiiG~G~~~~~~h~~~~~~~~~-~~l~av~d~~~~~~~a---~------~-~-~~~~--~~~~~~ll~~~~id 66 (346)
T PRK11579 1 MSDKIRVGLIGYGYASKTFHAPLIAGTPG-LELAAVSSSDETKVKA---D------W-P-TVTV--VSEPKHLFNDPNID 66 (346)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCC-EEEEEEECCCHHHHHC---C------C-C-CCCE--ECCHHHHHCCCCCC
T ss_conf 99887599993629999999999962999-1999997989999950---2------5-8-9953--89999994599999
Q ss_pred EEEEEC
Q ss_conf 899955
Q gi|254781048|r 74 VCIVTA 79 (320)
Q Consensus 74 ivVita 79 (320)
.|+|+.
T Consensus 67 ~V~i~t 72 (346)
T PRK11579 67 LIVIPT 72 (346)
T ss_pred EEEECC
T ss_conf 999979
No 270
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.62 E-value=0.4 Score=27.41 Aligned_cols=116 Identities=18% Similarity=0.219 Sum_probs=70.0
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHH-----------HH
Q ss_conf 9872899889-81368999999957998699996578812898830762054468875685269748-----------83
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYS-----------DI 69 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~-----------~l 69 (320)
+.+.+-|.|+ +.+|..+|..++..+. +++++|+++++++..+.+++..-. .......-.+|++ .+
T Consensus 5 ~gKvalITGas~GIG~aiA~~la~~Ga-~V~l~~r~~~~l~~~~~~i~~~g~--~~~~~~~Dvtd~~~v~~~v~~~~~~~ 81 (238)
T PRK07666 5 QGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARSEENLKAVAKEVEAEGV--KAVIATADVSDYEEVTTAIETLKNGL 81 (238)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--CEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 999899916377899999999998799-899998999999999999995599--27999930799999999999999981
Q ss_pred CCCCEEEEECCCCCCCCC---CH---HHHHHHHHH----HHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 789789995566667655---74---678998899----99999976541266740887148
Q gi|254781048|r 70 AEADVCIVTAGIPRKPSM---SR---DDLLADNLK----AIEKVGAGIRKYAPNSFVICITN 121 (320)
Q Consensus 70 ~~aDivVitag~~~~~g~---~R---~dll~~N~~----i~~~i~~~i~~~~p~~i~ivvtN 121 (320)
-.-|++|-.||....... +. ...+..|.. ..+.+.+.+.+. ..|.+++++-
T Consensus 82 G~iDiLVNNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~lp~M~~~-~~G~IInisS 142 (238)
T PRK07666 82 GSIDILINNAGISKFGKFLELDVAEWEKIIQVNLMGVYYVTRAVLPSMIEQ-QSGDIINISS 142 (238)
T ss_pred CCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECC
T ss_conf 998789984745799982339999999999896299999999999999974-9958999877
No 271
>PRK06139 short chain dehydrogenase; Provisional
Probab=94.61 E-value=0.4 Score=27.40 Aligned_cols=152 Identities=15% Similarity=0.111 Sum_probs=81.6
Q ss_pred CEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCC-CCCCCCEEEECCCHH--------HHCCC
Q ss_conf 728998-89-81368999999957998699996578812898830762054-468875685269748--------83789
Q gi|254781048|r 4 NKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSP-VEGFGAQLCGTSDYS--------DIAEA 72 (320)
Q Consensus 4 ~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~-~~~~~~~v~~~~d~~--------~l~~a 72 (320)
.|+++| |+ +.+|..+|..++..+ +.+++.|+++++++..+.++...-. .......+....+.+ ..-.-
T Consensus 6 gKvvlITGASsGIG~aiA~~~A~~G-a~Vvl~~R~~~~L~~~a~e~~~~G~~~~~v~~DVsd~~~v~~~~~~~~~~~G~I 84 (324)
T PRK06139 6 GAVVVITGASSGIGRATAEAFARRG-ARLVLAARDEEALFEVAEECRALGAEVLVVPTDVTHADQVQALATQAASFLGRI 84 (324)
T ss_pred CCEEEEECHHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9779993825499999999999879-989999899999999999999549948999766788578999999999974998
Q ss_pred CEEEEECCCCCCC--CCCHH----HHHHHHH----HHHHHHHHHHHHCCCCCCEEEECCCC------HHHHHHHHHHCCC
Q ss_conf 7899955666676--55746----7899889----99999997654126674088714842------0789999884499
Q gi|254781048|r 73 DVCIVTAGIPRKP--SMSRD----DLLADNL----KAIEKVGAGIRKYAPNSFVICITNPL------DAMVWALQKFSGL 136 (320)
Q Consensus 73 DivVitag~~~~~--g~~R~----dll~~N~----~i~~~i~~~i~~~~p~~i~ivvtNPv------Dv~~~~~~~~sg~ 136 (320)
|++|..||..... .+... ..++.|. ...+...+.+++.+ .|.+|+++-=. ..-.|-+.|+
T Consensus 85 DiLVNNAGi~~~g~~~e~~~e~~~~vi~vNl~G~~~~~~aalp~M~~~g-~G~IINisS~ag~~~~P~~saY~ASK~--- 160 (324)
T PRK06139 85 DVWFNNVGVGAVGRFEETPLEAHEQVIQTNLIGYLRDAHAALPIFKAQG-HGIFINMISLGGFAAQPYAAAYSASKF--- 160 (324)
T ss_pred CEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEECCHHHHCCCCCCCHHHHHHH---
T ss_conf 7886457557777535599999999999986999999999999998659-918999736324136999841989999---
Q ss_pred CHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 86561100052568999999999719873355
Q gi|254781048|r 137 PSHMVVGMAGILDSARFRYFLAQEFGVSVESV 168 (320)
Q Consensus 137 ~~~rViG~Gt~LDs~R~~~~ia~~l~v~~~~V 168 (320)
=+.|+ -++.|. +|+++-||....|
T Consensus 161 ---Av~gf---tesLr~--EL~~~~gI~Vt~V 184 (324)
T PRK06139 161 ---GLRGF---SEALRA--ELTDFPDIHVCDV 184 (324)
T ss_pred ---HHHHH---HHHHHH--HHCCCCCCEEEEE
T ss_conf ---99999---999999--8379989189998
No 272
>PRK06153 hypothetical protein; Provisional
Probab=94.61 E-value=0.091 Score=31.57 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=27.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 987289988981368999999957998699996578
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
+..||+|||.|..|+-+.-+++--++.||.|+|-++
T Consensus 175 ~~~~IAIIGLGGTGsYILD~vAKTPV~EIhLFDgD~ 210 (393)
T PRK06153 175 EGEKVAIIGLGGTGAYILDLVAKTPVAEIHLFDGDD 210 (393)
T ss_pred CCCEEEEEECCCCCHHHHHHHHCCCHHHEECCCCCH
T ss_conf 477599995587512222242146265243025521
No 273
>PRK12829 short chain dehydrogenase; Provisional
Probab=94.54 E-value=0.41 Score=27.30 Aligned_cols=113 Identities=18% Similarity=0.205 Sum_probs=68.3
Q ss_pred CEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHH-----------HHC
Q ss_conf 728998-89-81368999999957998699996578812898830762054468875685269748-----------837
Q gi|254781048|r 4 NKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYS-----------DIA 70 (320)
Q Consensus 4 ~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~-----------~l~ 70 (320)
.|+++| |+ +.+|..+|..++..+ +++++.|++++.++..+.++...-. .. ...-.+|.+ .+-
T Consensus 11 GKvalVTGgs~GIG~aiA~~la~~G-a~V~i~~r~~~~~~~~~~~~~~~~~-~~---~~~Dvt~~~~v~~~v~~~~~~~G 85 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAG-ARVHVCDVSEAALAATAARLPGAKV-TA---TVADVADPAQVERVFDTAVERFG 85 (264)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCCCE-EE---EEEECCCHHHHHHHHHHHHHHCC
T ss_conf 9979994737689999999999879-9899997998999999997479975-99---99628999999999999999739
Q ss_pred CCCEEEEECCCC--CCCCC--CHH---HHHHHHHH----HHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 897899955666--67655--746---78998899----99999976541266740887148
Q gi|254781048|r 71 EADVCIVTAGIP--RKPSM--SRD---DLLADNLK----AIEKVGAGIRKYAPNSFVICITN 121 (320)
Q Consensus 71 ~aDivVitag~~--~~~g~--~R~---dll~~N~~----i~~~i~~~i~~~~p~~i~ivvtN 121 (320)
.-|++|-.||.. ..+-. +.. ..+..|.. ..+...+.+++....+.+++++-
T Consensus 86 ~iDiLVNNAGi~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~~~G~~IinisS 147 (264)
T PRK12829 86 GLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLRASGHGGVIIALSS 147 (264)
T ss_pred CCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 99899989989999998023999999999999848789999999999987399808999802
No 274
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF; InterPro: IPR012731 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the more widely distributed clade of ThiF proteins as found in E. coli..
Probab=94.53 E-value=0.043 Score=33.66 Aligned_cols=142 Identities=18% Similarity=0.278 Sum_probs=91.9
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 99872899889813689999999579986999965788128988307620544688756852697488378978999556
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
++..+|-|||+|..|++.+..|+--++..|.++|.|.- |++ +...-+. |.+ +||
T Consensus 19 L~~s~VLiiGaGgLGs~~~~~LA~AGVG~i~i~D~D~V-------~~S------NLqRQ~L----f~e---~Dv------ 72 (210)
T TIGR02356 19 LLASHVLIIGAGGLGSPAALYLAAAGVGTITIVDDDHV-------DLS------NLQRQIL----FAE---EDV------ 72 (210)
T ss_pred HHHCCEEEEEECHHHHHHHHHHHHCCCCEEEEEECCEE-------CHH------HCHHHHH----HCH---HHH------
T ss_conf 86086599972614568999998288837899851677-------010------1205543----032---442------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 66676557467899889999999976541266740887148420789999884499865611000525689999999997
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQE 160 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~ 160 (320)
..|.+-+...++++++-+|+=.+=.+.--+|-- .+-.....++|.=||=- + |+...|++|.+.
T Consensus 73 -------------~~~~pK~e~aa~~l~~LN~~i~v~a~~~~vt~~-~~~~~i~~~DPdlVlDc--~-DNf~tryliNda 135 (210)
T TIGR02356 73 -------------GTLRPKVEAAAERLRELNSDIRVTALKERVTAE-NLELLIENVDPDLVLDC--T-DNFATRYLINDA 135 (210)
T ss_pred -------------HCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHH-HHHHHHHCCCCCEEEEC--C-CCHHHHHHHHHH
T ss_conf -------------013158999999998538896899854202779-99999623899689615--6-687788999999
Q ss_pred CCCC-CCCCEEEEECCCCCEEEEECC
Q ss_conf 1987-335505675078852465102
Q gi|254781048|r 161 FGVS-VESVTALVLGSHGDSMVPMLR 185 (320)
Q Consensus 161 l~v~-~~~V~~~ViGeHGds~vp~~S 185 (320)
-... ..=|+|-|+|-+|..++-..+
T Consensus 136 C~~~~~PlI~aavvG~~G~~~~f~~~ 161 (210)
T TIGR02356 136 CQALGIPLISAAVVGFEGQVMVFDPG 161 (210)
T ss_pred HHHHCCCEEEEEEEEECCEEEEEECC
T ss_conf 99847986999887635778998468
No 275
>PRK07890 short chain dehydrogenase; Provisional
Probab=94.49 E-value=0.42 Score=27.22 Aligned_cols=117 Identities=20% Similarity=0.215 Sum_probs=67.6
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCC-CCCCCCEEEECCC--------HHHHCC
Q ss_conf 9872899889-81368999999957998699996578812898830762054-4688756852697--------488378
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSP-VEGFGAQLCGTSD--------YSDIAE 71 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~-~~~~~~~v~~~~d--------~~~l~~ 71 (320)
+.+++-|.|+ +.+|..+|..++..+ +++++.|+++++++..+.++...-. .......+....+ .+.+-.
T Consensus 4 ~gK~alVTG~s~GIG~aia~~la~~G-a~V~i~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~v~~~~~~fG~ 82 (258)
T PRK07890 4 KDKVVVVSGVGPGLGTTLAVRAAREG-ADVVLAARTAERLDEVAKQIDDLGRRALAVVTDITDEAQVANLVDAALERFGR 82 (258)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99889996856589999999999879-98999979899999999999964995899981699999999999999998499
Q ss_pred CCEEEEECCC-CC-CCC--CCHHH---HHHHHH----HHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 9789995566-66-765--57467---899889----999999976541266740887148
Q gi|254781048|r 72 ADVCIVTAGI-PR-KPS--MSRDD---LLADNL----KAIEKVGAGIRKYAPNSFVICITN 121 (320)
Q Consensus 72 aDivVitag~-~~-~~g--~~R~d---ll~~N~----~i~~~i~~~i~~~~p~~i~ivvtN 121 (320)
-|++|..||. +. .|= .+..+ .++.|. ...+...+.+++. +|-+++++-
T Consensus 83 iDiLVnnAg~~~~~~~~~~~~~e~~~~~~~~nl~~~~~~~k~~~p~m~~~--~G~IVnisS 141 (258)
T PRK07890 83 VDVLVNNAFRVPSMKPLAGADFDHWRDVIETNVLGTLRLTQAFTPALAES--GGSVVMINS 141 (258)
T ss_pred CCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCEEEEEEC
T ss_conf 98999868667899980029999999999987599999999889999976--985999825
No 276
>PRK08945 short chain dehydrogenase; Provisional
Probab=94.46 E-value=0.43 Score=27.18 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=69.9
Q ss_pred CCCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEE----ECCCHH--------
Q ss_conf 99872899889-81368999999957998699996578812898830762054468875685----269748--------
Q gi|254781048|r 1 MKSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLC----GTSDYS-------- 67 (320)
Q Consensus 1 mk~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~----~~~d~~-------- 67 (320)
|+.+.+-|.|+ +.+|..+|..++..+. +++++++++++++..+.+++..... ...+. ...+.+
T Consensus 11 L~gK~~lITGas~GIG~aiA~~la~~Ga-~Vil~~r~~~~l~~~~~el~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~ 86 (245)
T PRK08945 11 LKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGP---QPAIIPLDLLGATEQNYQDLADT 86 (245)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCC---CEEEEEEECCCCCHHHHHHHHHH
T ss_conf 8979899948861899999999998799-8999969889999999999974798---44899944675999999999999
Q ss_pred ---HHCCCCEEEEECCC--CCCCCC--CHH---HHHHHHHH----HHHHHHHHHHHCCCCCCEEEECC
Q ss_conf ---83789789995566--667655--746---78998899----99999976541266740887148
Q gi|254781048|r 68 ---DIAEADVCIVTAGI--PRKPSM--SRD---DLLADNLK----AIEKVGAGIRKYAPNSFVICITN 121 (320)
Q Consensus 68 ---~l~~aDivVitag~--~~~~g~--~R~---dll~~N~~----i~~~i~~~i~~~~p~~i~ivvtN 121 (320)
....-|++|..||. +..|-. +.. ..++.|.. +.+.+.+.+++. ..|-++.++-
T Consensus 87 i~~~~g~iD~lVnNAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~-~~G~Ii~isS 153 (245)
T PRK08945 87 IEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKS-PAASLVFTSS 153 (245)
T ss_pred HHHHHCCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECC
T ss_conf 999809987999888755789882669999999987567599999999999999877-9978999786
No 277
>PRK06847 hypothetical protein; Provisional
Probab=94.44 E-value=0.085 Score=31.75 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=29.4
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 872899889813689999999579986999965788
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDG 38 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~ 38 (320)
.+||.|||+|-+|.++|+.|...++ ++.+|+..++
T Consensus 4 ~kkV~IVGaG~aGL~lA~~L~~~Gi-~v~V~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGMSAAIALRKAGI-SVDLVEIDPE 38 (375)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCC
T ss_conf 9879999966899999999996799-9999908999
No 278
>PRK11728 hypothetical protein; Provisional
Probab=94.43 E-value=0.44 Score=27.13 Aligned_cols=95 Identities=18% Similarity=0.265 Sum_probs=57.8
Q ss_pred EEEEECCCCHHHHHHHHHHHC-CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCCC
Q ss_conf 289988981368999999957-9986999965788128988307620544688756852697488378978999556666
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLK-KLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIPR 83 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~-~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~~ 83 (320)
-|.|||+|-||.++|+-+... .-.+++++|+..+.+. |++ +++.-+ |-+|...
T Consensus 4 DvvIIGgGIvG~siA~~Ls~~~~~~~V~vlEke~~~g~-------~~S---~rNSgv----------------iHaG~~y 57 (400)
T PRK11728 4 DFVIIGGGIVGLSTAMQLQDRYPGARIALLEKESGPAR-------HQT---GHNSGV----------------IHAGVYY 57 (400)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC-------CCC---CCCHHH----------------CCCCCCC
T ss_conf 09999967999999999995599983999968999756-------335---324232----------------1564358
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCCCEEEECCCCHH
Q ss_conf 7655746789988999999997654-12667408871484207
Q gi|254781048|r 84 KPSMSRDDLLADNLKAIEKVGAGIR-KYAPNSFVICITNPLDA 125 (320)
Q Consensus 84 ~~g~~R~dll~~N~~i~~~i~~~i~-~~~p~~i~ivvtNPvDv 125 (320)
+|+.-+..+...-.++++++.+... .+-..|.+++++|+-+.
T Consensus 58 ~p~slka~l~~~g~~l~~~~~~~~~i~~~~~GkliVA~~~~e~ 100 (400)
T PRK11728 58 TPGSLKARFCRRGNEATKAFCDQHGIPYEVCGKLLVATSELEL 100 (400)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHH
T ss_conf 9999999999999999999999859992116869997799999
No 279
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=94.35 E-value=0.43 Score=27.20 Aligned_cols=191 Identities=15% Similarity=0.229 Sum_probs=87.6
Q ss_pred CEEEEEC-CCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHH----C--CCCEEE
Q ss_conf 7289988-98136899999995799869999657881289883076205446887568526974883----7--897899
Q gi|254781048|r 4 NKIALIG-SGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDI----A--EADVCI 76 (320)
Q Consensus 4 ~KV~IIG-aG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l----~--~aDivV 76 (320)
+||-|.| +|.+|++++..++.++-..+.++|.... .+....+........+.....-..|.+++ + ..|+|+
T Consensus 2 KkILVTGg~GFIGs~Lv~~Ll~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~~pD~Vi 79 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTY--AGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEYQPDCVM 79 (355)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCC--CCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEEE
T ss_conf 969993787579999999999769988999828987--652544445412787169980058899999999861998899
Q ss_pred EECCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHC------CCCCC--EEEEC-CCC--H--HHHHHHHHHCCCCHHHH
Q ss_conf 955666676--5574678998899999999765412------66740--88714-842--0--78999988449986561
Q gi|254781048|r 77 VTAGIPRKP--SMSRDDLLADNLKAIEKVGAGIRKY------APNSF--VICIT-NPL--D--AMVWALQKFSGLPSHMV 141 (320)
Q Consensus 77 itag~~~~~--g~~R~dll~~N~~i~~~i~~~i~~~------~p~~i--~ivvt-NPv--D--v~~~~~~~~sg~~~~rV 141 (320)
-.|+..... -..-.+.+..|......+.+..+.+ ...+. ++.+| ..+ | .....+.+.+-+.|.-.
T Consensus 80 HlAa~~~~~~s~~~p~~~~~~N~~gt~~lleaar~~~~~l~~~~~~~~~~~~~SS~~vYG~~~~~~~~~~E~~~~~P~s~ 159 (355)
T PRK10217 80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSP 159 (355)
T ss_pred EECCCCCHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 94242211012119677543030757899999999775443303661488865542003677788887677888899988
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCCCE-EEEECCCC--CEEEEECCCCCCCCCHHHHH
Q ss_conf 1000525689999999997198733550-56750788--52465102354477015543
Q gi|254781048|r 142 VGMAGILDSARFRYFLAQEFGVSVESVT-ALVLGSHG--DSMVPMLRYATVSGIPVSDL 197 (320)
Q Consensus 142 iG~Gt~LDs~R~~~~ia~~l~v~~~~V~-~~ViGeHG--ds~vp~~S~~~v~g~p~~~~ 197 (320)
-|. +=+..-++-...++..|++..-+. .-+.|.+. +..+|.|=.....|.|+.-+
T Consensus 160 Yg~-sK~~~E~l~~~~~~~~gl~~~i~R~~nvYGP~~~~~~~i~~~i~~~~~g~~i~i~ 217 (355)
T PRK10217 160 YSA-SKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVY 217 (355)
T ss_pred HHH-HHHHHHHHHHHHHHHCCCCEEEECCCCEECCCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 899-9876655435555415887697235755791999840499999999749988627
No 280
>PRK06436 glycerate dehydrogenase; Provisional
Probab=94.33 E-value=0.46 Score=26.99 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=17.6
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 9872899889813689999999579986999965
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDI 35 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~ 35 (320)
..++++|||.|++|+.+|-.+.--+ .++..+|+
T Consensus 121 ~gktvGIiG~G~IG~~vA~~~~afg-~~V~~~~r 153 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAKAFG-MNIYAYTR 153 (303)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEECC
T ss_conf 1888999897656999999999779-88999898
No 281
>PRK06198 short chain dehydrogenase; Provisional
Probab=94.33 E-value=0.46 Score=26.99 Aligned_cols=113 Identities=19% Similarity=0.274 Sum_probs=71.7
Q ss_pred CEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEE--ECCCHHH-----------
Q ss_conf 728998-89-81368999999957998699996578812898830762054468875685--2697488-----------
Q gi|254781048|r 4 NKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLC--GTSDYSD----------- 68 (320)
Q Consensus 4 ~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~--~~~d~~~----------- 68 (320)
.|+++| |+ +.+|..+|..++..+..-++++++++++++..+.+++..- ...... -..+.++
T Consensus 6 gK~alVTGas~GIG~aiA~~la~~Ga~vv~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (268)
T PRK06198 6 GKIALVTGGTQGLGAAIARLFAERGAAGLVICGRSAEKGEAKAAELEALG----AKAVFVQADLAKVEDCRAVVAAADEA 81 (268)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCC----CCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 98899958577899999999998799389996298889999999999549----96799982689999999999999998
Q ss_pred HCCCCEEEEECCCCCCCC---CCHH---HHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 378978999556666765---5746---78998899----9999997654126674088714
Q gi|254781048|r 69 IAEADVCIVTAGIPRKPS---MSRD---DLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 69 l~~aDivVitag~~~~~g---~~R~---dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
.-.-|++|..||...... ++.. ..+..|.. ..+...+.+.+....|-+++++
T Consensus 82 fG~iDiLVNnAG~~~~~~~~~~~~e~w~~~~~vNl~~~~~~~~~~~~~m~~~~~~G~IVnis 143 (268)
T PRK06198 82 FGRLDALVNAAGLTDRGTILDTSPELFDRMFAVNVRAPFFLMQEAIKLMRRRRAEGTIVNIG 143 (268)
T ss_pred HCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 39998999899789999826599999999999872699999999999999759992799991
No 282
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=94.32 E-value=0.38 Score=27.55 Aligned_cols=71 Identities=25% Similarity=0.271 Sum_probs=43.8
Q ss_pred CEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHH-HHHHHHHHCCCCCCCCEEEE-CCCHHHHCCCCEEEEECC
Q ss_conf 72899889-8136899999995799869999657881289-88307620544688756852-697488378978999556
Q gi|254781048|r 4 NKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRG-KALDIAESSPVEGFGAQLCG-TSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 4 ~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g-~~~Dl~~~~~~~~~~~~v~~-~~d~~~l~~aDivVitag 80 (320)
-||+|||| |++|+.++.-+..++.. +.-+=+++.|... +..-+.+. .++. +.--+++++-|.||-+.|
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHe-VTAivRn~~K~~~~~~~~i~q~--------Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHE-VTAIVRNASKLAARQGVTILQK--------DIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCE-EEEEEECHHHCCCCCCCEEECC--------CCCCHHHHHHHHCCCCEEEEECC
T ss_conf 90789953745679999999867980-4899807676652235302000--------22274566766358766997215
Q ss_pred CCC
Q ss_conf 666
Q gi|254781048|r 81 IPR 83 (320)
Q Consensus 81 ~~~ 83 (320)
.+.
T Consensus 72 ~~~ 74 (211)
T COG2910 72 AGA 74 (211)
T ss_pred CCC
T ss_conf 788
No 283
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=94.32 E-value=0.46 Score=26.98 Aligned_cols=112 Identities=20% Similarity=0.209 Sum_probs=62.8
Q ss_pred CEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEE--ECCCHHH-----------
Q ss_conf 728998-89-81368999999957998699996578812898830762054468875685--2697488-----------
Q gi|254781048|r 4 NKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLC--GTSDYSD----------- 68 (320)
Q Consensus 4 ~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~--~~~d~~~----------- 68 (320)
+|+++| |+ +.+|..+|..++..+ +.+++.|++.++.......+... ........ -..|.++
T Consensus 2 ~KvalITGas~GIG~a~a~~la~~G-~~Vv~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~d~~~~~~~v~~~~~~ 77 (245)
T PRK12824 2 KKIALVTGAKRGIGSAIARELLADG-YRVIATYFGNYDAAKDWFEEYGF---TEDQVRLKSLDVTDTEECQEALARIEEE 77 (245)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCHHHHHHHHHHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 8599994788889999999999879-98999958807789999998740---4993899991389999999999999997
Q ss_pred HCCCCEEEEECCCCCCCCC---CHH---HHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 3789789995566667655---746---78998899----9999997654126674088714
Q gi|254781048|r 69 IAEADVCIVTAGIPRKPSM---SRD---DLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 69 l~~aDivVitag~~~~~g~---~R~---dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
.-.-|++|..||..+.... +.. ..+..|.. +.+...+.+++... |-++.++
T Consensus 78 ~g~iDiLVnnAG~~~~~~~~~~~~e~w~~~~~vNl~~~f~~~~~~~~~m~~~~~-G~IVnis 138 (245)
T PRK12824 78 EGPVDILVNNAGITRDSGFKRMSHQEWNDVINTNLNSVFNVTQPLFPAMCEQGY-GRIINIS 138 (245)
T ss_pred CCCCCEEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEC
T ss_conf 499989998988899999023999999999999734159999999999998399-5599974
No 284
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=94.31 E-value=0.46 Score=26.97 Aligned_cols=111 Identities=21% Similarity=0.296 Sum_probs=71.9
Q ss_pred CEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-----------HHHC
Q ss_conf 728998-89-8136899999995799869999657881289883076205446887568526974-----------8837
Q gi|254781048|r 4 NKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-----------SDIA 70 (320)
Q Consensus 4 ~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-----------~~l~ 70 (320)
.||.+| || ..+|.++|..+...+. .++|..+.+++++..+..+.+ ....+....+ .|+ +...
T Consensus 6 ~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~drL~~la~~~~~-~~~~~~~~DV---tD~~~~~~~i~~~~~~~g 80 (246)
T COG4221 6 GKVALITGASSGIGEATARALAEAGA-KVVLAARREERLEALADEIGA-GAALALALDV---TDRAAVEAAIEALPEEFG 80 (246)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHCC-CCEEEEEECC---CCHHHHHHHHHHHHHHHC
T ss_conf 86899946865688999999997899-699986368899999986256-7437896136---788999999999997517
Q ss_pred CCCEEEEECCCCCCCCCC------HHHHHHHHHHHH----HHHHHHHHHCCCCCCEEEEC
Q ss_conf 897899955666676557------467899889999----99997654126674088714
Q gi|254781048|r 71 EADVCIVTAGIPRKPSMS------RDDLLADNLKAI----EKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 71 ~aDivVitag~~~~~g~~------R~dll~~N~~i~----~~i~~~i~~~~p~~i~ivvt 120 (320)
.-|++|..||..+..... -..++..|.+=+ +.+.|.+.+.. .|.+++++
T Consensus 81 ~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~-~G~IiN~~ 139 (246)
T COG4221 81 RIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERK-SGHIINLG 139 (246)
T ss_pred CCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEC
T ss_conf 605899668777687035489999999999888999999988666888647-96399953
No 285
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase; InterPro: IPR005676 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor. This entry represents the subgroup of aspartate dehydrogenases found primarily in organisms lacking peptidoglycan. In addition to its role in aspartate metabolism, the enzyme from Sulfolobus solfataricus has been shown recently to exhibit RNase activity, suggesting that these enzymes may perform additional cellular functions .; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0009086 methionine biosynthetic process, 0009088 threonine biosynthetic process.
Probab=94.31 E-value=0.35 Score=27.74 Aligned_cols=224 Identities=20% Similarity=0.271 Sum_probs=111.5
Q ss_pred EEEEECC-CCHHHHHHHHHHHCC-C---CEEEEEECCCCCHHHHHHHH---HHH-CCCCCCCCEEEECC-C--HHHHCCC
Q ss_conf 2899889-813689999999579-9---86999965788128988307---620-54468875685269-7--4883789
Q gi|254781048|r 5 KIALIGS-GMIGGTLAHLAVLKK-L---GDVVLLDIVDGMPRGKALDI---AES-SPVEGFGAQLCGTS-D--YSDIAEA 72 (320)
Q Consensus 5 KV~IIGa-G~VG~~~a~~~~~~~-l---~ei~L~D~~~~~~~g~~~Dl---~~~-~~~~~~~~~v~~~~-d--~~~l~~a 72 (320)
||+++|| |.||+.+..+|.... - ++++==+..-.|.-|++.+- .++ ++-.-.+..+...+ + +++-+|.
T Consensus 2 ~VavLGaTG~VGq~f~~lL~~HPr~Fe~~~v~AS~~saGk~Yge~~~W~~~~~g~~Pe~~~dl~i~~~~p~ri~~d~~dV 81 (358)
T TIGR00978 2 RVAVLGATGLVGQKFVKLLEKHPRYFELAKVVASERSAGKRYGEVVKWREILSGDIPEEVRDLEIVETEPVRIAEDHKDV 81 (358)
T ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCHHHCCCEEECCCCCEEEECCCCC
T ss_conf 68997065546899999975269812288988368655767445430121236858432347654134743356617982
Q ss_pred CEEEEECCCCCCC-------------------CCCHHH------HHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHH
Q ss_conf 7899955666676-------------------557467------899889999999976541266740887148420789
Q gi|254781048|r 73 DVCIVTAGIPRKP-------------------SMSRDD------LLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMV 127 (320)
Q Consensus 73 DivVitag~~~~~-------------------g~~R~d------ll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~ 127 (320)
|||.-+ .|..- .--|+| .-+.|..-+.-+-.|=.+-+.+| ++||||.=.
T Consensus 82 D~vfSA--Lp~~~A~~~E~~la~~G~~VfSNAs~~RmdpdVPli~PEVN~~hL~l~~~Q~~RrgW~G--~ivtNPNC~-- 155 (358)
T TIGR00978 82 DIVFSA--LPSEVAEEVEPKLAEEGIIVFSNASAHRMDPDVPLIVPEVNSDHLELLKVQKERRGWKG--FIVTNPNCT-- 155 (358)
T ss_pred EEEEEC--CCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCCCCCC--EEEECCHHH--
T ss_conf 699814--99799999999998569889876847788888677833356147999985400168861--799576167--
Q ss_pred HHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHC-CC-CCH
Q ss_conf 9998844998656110005256899999999971987335505675078852465102354477015543001-58-787
Q gi|254781048|r 128 WALQKFSGLPSHMVVGMAGILDSARFRYFLAQEFGVSVESVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKL-GW-TTQ 205 (320)
Q Consensus 128 ~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~l~v~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~-~~-~~~ 205 (320)
++|+.-.|+=.| +.+++ +.|+...+ =.-|-|-..|+|-.+++.+ .. +..
T Consensus 156 -------------t~~lTl~LkPl~------d~~~~--~~V~v~Tm--------QAvSGAGY~GVp~~~I~dN~iP~I~G 206 (358)
T TIGR00978 156 -------------TAGLTLALKPLI------DAFGI--KKVIVTTM--------QAVSGAGYPGVPSMDILDNVIPHIGG 206 (358)
T ss_pred -------------HHHHHHHHHHHH------HCCCC--CEEEEEEE--------CCHHCCCCCCCCHHHHHCCCCCCCCC
T ss_conf -------------887761013464------30584--56999872--------00014888887545553361655063
Q ss_pred HHHHHHHHHHHCCHHHHHHHH-CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCEE
Q ss_conf 679999845510158888751-5765432203232344554528897499999997364475634788769997872288
Q gi|254781048|r 206 EKIDQIVKRTREGGAEIVGLL-RSGSAYYAPASSAIAIAESYLKNKKNLLPCAAHLSGQYGVEGFYVGVPVVIGHKGVEK 284 (320)
Q Consensus 206 ~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a~a~~~ii~aIl~~~~~v~~~s~~~~g~yg~~~v~~s~P~vig~~Gi~~ 284 (320)
|+ +++..+.+ |+. || .++.++.|..+- ++-.+.=|||..|--....
T Consensus 207 EE-~KIe~E~~-------KilsGk-------------------l~~g~~~PA~~~------~~at~~RVPV~~GHt~~v~ 253 (358)
T TIGR00978 207 EE-EKIERETL-------KILSGK-------------------LENGKIEPAEFE------VSATTTRVPVLDGHTESVH 253 (358)
T ss_pred HH-HHHHHHHH-------HHHCCC-------------------CCCCEEEEECCE------EEEEEEECCCCCCCEEEEE
T ss_conf 35-89876213-------333440-------------------038846420440------6899874441116469999
Q ss_pred EEC-CCCCHHHHH
Q ss_conf 847-999889999
Q gi|254781048|r 285 IVE-LNLSFDEKD 296 (320)
Q Consensus 285 i~~-l~Ls~~E~~ 296 (320)
+.- -++|.+|-.
T Consensus 254 v~~~~~~d~~EI~ 266 (358)
T TIGR00978 254 VEFDKKFDIEEIR 266 (358)
T ss_pred EEECCCCCHHHHH
T ss_conf 9866877989999
No 286
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=94.30 E-value=0.26 Score=28.64 Aligned_cols=99 Identities=19% Similarity=0.227 Sum_probs=59.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCC--EEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEE-E---------CCC------
Q ss_conf 7289988981368999999957998--699996578812898830762054468875685-2---------697------
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLG--DVVLLDIVDGMPRGKALDIAESSPVEGFGAQLC-G---------TSD------ 65 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~--ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~-~---------~~d------ 65 (320)
.||.|||.|.-|......+...++. +++.+|.+.. +|+++.+ ..++. + .+|
T Consensus 1 akI~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~~-------~L~~~~a----~~ki~iG~~~t~G~GaG~~pe~G~~ 69 (303)
T cd02191 1 AKIAVIGFGGAGGNIVDKFLEYDKEGRSAVAVNTDAQ-------DLLGLEA----ENRVLIGQARTKGLGAGANPELGAE 69 (303)
T ss_pred CCEEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCHH-------HHHCCCC----CCEEECCCCCCCCCCCCCCCHHHHH
T ss_conf 9189998788139999999982999717999957699-------9835999----8289727666688989889458999
Q ss_pred ---------HHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCH
Q ss_conf ---------48837897899955666676557467899889999999976541266740887148420
Q gi|254781048|r 66 ---------YSDIAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLD 124 (320)
Q Consensus 66 ---------~~~l~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvD 124 (320)
.+.++++|+|+++||.--..| . .-++++.++++.... -++-+||-|-.
T Consensus 70 aA~e~~~~I~~~l~~~d~vfi~AGmGGGTG---t----GaaPviA~~Ake~g~----ltvavVt~PF~ 126 (303)
T cd02191 70 AAEEVQEAIDNIPVHVDMVFITAGLGGGTG---T----GGAPVVAEHLKRIGT----LTVAVVTLPFS 126 (303)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCCC---C----CHHHHHHHHHHHCCC----CEEEEEECCHH
T ss_conf 999999999998656998999984189700---4----289999999997599----38999978725
No 287
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.29 E-value=0.47 Score=26.94 Aligned_cols=81 Identities=20% Similarity=0.214 Sum_probs=49.2
Q ss_pred CCEEEEEC---CCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEEE
Q ss_conf 87289988---98136899999995799869999657881289883076205446887568526974-883789789995
Q gi|254781048|r 3 SNKIALIG---SGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIVT 78 (320)
Q Consensus 3 ~~KV~IIG---aG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVit 78 (320)
+.+|..+. .||||+. |=.++.-+++||+|++.... ...++.-+...+...-.+-+++ .++ +++.|+|+++-|
T Consensus 4 ~i~iVLVep~~~gNIG~v-ARaMKNfGl~eL~LV~Pr~~-~~eeA~a~A~gA~dile~A~i~--~tL~eAl~d~~~v~aT 79 (242)
T COG0565 4 NIRIVLVEPSHPGNIGSV-ARAMKNFGLSELRLVNPRAG-LDEEARALAAGARDILENAKIV--DTLEEALADCDLVVAT 79 (242)
T ss_pred CCEEEEECCCCCCCHHHH-HHHHHHCCCCEEEEECCCCC-CCHHHHHHHCCCHHHHCCCEEE--CCHHHHHCCCCEEEEE
T ss_conf 617999758887527999-99998679664899789889-8899999864666665067664--6799996078879980
Q ss_pred CCCCCCCCC
Q ss_conf 566667655
Q gi|254781048|r 79 AGIPRKPSM 87 (320)
Q Consensus 79 ag~~~~~g~ 87 (320)
.+.+|...-
T Consensus 80 tar~r~~~~ 88 (242)
T COG0565 80 TARSRDLLR 88 (242)
T ss_pred CCCCCCCCC
T ss_conf 566676655
No 288
>pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold. This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.
Probab=94.25 E-value=0.15 Score=30.23 Aligned_cols=64 Identities=19% Similarity=0.288 Sum_probs=40.5
Q ss_pred EEEEECCCCHHHHHHHHHH-HCCCCEE-EEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHH---CCCCEEEEEC
Q ss_conf 2899889813689999999-5799869-999657881289883076205446887568526974883---7897899955
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAV-LKKLGDV-VLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDI---AEADVCIVTA 79 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~-~~~l~ei-~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l---~~aDivVita 79 (320)
||+|||+|.+|......+. ...-.++ .++|++.++++..+..+ + ... .++|+++ .+.|.|+|+.
T Consensus 2 ki~iiG~G~~g~~~~~~~~~~~~~~~i~ai~d~~~~~~~~~~~~~-------~--~~~--~~~~~~~l~~~~iD~v~I~t 70 (120)
T pfam01408 2 RVGIVGAGKIGRRHLRALNESQDGAELVGVLDPDPARAEAVAESF-------G--VPA--YSDLEELLADPDVDAVSVAT 70 (120)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH-------C--CCE--ECCHHHHHHCCCCCEEEECC
T ss_conf 899990779999999999855999789999829999999999983-------9--967--88699997377889899908
No 289
>PRK06180 short chain dehydrogenase; Provisional
Probab=94.24 E-value=0.39 Score=27.48 Aligned_cols=113 Identities=22% Similarity=0.206 Sum_probs=65.7
Q ss_pred CCCCEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHH-----------
Q ss_conf 998728998-89-81368999999957998699996578812898830762054468875685269748-----------
Q gi|254781048|r 1 MKSNKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYS----------- 67 (320)
Q Consensus 1 mk~~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~----------- 67 (320)
|.+.|+.+| |+ ..+|..+|..++.++ ..+++.++++++++......... ... ...-.+|.+
T Consensus 1 M~~~KvvlITGassGIG~aiA~~l~~~G-~~Vi~~~R~~~~l~~l~~~~~~~--~~~---~~~Dvtd~~~v~~~v~~~~~ 74 (277)
T PRK06180 1 MASMKTWLITGVSSGFGRALAQAALAAG-HRVVGTVRSAAARRDFEALHPGR--ALA---RVLDVTDFDAIDGVVADAEA 74 (277)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCC--EEE---EEEECCCHHHHHHHHHHHHH
T ss_conf 9999889991787399999999999879-99999989999999999867995--799---99837999999999999999
Q ss_pred HHCCCCEEEEECCCCCCCCC---CHH---HHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 83789789995566667655---746---78998899----9999997654126674088714
Q gi|254781048|r 68 DIAEADVCIVTAGIPRKPSM---SRD---DLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 68 ~l~~aDivVitag~~~~~g~---~R~---dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
.+-.-|++|..||....... +-. ..++.|.. +.+.+.+.+++.. .|.+++++
T Consensus 75 ~~G~iDvLVNNAG~~~~~~~e~~~~~~~~~~~~vN~~g~~~~~~a~lp~m~~~~-~G~Ivnis 136 (277)
T PRK06180 75 TVGPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMIKAVLPGMRARR-RGHIVNIT 136 (277)
T ss_pred HHCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC-CCEEEEEC
T ss_conf 819986999899778888633399999999998853776544200488889658-96577535
No 290
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=94.23 E-value=0.42 Score=27.24 Aligned_cols=79 Identities=20% Similarity=0.176 Sum_probs=44.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC------------CCHHHHHHH--HHHHCC---CCCCCCEEEECCC
Q ss_conf 87289988981368999999957998699996578------------812898830--762054---4688756852697
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD------------GMPRGKALD--IAESSP---VEGFGAQLCGTSD 65 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~------------~~~~g~~~D--l~~~~~---~~~~~~~v~~~~d 65 (320)
.+||+|||+|--|-++|+-|+..+. ++.+||..+ -++.-..+| ++.... -...+..+-..-+
T Consensus 143 gkkVAVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~~~GGll~yGIP~~RLpk~v~~~ei~~l~~~GV~~~~n~~VG~dit 221 (472)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGH-KVTVFERDDRIGGLLRYGIPDFKLEKDVIDRRIELMEGEGIEFRTGVEVGKDIT 221 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECEECCCCCC
T ss_conf 9989998977899999999986697-589972577777546531788555358999999999857978990523187576
Q ss_pred HHHH-CCCCEEEEECCCC
Q ss_conf 4883-7897899955666
Q gi|254781048|r 66 YSDI-AEADVCIVTAGIP 82 (320)
Q Consensus 66 ~~~l-~~aDivVitag~~ 82 (320)
.++| ++-|-|+++.|..
T Consensus 222 ~~~L~~~yDAV~la~Ga~ 239 (472)
T PRK12810 222 AEQLLAEYDAVFLGGGAY 239 (472)
T ss_pred HHHHHCCCCEEEEECCCC
T ss_conf 999850579899903778
No 291
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=94.22 E-value=0.48 Score=26.85 Aligned_cols=43 Identities=23% Similarity=0.360 Sum_probs=30.9
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
Q ss_conf 87289988981368999999957998699996578812898830
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALD 46 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~D 46 (320)
.+||+|+|+|+.|.-++..+...++ +++.+|.+++-.-+++.|
T Consensus 12 ~kkIgIlGgGQLg~Mla~aA~~LG~-~vivld~~~d~PA~~vAd 54 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQRLGV-EVIAVDRYANAPAMQVAH 54 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCCCHHHHCC
T ss_conf 8889998988999999999998799-899984899594467286
No 292
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial; InterPro: IPR012803 Members of this family represent the alpha subunit of the mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (4.2.1.17 from EC) and 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC). Some characterization of these proteins has been done in human (P40939 from SWISSPROT), pig (Q29554 from SWISSPROT) and rat (Q64428 from SWISSPROT). The beta subunit has acetyl-CoA C-acyltransferase (2.3.1.16 from EC) activity.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004300 enoyl-CoA hydratase activity, 0006635 fatty acid beta-oxidation, 0005739 mitochondrion, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=94.14 E-value=0.0026 Score=41.57 Aligned_cols=74 Identities=31% Similarity=0.517 Sum_probs=46.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCC-CHHHHHHH---HHHH------CCCCC--CCCEEEECCCHHHHCC
Q ss_conf 72899889813689999999579986999965788-12898830---7620------54468--8756852697488378
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDG-MPRGKALD---IAES------SPVEG--FGAQLCGTSDYSDIAE 71 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~-~~~g~~~D---l~~~------~~~~~--~~~~v~~~~d~~~l~~ 71 (320)
+.|+|+|||-.|+-+|....-+++ ..+|-|-++. ..+|+-+= |++. ..+.. ...+...+=||+++++
T Consensus 338 k~~avlGAGLMGAGIaqVsvDKG~-~tvlkDat~~gl~RGq~Qv~kgLn~~VKrk~i~~lErd~i~~~L~~~lDY~~f~~ 416 (740)
T TIGR02441 338 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATEAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGFKN 416 (740)
T ss_pred CEEEEECCCCCCCCEEEEEEECCC-EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCC
T ss_conf 237886134002724899981771-4632004467887328889864223334667545446668861565415333001
Q ss_pred CCEEEEE
Q ss_conf 9789995
Q gi|254781048|r 72 ADVCIVT 78 (320)
Q Consensus 72 aDivVit 78 (320)
||+||-+
T Consensus 417 AD~vIEA 423 (740)
T TIGR02441 417 ADVVIEA 423 (740)
T ss_pred CCEEEEE
T ss_conf 7778997
No 293
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.14 E-value=0.34 Score=27.85 Aligned_cols=136 Identities=21% Similarity=0.287 Sum_probs=76.2
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCH-HHHHHH-HHH--HCCCCCCCCEEEECCC-HHHHCCCCEE
Q ss_conf 9987289988981368999999957998699996578812-898830-762--0544688756852697-4883789789
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMP-RGKALD-IAE--SSPVEGFGAQLCGTSD-YSDIAEADVC 75 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~-~g~~~D-l~~--~~~~~~~~~~v~~~~d-~~~l~~aDiv 75 (320)
|....|.|||+|--|+..|+-++..++. +.|+...+.|. .++.-| +.. |+.-+.........+- -++++-.+=+
T Consensus 1 ~~~~~i~VIGaGLAGSEAAwqiA~~Gv~-V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~EMR~lgSl 79 (439)
T COG1206 1 MMQQPINVIGAGLAGSEAAWQIAKRGVP-VILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKAEMRLLGSL 79 (439)
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHCCCC-EEEEECCCCCCCCCCCCCCHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9877258975654451999999876983-799970456689754456524302125546403444457889999972117
Q ss_pred EEEC-CCCCCCC-----CCHHHHHHHHHHHHH------HHHHHHHHCCCCCCEEEECCCC--HHHHHHHHHHCCCC
Q ss_conf 9955-6666765-----574678998899999------9997654126674088714842--07899998844998
Q gi|254781048|r 76 IVTA-GIPRKPS-----MSRDDLLADNLKAIE------KVGAGIRKYAPNSFVICITNPL--DAMVWALQKFSGLP 137 (320)
Q Consensus 76 Vita-g~~~~~g-----~~R~dll~~N~~i~~------~i~~~i~~~~p~~i~ivvtNPv--Dv~~~~~~~~sg~~ 137 (320)
||++ -..|-|. .+|..+.+.-.+.++ -+-+.+...-|+++.+++|.|. |.++.-+.+.+|-+
T Consensus 80 ii~~Ad~~~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vireEvt~iP~dg~~vIATGPLTs~~La~~i~~ltG~d 155 (439)
T COG1206 80 IIEAADKHRVPAGGALAVDRDGFSQAVTEKLENHPLIEVIREEVTEIPPDGITVIATGPLTSDALAEKIKELTGED 155 (439)
T ss_pred HHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 8664154068887604661767789999998539977987110146899885799608989788999999860875
No 294
>pfam10727 Rossmann-like Rossmann-like domain. This family of proteins contain a Rossmann-like domain.
Probab=94.13 E-value=0.32 Score=28.03 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=38.2
Q ss_pred EEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEEC
Q ss_conf 9988981368999999957998699996578812898830762054468875685269748837897899955
Q gi|254781048|r 7 ALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTA 79 (320)
Q Consensus 7 ~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVita 79 (320)
+|||+|+||..++..+...+..=...+.+.+...+--+. +.+ ..+ ....+.++.||+|+||.
T Consensus 1 GiIGaGrvG~~L~~al~~aGh~v~gv~srs~~s~~~a~~-------~~~--~~~--~~~~ev~~~adlv~itv 62 (111)
T pfam10727 1 GIISAGRVGVALGEALERAGHVVHAISAISDASRERAER-------RLD--SPV--LPIPDVIRRAELVVLAV 62 (111)
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHH-------HCC--CCC--CCHHHHHHHCCEEEEEC
T ss_conf 943765779999999997898289998389889999998-------669--976--79589897679999989
No 295
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.10 E-value=0.51 Score=26.69 Aligned_cols=114 Identities=17% Similarity=0.207 Sum_probs=66.1
Q ss_pred CCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-----------HHHC
Q ss_conf 872899889-8136899999995799869999657881289883076205446887568526974-----------8837
Q gi|254781048|r 3 SNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-----------SDIA 70 (320)
Q Consensus 3 ~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-----------~~l~ 70 (320)
.+.+-|.|+ +.+|..++..++..+ +++++.|+++++++.....+.+.-. .......-..+. +...
T Consensus 6 gK~alITGgs~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~l~~~g~--~~~~~~~Dl~~~~~~~~~~~~~~~~~g 82 (253)
T PRK12826 6 GRVALVTGAARGIGRAIAVRFAADG-ADVIVVDICGQAAAATAELVAAAGG--KARAYQVDVRDRAALKALVAAGVERFG 82 (253)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf 9889994897789999999999879-9899998988999999999985099--589999517999999999999999839
Q ss_pred CCCEEEEECCCCCCCC---CCHHH---HHHHHH----HHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 8978999556666765---57467---899889----99999997654126674088714
Q gi|254781048|r 71 EADVCIVTAGIPRKPS---MSRDD---LLADNL----KAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 71 ~aDivVitag~~~~~g---~~R~d---ll~~N~----~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
.-|++|..||...... .+..+ .++.|. .+.+...+.+++.. .|-+|+++
T Consensus 83 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~II~is 141 (253)
T PRK12826 83 RLDILVANAGIFPLTPFAELDDEDWDRVIDVNLTGTFLLTQAALPALKRAG-GGRIVLTS 141 (253)
T ss_pred CCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEE
T ss_conf 987899899889999815599999999999875666433787469999769-97699995
No 296
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=94.09 E-value=0.51 Score=26.68 Aligned_cols=114 Identities=24% Similarity=0.325 Sum_probs=68.7
Q ss_pred CEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH--------HHHCCCC
Q ss_conf 728998-89-8136899999995799869999657881289883076205446887568526974--------8837897
Q gi|254781048|r 4 NKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY--------SDIAEAD 73 (320)
Q Consensus 4 ~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~--------~~l~~aD 73 (320)
.|+++| |+ +.+|..+|..++..+ +++++.|+++++++..+.++..-..+ ....+....+. +.+-.-|
T Consensus 5 gKvalVTGas~GIG~aia~~la~~G-a~V~i~d~~~~~~~~~~~~~g~~~~~--~~~Dvt~~~~v~~~v~~~~~~~G~iD 81 (256)
T PRK07067 5 GKVALLTGAASGIGEAVAQRYLREG-ARVVLADIKPARAALAALEIGPAAVA--VSLDVTRQDSIDRIVAAAVERFGGID 81 (256)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHCCCEEE--EEEECCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9889993767789999999999879-99999979889999999981997599--99848999999999999999819998
Q ss_pred EEEEECCCCC-CC--CCCHH---HHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 8999556666-76--55746---78998899----9999997654126674088714
Q gi|254781048|r 74 VCIVTAGIPR-KP--SMSRD---DLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 74 ivVitag~~~-~~--g~~R~---dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
++|..||... +| .++.. ..+..|.. ..+...+.+.+.+..|-+++++
T Consensus 82 iLVNNAGi~~~~~~~~~~~e~~~~~~~vNl~g~f~~~~~~~~~m~~~~~~G~IVnis 138 (256)
T PRK07067 82 ILVNNAALFDMAPILEISRDVYDRLFAVNVKGLFFLMQAVAQHMVEQGRGGKIINMA 138 (256)
T ss_pred EEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 999899889998813499999999999851778999999999999808995599984
No 297
>KOG1208 consensus
Probab=94.09 E-value=0.51 Score=26.68 Aligned_cols=154 Identities=19% Similarity=0.105 Sum_probs=91.1
Q ss_pred EEE-EECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCC-------------H-HH
Q ss_conf 289-9889-813689999999579986999965788128988307620544688756852697-------------4-88
Q gi|254781048|r 5 KIA-LIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSD-------------Y-SD 68 (320)
Q Consensus 5 KV~-IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d-------------~-~~ 68 (320)
|++ |.|+ ..+|...|..++.++ +++++..++.++++..+.++..-. ...... ...-| + ..
T Consensus 36 ~~~vVTGansGIG~eta~~La~~G-a~Vv~~~R~~~~~~~~~~~i~~~~--~~~~i~-~~~lDLssl~SV~~fa~~~~~~ 111 (314)
T KOG1208 36 KVALVTGATSGIGFETARELALRG-AHVVLACRNEERGEEAKEQIQKGK--ANQKIR-VIQLDLSSLKSVRKFAEEFKKK 111 (314)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCC--CCCCEE-EEECCCCCHHHHHHHHHHHHHC
T ss_conf 779995898843799999999579-989998477788999999997108--776369-9987999999999999999851
Q ss_pred HCCCCEEEEECCCCCCCCCCHHHHHHH----H----HHHHHHHHHHHHHCCCCCCEEEECCCC--H-HHHHHHHHHCC-C
Q ss_conf 378978999556666765574678998----8----999999997654126674088714842--0-78999988449-9
Q gi|254781048|r 69 IAEADVCIVTAGIPRKPSMSRDDLLAD----N----LKAIEKVGAGIRKYAPNSFVICITNPL--D-AMVWALQKFSG-L 136 (320)
Q Consensus 69 l~~aDivVitag~~~~~g~~R~dll~~----N----~~i~~~i~~~i~~~~p~~i~ivvtNPv--D-v~~~~~~~~sg-~ 136 (320)
...-|+.|..||+...|.....|-++. | --+.+.+.+.+++.+|.=|+.+-|-.. + -+-.+-.+..+ |
T Consensus 112 ~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~~~~~~~~~l~~~~~~~~ 191 (314)
T KOG1208 112 EGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILGGGKIDLKDLSGEKAKLY 191 (314)
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCHHHEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHCCCHHHCCC
T ss_conf 78765898655223676545654411300023299999999999998537897679980653467665332362331355
Q ss_pred CHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 865611000525689999999997198
Q gi|254781048|r 137 PSHMVVGMAGILDSARFRYFLAQEFGV 163 (320)
Q Consensus 137 ~~~rViG~Gt~LDs~R~~~~ia~~l~v 163 (320)
...+..+. +-|...-+-..+++++.-
T Consensus 192 ~~~~~Y~~-SKla~~l~~~eL~k~l~~ 217 (314)
T KOG1208 192 SSDAAYAL-SKLANVLLANELAKRLKK 217 (314)
T ss_pred CHHHHHHH-HHHHHHHHHHHHHHHHHC
T ss_conf 50678888-699899999999988554
No 298
>PRK08219 short chain dehydrogenase; Provisional
Probab=94.02 E-value=0.53 Score=26.59 Aligned_cols=112 Identities=17% Similarity=0.199 Sum_probs=63.3
Q ss_pred CCCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCC----HHHHCCCCEE
Q ss_conf 99872899889-813689999999579986999965788128988307620544688756852697----4883789789
Q gi|254781048|r 1 MKSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSD----YSDIAEADVC 75 (320)
Q Consensus 1 mk~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d----~~~l~~aDiv 75 (320)
|..+-+-|.|+ +.+|.++|..++.++ .+++.+++.++++....++. .. .....+....+ ++.+...|++
T Consensus 1 m~mKvalITGas~GIG~aia~~la~~g--~vv~~~r~~~~l~~l~~~~~-~~---~~~~Dlt~~~~i~~~~~~~~~iD~l 74 (226)
T PRK08219 1 MGMPTALITGASRGIGAAIARALARTH--TLLLAGRPSERLDAVAARLG-AT---TWPADLTDPEAIAAAVEPLDRLDVL 74 (226)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHHC-CC---EEEECCCCHHHHHHHHHHCCCCCEE
T ss_conf 978999992846499999999999699--89999898899999999709-93---7860579999999999965998899
Q ss_pred EEECCCCCCCC---CCHH---HHHHHHH----HHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 99556666765---5746---7899889----99999997654126674088714
Q gi|254781048|r 76 IVTAGIPRKPS---MSRD---DLLADNL----KAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 76 Vitag~~~~~g---~~R~---dll~~N~----~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
|..||...... .+.. ..++.|. .+.+.+.+.+++. .|-+++++
T Consensus 75 VnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~l~~~~lp~m~~~--~G~IV~is 127 (226)
T PRK08219 75 VHNAGVAELGPVAESTVDEWRATLDVNVVAPAELTRLLLPALRAA--RGHVVFIN 127 (226)
T ss_pred EECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCEEEEEE
T ss_conf 989968999873769999999999986699999999999999973--98499994
No 299
>KOG0069 consensus
Probab=94.01 E-value=0.23 Score=28.99 Aligned_cols=146 Identities=18% Similarity=0.183 Sum_probs=74.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCC
Q ss_conf 98728998898136899999995799869999657881289883076205446887568526974883789789995566
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGI 81 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~ 81 (320)
..++|+|+|.|.+|+.+|..+.-=+ +.+..+.+.... .-.+.+ +.. . ..+.++-++.+|++|++-
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~~~-~~~~~~------~~~---~--~~d~~~~~~~sD~ivv~~-- 225 (336)
T KOG0069 161 EGKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQLP-PEEAYE------YYA---E--FVDIEELLANSDVIVVNC-- 225 (336)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCCCC-HHHHHH------HCC---C--CCCHHHHHHHCCEEEEEC--
T ss_conf 6777999627478899999635326-625541135776-366887------435---4--367888873288799926--
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHH-HHHHCCCCHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 667655746789988999999997654126674088714842078999-9884499865611000525689999999997
Q gi|254781048|r 82 PRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWA-LQKFSGLPSHMVVGMAGILDSARFRYFLAQE 160 (320)
Q Consensus 82 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~-~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~ 160 (320)
|-.+ +|| .++ | ++....++ +.+++++++ ==.++-.. +.+. ++..|+.|.| | +.
T Consensus 226 pLt~-~T~-~li--N----k~~~~~mk---~g~vlVN~a-RG~iide~~l~ea--L~sG~i~~aG--l----------DV 279 (336)
T KOG0069 226 PLTK-ETR-HLI--N----KKFIEKMK---DGAVLVNTA-RGAIIDEEALVEA--LKSGKIAGAG--L----------DV 279 (336)
T ss_pred CCCH-HHH-HHH--H----HHHHHHCC---CCEEEEECC-CCCCCCHHHHHHH--HHCCCCCCCC--C----------CC
T ss_conf 8977-888-776--0----99998647---976999646-4240259999978--7539853224--6----------54
Q ss_pred CCCCCCCCEEEEECCCCCEEEEECCCCCC
Q ss_conf 19873355056750788524651023544
Q gi|254781048|r 161 FGVSVESVTALVLGSHGDSMVPMLRYATV 189 (320)
Q Consensus 161 l~v~~~~V~~~ViGeHGds~vp~~S~~~v 189 (320)
+...| .++-..+.----.+.|..+.++.
T Consensus 280 f~~EP-~~~~~l~~~dnvv~~PHigs~t~ 307 (336)
T KOG0069 280 FEPEP-PVDHPLLTLDNVVILPHIGSATL 307 (336)
T ss_pred CCCCC-CCCCCHHCCCCEEEECCCCCCCH
T ss_conf 67789-98820102366067231255749
No 300
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.00 E-value=0.54 Score=26.57 Aligned_cols=134 Identities=22% Similarity=0.277 Sum_probs=76.5
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH-HHHHHCCCCCCCCEE-EECCCHHHHCCCCEEEEEC
Q ss_conf 98728998898136899999995799869999657881289883-076205446887568-5269748837897899955
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKAL-DIAESSPVEGFGAQL-CGTSDYSDIAEADVCIVTA 79 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~-Dl~~~~~~~~~~~~v-~~~~d~~~l~~aDivVita 79 (320)
+..||.|+|.|.-|-+++..+...+ .++..+|..+.-...... .+.+ ...+ .+..+.++..++|+||..-
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~~~~~~~~~~~~-------~i~~~~g~~~~~~~~~~d~vV~SP 77 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAPEGLAAQPLLLE-------GIEVELGSHDDEDLAEFDLVVKSP 77 (448)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHCC-CEEEEECCCCCCCCHHHHHHHCC-------CCEEECCCCCHHCCCCCCEEEECC
T ss_conf 5997999926651099999999779-86999838987653234444203-------722313764110013477899899
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE--CCCCHH---HHHHHHHHCCCCH--HHHHHHC
Q ss_conf 6666765574678998899999999765412667408871--484207---8999988449986--5611000
Q gi|254781048|r 80 GIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICI--TNPLDA---MVWALQKFSGLPS--HMVVGMA 145 (320)
Q Consensus 80 g~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~~--~rViG~G 145 (320)
|.|..--+ =........+|+.++--..+.. +.+-++-| ||==-+ |.+.+.+.+|++. .=.||+.
T Consensus 78 Gi~~~~p~-v~~A~~~gi~i~~dieL~~r~~-~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p 148 (448)
T COG0771 78 GIPPTHPL-VEAAKAAGIEIIGDIELFYRLS-GEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTP 148 (448)
T ss_pred CCCCCCHH-HHHHHHCCCCEEEHHHHHHHHC-CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEECCCCCCC
T ss_conf 99998889-9999986993774888898744-89998999799962889999999998559983213516713
No 301
>PRK05866 short chain dehydrogenase; Provisional
Probab=93.97 E-value=0.54 Score=26.53 Aligned_cols=112 Identities=23% Similarity=0.262 Sum_probs=67.1
Q ss_pred EEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHH-----------HCC
Q ss_conf 28998-89-813689999999579986999965788128988307620544688756852697488-----------378
Q gi|254781048|r 5 KIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSD-----------IAE 71 (320)
Q Consensus 5 KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~-----------l~~ 71 (320)
|+++| |+ ..+|..+|..++..+ +.+++.|+++++++..+.++...-.. ......-.+|.++ +-.
T Consensus 41 KvaLITGassGIG~aiA~~la~~G-a~Vvl~~R~~~~l~~~~~~i~~~g~~--~~~~~~Dvtd~~~v~~~v~~~~~~~G~ 117 (290)
T PRK05866 41 KRILLTGASSGIGEAAAEKFARRG-ATVVAVARRKDLLDAVADRITAAGGD--AMAIPCDLSDLDAVDALVADVEERIGG 117 (290)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCCE--EEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 989990813099999999999869-98999989999999999999964990--899977889899999999999998599
Q ss_pred CCEEEEECCCCC-CCCCC---H-HH---HHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 978999556666-76557---4-67---8998899----9999997654126674088714
Q gi|254781048|r 72 ADVCIVTAGIPR-KPSMS---R-DD---LLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 72 aDivVitag~~~-~~g~~---R-~d---ll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
-|++|..||... ++-.+ + .| .+..|.. ..+.+.+.+.+.+ .|.+++++
T Consensus 118 iDiLVNNAG~~~~~~~~~~~~~~~d~~~~~~vN~~g~~~l~~~~lp~M~~~~-~G~IVnis 177 (290)
T PRK05866 118 VDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMIERG-DGHIINVA 177 (290)
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEE
T ss_conf 8889975766678742221577999999999983999999987509999669-96499992
No 302
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=93.97 E-value=0.24 Score=28.81 Aligned_cols=97 Identities=18% Similarity=0.303 Sum_probs=53.0
Q ss_pred CCCEEEEECCCCHHHHHHHHH-H-HCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHH-HC--CCCEEE
Q ss_conf 987289988981368999999-9-579986999965788128988307620544688756852697488-37--897899
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLA-V-LKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSD-IA--EADVCI 76 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~-~-~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~-l~--~aDivV 76 (320)
+.+++.|||+|++|.++++.- . ..+..-...+|+++++.--+..| ..+...++.+. ++ |.|+.+
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~-----------v~V~~~d~le~~v~~~dv~iai 151 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGD-----------VPVYDLDDLEKFVKKNDVEIAI 151 (211)
T ss_pred CCEEEEEECCCHHHHHHHCCCCHHHCCCEEEEEECCCHHHHCCCCCC-----------EEEECHHHHHHHHHHCCCCEEE
T ss_conf 40348999057088898607423326935999961787883752488-----------1455268888898861761899
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHH
Q ss_conf 955666676557467899889999999976541266740887148420789
Q gi|254781048|r 77 VTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMV 127 (320)
Q Consensus 77 itag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~ 127 (320)
+|. |. +. ..++++.+.+.+-+|++=. -|+.+++
T Consensus 152 LtV--Pa-------~~-------AQ~vad~Lv~aGVkGIlNF--tPv~l~~ 184 (211)
T COG2344 152 LTV--PA-------EH-------AQEVADRLVKAGVKGILNF--TPVRLQV 184 (211)
T ss_pred EEC--CH-------HH-------HHHHHHHHHHCCCCEEEEC--CCEEECC
T ss_conf 973--48-------98-------9999999998387358842--6357518
No 303
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=93.92 E-value=0.11 Score=30.92 Aligned_cols=33 Identities=30% Similarity=0.409 Sum_probs=28.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 7289988981368999999957998699996578
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
.+|.|||+|-||.++||-+..++. ++.++|+.+
T Consensus 2 ~~V~VIGaGivGlstA~~La~~G~-~VtviDr~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CCEEEECCHHHHHHHHHHHHHCCC-CEEEEECCC
T ss_conf 959998983999999999997899-189996989
No 304
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=93.92 E-value=0.13 Score=30.50 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=31.4
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 99872899889813689999999579986999965788
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDG 38 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~ 38 (320)
+++.+|+|||+|-+|.++||-|...+. ++.++|..+.
T Consensus 2 ~~~~~vvIIGgGi~Gls~A~~La~~G~-~V~vie~~~~ 38 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEA 38 (387)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCC
T ss_conf 976439998986999999999997699-1999917988
No 305
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=93.92 E-value=0.096 Score=31.41 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=27.8
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 289988981368999999957998699996578
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
||.|||+|-+|.++||-|+..+. ++.++|+..
T Consensus 2 ~VvIIGaGi~G~stA~~La~~G~-~V~vler~~ 33 (416)
T PRK00711 2 RVVVLGSGVVGVTSAWYLARAGH-EVTVIDRQP 33 (416)
T ss_pred EEEEECCHHHHHHHHHHHHHCCC-CEEEEECCC
T ss_conf 79999944999999999996899-689996999
No 306
>PRK05872 short chain dehydrogenase; Provisional
Probab=93.89 E-value=0.53 Score=26.62 Aligned_cols=112 Identities=16% Similarity=0.267 Sum_probs=65.5
Q ss_pred CEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCC--------HHHHCCCC
Q ss_conf 728998-89-813689999999579986999965788128988307620544688756852697--------48837897
Q gi|254781048|r 4 NKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSD--------YSDIAEAD 73 (320)
Q Consensus 4 ~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d--------~~~l~~aD 73 (320)
.|+++| |+ +.+|..+|..++..+ +.+++.|+++++++..+.++..-.... ...+....+ .+.+-.-|
T Consensus 9 gKvalITGassGIG~aiA~~la~~G-a~Vvl~dr~~~~l~~~~~~lg~~~~~~--~~DVtd~~~v~~~v~~i~~~~G~iD 85 (296)
T PRK05872 9 GKVVFVTGAARGVGAELARRLHARG-AKVALVDLEEAELAALAAELGDRVLTV--VADVTDLAAMQAAAEEAVERFGGID 85 (296)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHCCCEEEE--EEECCCHHHHHHHHHHHHHHHCCCC
T ss_conf 9879992710589999999999879-989999899999999999838873899--9827999999999999999719987
Q ss_pred EEEEECCCCC-CCC--CCHH---HHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 8999556666-765--5746---78998899----9999997654126674088714
Q gi|254781048|r 74 VCIVTAGIPR-KPS--MSRD---DLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 74 ivVitag~~~-~~g--~~R~---dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
++|..||... .+- ++-. ..++.|.. ..+...+.+.+. .|-+++++
T Consensus 86 iLVnNAGi~~~~~~~~~~~e~~~~v~dVNl~G~~~~~ra~lp~m~~~--~G~IVnis 140 (296)
T PRK05872 86 VVVANAGIASYGSVLQVDPAAFRRVIDVNLLGVFHTVRATLPAVIER--RGYVLQVS 140 (296)
T ss_pred EEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCEEEEEE
T ss_conf 87655625799764219989972584244599999999999999977--99899996
No 307
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.88 E-value=0.19 Score=29.42 Aligned_cols=116 Identities=22% Similarity=0.228 Sum_probs=61.4
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHH-HCCCCEEEEEC
Q ss_conf 99872899889813689999999579986999965788128988307620544688756852697488-37897899955
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSD-IAEADVCIVTA 79 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~-l~~aDivVita 79 (320)
++.+||+|-|.|+||+.+|..+...+ +.++..|+++++..-.. + ....+.. ..+ +- -.+|||.+-+|
T Consensus 26 l~gk~VaIqG~GnVG~~~A~~l~~~G-akvvv~d~~~~~~~~~~----~-----~~~~~~~-~~~-~~~~~~~DIl~PcA 93 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEG-AKLIVADINEEAVARAA----E-----LFGATVV-APE-EIYSVDADVFAPCA 93 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHH----H-----CCCCEEE-CCH-HHHCCCCCEEEECC
T ss_conf 78999999898799999999999679-97999826889999998----5-----6898893-733-23227776886514
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE--ECCCCH--HHHHHHHHHC-CCCHHHHHHHCCCH
Q ss_conf 666676557467899889999999976541266740887--148420--7899998844-99865611000525
Q gi|254781048|r 80 GIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVIC--ITNPLD--AMVWALQKFS-GLPSHMVVGMAGIL 148 (320)
Q Consensus 80 g~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~iv--vtNPvD--v~~~~~~~~s-g~~~~rViG~Gt~L 148 (320)
-.-.- + ..| ++++ ++.+|+ +-||.. -...++.+.. -+-|..+.-.|...
T Consensus 94 ~~~~i---~-----~~~-------a~~i-----~ak~I~e~AN~p~t~~~~~~~L~~rgI~~iPD~laNaGGVi 147 (200)
T cd01075 94 LGGVI---N-----DDT-------IPQL-----KAKAIAGAANNQLADPRHGQMLHERGILYAPDYVVNAGGLI 147 (200)
T ss_pred CCCCC---C-----HHH-------HHHC-----CCCEEEECCCCCCCCHHHHHHHHHCCEEEECHHHEECCCHH
T ss_conf 11546---8-----999-------9870-----89699735679999978999998599299682442073544
No 308
>PRK06179 short chain dehydrogenase; Provisional
Probab=93.88 E-value=0.14 Score=30.45 Aligned_cols=111 Identities=18% Similarity=0.148 Sum_probs=62.7
Q ss_pred CCCCEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCC--------HHHHC
Q ss_conf 998728998-89-813689999999579986999965788128988307620544688756852697--------48837
Q gi|254781048|r 1 MKSNKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSD--------YSDIA 70 (320)
Q Consensus 1 mk~~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d--------~~~l~ 70 (320)
|.+.|+++| |+ +.+|.++|..++..+ +.+++.+++.++++.. .... .....+....+ .+...
T Consensus 1 M~~~KvalITGassGIG~a~A~~la~~G-~~V~~~~r~~~~~~~~----~~~~---~~~~Dvtd~~~v~~~~~~~~~~~g 72 (270)
T PRK06179 1 MSNKKVALVTGASSGIGRATAEALARAG-YRVFGTSRNPARATPI----PGVE---LLELDVTDDASVQAAVQEVIARAG 72 (270)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHCC----CCCE---EEEEECCCHHHHHHHHHHHHHHHC
T ss_conf 9899589990724699999999999879-9999996897773054----8978---999107999999999999999839
Q ss_pred CCCEEEEECCCCCCCCC---C---HHHHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 89789995566667655---7---4678998899----9999997654126674088714
Q gi|254781048|r 71 EADVCIVTAGIPRKPSM---S---RDDLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 71 ~aDivVitag~~~~~g~---~---R~dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
.-|++|..||....... + -...++.|.. ..+...+.+++.. .|.+++++
T Consensus 73 ~iDiLVNNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~lp~m~~~~-~G~Ivnis 131 (270)
T PRK06179 73 RIDVLVNNAGVGLLGAAEETSIAQAQALFDTNVFGILRMTNAVLPHMRAQG-SGRIINIS 131 (270)
T ss_pred CCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCEEEEEC
T ss_conf 988899898666788757598999999988744899999987420220179-95899986
No 309
>PRK08862 short chain dehydrogenase; Provisional
Probab=93.87 E-value=0.57 Score=26.41 Aligned_cols=115 Identities=11% Similarity=0.090 Sum_probs=63.6
Q ss_pred CCCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEE--ECCCHH----------
Q ss_conf 99872899889-81368999999957998699996578812898830762054468875685--269748----------
Q gi|254781048|r 1 MKSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLC--GTSDYS---------- 67 (320)
Q Consensus 1 mk~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~--~~~d~~---------- 67 (320)
+|.+.+-|.|+ +.+|.++|..++..+ ++++++|++++.++..+.++.... ...... ...|.+
T Consensus 3 lk~Kv~lITGas~GIG~aiA~~~A~~G-a~Vii~~r~~~~l~~~~~~i~~~g----~~~~~~~~d~~~~~~v~~~~~~i~ 77 (227)
T PRK08862 3 IKNSIILITSAGSVLGRTISCHFARLG-ATLILCDQDQSALNDTYEQCSALT----DNVYSYQLKDFSQESIRHLFDAIE 77 (227)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCC----CCEEEEEECCCCHHHHHHHHHHHH
T ss_conf 999999997988799999999999879-999999699999999999999758----974899951661999999999999
Q ss_pred -HHCC-CCEEEEECCCCCCCC---CCH----HHHHHHHHHHH----HHHHHHHHHCCCCCCEEEEC
Q ss_conf -8378-978999556666765---574----67899889999----99997654126674088714
Q gi|254781048|r 68 -DIAE-ADVCIVTAGIPRKPS---MSR----DDLLADNLKAI----EKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 68 -~l~~-aDivVitag~~~~~g---~~R----~dll~~N~~i~----~~i~~~i~~~~p~~i~ivvt 120 (320)
.+.. -|++|-.|+....+. ... .+.+..|..-+ +..++.+++....|.++.++
T Consensus 78 ~~~g~~iDvLVNNa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~G~IINi~ 143 (227)
T PRK08862 78 QQFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLTSLASTLFTYGQVAAERMRKRKKKGVIVNVI 143 (227)
T ss_pred HHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 995899749985664577886334588999999999865699999999999999669987999997
No 310
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.84 E-value=0.33 Score=27.90 Aligned_cols=123 Identities=21% Similarity=0.209 Sum_probs=64.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCC
Q ss_conf 98728998898136899999995799869999657881289883076205446887568526974883789789995566
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGI 81 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~ 81 (320)
+++||.|+|.|.-|.+++..+..+ .+.+.+|-.+... |..+.. .. ........+ ..+.++|.||.+-|.
T Consensus 5 ~~K~v~V~GlG~sG~a~~~~L~~~--~~~~~~dd~~~~~-----~~~~~~--~~-~~~~~~~~~-~~~~~~d~iV~SPGI 73 (450)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQNK--YDLIVYDDLKANR-----DIFEEL--FS-KNAIIALSD-SRWQNLDKIVLSPGI 73 (450)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHC--CCEEEEECCCCCH-----HHHHHH--HC-CCCEECCCC-CCHHCCCEEEECCCC
T ss_conf 899089995878799999999719--9989998996564-----789975--21-483602571-115219999989961
Q ss_pred CCCCCCCHHHHH-HHHHHHHHHHHHHHHHCCCCCCEEEE--CCCCHH---HHHHHHHHCCCCH
Q ss_conf 667655746789-98899999999765412667408871--484207---8999988449986
Q gi|254781048|r 82 PRKPSMSRDDLL-ADNLKAIEKVGAGIRKYAPNSFVICI--TNPLDA---MVWALQKFSGLPS 138 (320)
Q Consensus 82 ~~~~g~~R~dll-~~N~~i~~~i~~~i~~~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~~ 138 (320)
|... .-...+ +.+.+|+.++--... ..++..+|-| ||==-+ |.+.+.+..|++.
T Consensus 74 ~~~~--p~~~~a~~~~i~i~~eiel~~~-~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~~~ 133 (450)
T PRK01368 74 PLTH--EIVKIAKNFNIPITSDIDLLFE-KSKNLKFIAITGTNGKSTTTALISHILNSNGLDY 133 (450)
T ss_pred CCCC--HHHHHHHHCCCCEEEHHHHHHH-HCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 9989--9999999879958769999997-6679977999689997489999999999759962
No 311
>PRK07326 short chain dehydrogenase; Provisional
Probab=93.83 E-value=0.58 Score=26.36 Aligned_cols=113 Identities=18% Similarity=0.251 Sum_probs=68.6
Q ss_pred EEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH--------HHHCCCCE
Q ss_conf 28998-89-8136899999995799869999657881289883076205446887568526974--------88378978
Q gi|254781048|r 5 KIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY--------SDIAEADV 74 (320)
Q Consensus 5 KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~--------~~l~~aDi 74 (320)
|+++| |+ +.+|..+|..++..+ +.+++.|+++++++..+.++.+.- .......+....+. +.+..-|+
T Consensus 6 KvalITGas~GIG~aiA~~la~~G-a~V~i~~r~~~~l~~~~~~l~~~~-~~~~~~Dv~d~~~v~~~v~~~~~~~G~iDi 83 (235)
T PRK07326 6 KAALVTGGSKGIGFAVAEALAAAG-YRVAICARDESELEAAAQELGKRN-VLGLACDVRDEADVRQAVDAHVEAFGGLDI 83 (235)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHCCCC-EEEEEEECCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 899993826799999999999879-999999898899999999842398-699996389999999999999998299669
Q ss_pred EEEECCCCCCCCC---C---HHHHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 9995566667655---7---4678998899----9999997654126674088714
Q gi|254781048|r 75 CIVTAGIPRKPSM---S---RDDLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 75 vVitag~~~~~g~---~---R~dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
+|-.||....... + -...+..|.. ..+...+.+.+.+ .|.+++++
T Consensus 84 LVNNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~Iinis 138 (235)
T PRK07326 84 LVNNAGVGHFAPVEELTLEEWRLVIDTNLTGAFYTIKAAVPALLKRG-GGYIVNIS 138 (235)
T ss_pred EEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEE
T ss_conf 99888778998826599999999999987999999999999999719-98899983
No 312
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=93.81 E-value=0.36 Score=27.65 Aligned_cols=56 Identities=27% Similarity=0.421 Sum_probs=39.1
Q ss_pred CCCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEEE
Q ss_conf 99872899889-8136899999995799869999657881289883076205446887568526974-883789789995
Q gi|254781048|r 1 MKSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIVT 78 (320)
Q Consensus 1 mk~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVit 78 (320)
++.+++.|||. .-||..++.++..++. .+...+.. +.+. +.+++|||+|.+
T Consensus 26 l~Gk~vvVvGrS~~VG~Pla~lL~~~~a-tVt~~hs~--------------------------t~~l~~~~~~ADIvI~a 78 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGA-TVYSCDWK--------------------------TIQLQSKVHDADVVVVG 78 (140)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEECCC--------------------------CCCHHHHHHHCCEEEEC
T ss_conf 9999999999981249999999997889-89994699--------------------------95989985234999981
Q ss_pred CCCCC
Q ss_conf 56666
Q gi|254781048|r 79 AGIPR 83 (320)
Q Consensus 79 ag~~~ 83 (320)
+|.|.
T Consensus 79 ~G~p~ 83 (140)
T cd05212 79 SPKPE 83 (140)
T ss_pred CCCCC
T ss_conf 68767
No 313
>PRK07707 consensus
Probab=93.81 E-value=0.54 Score=26.52 Aligned_cols=114 Identities=18% Similarity=0.255 Sum_probs=62.9
Q ss_pred CEEEEE-CC-CCHHHHHHHHHHHCCCCEEEE-EECCCCCHHHHHHHHHHHCCCCCCCCEEEECCC----HHHHC-CCCEE
Q ss_conf 728998-89-813689999999579986999-965788128988307620544688756852697----48837-89789
Q gi|254781048|r 4 NKIALI-GS-GMIGGTLAHLAVLKKLGDVVL-LDIVDGMPRGKALDIAESSPVEGFGAQLCGTSD----YSDIA-EADVC 75 (320)
Q Consensus 4 ~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L-~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d----~~~l~-~aDiv 75 (320)
+|+++| |+ +.+|..+|..++..+ +++++ ++.+++.++..+..+.+.... .....+....+ ++.+. .-|++
T Consensus 2 ~KvalVTG~s~GIG~aia~~la~~G-a~V~i~~~~~~~~~~~~~~~~~~~~~~-~v~~Dl~~~~~~~~~~~~~~~~iD~l 79 (239)
T PRK07707 2 KKYALVTGASGGIGQAISKQLAQDG-YTVYLHYNNNEEKVNELQEELGEVIPV-PVQADLASPDGAEKLWSQIEHPLDAI 79 (239)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHCCCCEE-EEEEECCCHHHHHHHHHHHCCCCCEE
T ss_conf 9899996688789999999999879-989998399989999999984436606-99986899999999999857889999
Q ss_pred EEECCCCCCCC---CCH---HHHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 99556666765---574---678998899----9999997654126674088714
Q gi|254781048|r 76 IVTAGIPRKPS---MSR---DDLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 76 Vitag~~~~~g---~~R---~dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
|..||...... .+. ...+..|.. +.+...+.+.+.. .|-++.++
T Consensus 80 VnnAG~~~~~~~~~~~~e~~~~~~~~nl~~~~~~~~~~~p~m~~~~-~G~II~is 133 (239)
T PRK07707 80 VYNSGKSIFGLVTDVTNDELNDMVQLHVKSPYKLLSMLLPSMIQRK-SGNIVAVS 133 (239)
T ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEC
T ss_conf 9899999998701099999999999998999999999989998769-96799973
No 314
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase; InterPro: IPR005986 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor. This entry represents the subgroup of aspartate-semialdehyde dehydrogenase most commonly found in bacteria. Note that some bacteria, such as Chlamydia, contain the enzyme from the other subgroup (IPR005676 from INTERPRO) instead.; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0009086 methionine biosynthetic process, 0009088 threonine biosynthetic process.
Probab=93.79 E-value=0.046 Score=33.47 Aligned_cols=69 Identities=17% Similarity=0.382 Sum_probs=43.4
Q ss_pred EEEEECC-CCHHHHHHHHHHHCCC--CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHH-HHCC--CCEEEEE
Q ss_conf 2899889-8136899999995799--8699996578812898830762054468875685269748-8378--9789995
Q gi|254781048|r 5 KIALIGS-GMIGGTLAHLAVLKKL--GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYS-DIAE--ADVCIVT 78 (320)
Q Consensus 5 KV~IIGa-G~VG~~~a~~~~~~~l--~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~-~l~~--aDivVit 78 (320)
.|+|||| |+||+.+...|.-+.. .+++++=- .+-.|..+- |.+...++. ....+ ...+ -||.+++
T Consensus 1 ~vAiVGATG~VGq~~lk~LeeR~FP~~~~~~~AS--~RS~G~~~~------F~gke~~v~-~~~~~n~F~gekidIAlFS 71 (350)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLAS--ERSAGRKVT------FKGKELEVE-EAKKENSFEGEKIDIALFS 71 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHCC--CCCCCCEEE------ECCCEEEEE-CCCCCCCCCCCEEEEEEEC
T ss_conf 9478962674799998764136787755644105--678885785------127536601-0100148887703345651
Q ss_pred CCCC
Q ss_conf 5666
Q gi|254781048|r 79 AGIP 82 (320)
Q Consensus 79 ag~~ 82 (320)
||-.
T Consensus 72 AGgs 75 (350)
T TIGR01296 72 AGGS 75 (350)
T ss_pred CCHH
T ss_conf 5313
No 315
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.77 E-value=0.54 Score=26.54 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=45.2
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCE------------EEEEECCCCCHHHHHHH--H---HHHCCCCCCCCEEEECCC
Q ss_conf 872899889813689999999579986------------99996578812898830--7---620544688756852697
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGD------------VVLLDIVDGMPRGKALD--I---AESSPVEGFGAQLCGTSD 65 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~e------------i~L~D~~~~~~~g~~~D--l---~~~~~~~~~~~~v~~~~d 65 (320)
.+||+|||+|--|-++|+-|...+. + +.-|-|-+=|+.-...| + .+.=..+..+..+-..-+
T Consensus 327 GKkVAIIGsGPAGLsaA~~Lar~G~-~VTVFE~~~~~GGlL~yGIP~fRLpk~vv~~ei~~l~~lGV~f~~n~~VGkDit 405 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLTRNGV-AVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIHFELNCEVGKDIS 405 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECCCCC
T ss_conf 9989998977899999999997697-579952577788667524862227789999999999826988983717687658
Q ss_pred HHHH-CCCCEEEEECCCC
Q ss_conf 4883-7897899955666
Q gi|254781048|r 66 YSDI-AEADVCIVTAGIP 82 (320)
Q Consensus 66 ~~~l-~~aDivVitag~~ 82 (320)
+++| ++-|-|+++.|..
T Consensus 406 l~eL~~~yDAVfla~Ga~ 423 (654)
T PRK12769 406 LESLLEDYDAVFVGVGTY 423 (654)
T ss_pred HHHHHHCCCEEEEECCCC
T ss_conf 999973699899951788
No 316
>pfam04016 DUF364 Domain of unknown function (DUF364). Archaeal domain of unknown function.
Probab=93.75 E-value=0.23 Score=28.98 Aligned_cols=11 Identities=55% Similarity=0.827 Sum_probs=4.2
Q ss_pred HCCCCEEEEEC
Q ss_conf 37897899955
Q gi|254781048|r 69 IAEADVCIVTA 79 (320)
Q Consensus 69 l~~aDivVita 79 (320)
+..||+++||+
T Consensus 160 Lp~~D~viITg 170 (229)
T pfam04016 160 LPEADVVIITG 170 (229)
T ss_pred CCCCCEEEEEE
T ss_conf 12488999984
No 317
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=93.73 E-value=0.6 Score=26.25 Aligned_cols=79 Identities=19% Similarity=0.213 Sum_probs=46.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEE------------CCCCCHHHHHHH--HHHHCC---CCCCCCEEEECCC
Q ss_conf 87289988981368999999957998699996------------578812898830--762054---4688756852697
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLD------------IVDGMPRGKALD--IAESSP---VEGFGAQLCGTSD 65 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D------------~~~~~~~g~~~D--l~~~~~---~~~~~~~v~~~~d 65 (320)
.+||+|||+|--|-+.||-|...+. ++.+|+ |-+-++--..+| ++.... ....+..+-..-+
T Consensus 137 gkkVAVIGaGPAGLsaA~~La~~G~-~VtVfE~~~~~GGml~~GIP~yRLP~~vl~~ei~~i~~~GV~~~~n~~vg~dit 215 (560)
T PRK12771 137 GKRVAVIGGGPAGLSAAYQLRRLGH-AVTIFEAGPKLGGMMRYGIPGYRLPRDVLDAEIQRILDLGVEVKLGVRVGEDIT 215 (560)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEECCCCC
T ss_conf 9989998977899999999997698-589967678889888356875447589999999999964967983878446567
Q ss_pred HHHH-CCCCEEEEECCCC
Q ss_conf 4883-7897899955666
Q gi|254781048|r 66 YSDI-AEADVCIVTAGIP 82 (320)
Q Consensus 66 ~~~l-~~aDivVitag~~ 82 (320)
+++| ++-|-|+++.|.+
T Consensus 216 ~~~L~~~yDAV~la~Ga~ 233 (560)
T PRK12771 216 LEQLEGDYDAVFVAIGAQ 233 (560)
T ss_pred HHHHHCCCCEEEECCCCC
T ss_conf 999717788899916878
No 318
>pfam03059 NAS Nicotianamine synthase protein. Nicotianamine synthase EC:2.5.1.43 catalyses the trimerisation of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is great
Probab=93.69 E-value=0.61 Score=26.21 Aligned_cols=11 Identities=55% Similarity=0.887 Sum_probs=4.9
Q ss_pred EEEEECCCCHH
Q ss_conf 28998898136
Q gi|254781048|r 5 KIALIGSGMIG 15 (320)
Q Consensus 5 KV~IIGaG~VG 15 (320)
||+.||+|-+-
T Consensus 124 ~vAFIGSGPLP 134 (277)
T pfam03059 124 RIAFIGSGPLP 134 (277)
T ss_pred EEEEECCCCCC
T ss_conf 48996378861
No 319
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase; InterPro: IPR000706 N -Acetylglutamate (NAG) fulfils distinct biological roles in lower and higher organisms. In prokaryotes, lower eukaryotes and plants it is the first intermediate in the biosynthesis of arginine, whereas in ureotelic (excreting nitrogen mostly in the form of urea) vertebrates, it is an essential allosteric cofactor for carbamyl phosphate synthetase I (CPSI), the first enzyme of the urea cycle. The pathway that leads from glutamate to arginine in lower organisms employs eight steps, starting with the acetylation of glutamate to form NAG. In these species, NAG can be produced by two enzymatic reactions: one catalysed by NAG synthase (NAGS) and the other by ornithine acetyltransferase (OAT). In ureotelic species, NAG is produced exclusively by NAGS. In lower organisms, NAGS is feedback-inhibited by L-arginine, whereas mammalian NAGS activity is significantly enhanced by this amino acid. The NAGS genes of bacteria, fungi and mammals are more diverse than other arginine-biosynthesis and urea-cycle genes. The evolutionary relationship between the distinctly different roles of NAG and its metabolism in lower and higher organisms remains to be determined . The pathway from glutamate to arginine is: NAGS; N-acetylglutamate synthase (2.3.1.1 from EC) (glutamate to N-acetylglutamate) NAGK; N-acetylglutamate kinase (2.7.2.8 from EC) (N-acetylglutamate to N-acetylglutamate-5P) NAGSA; N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (N-acetylglutamate-5P to N-acetylglumate semialdehyde) Acetylornithine aminotransferase (2.6.1.11 from EC) (N-acetylglumate semialdehyde to N-acetylornithine) Acetylornithine deacetylase (3.5.1.16 from EC) (N-acetylornithine to ornithine) Arginase (3.5.3.1 from EC) (ornithine to arginine) N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (AGPR) , is the enzyme that catalyzes the third step in the biosynthesis of arginine from glutamate, the NADP-dependent reduction of N-acetyl-5-glutamyl phosphate into N-acetylglutamate 5-semialdehyde. In bacteria it is a monofunctional protein of 35 to 38 kD (gene argC), while in fungi it is part of a bifunctional mitochondrial enzyme (gene ARG5,6, arg11 or arg-6) which contains a N-terminal acetylglutamate kinase (2.7.2.8 from EC) domain and a C-terminal AGPR domain. In the Escherichia coli enzyme, a cysteine has been shown to be implicated in the catalytic activity, and the region around this residue is well conserved.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0006526 arginine biosynthetic process.
Probab=93.63 E-value=0.18 Score=29.57 Aligned_cols=74 Identities=23% Similarity=0.350 Sum_probs=43.7
Q ss_pred CEEEEECC-CCHHHHHHHHHHHCCCCEEE-EEECCCCCHHHHHHHHHHHCCCCCCCC-EEEECCCH---HHH--CCCCEE
Q ss_conf 72899889-81368999999957998699-996578812898830762054468875-68526974---883--789789
Q gi|254781048|r 4 NKIALIGS-GMIGGTLAHLAVLKKLGDVV-LLDIVDGMPRGKALDIAESSPVEGFGA-QLCGTSDY---SDI--AEADVC 75 (320)
Q Consensus 4 ~KV~IIGa-G~VG~~~a~~~~~~~l~ei~-L~D~~~~~~~g~~~Dl~~~~~~~~~~~-~v~~~~d~---~~l--~~aDiv 75 (320)
-||+|||| |.-|.-+.-+|...+-.|+. ++-..+. ..|+.+.--|-- +.+... ......+. ++. .+||+|
T Consensus 1 ~~V~IvGAsGYtG~EL~RLL~~HP~~e~~~~~ss~~~-~aG~~~~~~~P~-L~g~~~~~~~~~~~~~~~~~~~L~~~DvV 78 (361)
T TIGR01850 1 IKVGIVGASGYTGGELLRLLANHPEVEITYLVSSRES-LAGKPLSEVHPH-LRGLVDYLNLEPLDDAKLEEIELEDADVV 78 (361)
T ss_pred CEEEEEECCCHHHHHHHHHHHCCCCEEEEEEEEEEEH-HCCCCHHHHCCC-HHHHHCCCCCCCCCHHHHHHHHHCCCCEE
T ss_conf 9689993344468999999841995378888876201-138525773661-11010023336667667888621376789
Q ss_pred EEEC
Q ss_conf 9955
Q gi|254781048|r 76 IVTA 79 (320)
Q Consensus 76 Vita 79 (320)
+++-
T Consensus 79 FlAl 82 (361)
T TIGR01850 79 FLAL 82 (361)
T ss_pred EECC
T ss_conf 9868
No 320
>PRK07825 short chain dehydrogenase; Provisional
Probab=93.63 E-value=0.62 Score=26.14 Aligned_cols=115 Identities=16% Similarity=0.237 Sum_probs=67.7
Q ss_pred CCCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH--------HHHCC
Q ss_conf 99872899889-8136899999995799869999657881289883076205446887568526974--------88378
Q gi|254781048|r 1 MKSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY--------SDIAE 71 (320)
Q Consensus 1 mk~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~--------~~l~~ 71 (320)
++.+.+.|.|+ +.+|.++|..++..+ +.+++.|+++++++..+.++.....+ ...+....+. +.+-.
T Consensus 3 l~gKvvlITGassGIG~a~A~~la~~G-a~V~i~~r~~~~l~~~~~~~~~~~~~---~~DVtd~~~v~~~~~~~~~~~G~ 78 (273)
T PRK07825 3 LRGKVIAITGGARGIGLATARALAALG-AKVAIGDLDEALAKESAAELGLVVGG---PLDVTDPASFAAFLDAVEADLGP 78 (273)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCCEEE---ECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 999889992623399999999999879-98999979999999999860785599---91479999999999999997099
Q ss_pred CCEEEEECCCCC-CCCC--CHH---HHHHHHH----HHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 978999556666-7655--746---7899889----99999997654126674088714
Q gi|254781048|r 72 ADVCIVTAGIPR-KPSM--SRD---DLLADNL----KAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 72 aDivVitag~~~-~~g~--~R~---dll~~N~----~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
-|++|..||... .+-. +.. ..++.|. ...+...+.+.+.+ .|.+++++
T Consensus 79 iDiLVNNAGi~~~~~~~e~~~e~~~~~~~vNl~g~~~~~~~~lp~M~~~~-~G~IVnis 136 (273)
T PRK07825 79 IDVLVNNAGIMPVGPFLDEPDRATRRILDVNVYGVILGSKLAAPRMVPRG-RGHIVNVA 136 (273)
T ss_pred CCEEEECCCCCCCCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC-CCEEEEEE
T ss_conf 77899878778998734399999999988603999999999999999739-94799984
No 321
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase; InterPro: IPR010110 This entry represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.; GO: 0004764 shikimate 5-dehydrogenase activity, 0005737 cytoplasm.
Probab=93.62 E-value=0.45 Score=27.09 Aligned_cols=135 Identities=13% Similarity=0.119 Sum_probs=75.8
Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEE-CCCHHH--HCCCCEEEEECCCC
Q ss_conf 899889813689999999579986999965788128988307620544688756852-697488--37897899955666
Q gi|254781048|r 6 IALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCG-TSDYSD--IAEADVCIVTAGIP 82 (320)
Q Consensus 6 V~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~-~~d~~~--l~~aDivVitag~~ 82 (320)
=-|||||.--.+..|.|..-++.+|.++.|+++|++-.. |.......-+.++. +...++ .+++.|.|-| +|
T Consensus 133 glviGaGGtsrAA~yaL~sLG~~~I~~inR~~dKl~~L~----~~~~~~~~i~~~e~l~~~~~~i~v~~~~v~vSt--vP 206 (291)
T TIGR01809 133 GLVIGAGGTSRAAVYALASLGVKDIYVINRSKDKLKKLV----DLLVSEFVIIRLESLDKELEEIEVKDVEVAVST--VP 206 (291)
T ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH----HHHCCCCEEEEEECCCCCCCCCEEEEEEEEEEE--CC
T ss_conf 588838721489999998669970699735866766887----741356135665101334110202456788861--57
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE---CCCCHHHHHHHHHHCCCCHHHHH-HHCCCHHHHHHHH
Q ss_conf 6765574678998899999999765412667408871---48420789999884499865611-0005256899999
Q gi|254781048|r 83 RKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICI---TNPLDAMVWALQKFSGLPSHMVV-GMAGILDSARFRY 155 (320)
Q Consensus 83 ~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivv---tNPvDv~~~~~~~~sg~~~~rVi-G~Gt~LDs~R~~~ 155 (320)
...- -|..++....+ +--.=++.+|.++++=+ +||-|+|+-.-.|..+ ||| |+-..|+..-.+.
T Consensus 207 aD~p-~d~~~l~~~~~----fl~~~~~~~f~~~lLdaaY~p~~Tpl~~i~~ak~~w----~vi~GlqmLlhQg~aQf 274 (291)
T TIGR01809 207 ADKP-LDDEVLEALKR----FLLKKAKAAFVGILLDAAYDPSVTPLVIIAKAKANW----KVISGLQMLLHQGVAQF 274 (291)
T ss_pred CCCC-CCHHHHHHHHH----HHHHCCCHHHHHHHHHHCCCCCCCCEEEEEEHHCCC----EEECHHHHHHHHHHHHH
T ss_conf 8864-68889999989----875133001101255431488986102233013186----47433689999999999
No 322
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.60 E-value=0.12 Score=30.69 Aligned_cols=32 Identities=31% Similarity=0.599 Sum_probs=29.3
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 28998898136899999995799869999657
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIV 36 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~ 36 (320)
||-|+|+|.+|..++..+++.++.+|.++|-+
T Consensus 1 KVlvvGaGglG~e~lk~La~~Gvg~i~ivD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 98998888889999999998289859997199
No 323
>PRK07856 short chain dehydrogenase; Provisional
Probab=93.58 E-value=0.2 Score=29.29 Aligned_cols=118 Identities=12% Similarity=0.081 Sum_probs=61.7
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 9872899889-813689999999579986999965788128988307620544688756852697488378978999556
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
+.+.+-|.|+ +.+|..+|..++..+ +++++.++++....+....+-.+.-............-.+....-|++|-.||
T Consensus 7 ~~K~alITGgs~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnNAG 85 (254)
T PRK07856 7 TGRVVLVTGGTRGVGAGISEAFLAAG-ATVVVCGRRAPEVDGRPAEFHACDIRDPDQVAALVDAIAERHGRLDVLVNNAG 85 (254)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 99989994767689999999999879-99999979855748984399984699999999999999998099888998898
Q ss_pred CC-CCCCC--CH---HHHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 66-67655--74---678998899----9999997654126674088714
Q gi|254781048|r 81 IP-RKPSM--SR---DDLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 81 ~~-~~~g~--~R---~dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
.. ..+-. +. ..+++.|.. ..+...+.+.+....|.++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~vNl~~~~~l~q~~~~~m~~~~~~G~IVnis 135 (254)
T PRK07856 86 GSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIG 135 (254)
T ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 89998813499999999999982899999999999999727997899945
No 324
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=93.57 E-value=0.22 Score=29.02 Aligned_cols=73 Identities=19% Similarity=0.257 Sum_probs=40.8
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH--HHHHCCCCCCCCEEEECCCHH--HHCCCCEEE
Q ss_conf 9872899889-81368999999957998699996578812898830--762054468875685269748--837897899
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALD--IAESSPVEGFGAQLCGTSDYS--DIAEADVCI 76 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~D--l~~~~~~~~~~~~v~~~~d~~--~l~~aDivV 76 (320)
++.||+|+|+ |..|..+.-++....-.|+.++.-.+ .+|..+- .-|..-... .+ ...-|.+ ...+||+|+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~--~~g~~~~~~~p~l~g~~~--l~-~~~~~~~~~~~~~~DvvF 75 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRE--RAGKPVSDVHPNLRGLVD--LP-FQTIDPEKIELDECDVVF 75 (349)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECHH--HCCCCHHHHCCCCCCCCC--CC-CCCCCHHHHHCCCCCEEE
T ss_conf 9815999778877489999998659973799963166--458706875824235345--54-335774553015688899
Q ss_pred EEC
Q ss_conf 955
Q gi|254781048|r 77 VTA 79 (320)
Q Consensus 77 ita 79 (320)
++-
T Consensus 76 lal 78 (349)
T COG0002 76 LAL 78 (349)
T ss_pred EEC
T ss_conf 906
No 325
>PRK05875 short chain dehydrogenase; Provisional
Probab=93.57 E-value=0.64 Score=26.07 Aligned_cols=116 Identities=12% Similarity=0.106 Sum_probs=66.4
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEE--EECCCHH-----------
Q ss_conf 9872899889-8136899999995799869999657881289883076205446887568--5269748-----------
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQL--CGTSDYS----------- 67 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v--~~~~d~~----------- 67 (320)
+.+.+-|.|+ +.+|.++|..++..+ +++++.++++++++..+.++........ .... .-..+.+
T Consensus 6 ~gK~alVTGas~GIG~aiA~~la~~G-a~Vii~~r~~~~l~~~~~~l~~~~~~~~-~v~~~~~Dvs~~~~v~~~v~~~~~ 83 (277)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAALVAAG-AAVMIVGRNPDKLAAAAEEIEALAGGAG-AVRYEPADVTNEDEVARAVDAATA 83 (277)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99989994887499999999999879-9899997988999999999996127886-289995789999999999999999
Q ss_pred HHCCCCEEEEECCCCCC--CCC--CH---HHHHHHHH----HHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 83789789995566667--655--74---67899889----99999997654126674088714
Q gi|254781048|r 68 DIAEADVCIVTAGIPRK--PSM--SR---DDLLADNL----KAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 68 ~l~~aDivVitag~~~~--~g~--~R---~dll~~N~----~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
..-.-|++|..||.... |-. +- ...++.|. .+.+...+.+.+.. .|-++.++
T Consensus 84 ~~g~iD~LVnnAg~~~~~~~~~~~~~e~w~~~~~iNl~g~~~~~~~~~~~m~~~~-~GsIVnis 146 (277)
T PRK05875 84 WHGRLHGVVHCAGGSETIGPITQIDSEAWRRTVDLNVNGTMYVLKHAARELVRGG-GGSFVGIS 146 (277)
T ss_pred HHCCCEEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEE
T ss_conf 8499539998781367879725599999999999973889999999999998748-97241475
No 326
>PRK07479 consensus
Probab=93.49 E-value=0.66 Score=25.99 Aligned_cols=115 Identities=19% Similarity=0.231 Sum_probs=66.5
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-----------HHH
Q ss_conf 9872899889-8136899999995799869999657881289883076205446887568526974-----------883
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-----------SDI 69 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-----------~~l 69 (320)
+.+.+-|.|+ +.+|..+|..++..+ +++++.|+++++++..+.++...-... .....-..|. +.+
T Consensus 4 ~gK~alITGgs~GIG~a~a~~la~~G-~~V~i~~~~~~~~~~~~~~l~~~g~~~--~~~~~Dv~~~~~~~~~~~~~~~~~ 80 (252)
T PRK07479 4 SGKVAIVTGAGSGFGEGIAKRFAREG-AKVVVADLNAAAAERVASEIADAGGNA--IAVAADVSRGADVEALVEAALEAF 80 (252)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCCCE--EEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 99889993887689999999999879-999999798999999999998539978--999925899999999999999981
Q ss_pred CCCCEEEEECCCC--CCCCC--CHH---HHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 7897899955666--67655--746---78998899----9999997654126674088714
Q gi|254781048|r 70 AEADVCIVTAGIP--RKPSM--SRD---DLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 70 ~~aDivVitag~~--~~~g~--~R~---dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
-.-|++|..||.. .+|-. +.. ..+..|.. ..+...+.+++.. .|.+++++
T Consensus 81 G~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~-~G~Iv~is 141 (252)
T PRK07479 81 GRVDIVVNNAGTTHRNKPMLDVTEAEFDRVYAVNVKSIYLSTRHFVPHFRAQG-GGVIINIA 141 (252)
T ss_pred CCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEE
T ss_conf 99859998997668998827699999999999986310565444049898679-97299980
No 327
>PRK06138 short chain dehydrogenase; Provisional
Probab=93.47 E-value=0.66 Score=25.97 Aligned_cols=112 Identities=16% Similarity=0.162 Sum_probs=66.5
Q ss_pred CEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-----------HHHC
Q ss_conf 728998-89-8136899999995799869999657881289883076205446887568526974-----------8837
Q gi|254781048|r 4 NKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-----------SDIA 70 (320)
Q Consensus 4 ~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-----------~~l~ 70 (320)
.|+++| |+ +.+|..+|..++..+ +++++.|++++.++..+..+........+... .+|. +.+-
T Consensus 5 gKvalVTGas~GIG~aia~~la~~G-a~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D---vs~~~~v~~~~~~~~~~~G 80 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREG-ARVVVADRDAEAAERVAAAIAAGGRAFARQGD---VGSAEAVEALVDFVAARWG 80 (252)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHCCCCEEEEEEC---CCCHHHHHHHHHHHHHHCC
T ss_conf 9889994746799999999999879-98999968878999999998379919999942---8999999999999999829
Q ss_pred CCCEEEEECCCCCCCC---CCH---HHHHHHHHHH----HHHHHHHHHHCCCCCCEEEEC
Q ss_conf 8978999556666765---574---6789988999----999997654126674088714
Q gi|254781048|r 71 EADVCIVTAGIPRKPS---MSR---DDLLADNLKA----IEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 71 ~aDivVitag~~~~~g---~~R---~dll~~N~~i----~~~i~~~i~~~~p~~i~ivvt 120 (320)
.-|++|-.||...... ++. ...+..|..= .+...+.+.+.. .|-+|+++
T Consensus 81 ~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~f~~~~~~~p~m~~~~-~G~IInis 139 (252)
T PRK06138 81 RLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQG-GGSIVNTA 139 (252)
T ss_pred CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEC
T ss_conf 998999898899999801099999999999996999999999999999819-96799976
No 328
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.46 E-value=0.66 Score=25.96 Aligned_cols=136 Identities=21% Similarity=0.288 Sum_probs=73.5
Q ss_pred CCEEEEECCCCHHHH--HHHHHH---HC-CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECC-CH----HHHCC
Q ss_conf 872899889813689--999999---57-998699996578812898830762054468875685269-74----88378
Q gi|254781048|r 3 SNKIALIGSGMIGGT--LAHLAV---LK-KLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTS-DY----SDIAE 71 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~--~a~~~~---~~-~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~-d~----~~l~~ 71 (320)
.+-|++||--.||.| +|-+++ +. +=..+.|+-.+.-+.-|+.+ |..-+..++....+..+. +. +.++|
T Consensus 210 ~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQ-Lk~Ya~ilgvp~~v~~~~~~l~~al~~~~~ 288 (412)
T PRK05703 210 GGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQ-LKTYAKIMGIPVKVAYDPKELAKALEQLAN 288 (412)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHH-HHHHHHHCCCEEEEECCHHHHHHHHHHHCC
T ss_conf 7369998888875676999999999997299817999837677779999-999999719737984799999999987158
Q ss_pred CCEEEE-ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC--HHHHHHHHHHCCCCHHHHHHHCCCH
Q ss_conf 978999-5566667655746789988999999997654126674088714842--0789999884499865611000525
Q gi|254781048|r 72 ADVCIV-TAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPL--DAMVWALQKFSGLPSHMVVGMAGIL 148 (320)
Q Consensus 72 aDivVi-tag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPv--Dv~~~~~~~~sg~~~~rViG~Gt~L 148 (320)
+|+|+| |||...+... -+.++-..+....+.-+++|++--. ..|..++.+++.++.+++|-| =|
T Consensus 289 ~dlILIDTaG~s~~d~~-----------~~~eL~~~~~~~~~~~~~LVlsat~~~~dl~~i~~~f~~~~~~~lI~T--Kl 355 (412)
T PRK05703 289 CDLILIDTAGRSQRDPR-----------LISELKALIENSKPIDVYLVLSATTKYRDLKDIVKHFSRLPLDGLILT--KL 355 (412)
T ss_pred CCEEEEECCCCCCCCHH-----------HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEE--EE
T ss_conf 99799968988978999-----------999999998624887189997598998999999998467999879997--11
Q ss_pred HHHH
Q ss_conf 6899
Q gi|254781048|r 149 DSAR 152 (320)
Q Consensus 149 Ds~R 152 (320)
|..+
T Consensus 356 DEt~ 359 (412)
T PRK05703 356 DETS 359 (412)
T ss_pred CCCC
T ss_conf 2899
No 329
>PRK06125 short chain dehydrogenase; Provisional
Probab=93.46 E-value=0.66 Score=25.96 Aligned_cols=114 Identities=11% Similarity=0.104 Sum_probs=69.6
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEE--ECCCH-------HHHCC
Q ss_conf 9872899889-81368999999957998699996578812898830762054468875685--26974-------88378
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLC--GTSDY-------SDIAE 71 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~--~~~d~-------~~l~~ 71 (320)
+.+++-|.|+ +.+|..+|..++..+ +++++.|+++++++..+.+|..... ...... -.++. +.+.+
T Consensus 6 ~gK~alITG~s~GIG~aiA~~la~~G-a~V~i~~r~~~~l~~~~~~l~~~~~---~~~~~~~~D~~~~~~~~~~~~~~g~ 81 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEG-CHLVLAARDADALAALAADLRAAHG---VDVAVHALDLSSPEAREQLAAEAGD 81 (259)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHCC---CCEEEEECCCCCHHHHHHHHHHHCC
T ss_conf 99989996877689999999999879-9899997988999999999987009---8669998889999999999998589
Q ss_pred CCEEEEECCCCCCCCC---CHH---HHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 9789995566667655---746---78998899----9999997654126674088714
Q gi|254781048|r 72 ADVCIVTAGIPRKPSM---SRD---DLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 72 aDivVitag~~~~~g~---~R~---dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
-|++|-.||....... +.. ..+..|.. +.+.+.+.+++.. .+.++.++
T Consensus 82 iDiLVnnAG~~~~~~~~~~~~~~w~~~~~vnl~~~~~l~~~~~p~m~~~~-~G~Iini~ 139 (259)
T PRK06125 82 IDILVNNAGAIPGGSLDDVDDAAWRAGWELKVFGYINLTRLFYPRMKARG-SGVIVNVI 139 (259)
T ss_pred CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEE
T ss_conf 98999768778998645499999999999863437889999999765349-81999994
No 330
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=93.44 E-value=0.35 Score=27.73 Aligned_cols=108 Identities=18% Similarity=0.218 Sum_probs=59.7
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCE-EEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCC
Q ss_conf 872899889813689999999579986-9999657881289883076205446887568526974883789789995566
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGD-VVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGI 81 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~e-i~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~ 81 (320)
+-|++|||.|++|.-+.+-+.....-| ..++.++++ .+|.+.--+ ++......+..-+-+..+.|+|+=+-++
T Consensus 1 k~~vAIiGsGnIGtDLm~Ki~rS~~le~~~~vG~dp~-S~GL~rA~~-----lGv~~s~~Gid~ll~~~~idiVFDATSA 74 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPE-SDGLARARE-----LGVKTSAEGVDGLLANPDIDIVFDATSA 74 (285)
T ss_pred CCEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-CHHHHHHHH-----CCCCCCCCCHHHHHHCCCCCEEEECCCH
T ss_conf 9369998998338999999866787216999824889-828999998-----4996637688989609997889966984
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHH
Q ss_conf 66765574678998899999999765412667408871484207
Q gi|254781048|r 82 PRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDA 125 (320)
Q Consensus 82 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv 125 (320)
.--..|.+.+++.+..+....|.++==.+-.|+|.
T Consensus 75 ---------~aH~~h~~~l~~~g~~~IDLTPAaiGp~~VP~VNl 109 (285)
T TIGR03215 75 ---------KAHARHARLLAELGKIVIDLTPAAIGPYVVPAVNL 109 (285)
T ss_pred ---------HHHHHHHHHHHHCCCEEEECCCCCCCCEEECCCCH
T ss_conf ---------67999999999759979978810159754555387
No 331
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=93.38 E-value=0.17 Score=29.78 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=30.1
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 998728998898136899999995799869999657
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIV 36 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~ 36 (320)
||+-.|.|+|+|-+|.++|..+...++ .+.++|..
T Consensus 1 M~~~DV~IvGaG~vGl~lAl~La~~G~-~V~iiE~~ 35 (384)
T PRK08849 1 MNKYDIAVVGGGMVGAATAIGFAKQGR-SVAVIEGF 35 (384)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
T ss_conf 981899999924999999999995799-59999689
No 332
>PRK07574 formate dehydrogenase; Provisional
Probab=93.36 E-value=0.48 Score=26.89 Aligned_cols=11 Identities=36% Similarity=0.667 Sum_probs=5.1
Q ss_pred HHCCCCEEEEE
Q ss_conf 83789789995
Q gi|254781048|r 68 DIAEADVCIVT 78 (320)
Q Consensus 68 ~l~~aDivVit 78 (320)
++.|+||||-+
T Consensus 87 ~l~da~ivis~ 97 (385)
T PRK07574 87 ELPDADVVISQ 97 (385)
T ss_pred HCCCCEEEECC
T ss_conf 15776399745
No 333
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase; InterPro: IPR011283 This entry represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of 1.1.1.36 from EC is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. ; GO: 0018454 acetoacetyl-CoA reductase activity, 0042619 poly-hydroxybutyrate biosynthetic process, 0005737 cytoplasm.
Probab=93.36 E-value=0.21 Score=29.18 Aligned_cols=81 Identities=21% Similarity=0.308 Sum_probs=48.6
Q ss_pred EEEEE-C-CCCHHHHHHHHHHHCCCCEEEEEEC-CCCCHHHHHHHHHHHCCCCCCCCEEEE--CCCHHHH----------
Q ss_conf 28998-8-9813689999999579986999965-788128988307620544688756852--6974883----------
Q gi|254781048|r 5 KIALI-G-SGMIGGTLAHLAVLKKLGDVVLLDI-VDGMPRGKALDIAESSPVEGFGAQLCG--TSDYSDI---------- 69 (320)
Q Consensus 5 KV~II-G-aG~VG~~~a~~~~~~~l~ei~L~D~-~~~~~~g~~~Dl~~~~~~~~~~~~v~~--~~d~~~l---------- 69 (320)
||+.| | .|.+|+++...|+..+.-=+.=+-. ++++++.+..... +.++...+.. ..+|++|
T Consensus 1 rvALVTGg~GGIGtAIC~rL~~dG~~V~An~~p~N~~~a~~W~~~~~----~~g~~~~~~~~DV~~~e~c~~~v~~v~a~ 76 (244)
T TIGR01829 1 RVALVTGGTGGIGTAICTRLAKDGYRVAANYVPSNEERAEAWLQEQG----AQGFDFAVVEGDVSSFEDCKAAVAKVEAE 76 (244)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHC----CCCCEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 94788578774468999999875988988178982589999998626----98514789872767778999999999971
Q ss_pred -CCCCEEEEECCCCCCCCCCHHHHHHH
Q ss_conf -78978999556666765574678998
Q gi|254781048|r 70 -AEADVCIVTAGIPRKPSMSRDDLLAD 95 (320)
Q Consensus 70 -~~aDivVitag~~~~~g~~R~dll~~ 95 (320)
=--||+|-.||. ||+..|++
T Consensus 77 lGpvDvLVNNAGI------TRD~~F~K 97 (244)
T TIGR01829 77 LGPVDVLVNNAGI------TRDKTFKK 97 (244)
T ss_pred CCCEEEEEECCCC------CCCHHHCC
T ss_conf 1953689868864------40303124
No 334
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=93.33 E-value=0.7 Score=25.82 Aligned_cols=115 Identities=14% Similarity=0.177 Sum_probs=62.8
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCC--------HHHHCCC
Q ss_conf 9872899889-813689999999579986999965788128988307620544688756852697--------4883789
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSD--------YSDIAEA 72 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d--------~~~l~~a 72 (320)
|.+.+-|.|+ +.+|..+|..++..+ ++++++|+++++++....++.+....... .+....+ .+..-.-
T Consensus 5 ~gK~alVTGas~GIG~aia~~l~~~G-a~V~~~~r~~~~l~~~~~~~~~~~~~~~~--Dv~~~~~~~~~~~~~~~~~G~i 81 (263)
T PRK06200 5 TGQVALITGGGSGIGRALVERFLAEG-ARVAVLERSAEKCASLRQRFGDDVLVVEG--DVTSYADNQRAVAQTVDRFGKL 81 (263)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHCCCEEEEEC--CCCCHHHHHHHHHHHHHHHCCC
T ss_conf 72889995866799999999999879-99999979999999999981886468717--9999999999999999984998
Q ss_pred CEEEEECCCC--CCC--CCCH-------HHHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 7899955666--676--5574-------678998899----9999997654126674088714
Q gi|254781048|r 73 DVCIVTAGIP--RKP--SMSR-------DDLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 73 DivVitag~~--~~~--g~~R-------~dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
|++|..||.. ..+ +.+- .+.+..|.. ..+...+.+++.. -.++++.|
T Consensus 82 DiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~-g~iI~~~S 143 (263)
T PRK06200 82 DCFVGNAGIWDYYTSLVDIPAETLDTAFDEIFRVNVKGYLLGAKAALPALKASG-GSIIFTLS 143 (263)
T ss_pred CEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CEEEEECC
T ss_conf 889975754677776033997899999999999987999999999989886079-77999822
No 335
>PRK08703 short chain dehydrogenase; Provisional
Probab=93.30 E-value=0.7 Score=25.79 Aligned_cols=118 Identities=16% Similarity=0.165 Sum_probs=68.4
Q ss_pred CCCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCC--EEEECC--CHH--------
Q ss_conf 99872899889-81368999999957998699996578812898830762054468875--685269--748--------
Q gi|254781048|r 1 MKSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGA--QLCGTS--DYS-------- 67 (320)
Q Consensus 1 mk~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~--~v~~~~--d~~-------- 67 (320)
|+.+.+-|.|+ +.+|..+|..++..+ +++++.++++++++..+.++........+.. .+.... +++
T Consensus 4 L~gK~~lITGas~GIG~aiA~~la~~G-a~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAG-ATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAE 82 (239)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 596989994886289999999999879-9899997988899999999997379954999985056307899999999999
Q ss_pred HH-CCCCEEEEECCCC--CCCCC--CHHH---HHHHHH----HHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 83-7897899955666--67655--7467---899889----99999997654126674088714
Q gi|254781048|r 68 DI-AEADVCIVTAGIP--RKPSM--SRDD---LLADNL----KAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 68 ~l-~~aDivVitag~~--~~~g~--~R~d---ll~~N~----~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
+. -.-|++|..||.. ..|-. +-.+ .+..|. .+.+.+.+.+++. ++|.+++++
T Consensus 83 ~~~G~lD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~p~m~~~-~~g~Ii~is 146 (239)
T PRK08703 83 ATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQS-PDASVIFVG 146 (239)
T ss_pred HHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEEEE
T ss_conf 8379976899666545788953328999999999888089999999999999877-990899981
No 336
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=93.26 E-value=0.71 Score=25.78 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=32.4
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 998728998898136899999995799869999657
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIV 36 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~ 36 (320)
|.+.||-|+|++.+|.-+|--+.+.++..+.|+|-.
T Consensus 18 l~~s~VLiiG~~glG~EiaKNLvLaGV~svti~D~~ 53 (425)
T cd01493 18 LESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGS 53 (425)
T ss_pred HHHCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 976939999997119999987213289769999599
No 337
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=93.26 E-value=0.6 Score=26.23 Aligned_cols=80 Identities=23% Similarity=0.252 Sum_probs=46.6
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCC-----------EEEEEECCCCCHHHHHHH--HHHHCCCCC--CCCEEEECC--C
Q ss_conf 87289988981368999999957998-----------699996578812898830--762054468--875685269--7
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLG-----------DVVLLDIVDGMPRGKALD--IAESSPVEG--FGAQLCGTS--D 65 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~-----------ei~L~D~~~~~~~g~~~D--l~~~~~~~~--~~~~v~~~~--d 65 (320)
.+||+|||+|--|-++||-|...+.. -+.-|-|-+=++--.++| ++... .++ +........ +
T Consensus 193 GKkVAIIGaGPAGLsaAy~L~~~Gh~VTVfE~~~~~GGmlryGIP~yRLPk~vld~EI~~i~-~~GV~~~~n~~vG~dit 271 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLR-AMGAEFRFNTVFGRDIT 271 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHH-HCCCEEEEEEEECCCCC
T ss_conf 99799968378999999999977990699815888898676448633389999999999999-71985886679477477
Q ss_pred HHHH-CCCCEEEEECCCCC
Q ss_conf 4883-78978999556666
Q gi|254781048|r 66 YSDI-AEADVCIVTAGIPR 83 (320)
Q Consensus 66 ~~~l-~~aDivVitag~~~ 83 (320)
+++| ++-|-|+++.|.+.
T Consensus 272 l~~L~~~yDAVflaiGa~~ 290 (652)
T PRK12814 272 LEELQKEFDAVLLAVGAQK 290 (652)
T ss_pred HHHHHHHCCEEEEEECCCC
T ss_conf 9999865899999755787
No 338
>PRK07045 putative monooxygenase; Reviewed
Probab=93.24 E-value=0.19 Score=29.53 Aligned_cols=36 Identities=33% Similarity=0.497 Sum_probs=29.5
Q ss_pred CCCC--EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 9987--289988981368999999957998699996578
Q gi|254781048|r 1 MKSN--KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 1 mk~~--KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
|++. +|.|||+|-+|.++|+.|...++ ++.++++.+
T Consensus 1 m~~~~~dVlIvGaG~aGl~lA~~L~r~G~-~v~v~E~~~ 38 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGH-SVTVVERAA 38 (388)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEECCC
T ss_conf 99899858999928899999999986799-899990899
No 339
>PRK10083 putative dehydrogenase; Provisional
Probab=93.22 E-value=0.72 Score=25.72 Aligned_cols=43 Identities=26% Similarity=0.300 Sum_probs=18.9
Q ss_pred EEEECCCCHHHHHHHHH-HCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 88714842078999988-44998656110005256899999999971987
Q gi|254781048|r 116 VICITNPLDAMVWALQK-FSGLPSHMVVGMAGILDSARFRYFLAQEFGVS 164 (320)
Q Consensus 116 ~ivvtNPvDv~~~~~~~-~sg~~~~rViG~Gt~LDs~R~~~~ia~~l~v~ 164 (320)
+++-.-|+-.++..+.+ ..|. .+||.+ |..-.|..+|+++|.+
T Consensus 165 lV~G~G~iGl~~~~~~~~~~ga--~~Vi~~----d~~~~rl~~A~~~GAd 208 (339)
T PRK10083 165 LIYGAGPVGLTIVQVLKGVYGV--KNVIVA----DRIDERLALAKESGAD 208 (339)
T ss_pred EEECCCHHHHHHHHHHHHHCCC--CEEEEE----CCCHHHHHHHHHCCCC
T ss_conf 9958765999999999985699--789993----7989999999971998
No 340
>PRK07677 short chain dehydrogenase; Provisional
Probab=93.18 E-value=0.73 Score=25.68 Aligned_cols=115 Identities=16% Similarity=0.133 Sum_probs=68.3
Q ss_pred CCCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEE--ECCCH-----------
Q ss_conf 99872899889-81368999999957998699996578812898830762054468875685--26974-----------
Q gi|254781048|r 1 MKSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLC--GTSDY----------- 66 (320)
Q Consensus 1 mk~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~--~~~d~----------- 66 (320)
||.+.+-|.|+ +.+|.++|..++..+. ++++.|+++++++....++...- .....+ -..|.
T Consensus 1 L~gK~alVTGgs~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~i~~~g----~~~~~~~~Dv~~~~~v~~~v~~~~ 75 (254)
T PRK07677 1 MKEKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP----GQVLTVQMDVRNPDDVQKMIEQID 75 (254)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCC----CCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 9529899958767899999999998799-99999699999999999998569----909999803899999999999999
Q ss_pred HHHCCCCEEEEECCCCC-CCC--CCHH---HHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 88378978999556666-765--5746---78998899----9999997654126674088714
Q gi|254781048|r 67 SDIAEADVCIVTAGIPR-KPS--MSRD---DLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 67 ~~l~~aDivVitag~~~-~~g--~~R~---dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
+.+..-|++|..||... .|- ++.. ..+..|.. ..+...+.+.+.+..|-++.++
T Consensus 76 ~~~g~iDiLVnNAg~~~~~~~~~~t~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~~G~IInis 139 (254)
T PRK07677 76 EKFGRIDALINNAAGNFICPAEDLSVNGWKSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMV 139 (254)
T ss_pred HHHCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9839988899757557788826599999999999972318899999999999828995399995
No 341
>PRK07831 short chain dehydrogenase; Provisional
Probab=93.16 E-value=0.74 Score=25.66 Aligned_cols=117 Identities=21% Similarity=0.285 Sum_probs=63.8
Q ss_pred CCEEEEE-CC-C-CHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHH-----------H
Q ss_conf 8728998-89-8-1368999999957998699996578812898830762054468875685269748-----------8
Q gi|254781048|r 3 SNKIALI-GS-G-MIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYS-----------D 68 (320)
Q Consensus 3 ~~KV~II-Ga-G-~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~-----------~ 68 (320)
+.|+++| |+ | .+|..+|..++..+. ++++.|++++++.-.+..+..............-.+|++ .
T Consensus 15 ~gKvalVTGgsg~GIG~a~a~~la~~Ga-~V~i~d~~~~~~~e~~~~~~~~~g~~~v~~~~~Dvt~~~~v~~~v~~~~~~ 93 (261)
T PRK07831 15 AGKVVVVTAAAGTGIGSATARRALEEGA-DVVISDIHERRLGETADELAAELGLGRVEGVVCDVTSEAQVDALIDAAVER 93 (261)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9984999499964789999999998799-899980877778999999998438772899975689999999999999998
Q ss_pred HCCCCEEEEECCCCCCCC---CCHH---HHHHHHH----HHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 378978999556666765---5746---7899889----99999997654126674088714
Q gi|254781048|r 69 IAEADVCIVTAGIPRKPS---MSRD---DLLADNL----KAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 69 l~~aDivVitag~~~~~g---~~R~---dll~~N~----~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
+-.-|++|..||...... ++.. ..+..|. ...+...+.+++....+.+++++
T Consensus 94 ~G~iDiLVNNAG~~~~~~~~e~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~~~gG~Iinis 155 (261)
T PRK07831 94 LGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRAAPHGGVIVNNA 155 (261)
T ss_pred HCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 29986999888668998814499999999861321519999999999999769997898454
No 342
>pfam02629 CoA_binding CoA binding domain. This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.
Probab=93.12 E-value=0.75 Score=25.62 Aligned_cols=88 Identities=15% Similarity=0.133 Sum_probs=52.7
Q ss_pred CCCEEEEECCCCHHHHHHHHH-HHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHH-C--CCCEEEE
Q ss_conf 987289988981368999999-95799869999657881289883076205446887568526974883-7--8978999
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLA-VLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDI-A--EADVCIV 77 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~-~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l-~--~aDivVi 77 (320)
|.+||.++|+|+.|..++|-. ...+..=..++|.++++.-....+ ..+. ++.+++ + +.|+.|+
T Consensus 2 ~~~~v~liG~g~lG~al~~~~~~~~~~~i~~vfdv~p~~~G~~i~g-----------ipv~--~~l~~~~~~~~idiaii 68 (96)
T pfam02629 2 KDTKVAVIGASGLGIQGLYHFIQLLGYGIKMVFGVNPRKGGTEVGG-----------IPVY--KSVDELEEDTGVDVAVI 68 (96)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEECC-----------EEEE--CCHHHHHHCCCCCEEEE
T ss_conf 9774999998982788877688771486189980692427758889-----------9843--10877741558878999
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 55666676557467899889999999976541266740887
Q gi|254781048|r 78 TAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVIC 118 (320)
Q Consensus 78 tag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~iv 118 (320)
+. | .+...+.+..+.+.+=++++.+
T Consensus 69 ~V--P--------------~~~a~~~~~~~v~~GIk~i~nf 93 (96)
T pfam02629 69 TV--P--------------APFAQEAIDELVDAGIKGIVNI 93 (96)
T ss_pred EE--C--------------HHHHHHHHHHHHHCCCCEEEEE
T ss_conf 94--7--------------8998999999998699899994
No 343
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=93.07 E-value=0.51 Score=26.68 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=8.2
Q ss_pred CEEEEECCCCHHHHHHHH
Q ss_conf 728998898136899999
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHL 21 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~ 21 (320)
++|+|||.|++|+.+|-.
T Consensus 143 kTvGIiG~G~IG~~va~~ 160 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKR 160 (324)
T ss_pred CEEEEECCCHHHHHHHHH
T ss_conf 889998987899999999
No 344
>pfam01370 Epimerase NAD dependent epimerase/dehydratase family. This family of proteins utilize NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions.
Probab=93.05 E-value=0.77 Score=25.56 Aligned_cols=158 Identities=16% Similarity=0.158 Sum_probs=80.3
Q ss_pred EEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHH----HCC--CCEEEEE
Q ss_conf 899889-813689999999579986999965788128988307620544688756852697488----378--9789995
Q gi|254781048|r 6 IALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSD----IAE--ADVCIVT 78 (320)
Q Consensus 6 V~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~----l~~--aDivVit 78 (320)
|-|.|+ |.+|+.++..++.++. ++..+++......-... . ...........|.+. +++ .|+|+-.
T Consensus 1 ILItGasGfiG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~---~----~~~~~~~~dl~~~~~~~~~~~~~~~D~Vihl 72 (235)
T pfam01370 1 ILVTGGTGFIGSALVRRLLQEGY-EVIVLGRRRRSESLNTG---R----IRFRFHEGDLTDPDALERLLAEVQPDAVIHL 72 (235)
T ss_pred EEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCHHHHHHC---C----CCCEEEEEECCCHHHHHHHHHHCCCCEEEEC
T ss_conf 79972897999999999997879-89999899730122211---4----6765999658899999999853899899989
Q ss_pred CCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHH------HHHHHCCCCHHHHHHHCCCHHH
Q ss_conf 5666676--5574678998899999999765412667408871484207899------9988449986561100052568
Q gi|254781048|r 79 AGIPRKP--SMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVW------ALQKFSGLPSHMVVGMAGILDS 150 (320)
Q Consensus 79 ag~~~~~--g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~------~~~~~sg~~~~rViG~Gt~LDs 150 (320)
|+....+ ..+..+.+..|......+.+.+.+.+.. .++.+|-- ..| ...+.+-+.|.-..|. +-+..
T Consensus 73 Aa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~~~-~~I~~SS~---~vYg~~~~~~~~E~~~~~p~~~Y~~-sK~~~ 147 (235)
T pfam01370 73 AAQSGVGASFEDPAEFIRANVLGTLNLLEAARRAGVK-RFVFASSS---EVYGDVADPPITEDTPLGPLSPYAA-AKLAG 147 (235)
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEECCC---EEECCCCCCCCCCCCCCCCCCHHHH-HHHHH
T ss_conf 7747832655199999999999999999999983999-89992563---5747999999777778898507999-99999
Q ss_pred HHHHHHHHHHCCCCCCCCE-EEEECCC
Q ss_conf 9999999997198733550-5675078
Q gi|254781048|r 151 ARFRYFLAQEFGVSVESVT-ALVLGSH 176 (320)
Q Consensus 151 ~R~~~~ia~~l~v~~~~V~-~~ViGeH 176 (320)
-++-...++..+++...+. ..|.|.+
T Consensus 148 E~~~~~~~~~~~~~~~ilR~~~vyGp~ 174 (235)
T pfam01370 148 ERLVLAYARAYGLRAVILRLFNVYGPG 174 (235)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 999999999848898650012598899
No 345
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.97 E-value=0.31 Score=28.09 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=30.9
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 9872899889813689999999579986999965
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDI 35 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~ 35 (320)
+..|+.++|+|.+|..++-+++..+..++++.|+
T Consensus 22 ~~~~v~v~G~G~vg~~ia~ll~~~~~k~V~~~d~ 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEECCC
T ss_conf 6758999778604289999999817970787155
No 346
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.96 E-value=0.79 Score=25.47 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=46.4
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCC-----------EEEEEECCCCCHHHHHHH--HH---HHCCCCCCCCEEEECCCH
Q ss_conf 87289988981368999999957998-----------699996578812898830--76---205446887568526974
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLG-----------DVVLLDIVDGMPRGKALD--IA---ESSPVEGFGAQLCGTSDY 66 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~-----------ei~L~D~~~~~~~g~~~D--l~---~~~~~~~~~~~v~~~~d~ 66 (320)
.+||+|||+|--|-++|+-|...+.. -+..|-|-+=|+.-.+.| ++ +.=.-+..+..+-..-++
T Consensus 310 gkKVAVIGsGPAGLaaA~~Lar~G~~VTVfE~~~~~GGlL~yGIP~fRLPK~vv~rei~~l~~lGV~f~~n~~VGkDit~ 389 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITF 389 (639)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCEECCCCCH
T ss_conf 99899989758999999999975990699936888898685358745277789999999998649889919677986889
Q ss_pred HHH-CCCCEEEEECCC
Q ss_conf 883-789789995566
Q gi|254781048|r 67 SDI-AEADVCIVTAGI 81 (320)
Q Consensus 67 ~~l-~~aDivVitag~ 81 (320)
++| ++-|-|+++.|.
T Consensus 390 ~eL~~~yDAVflg~Ga 405 (639)
T PRK12809 390 SDLTSEYDAVFIGVGT 405 (639)
T ss_pred HHHHHHCCEEEEEECC
T ss_conf 9997317989997367
No 347
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase; InterPro: IPR011912 Lipopolysaccharides (LPS) are glycolipids that consitutes the outer monolayer of the outer membranes of most Gram-negative bacteria . They consist of lipid A (endotoxin) which anchors LPS to the outer membrane, a non-repeating core oligosachharide, and an immunogenic O-antigen repeat polymer, which is an oligosaccharide of 1-40 units that variesbetween different strains of bacteria. Although the O-antigen and most of the core domain are not necessary for growth in the lab, they appear to help bacteria resist environmental stresses including the complement system and antibiotics. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of LPS in Gram-negative bacteria . This enzyme is homologous to UDP-glucose 4-epimerase (IPR005886 from INTERPRO) and belongs to the NAD dependent epimerase/dehydratase family. It participates in the biosynthetic pathway leading to incorporation of heptose, a conserved sugar, into the core region of LPS, performing the reaction shown below: ADP-D-glycero-D-manno-heptose = ADP-L-glycero-D-manno-heptose It is a homopentameric enzyme with each monomer composed of two domains: an N-terminal modified Rossman fold domain for NADP binding, and a C-terminal substrate binding domain.; GO: 0008712 ADP-glyceromanno-heptose 6-epimerase activity, 0050661 NADP binding, 0005975 carbohydrate metabolic process.
Probab=92.96 E-value=0.35 Score=27.73 Aligned_cols=113 Identities=12% Similarity=0.169 Sum_probs=69.6
Q ss_pred EEEEC-CCCHHHHHHHHHHHCC-CCEEEEEECCCC---CHH------HH---HHHHHHH--CCCCCCCCEEEECCCH-HH
Q ss_conf 89988-9813689999999579-986999965788---128------98---8307620--5446887568526974-88
Q gi|254781048|r 6 IALIG-SGMIGGTLAHLAVLKK-LGDVVLLDIVDG---MPR------GK---ALDIAES--SPVEGFGAQLCGTSDY-SD 68 (320)
Q Consensus 6 V~IIG-aG~VG~~~a~~~~~~~-l~ei~L~D~~~~---~~~------g~---~~Dl~~~--~~~~~~~~~v~~~~d~-~~ 68 (320)
|-|.| ||.||+.++..|-.++ .+||+.+|.-.+ ... |+ =+-|.+. +.+.+...-...-..- ++
T Consensus 1 IiVTGGAGFIGSNlv~~LN~~gP~~dI~vvD~L~~~~~F~ng~~~slg~~kk~~Nl~~~~I~d~i~k~~~~~~l~~~~~~ 80 (353)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGPETDILVVDNLRDDATFENGNPQSLGHFKKFLNLADLEIADYIDKDDLLDRLEKGSEA 80 (353)
T ss_pred CEECCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCC
T ss_conf 95506763689999999964389542888740787552467774322342443255541121335885469999830201
Q ss_pred HCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 3789789995566667655746789988999999997654126674088714
Q gi|254781048|r 69 IAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 69 l~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
+.+-|+|+=-+....+--.+-.=+++.|-...+.+.+.+.+. +.-+|-+|
T Consensus 81 ~~~~~avfH~GAcS~TTe~D~~~~m~nN~~ys~~Ll~~c~~~--~~~~IYAS 130 (353)
T TIGR02197 81 LGKIEAVFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEK--GVPFIYAS 130 (353)
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCEEEEC
T ss_conf 388337997331253588627999988999999999999964--89868850
No 348
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=92.89 E-value=0.62 Score=26.17 Aligned_cols=37 Identities=30% Similarity=0.362 Sum_probs=30.8
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHH
Q ss_conf 28998898136899999995799869999657881289
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRG 42 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g 42 (320)
||++||.|..|..+|.-++..+. ++..+|+++++++.
T Consensus 2 kIGfIGLG~MG~~mA~nL~~~G~-~V~v~d~~~~~~~~ 38 (298)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEAVDV 38 (298)
T ss_pred EEEEECHHHHHHHHHHHHHHCCC-EEEEECCCHHHHHH
T ss_conf 79998346768999999997799-48998499899999
No 349
>PRK07062 short chain dehydrogenase; Provisional
Probab=92.88 E-value=0.81 Score=25.41 Aligned_cols=115 Identities=15% Similarity=0.202 Sum_probs=65.2
Q ss_pred CEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCC---CCCCCCEEEECCCH--------HHHC
Q ss_conf 728998-89-81368999999957998699996578812898830762054---46887568526974--------8837
Q gi|254781048|r 4 NKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSP---VEGFGAQLCGTSDY--------SDIA 70 (320)
Q Consensus 4 ~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~---~~~~~~~v~~~~d~--------~~l~ 70 (320)
.|+++| |+ +.+|..+|..++..+ +++++.|++++++...+.++...-. .......+....+. +.+-
T Consensus 8 gK~alITG~s~GIG~a~a~~la~~G-a~Vvi~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvt~~~~v~~~v~~~~~~~G 86 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAG-ASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG 86 (265)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 9989995757799999999999879-999999798899999999998736996599997579999999999999999839
Q ss_pred CCCEEEEECCCCCCCC---CCHHH---HHHHHH----HHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 8978999556666765---57467---899889----99999997654126674088714
Q gi|254781048|r 71 EADVCIVTAGIPRKPS---MSRDD---LLADNL----KAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 71 ~aDivVitag~~~~~g---~~R~d---ll~~N~----~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
.-|++|-.||...... .+..+ .++.|. ...+...+.+++. ..|-+|+++
T Consensus 87 ~iDiLVnNAg~~~~~~~~~~~~e~w~~~~~~nl~~~~~~~~~~~p~m~~~-~~G~IInis 145 (265)
T PRK07062 87 GVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVIRPTRAFLPLLRAS-AAPSITCVN 145 (265)
T ss_pred CCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEE
T ss_conf 98889977888898884879999999999872145899999999999962-996299993
No 350
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=92.81 E-value=0.83 Score=25.34 Aligned_cols=83 Identities=25% Similarity=0.394 Sum_probs=49.1
Q ss_pred CCEEEEEC-CCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCC
Q ss_conf 87289988-98136899999995799869999657881289883076205446887568526974883789789995566
Q gi|254781048|r 3 SNKIALIG-SGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGI 81 (320)
Q Consensus 3 ~~KV~IIG-aG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~ 81 (320)
.+||.||| .|+.|.-.+-.+...+- ++.++|.++ ...--+.+.|||+||++.
T Consensus 98 ~~~i~IIGG~G~mG~~F~~~f~~sGy-~V~ild~~d------------------------w~~~~~~~~~advViVsV-- 150 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEKDD------------------------WDRADDILADAGMVIVSV-- 150 (374)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCC-EEEEECCCC------------------------CCCHHHHHHCCCEEEEEE--
T ss_conf 87179980798277999999996798-799616444------------------------534898871799899981--
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC----CCCHHH
Q ss_conf 667655746789988999999997654126674088714----842078
Q gi|254781048|r 82 PRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICIT----NPLDAM 126 (320)
Q Consensus 82 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvt----NPvDv~ 126 (320)
|. .....+++++ ....+++++.=+| -|+..|
T Consensus 151 PI----------~~T~~VI~~l----~~l~~~~lL~DiTSvK~~Pl~aM 185 (374)
T PRK11199 151 PI----------HLTEEVIEKL----PPLPEDCILVDLTSVKNGPLQAM 185 (374)
T ss_pred CH----------HHHHHHHHHC----CCCCCCCEEEECHHCCHHHHHHH
T ss_conf 45----------8899999857----78999868986100427899999
No 351
>PRK08013 hypothetical protein; Provisional
Probab=92.76 E-value=0.23 Score=28.90 Aligned_cols=35 Identities=31% Similarity=0.415 Sum_probs=30.0
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 998728998898136899999995799869999657
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIV 36 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~ 36 (320)
||+.-|.|+|+|-||.++|..+...++ .+.++|..
T Consensus 1 M~~~DV~IvGaGpvGl~lA~~La~~G~-~v~viE~~ 35 (400)
T PRK08013 1 MQSVDVAIVGGGMVGLAVACGLQGSGL-RVAVLEHR 35 (400)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
T ss_conf 996788999935999999999971899-58999189
No 352
>PRK07063 short chain dehydrogenase; Provisional
Probab=92.73 E-value=0.85 Score=25.27 Aligned_cols=114 Identities=24% Similarity=0.309 Sum_probs=65.6
Q ss_pred EEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCC--CCCCCCEEEECCCH--------HHHCCC
Q ss_conf 28998-89-81368999999957998699996578812898830762054--46887568526974--------883789
Q gi|254781048|r 5 KIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSP--VEGFGAQLCGTSDY--------SDIAEA 72 (320)
Q Consensus 5 KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~--~~~~~~~v~~~~d~--------~~l~~a 72 (320)
|+++| |+ +.+|..+|..++..+ +.+++.|+++++++-.+.++..... .......+....+. +.+-.-
T Consensus 8 KvalVTGa~~GIG~aiA~~~a~~G-a~V~i~~~~~~~~~~~~~~l~~~~g~~~~~~~~Dvt~~~~v~~~v~~~~~~~G~i 86 (259)
T PRK07063 8 KVALVTGAAQGIGAAIARAFVREG-AAVALADLDAALAERAAAAIARQTGARVLALPADVTRAASVRAAVARAEAAFGPL 86 (259)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 889995878789999999999879-9899997987899999999988509918999836899999999999999981998
Q ss_pred CEEEEECCCCCCCC---CCHH---HHHHHHHHH----HHHHHHHHHHCCCCCCEEEEC
Q ss_conf 78999556666765---5746---789988999----999997654126674088714
Q gi|254781048|r 73 DVCIVTAGIPRKPS---MSRD---DLLADNLKA----IEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 73 DivVitag~~~~~g---~~R~---dll~~N~~i----~~~i~~~i~~~~p~~i~ivvt 120 (320)
|++|-.||...... ++.. ..+..|..= .+...+.+.+.+ .|-+++++
T Consensus 87 DiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~f~~~~~~~p~m~~~~-~G~IVnis 143 (259)
T PRK07063 87 DVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNCCRAVLPGMVERG-RGSIVNIA 143 (259)
T ss_pred CEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEC
T ss_conf 8999899778999904499999999998752889999999999999869-96699987
No 353
>PRK08163 salicylate hydroxylase; Provisional
Probab=92.72 E-value=0.26 Score=28.63 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=30.7
Q ss_pred CCC-CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 998-728998898136899999995799869999657881
Q gi|254781048|r 1 MKS-NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGM 39 (320)
Q Consensus 1 mk~-~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~ 39 (320)
|+. .+|.|||+|-+|-++|+.|...++ ++.++++.++.
T Consensus 1 M~~~~~V~IVGaGiaGL~lA~~L~r~Gi-~v~V~Er~~~~ 39 (396)
T PRK08163 1 MTHVTPVLIVGGGIGGLAAALALARQGI-KVKLLEQAAEI 39 (396)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-CEEEECCCCCC
T ss_conf 9899849998978899999999997899-99999179988
No 354
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=92.66 E-value=0.86 Score=25.21 Aligned_cols=79 Identities=20% Similarity=0.134 Sum_probs=44.9
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCC----E-------EEEEECCCCCHHHHHHH--HHHHC---CCCCCCCEEEECCCH
Q ss_conf 87289988981368999999957998----6-------99996578812898830--76205---446887568526974
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLG----D-------VVLLDIVDGMPRGKALD--IAESS---PVEGFGAQLCGTSDY 66 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~----e-------i~L~D~~~~~~~g~~~D--l~~~~---~~~~~~~~v~~~~d~ 66 (320)
..||+|||+|--|-++|+-|+..+.. | +.-|-|-+-|+--...| ++... .-...+..+-..-+.
T Consensus 439 GkKVAVIGsGPAGLsaA~~La~~G~~VtVFE~~~~~GG~L~yGIP~fRLPk~iv~~eI~~l~~lGV~~~~n~~vGkdit~ 518 (760)
T PRK12778 439 GIKVAVIGSGPAGLSFAGDMAKYGYDVTVFEALHEIGGVLKYGIPEFRLPNKIVDVEIENLVKMGVTFEKDCIVGKTISV 518 (760)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECCCCCH
T ss_conf 99899989778999999999977990699805888897576548611087899999999998649799899577886899
Q ss_pred HHHC--CCCEEEEECCC
Q ss_conf 8837--89789995566
Q gi|254781048|r 67 SDIA--EADVCIVTAGI 81 (320)
Q Consensus 67 ~~l~--~aDivVitag~ 81 (320)
++|+ +-|-|+++.|.
T Consensus 519 ~eL~~egyDAVfla~Ga 535 (760)
T PRK12778 519 EELEEEGFKGIFVASGA 535 (760)
T ss_pred HHHHHCCCCEEEEECCC
T ss_conf 99975889999994067
No 355
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=92.58 E-value=0.28 Score=28.44 Aligned_cols=107 Identities=21% Similarity=0.304 Sum_probs=58.2
Q ss_pred CCEEEEECCCCHHH-HHHHHHHHCCCC--------EEEEEECCCCCHHH--HHHHHHHHCCCCCCCCEEEECCCHHHHCC
Q ss_conf 87289988981368-999999957998--------69999657881289--88307620544688756852697488378
Q gi|254781048|r 3 SNKIALIGSGMIGG-TLAHLAVLKKLG--------DVVLLDIVDGMPRG--KALDIAESSPVEGFGAQLCGTSDYSDIAE 71 (320)
Q Consensus 3 ~~KV~IIGaG~VG~-~~a~~~~~~~l~--------ei~L~D~~~~~~~g--~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~ 71 (320)
+.||.++|.+.||. ++......+... +.....+. ..| ..+++.|++-...+.. -.+.-.++
T Consensus 1 r~KivllGd~~VGKTsLi~r~~~~~f~~~y~pTi~~~~~~~i~---v~~~~v~l~iwDTaG~e~~~~-----~~~~~~~~ 72 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCR---VDGKPVQLALWDTAGQEEYER-----LRPLSYSK 72 (187)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEE---ECCEEEEEEEEECCCCCCCCC-----CCCCEECC
T ss_conf 9199999989976899999998298999878866789899999---999999999997888703454-----60412338
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHH
Q ss_conf 9789995566667655746789988999999997654126674088714842078
Q gi|254781048|r 72 ADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAM 126 (320)
Q Consensus 72 aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~ 126 (320)
||++++.-....+ +-++ |++ ....+.+.+++|+.-+++|.|-+|.-
T Consensus 73 a~~~ilvydi~~~------~Sf~-~~~--~~w~~~~~~~~~~~piilVGnK~DL~ 118 (187)
T cd04129 73 AHVILIGFAVDTP------DSLE-NVR--TKWIEEVRRYCPNVPVILVGLKKDLR 118 (187)
T ss_pred CCEEEEECCCCCH------HHHH-HHH--HHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 8589997026986------6799-999--99999999858799889998860011
No 356
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=92.58 E-value=0.89 Score=25.14 Aligned_cols=67 Identities=21% Similarity=0.309 Sum_probs=42.1
Q ss_pred EEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEE--CCC----HHHHCCCCEEEEE
Q ss_conf 899889-813689999999579986999965788128988307620544688756852--697----4883789789995
Q gi|254781048|r 6 IALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCG--TSD----YSDIAEADVCIVT 78 (320)
Q Consensus 6 V~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~--~~d----~~~l~~aDivVit 78 (320)
|.|+|+ |++|+.++..|+..+ .++..+.++.++..... +... ...+.. ..| .++++|+|.|+.+
T Consensus 1 IlV~GatG~iG~~vv~~L~~~g-~~Vr~l~R~~~~~~~~~--l~~~------gve~v~gD~~d~~sl~~al~gvd~v~~~ 71 (232)
T pfam05368 1 ILVFGATGYQGGSVVRASLKAG-HPVRALVRDPKSELAKS--LKAA------GVELVEGDLDDHESLVEALKGVDVVFSV 71 (232)
T ss_pred EEEECCCHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHHH--HHHC------CCEEEEECCCCHHHHHHHHCCCCEEEEE
T ss_conf 0998968289999999998589-93899971873665666--6417------9889990688878999996799889991
Q ss_pred CCC
Q ss_conf 566
Q gi|254781048|r 79 AGI 81 (320)
Q Consensus 79 ag~ 81 (320)
.+.
T Consensus 72 ~~~ 74 (232)
T pfam05368 72 TGF 74 (232)
T ss_pred CCC
T ss_conf 588
No 357
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=92.54 E-value=0.9 Score=25.11 Aligned_cols=167 Identities=16% Similarity=0.100 Sum_probs=84.1
Q ss_pred EEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCC-HHHHCCC-CEEEEECCC
Q ss_conf 2899889-813689999999579986999965788128988307620544688756852697-4883789-789995566
Q gi|254781048|r 5 KIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSD-YSDIAEA-DVCIVTAGI 81 (320)
Q Consensus 5 KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d-~~~l~~a-DivVitag~ 81 (320)
+|-|+|+ |.||+.++..++..+ -++..+|+......... .+.. +.. ..+..... .+.++++ |.|+-.|+.
T Consensus 2 ~iLVtG~tGfiG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~---~~~~-~~~--~d~~~~~~~~~~~~~~~d~vih~aa~ 74 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAG-HDVRGLDRLRDGLDPLL---SGVE-FVV--LDLTDRDLVDELAKGVPDAVIHLAAQ 74 (314)
T ss_pred EEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCC---CCCC-EEE--CCCCCHHHHHHHHCCCCCEEEECCCC
T ss_conf 69999288777999999998589-97999917875431124---6764-342--25335678998854588789988864
Q ss_pred CCCCCCCH---HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHH----HHHHH-CC-CCHHHHHHHCCCHHHHH
Q ss_conf 66765574---678998899999999765412667408871484207899----99884-49-98656110005256899
Q gi|254781048|r 82 PRKPSMSR---DDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVW----ALQKF-SG-LPSHMVVGMAGILDSAR 152 (320)
Q Consensus 82 ~~~~g~~R---~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~----~~~~~-sg-~~~~rViG~Gt~LDs~R 152 (320)
...++..+ .+....|..-.+.+.+...+.+ ...++..|.-.-.-.. .+.+. +. .|.+ -.|. +-+..-+
T Consensus 75 ~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~-~~~~v~~ss~~~~~~~~~~~~~~E~~~~~~p~~-~Yg~-sK~~~E~ 151 (314)
T COG0451 75 SSVPDSNASDPAEFLDVNVDGTLNLLEAARAAG-VKRFVFASSVSVVYGDPPPLPIDEDLGPPRPLN-PYGV-SKLAAEQ 151 (314)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEECCCCEECCCCCCCCCCCCCCCCCCCC-HHHH-HHHHHHH
T ss_conf 677533321478899999999999999998679-987999787501278878888786557888876-7799-9999999
Q ss_pred HHHHHHHHCCCCCCCCE-EEEECCCCCEEE
Q ss_conf 99999997198733550-567507885246
Q gi|254781048|r 153 FRYFLAQEFGVSVESVT-ALVLGSHGDSMV 181 (320)
Q Consensus 153 ~~~~ia~~l~v~~~~V~-~~ViGeHGds~v 181 (320)
.-...++..+++...+. +.|+|.+....+
T Consensus 152 ~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~ 181 (314)
T COG0451 152 LLRAYARLYGLPVVILRPFNVYGPGDKPDL 181 (314)
T ss_pred HHHHHHHHCCCCEEEEEECEEECCCCCCCC
T ss_conf 999976633995799984637888987774
No 358
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.53 E-value=0.7 Score=25.80 Aligned_cols=127 Identities=18% Similarity=0.177 Sum_probs=64.1
Q ss_pred EEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCH-HHHHHHHHHH--CCCCCCCCEEEECCCHHHHCCCCEEEEECCCCC
Q ss_conf 9988981368999999957998699996578812-8988307620--544688756852697488378978999556666
Q gi|254781048|r 7 ALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMP-RGKALDIAES--SPVEGFGAQLCGTSDYSDIAEADVCIVTAGIPR 83 (320)
Q Consensus 7 ~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~-~g~~~Dl~~~--~~~~~~~~~v~~~~d~~~l~~aDivVitag~~~ 83 (320)
.|+|.|.-|.++|..+..++ .++...|..+... ......|+.. ....++... .......+.++|+||.+.|.|.
T Consensus 4 ~V~GlG~sG~s~a~~L~~~G-~~v~~~D~~~~~~~~~~~~~L~~~gi~~~~g~~~~--~~~~~~~~~~~d~vV~SPGI~~ 80 (459)
T PRK02705 4 HVIGLGRSGIAAARLLKAQG-WEVVVSERNDSPELLERQQELEQEGITVELGKPLE--LESFQPWLDQPDLVVVSPGIPW 80 (459)
T ss_pred EEEEECHHHHHHHHHHHHCC-CEEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCC--CCCHHHHCCCCCEEEECCCCCC
T ss_conf 99954899999999999789-95999989899234789999987598698167666--4301331167888998996499
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE--CCCCHH---HHHHHHHHCCCCH
Q ss_conf 765574678998899999999765412667408871--484207---8999988449986
Q gi|254781048|r 84 KPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICI--TNPLDA---MVWALQKFSGLPS 138 (320)
Q Consensus 84 ~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~~ 138 (320)
..-. -....+.+.+|+.++--.. +...+..+|-| ||==-+ |...+.+..|+..
T Consensus 81 ~~p~-~~~a~~~gi~i~~eiel~~-~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~ 138 (459)
T PRK02705 81 DHPT-LVELREKGIEVIGEMELAW-RALKHIPWVGITGTNGKTTVTHLLAHILQAAGLNA 138 (459)
T ss_pred CCHH-HHHHHHCCCCEECHHHHHH-HHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 8999-9999987997214999999-98504975777178972789999999999839985
No 359
>PRK06753 hypothetical protein; Provisional
Probab=92.50 E-value=0.22 Score=29.11 Aligned_cols=34 Identities=32% Similarity=0.388 Sum_probs=28.3
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 28998898136899999995799869999657881
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGM 39 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~ 39 (320)
||.|||+|-+|-++|..+...++ ++.+|++..+.
T Consensus 2 kV~IVGaGiaGL~~A~~L~~~G~-~v~V~Er~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGH-TVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-CEEEECCCCCC
T ss_conf 89999945899999999997799-99998889998
No 360
>pfam01266 DAO FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Probab=92.50 E-value=0.2 Score=29.31 Aligned_cols=32 Identities=31% Similarity=0.463 Sum_probs=27.7
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 289988981368999999957998699996578
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
+|.|||+|-+|.++||-++..+. ++.++|...
T Consensus 1 dv~IIGaGi~Gls~A~~La~~G~-~V~vie~~~ 32 (309)
T pfam01266 1 DVVVIGGGIVGLSTAYELARRGL-SVTLLERGD 32 (309)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEECCCC
T ss_conf 99999927999999999997899-599994999
No 361
>PRK10206 putative dehydrogenase; Provisional
Probab=92.49 E-value=0.56 Score=26.41 Aligned_cols=67 Identities=18% Similarity=0.112 Sum_probs=40.8
Q ss_pred CCEEEEECCCCHHHHH--HHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHH-C--CCCEEEE
Q ss_conf 8728998898136899--999995799869999657881289883076205446887568526974883-7--8978999
Q gi|254781048|r 3 SNKIALIGSGMIGGTL--AHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDI-A--EADVCIV 77 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~--a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l-~--~aDivVi 77 (320)
.-|++|||.|..|... -+++...+..++..+....++++..+.+. + ..+ ...||+++ + +-|+|+|
T Consensus 2 ~irvaiiG~G~~~~~fH~P~i~~~~~~~~v~~v~~~~~~~~~~a~~~-------~-~~~--~~~~~~~ll~~~~id~V~i 71 (345)
T PRK10206 2 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIY-------S-HIH--FTSDLDEVLNDPDVKLVVV 71 (345)
T ss_pred EEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHC-------C-CCC--EECCHHHHHCCCCCCEEEE
T ss_conf 24799992649999998999963899579999978876188888776-------9-981--2289999954999999998
Q ss_pred EC
Q ss_conf 55
Q gi|254781048|r 78 TA 79 (320)
Q Consensus 78 ta 79 (320)
+.
T Consensus 72 ~t 73 (345)
T PRK10206 72 CT 73 (345)
T ss_pred CC
T ss_conf 79
No 362
>PRK06834 hypothetical protein; Provisional
Probab=92.49 E-value=0.28 Score=28.36 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=31.0
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 9987289988981368999999957998699996578
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
|....|.|||+|-||.++|.+|...++. .+++|...
T Consensus 1 M~~~dVlIVGaGPvGL~lA~~La~~Gi~-v~viE~~~ 36 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELALAGVD-VAIVERRV 36 (488)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEECCC
T ss_conf 9989899989388999999999976999-99996899
No 363
>pfam02882 THF_DHG_CYH_C Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain.
Probab=92.48 E-value=0.54 Score=26.55 Aligned_cols=55 Identities=27% Similarity=0.395 Sum_probs=37.9
Q ss_pred CCCEEEEECCCC-HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEEEC
Q ss_conf 987289988981-36899999995799869999657881289883076205446887568526974-8837897899955
Q gi|254781048|r 2 KSNKIALIGSGM-IGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIVTA 79 (320)
Q Consensus 2 k~~KV~IIGaG~-VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVita 79 (320)
+.+++.|||.++ ||..++.++..++. .+.+.+. .+.|. +.+++|||+|.++
T Consensus 35 ~Gk~vvViGrS~iVG~Pla~lL~~~~a-tVtichs--------------------------~T~nl~~~~~~ADIvI~A~ 87 (159)
T pfam02882 35 AGKNVVVIGRSNIVGKPLALLLLNANA-TVTVCHS--------------------------KTKDLAEITREADIVVVAV 87 (159)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEECC--------------------------CCCCHHHHHHCCCEEEEEC
T ss_conf 786699988873148999999987799-8999818--------------------------9999789630034442315
Q ss_pred CCCC
Q ss_conf 6666
Q gi|254781048|r 80 GIPR 83 (320)
Q Consensus 80 g~~~ 83 (320)
|.|.
T Consensus 88 G~p~ 91 (159)
T pfam02882 88 GKPG 91 (159)
T ss_pred CCCC
T ss_conf 8855
No 364
>PRK06523 short chain dehydrogenase; Provisional
Probab=92.44 E-value=0.85 Score=25.28 Aligned_cols=125 Identities=14% Similarity=0.120 Sum_probs=63.4
Q ss_pred CCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHH-----HHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEE
Q ss_conf 872899889-81368999999957998699996578812898-----830762054468875685269748837897899
Q gi|254781048|r 3 SNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGK-----ALDIAESSPVEGFGAQLCGTSDYSDIAEADVCI 76 (320)
Q Consensus 3 ~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~-----~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivV 76 (320)
.+++-|.|+ +.+|..+|..++..+ +++++.+++.....+. ..|+.+-.. ..-....-.+.+..-|++|
T Consensus 9 gK~alITG~s~GIG~aia~~la~~G-a~V~~~~r~~~~~~~~~~~~~~~Dv~~~~~-----v~~~v~~~~~~~g~iDiLV 82 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARFREAG-ARVVTTARSRPDDLPEGVEFVAADLTTAEG-----CAAVARAVLERLGGVDILV 82 (260)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCEEEECCCCCHHH-----HHHHHHHHHHHCCCCCEEE
T ss_conf 9989994757699999999999879-999999488401379862899837999999-----9999999999749997999
Q ss_pred EECCCCCCCC-----CCHHH---HHHHHHH----HHHHHHHHHHHCCCCCCEEEEC----CCC--HHHHHHHHHH
Q ss_conf 9556666765-----57467---8998899----9999997654126674088714----842--0789999884
Q gi|254781048|r 77 VTAGIPRKPS-----MSRDD---LLADNLK----AIEKVGAGIRKYAPNSFVICIT----NPL--DAMVWALQKF 133 (320)
Q Consensus 77 itag~~~~~g-----~~R~d---ll~~N~~----i~~~i~~~i~~~~p~~i~ivvt----NPv--Dv~~~~~~~~ 133 (320)
..||..+.+. .+..+ .++.|.. +.+.+.+.+.+.+.-.++.+.| .|. ....|-+.|.
T Consensus 83 nNAG~~~~~~~~~~~~~~~~w~~~~~~Nl~~~~~~~q~~~p~m~~~~~G~IinisS~~~~~~~~~~~~~Y~asKa 157 (260)
T PRK06523 83 HVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPAMIARGSGVIIHVTSIQRRLPLPESTTAYAAAKA 157 (260)
T ss_pred ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCCCCHHHHHHHH
T ss_conf 899887679988031999999999999849999999999999998399866999552214688865088999999
No 365
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=92.42 E-value=0.29 Score=28.28 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=30.8
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCC-CEEEEEECC
Q ss_conf 998728998898136899999995799-869999657
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKL-GDVVLLDIV 36 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l-~ei~L~D~~ 36 (320)
|+++||.|||+|.-|.++|..+-..+- .+|.++...
T Consensus 1 M~~~~iVIIG~G~AG~~aA~~lR~~g~~g~Itli~~E 37 (400)
T PRK09754 1 MKEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDE 37 (400)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 9967299997759999999999806949979999899
No 366
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=92.41 E-value=0.79 Score=25.48 Aligned_cols=107 Identities=20% Similarity=0.298 Sum_probs=57.6
Q ss_pred CCEEEEECCCCHHHH-HHHHHHHCCCCE--------EEE--EECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCC
Q ss_conf 872899889813689-999999579986--------999--965788128988307620544688756852697488378
Q gi|254781048|r 3 SNKIALIGSGMIGGT-LAHLAVLKKLGD--------VVL--LDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAE 71 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~-~a~~~~~~~l~e--------i~L--~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~ 71 (320)
+.||.++|.+.||.+ +......+...+ ... +.++... ..+.|.|++-... ...-...-.++
T Consensus 1 r~Ki~liGd~~VGKTsli~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~---v~l~iwDtaG~e~-----~~~~~~~~~~~ 72 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQ---VELALWDTAGQED-----YDRLRPLSYPD 72 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCEE---EEEEEEECCCCCC-----CCCCHHHHHCC
T ss_conf 909999998996699999999709899984784368999999999999---9999997776613-----23240443148
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHH
Q ss_conf 9789995566667655746789988999999997654126674088714842078
Q gi|254781048|r 72 ADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAM 126 (320)
Q Consensus 72 aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~ 126 (320)
||.+++.-.... |.. ++ |. .....+.+..++|+.-+++|.|=+|..
T Consensus 73 a~~~ilvydi~~-----~~S-f~-~~--~~~w~~~i~~~~~~~piilVgnK~DL~ 118 (175)
T cd01870 73 TDVILMCFSIDS-----PDS-LE-NI--PEKWTPEVKHFCPNVPIILVGNKKDLR 118 (175)
T ss_pred CCEEEEEEECCC-----HHH-HH-HH--HHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 878999986598-----799-99-99--999999999729899899998724334
No 367
>KOG2013 consensus
Probab=92.19 E-value=0.23 Score=28.89 Aligned_cols=36 Identities=28% Similarity=0.492 Sum_probs=32.0
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 987289988981368999999957998699996578
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
+..||-++|||.+|-.+.-.+++.++.+|.++|.+.
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDT 46 (603)
T KOG2013 11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDT 46 (603)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCC
T ss_conf 067189990573219999999982677057973253
No 368
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.18 E-value=0.99 Score=24.83 Aligned_cols=116 Identities=18% Similarity=0.201 Sum_probs=66.5
Q ss_pred CEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCC-CCCCCCEEEECCCH--------HHHCCC
Q ss_conf 728998-89-81368999999957998699996578812898830762054-46887568526974--------883789
Q gi|254781048|r 4 NKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSP-VEGFGAQLCGTSDY--------SDIAEA 72 (320)
Q Consensus 4 ~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~-~~~~~~~v~~~~d~--------~~l~~a 72 (320)
.|+++| |+ ..+|..+|..++..+. ++++.|+++++++..+..+++.-. ...+...+....+. +.+-.-
T Consensus 7 gKvalVTGgs~GIG~a~A~~la~~Ga-~V~i~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~v~~~~~~~G~i 85 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSV 85 (262)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99899958577899999999998799-99999798899999999999629939999815899999999999999981999
Q ss_pred CEEEEECCCCCC-CC--CCH---HHHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 789995566667-65--574---678998899----9999997654126674088714
Q gi|254781048|r 73 DVCIVTAGIPRK-PS--MSR---DDLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 73 DivVitag~~~~-~g--~~R---~dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
|++|..||.... |= .+. .+.++.|.. ..+...+.+.+..--|.+++++
T Consensus 86 DiLVnnAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~M~k~~~~G~IVnis 143 (262)
T PRK13394 86 DILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMG 143 (262)
T ss_pred CEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9999899889999916599999999999975899999999999999837996899974
No 369
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=92.15 E-value=0.35 Score=27.79 Aligned_cols=36 Identities=31% Similarity=0.576 Sum_probs=28.5
Q ss_pred CCCC--EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 9987--289988981368999999957998699996578
Q gi|254781048|r 1 MKSN--KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 1 mk~~--KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
|+.. .|.|||+|-||.++|..+...++ .+.++|...
T Consensus 1 M~~~~~DV~IvG~G~vGl~lAl~La~~G~-~V~viE~~~ 38 (391)
T PRK08020 1 MTNQPTEIAIVGGGMVGGALALGLAQHGF-SVAVIEHAA 38 (391)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEECCC
T ss_conf 99999848999936999999999986699-789994899
No 370
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=92.14 E-value=0.65 Score=26.03 Aligned_cols=106 Identities=22% Similarity=0.276 Sum_probs=59.4
Q ss_pred EEEEECCCCHHHH-HHHHHHHCCCC-E----E-EE----EECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCC
Q ss_conf 2899889813689-99999957998-6----9-99----96578812898830762054468875685269748837897
Q gi|254781048|r 5 KIALIGSGMIGGT-LAHLAVLKKLG-D----V-VL----LDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEAD 73 (320)
Q Consensus 5 KV~IIGaG~VG~~-~a~~~~~~~l~-e----i-~L----~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aD 73 (320)
||.++|.+.||.+ +......+... + + .. +.++.. -..+++.|++-...+ ..-...-.++||
T Consensus 3 KivllGd~~VGKTsL~~rf~~~~F~~~~~pTi~~~~~~~i~v~~~---~~~l~iwDTaG~e~~-----~~l~~~~y~~a~ 74 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGN---TVNLGLWDTAGQEDY-----NRLRPLSYRGAD 74 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCE---EEEEEEEECCCCCCC-----CHHHHHHHCCCC
T ss_conf 999989999779999999965989998678535899999999998---999999979997654-----246898726787
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHH
Q ss_conf 899955666676557467899889999999976541266740887148420789
Q gi|254781048|r 74 VCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMV 127 (320)
Q Consensus 74 ivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~ 127 (320)
.+++.-..- +|..+- .+.+...+.+++++|+..+++|.|=+|.-.
T Consensus 75 ~~ilvydi~-----~~~Sf~----~~~~~w~~~~~~~~~~~piilvGnK~DL~~ 119 (176)
T cd04133 75 VFVLAFSLI-----SRASYE----NVLKKWVPELRHYAPNVPIVLVGTKLDLRD 119 (176)
T ss_pred EEEEEEECC-----CHHHHH----HHHHHHHHHHHHHCCCCCEEEEEECHHHHH
T ss_conf 579999789-----878999----999999999998684998899998632021
No 371
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.05 E-value=0.53 Score=26.60 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHC
Q ss_conf 899999999971987335505675078852465102354477015543001
Q gi|254781048|r 150 SARFRYFLAQEFGVSVESVTALVLGSHGDSMVPMLRYATVSGIPVSDLVKL 200 (320)
Q Consensus 150 s~R~~~~ia~~l~v~~~~V~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~ 200 (320)
|.+.-..|-++++++.+.-++-|+| +..+-|.|+..++..
T Consensus 142 Tp~av~~lL~~y~i~~~Gk~vvVvG-----------rS~iVGkPla~lL~~ 181 (288)
T PRK10792 142 TPRGIVTLLERYNIDTFGLNAVVIG-----------ASNIVGRPMSMELLL 181 (288)
T ss_pred CHHHHHHHHHHCCCCCCCCEEEEEC-----------CCCCCCHHHHHHHHH
T ss_conf 1999999999747563788899956-----------766343899999986
No 372
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=91.98 E-value=1 Score=24.68 Aligned_cols=101 Identities=17% Similarity=0.251 Sum_probs=53.7
Q ss_pred EEEEEC-CCCHHHHHHHHHHHCCCCEEEEEECCC--CCHHHHHHHHHHHCCCCCCCCEEEECCCHHHH------CCCCEE
Q ss_conf 289988-981368999999957998699996578--81289883076205446887568526974883------789789
Q gi|254781048|r 5 KIALIG-SGMIGGTLAHLAVLKKLGDVVLLDIVD--GMPRGKALDIAESSPVEGFGAQLCGTSDYSDI------AEADVC 75 (320)
Q Consensus 5 KV~IIG-aG~VG~~~a~~~~~~~l~ei~L~D~~~--~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l------~~aDiv 75 (320)
||-|.| +|.+|++++..++.++-..++-+|... ...+.. .++.+.. ...-...-..|.+++ .+.|+|
T Consensus 2 kILVTGg~GFIGs~l~~~Ll~~~~~~v~~vd~~~~~~~~~~~-~~~~~~~---~~~~~~~Di~d~~~l~~~~~~~~~D~V 77 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESL-ADVSDSE---RYVFEHADICDRAELDRIFAQHQPDAV 77 (352)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHH-HHHHCCC---CCEEEECCCCCHHHHHHHHHHHCCCEE
T ss_conf 799975100899999999997799889998479876778888-8763089---717998567899999999997399999
Q ss_pred EEECCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 995566667--6557467899889999999976541
Q gi|254781048|r 76 IVTAGIPRK--PSMSRDDLLADNLKAIEKVGAGIRK 109 (320)
Q Consensus 76 Vitag~~~~--~g~~R~dll~~N~~i~~~i~~~i~~ 109 (320)
+=.|+...- .-..-.+.++.|..-...+.+.+++
T Consensus 78 iHlAA~~~~~~s~~~p~~~~~~Nv~gt~nllea~~~ 113 (352)
T PRK10084 78 MHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARN 113 (352)
T ss_pred EECCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 997734665613309678652237869999999999
No 373
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=91.94 E-value=1.1 Score=24.65 Aligned_cols=116 Identities=22% Similarity=0.296 Sum_probs=68.6
Q ss_pred CCCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHH-----------H
Q ss_conf 99872899889-81368999999957998699996578812898830762054468875685269748-----------8
Q gi|254781048|r 1 MKSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYS-----------D 68 (320)
Q Consensus 1 mk~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~-----------~ 68 (320)
++.+.+-|.|+ +.+|..++..++..+. +++++|+++++++-.+..+.+.-. .......-..|.+ .
T Consensus 1 L~gKvalITG~s~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~g~--~~~~~~~Dv~d~~~v~~~v~~~~~~ 77 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKGG--NAQAFACDITDRDSVDTAVAAAEQA 77 (250)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--CEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 9519999968576899999999998799-999997988999999999995399--2899994489999999999999997
Q ss_pred HCCCCEEEEECCCCC-CCCC--CH---HHHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 378978999556666-7655--74---678998899----9999997654126674088714
Q gi|254781048|r 69 IAEADVCIVTAGIPR-KPSM--SR---DDLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 69 l~~aDivVitag~~~-~~g~--~R---~dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
+-.-|++|-.||... +|-. +. ...+..|.. ..+...+.+.+.. .|-++.++
T Consensus 78 ~G~iDilvnnAg~~~~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnis 138 (250)
T TIGR03206 78 LGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERG-AGRIVNIA 138 (250)
T ss_pred CCCCCEEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEC
T ss_conf 59997999898889998903499999999999982999999999999999749-91799965
No 374
>PRK08265 short chain dehydrogenase; Provisional
Probab=91.90 E-value=1.1 Score=24.62 Aligned_cols=112 Identities=20% Similarity=0.240 Sum_probs=67.7
Q ss_pred CEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCC--------HHHHCCCC
Q ss_conf 728998-89-813689999999579986999965788128988307620544688756852697--------48837897
Q gi|254781048|r 4 NKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSD--------YSDIAEAD 73 (320)
Q Consensus 4 ~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d--------~~~l~~aD 73 (320)
.|+++| |+ +.+|..+|..++..+. .+++.|+++++++..+.++.....+... .+....+ .+....-|
T Consensus 6 gKvalVTGgs~GIG~aia~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~~~~~~--Dv~~~~~i~~~~~~~~~~fG~iD 82 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA-CVAILDIDADNGAAVAASLGERARFIAT--DITDDAAIERAVATAVARFGGLD 82 (261)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHCCCEEEEEC--CCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99899948776899999999998799-8999979889999999981997289981--38999999999999999819987
Q ss_pred EEEEECCCCCCCCC--CHHH---HHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 89995566667655--7467---8998899----9999997654126674088714
Q gi|254781048|r 74 VCIVTAGIPRKPSM--SRDD---LLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 74 ivVitag~~~~~g~--~R~d---ll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
++|-.||....+.. +..| .+..|.. ..+...+.+++. .|-+|+++
T Consensus 83 iLVNNAg~~~~~~~~~~~e~w~~~~~vNl~~~~~~~q~~~~~m~~~--~G~IInis 136 (261)
T PRK08265 83 ILVNLACTYVDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLKRG--GGAIVNFT 136 (261)
T ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCEEEEEE
T ss_conf 8998575578873439999999999998399999999999999876--97799996
No 375
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.79 E-value=0.84 Score=25.29 Aligned_cols=79 Identities=24% Similarity=0.262 Sum_probs=41.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCC-CEEEEEECCCCCHHHHHH---------HHHHHCCCCCCCCEEEECCCH-----
Q ss_conf 98728998898136899999995799-869999657881289883---------076205446887568526974-----
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKL-GDVVLLDIVDGMPRGKAL---------DIAESSPVEGFGAQLCGTSDY----- 66 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l-~ei~L~D~~~~~~~g~~~---------Dl~~~~~~~~~~~~v~~~~d~----- 66 (320)
.+.||.|||+|-.|-..+-. -+++ +.+..+|+.++ ++-++. |+.......+-..+. -+.+|
T Consensus 164 pPAkVlViGaGVAGlqAi~t--A~~LGA~V~a~DvR~~-~~EqveSlGa~fv~v~~~e~~~~~gGYAk~-~s~e~~~~q~ 239 (510)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGA--AGSLGAIVRAFDTRPE-VKEQVESMGAEFLELDFEEEGGSGDGYAKV-MSEEFIKAEM 239 (510)
T ss_pred CCCEEEEECCCHHHHHHHHH--HHHCCCEEEEECCCHH-HHHHHHHHCCCEEEEECCCCCCCCCCCCCC-CCHHHHHHHH
T ss_conf 88528997464777999999--9627978999658788-999999706742552101024457850354-5678999999
Q ss_pred ----HHHCCCCEEEEECCCCCC
Q ss_conf ----883789789995566667
Q gi|254781048|r 67 ----SDIAEADVCIVTAGIPRK 84 (320)
Q Consensus 67 ----~~l~~aDivVitag~~~~ 84 (320)
+.++++|+||-||-.|-+
T Consensus 240 ~~~~e~~~~aDiVItTalIPG~ 261 (510)
T PRK09424 240 ALFAEQAKEVDIIITTALIPGK 261 (510)
T ss_pred HHHHHHHHHCCEEEEEEECCCC
T ss_conf 9999997424779986541899
No 376
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.77 E-value=1.1 Score=24.53 Aligned_cols=129 Identities=13% Similarity=0.149 Sum_probs=58.5
Q ss_pred EEEEECCCCHHH--HHHHHHHHCCC---CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHH------CCCC
Q ss_conf 289988981368--99999995799---869999657881289883076205446887568526974883------7897
Q gi|254781048|r 5 KIALIGSGMIGG--TLAHLAVLKKL---GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDI------AEAD 73 (320)
Q Consensus 5 KV~IIGaG~VG~--~~a~~~~~~~l---~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l------~~aD 73 (320)
-|+++|--.||. |+|-+++.-.+ -.+.|+-.+.=+.-|+- -|.--+..++.+..+.. +++++ .++|
T Consensus 225 vi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvE-QLktYa~Il~iPv~vv~--~~~el~~al~~~~~D 301 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIE-QLKRYADTMGMPFYPVK--DIKKFKETLARDGSE 301 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH-HHHHHHHHHCCCEEEEE--CHHHHHHHHHHCCCC
T ss_conf 999989999888999999999999974992799952665377999-99999998599459951--899999999856999
Q ss_pred EEEE-ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE--CCCCHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 8999-556666765574678998899999999765412667408871--4842078999988449986561100
Q gi|254781048|r 74 VCIV-TAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICI--TNPLDAMVWALQKFSGLPSHMVVGM 144 (320)
Q Consensus 74 ivVi-tag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivv--tNPvDv~~~~~~~~sg~~~~rViG~ 144 (320)
+|+| |||...+..+ ...-++++...+....+--.++|+ |.=-..|..++.+++.++.+++|-|
T Consensus 302 lILIDTAGrS~rd~~--------~~~eL~~ll~~~~~~~~ie~~LVLSaTtk~~dl~~ii~~f~~l~~~~lIfT 367 (432)
T PRK12724 302 LILIDTAGYSHRNLE--------QLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLT 367 (432)
T ss_pred EEEEECCCCCCCCHH--------HHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 999929998978999--------999999999863667885179999788998999999998426999849997
No 377
>CHL00194 ycf39 Ycf39; Provisional
Probab=91.75 E-value=1.1 Score=24.51 Aligned_cols=67 Identities=19% Similarity=0.154 Sum_probs=42.0
Q ss_pred EEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEC--CC----HHHHCCCCEEEE
Q ss_conf 2899889-8136899999995799869999657881289883076205446887568526--97----488378978999
Q gi|254781048|r 5 KIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGT--SD----YSDIAEADVCIV 77 (320)
Q Consensus 5 KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~--~d----~~~l~~aDivVi 77 (320)
||-|+|| |.+|..++..++..+. ++..+-++++++.. +.. ....+... .| .++++|+|.|+.
T Consensus 2 ~ILV~GATG~lGr~vVr~Ll~~G~-~Vr~lvRnp~ka~~----l~~------~Gve~v~gDl~dpesl~~Al~GvdaVi~ 70 (319)
T CHL00194 2 SLLVIGATGTLGRQIVRRALDEGY-QVKCLVRNLRKAAF----LKE------WGAELVYGDLSLPETIPPALEGITAIID 70 (319)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHH----HHH------CCCEEEEECCCCHHHHHHHHCCCCEEEE
T ss_conf 799989985899999999996889-08999578676323----421------5967999427887789999659967999
Q ss_pred ECCCC
Q ss_conf 55666
Q gi|254781048|r 78 TAGIP 82 (320)
Q Consensus 78 tag~~ 82 (320)
+++..
T Consensus 71 ~~~~~ 75 (319)
T CHL00194 71 ASTSR 75 (319)
T ss_pred ECCCC
T ss_conf 45667
No 378
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=91.69 E-value=0.39 Score=27.43 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=31.5
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 9987289988981368999999957998699996578
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
++..+|.|||||.-|-..++.+...++.++++++.++
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~ 42 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD 42 (443)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 6755489989878899999999975998679997057
No 379
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=91.68 E-value=1.1 Score=24.47 Aligned_cols=135 Identities=19% Similarity=0.234 Sum_probs=69.6
Q ss_pred EEEEECCCCHHHHHH-HHHHHCCCCE-----E---E--EEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCC
Q ss_conf 289988981368999-9999579986-----9---9--996578812898830762054468875685269748837897
Q gi|254781048|r 5 KIALIGSGMIGGTLA-HLAVLKKLGD-----V---V--LLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEAD 73 (320)
Q Consensus 5 KV~IIGaG~VG~~~a-~~~~~~~l~e-----i---~--L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aD 73 (320)
||.++|-+.||.+.. .....+...+ + + -++.+... .-+.|.|++-... ...--..-.++||
T Consensus 15 KiVlVGD~~VGKTsLl~~~~~~~F~~~y~pTv~~~~~~~i~v~~~~---v~L~lWDTAGqE~-----y~~lr~~yY~~a~ 86 (232)
T cd04174 15 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQR---VELSLWDTSGSPY-----YDNVRPLCYSDSD 86 (232)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCEE---EEEEEEECCCCCC-----CCHHHHHHHCCCC
T ss_conf 9999998998999999999739899985883688889999999999---9999983899701-----0036799740687
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHH--HHHHHHHCCCCHHHHHHHCCCHHHH
Q ss_conf 89995566667655746789988999999997654126674088714842078--9999884499865611000525689
Q gi|254781048|r 74 VCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAM--VWALQKFSGLPSHMVVGMAGILDSA 151 (320)
Q Consensus 74 ivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~--~~~~~~~sg~~~~rViG~Gt~LDs~ 151 (320)
++++.-..-. .+-|+. +...-.+.+.+++|+..+++|.|=+|.= .....+.+. .+.+.+.. +..
T Consensus 87 ~~ll~Fdvt~------~~Sfe~---~~~~Wi~Ei~~~~p~~piiLVGnK~DLr~d~~~l~~L~~-~~~~pVt~----eeg 152 (232)
T cd04174 87 AVLLCFDISR------PETVDS---ALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSN-QKQAPISY----EQG 152 (232)
T ss_pred EEEEEEECCC------HHHHHH---HHHHHHHHHHHHCCCCCEEEEEECHHCCCCHHHHHHHHH-CCCCCCCH----HHH
T ss_conf 8999996898------799998---999999999986899978999876021547577889975-68887579----999
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999999971987
Q gi|254781048|r 152 RFRYFLAQEFGVS 164 (320)
Q Consensus 152 R~~~~ia~~l~v~ 164 (320)
+ .+|+.+|..
T Consensus 153 ~---~~Ak~iga~ 162 (232)
T cd04174 153 C---ALAKQLGAE 162 (232)
T ss_pred H---HHHHHCCCC
T ss_conf 9---999974997
No 380
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=91.55 E-value=0.44 Score=27.12 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=28.5
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCC--CEEEEEECC
Q ss_conf 998728998898136899999995799--869999657
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKL--GDVVLLDIV 36 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l--~ei~L~D~~ 36 (320)
||+-.|.|+|+|-+|.++|.++...+. -.+.+++..
T Consensus 1 M~~~DV~IvGaGp~Gl~lAl~L~~~g~~~~~v~viE~~ 38 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGRLPVALIEAF 38 (395)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 97189899993899999999999618899749999378
No 381
>pfam08477 Miro Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis.
Probab=91.53 E-value=0.37 Score=27.58 Aligned_cols=105 Identities=17% Similarity=0.179 Sum_probs=55.4
Q ss_pred EEEEECCCCHH-HHHHHHHHHCCCC-EE-----------EEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCC
Q ss_conf 28998898136-8999999957998-69-----------99965788128988307620544688756852697488378
Q gi|254781048|r 5 KIALIGSGMIG-GTLAHLAVLKKLG-DV-----------VLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAE 71 (320)
Q Consensus 5 KV~IIGaG~VG-~~~a~~~~~~~l~-ei-----------~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~ 71 (320)
||.++|...|| .++...+..+... +. ..+..+... ..+.+.|.+. ......-....+++
T Consensus 1 KivvvG~~~vGKTSLi~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~l~i~Dt~g-----~~~~~~~~~~~~~~ 72 (118)
T pfam08477 1 KVVVIGDKGSGKSSLLSQLVGGEFPPEIPEEIQGDTLAVDTLEVDGDT---ELLHIWDFGG-----REELKFEHIIFMKT 72 (118)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCE---EEEEEEECCC-----CHHHHHHHHHHCCC
T ss_conf 999999899789999999983988876667877776888999999928---9999998999-----67776666542258
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCH
Q ss_conf 97899955666676557467899889999999976541266740887148420
Q gi|254781048|r 72 ADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLD 124 (320)
Q Consensus 72 aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvD 124 (320)
||.+++.-.... .+-+ .+++-..+-...+++.+|+.-+++|.|=+|
T Consensus 73 ~d~~ilvydit~------~~Sf-~~~~~~~~~i~~~~~~~~~~piilVGnK~D 118 (118)
T pfam08477 73 ADAILLVYDLTD------RESL-NRVSRLIAWLPHLRKLGKKIPVILVGNKFD 118 (118)
T ss_pred CCEEEEEEECCC------HHHH-HHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 746789997998------7899-999999999999982099998899996859
No 382
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=91.52 E-value=1.2 Score=24.36 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=60.1
Q ss_pred CCEEEEECCCCHHHH-HHHHHHHCCCCE-----E---E--EEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCC
Q ss_conf 872899889813689-999999579986-----9---9--9965788128988307620544688756852697488378
Q gi|254781048|r 3 SNKIALIGSGMIGGT-LAHLAVLKKLGD-----V---V--LLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAE 71 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~-~a~~~~~~~l~e-----i---~--L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~ 71 (320)
+-||.++|-+.||.+ +......+...+ + . -+.++... ..+.|.|++-... ...-...-.++
T Consensus 1 r~KivlvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~~~v~~~~---v~l~iwDTaGqe~-----~~~l~~~~y~~ 72 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQR---IELSLWDTSGSPY-----YDNVRPLCYPD 72 (178)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCEE---EEEEEEECCCCHH-----HCCHHHHHHCC
T ss_conf 909999999997789999999639999985785688889999999999---9999996898742-----11036677346
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHH
Q ss_conf 97899955666676557467899889999999976541266740887148420789
Q gi|254781048|r 72 ADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMV 127 (320)
Q Consensus 72 aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~ 127 (320)
+|.+++.-..-.+ +-++ .+...-.+.+.+++|+..+++|.|=+|.-.
T Consensus 73 a~~~ilvydit~~------~Sf~---~v~~~W~~ei~~~~~~~~iiLVGnK~DLr~ 119 (178)
T cd04131 73 SDAVLICFDISRP------ETLD---SVLKKWRGEIQEFCPNTKVLLVGCKTDLRT 119 (178)
T ss_pred CCEEEEEEECCCH------HHHH---HHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 8789999737987------8899---999999999998687998899998543664
No 383
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=91.47 E-value=0.92 Score=25.05 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=24.3
Q ss_pred CCEEEEECC-CCHHHHHHHHHHHCCCCEEEEE
Q ss_conf 872899889-8136899999995799869999
Q gi|254781048|r 3 SNKIALIGS-GMIGGTLAHLAVLKKLGDVVLL 33 (320)
Q Consensus 3 ~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~ 33 (320)
+.||+|+|+ |..|..+.-++...+--||.-+
T Consensus 2 ~~kV~I~GasGytG~EL~rlL~~Hp~vel~~i 33 (314)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSI 33 (314)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCEEEEEE
T ss_conf 82699989988569999999975998299996
No 384
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=91.43 E-value=0.23 Score=28.93 Aligned_cols=113 Identities=16% Similarity=0.209 Sum_probs=58.5
Q ss_pred CCCCEEEEECCCCHHH-HHHHHHHHCCCC-E--EEEEECCC--CCHH--HHHHHHHHHCCCCCCCCEEEECCCHHHHCCC
Q ss_conf 9987289988981368-999999957998-6--99996578--8128--9883076205446887568526974883789
Q gi|254781048|r 1 MKSNKIALIGSGMIGG-TLAHLAVLKKLG-D--VVLLDIVD--GMPR--GKALDIAESSPVEGFGAQLCGTSDYSDIAEA 72 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~-~~a~~~~~~~l~-e--i~L~D~~~--~~~~--g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~a 72 (320)
||+-||.++|.+.||. ++......+... + -...|... -... -..++|.|++....+ ..-...-.++|
T Consensus 1 m~~~KivlvGd~~VGKTsli~r~~~~~F~~~y~pti~~~~~~~~~i~~~~v~l~iwDtaG~e~~-----~~~~~~~~~~a 75 (191)
T cd01875 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEY-----DRLRTLSYPQT 75 (191)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCCCH-----HHHHHHHHCCC
T ss_conf 9518999999999899999999972999986466210004678999999999999858887003-----56778774478
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHH
Q ss_conf 7899955666676557467899889999999976541266740887148420789
Q gi|254781048|r 73 DVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMV 127 (320)
Q Consensus 73 DivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~ 127 (320)
|.+++.-....+ ..+- |+. ....+.+..++|+..+++|.|=.|...
T Consensus 76 ~~~ilvfdvt~~-----~Sf~--~v~--~~w~~ei~~~~~~~piiLvGnK~DL~~ 121 (191)
T cd01875 76 NVFIICFSIASP-----SSYE--NVR--HKWHPEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred CEEEEEEECCCH-----HHHH--HHH--HHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 689999857977-----8899--999--999999997096997899988801023
No 385
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=91.42 E-value=1.2 Score=24.29 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=29.8
Q ss_pred CCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 7408871484207899998844998656110005256899999999971987
Q gi|254781048|r 113 NSFVICITNPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQEFGVS 164 (320)
Q Consensus 113 ~~i~ivvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia~~l~v~ 164 (320)
+.++++=+-|+-.++-.+.|..|. ++|+.+ |...-|..+|+++|.+
T Consensus 162 ~~vlV~GaG~vGl~aiq~ak~~Ga--~~V~~~----d~~~~kl~~a~~lGAd 207 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVALGA--KSVTAI----DINSEKLALAKSLGAM 207 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCC--CEEEEE----ECCHHHHHHHHHCCCC
T ss_conf 869998998389999999998599--769999----2899999999972998
No 386
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=91.38 E-value=0.91 Score=25.07 Aligned_cols=106 Identities=17% Similarity=0.195 Sum_probs=57.5
Q ss_pred EEEEECCCCHH-HHHHHHHHHCCCC-E-------EEE--EECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCC
Q ss_conf 28998898136-8999999957998-6-------999--96578812898830762054468875685269748837897
Q gi|254781048|r 5 KIALIGSGMIG-GTLAHLAVLKKLG-D-------VVL--LDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEAD 73 (320)
Q Consensus 5 KV~IIGaG~VG-~~~a~~~~~~~l~-e-------i~L--~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aD 73 (320)
||.++|.+.|| +++......+... + ..- +.++.. -..+.+.|++-... ...-...-.++||
T Consensus 2 KvvlvGd~~VGKTsli~r~~~~~F~~~y~pT~~~~~~~~i~~~~~---~v~l~iwDtaG~e~-----~~~l~~~~~~~a~ 73 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGK---PVRLQLCDTAGQDE-----FDKLRPLCYPDTD 73 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCE---EEEEEEEECCCCCC-----CCHHHHHHHCCCC
T ss_conf 899999899788999999961999998578358999999999999---99999998998734-----4345676613787
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHH
Q ss_conf 899955666676557467899889999999976541266740887148420789
Q gi|254781048|r 74 VCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMV 127 (320)
Q Consensus 74 ivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~ 127 (320)
.+++.-..-. | +-++ |.. ....+.+.+++|+..++++.|.+|...
T Consensus 74 ~~ilvydv~~-----~-~Sf~-~l~--~~w~~~i~~~~~~~piilvGnK~DL~~ 118 (173)
T cd04130 74 VFLLCFSVVN-----P-SSFQ-NIS--EKWIPEIRKHNPKAPIILVGTQADLRT 118 (173)
T ss_pred EEEEEEECCC-----H-HHHH-HHH--HHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf 8999996598-----7-8899-999--999999996098998899988701100
No 387
>PRK06914 short chain dehydrogenase; Provisional
Probab=91.28 E-value=1.2 Score=24.20 Aligned_cols=116 Identities=14% Similarity=0.056 Sum_probs=68.1
Q ss_pred CCCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEE--ECCCH----------H
Q ss_conf 99872899889-81368999999957998699996578812898830762054468875685--26974----------8
Q gi|254781048|r 1 MKSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLC--GTSDY----------S 67 (320)
Q Consensus 1 mk~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~--~~~d~----------~ 67 (320)
|+++-+-|.|+ +.+|..+|..++.++ ..+++.++++++++....++....... ...+. -.+|. +
T Consensus 1 l~~K~alITGassGIG~a~A~~la~~G-~~V~~~~r~~~~~~~l~~~~~~~~~~~--~~~~~~~Dvtd~~~v~~~~~~~~ 77 (280)
T PRK06914 1 MNKKIAIITGASSGFGLLTTLELAKKD-YLVIATMRNLEKQENLISQAAQLNLSQ--NIKVQQLDVTDQNSIHNFQLFLK 77 (280)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCCCC--CEEEEECCCCCHHHHHHHHHHHH
T ss_conf 951989990734499999999999879-989999898899999999999649997--66999688999999999999999
Q ss_pred HHCCCCEEEEECCCCCCCC-C--C---HHHHHHHHH----HHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 8378978999556666765-5--7---467899889----99999997654126674088714
Q gi|254781048|r 68 DIAEADVCIVTAGIPRKPS-M--S---RDDLLADNL----KAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 68 ~l~~aDivVitag~~~~~g-~--~---R~dll~~N~----~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
+...-|++|..||.....- + + -...++.|. .+.+.+.+.+++.. .|-+++++
T Consensus 78 ~~g~iDvLVNNAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~lp~m~~~~-~G~Ivnis 139 (280)
T PRK06914 78 EYGRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQK-SGKIINIS 139 (280)
T ss_pred HHCCCCEEEECCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEC
T ss_conf 829987899788667787421177999999998712899989999978777569-95899983
No 388
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=91.27 E-value=0.34 Score=27.86 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=24.9
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 99872899889813689999999579986999965
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDI 35 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~ 35 (320)
++..+|+|-|.|+||+.+|..+...+..=+.+-|.
T Consensus 29 l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~vsD~ 63 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 78999999898899999999999879959999847
No 389
>KOG4777 consensus
Probab=91.27 E-value=0.53 Score=26.60 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=40.4
Q ss_pred CCCCEEE-EECC-CCHHHHHHHHHHHCCCCEEEEEE---CCCCCHHHHHHHHHHH--CCCCCCCCEEEECCCHHHHCCCC
Q ss_conf 9987289-9889-81368999999957998699996---5788128988307620--54468875685269748837897
Q gi|254781048|r 1 MKSNKIA-LIGS-GMIGGTLAHLAVLKKLGDVVLLD---IVDGMPRGKALDIAES--SPVEGFGAQLCGTSDYSDIAEAD 73 (320)
Q Consensus 1 mk~~KV~-IIGa-G~VG~~~a~~~~~~~l~ei~L~D---~~~~~~~g~~~Dl~~~--~~~~~~~~~v~~~~d~~~l~~aD 73 (320)
|--.|++ |+|+ |.||+-...++...+-.+|..+. +...|.-+.+-.-.++ ++-..+...+. .-+.+.+.+||
T Consensus 1 Ma~kk~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAGK~ya~a~~wkqt~~lp~~~~e~~V~-ec~~~~F~ecD 79 (361)
T KOG4777 1 MALKKSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAGKRYAFAGNWKQTDLLPESAHEYTVE-ECTADSFNECD 79 (361)
T ss_pred CCCCCCCCEEECCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEECCCCHHCCCCCCHHHHHHHH-HCCHHHCCCCC
T ss_conf 97331355210343147789998616985134230133314698157604411202465034341375-55840236655
Q ss_pred EEEEECCC
Q ss_conf 89995566
Q gi|254781048|r 74 VCIVTAGI 81 (320)
Q Consensus 74 ivVitag~ 81 (320)
|+...++.
T Consensus 80 Ivfsglda 87 (361)
T KOG4777 80 IVFSGLDA 87 (361)
T ss_pred EEEECCCC
T ss_conf 89852782
No 390
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB; InterPro: IPR012730 This entry describes the molybdopterin biosynthesis protein MoeB in Escherichia coli and related species. MoeB and MoaD are involved in molybdenum cofactor biosynthesis, an evolutionarily conserved pathway. The MoeB enzyme covalently modifies the molybdopterin synthase MoaD by sulphurylation. The crystal structure of the complex between the E. coli MoeB and MoaD proteins reveals a MoeB(2)-MoaD(2) heterotetramer in which the MoeB subunits form a mainly hydrophobic dimer . MoeB is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (IPR000594 from INTERPRO). ; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=91.25 E-value=0.43 Score=27.19 Aligned_cols=39 Identities=21% Similarity=0.392 Sum_probs=32.9
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 998728998898136899999995799869999657881
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGM 39 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~ 39 (320)
+|..||-|+|+|..|=+.+.-++.-++.+|.|+|-+.-.
T Consensus 22 LK~s~vLivG~GGLGCAa~QYLa~AGvG~l~L~DfD~V~ 60 (240)
T TIGR02355 22 LKASKVLIVGLGGLGCAASQYLAAAGVGRLTLVDFDTVS 60 (240)
T ss_pred HCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEECCEEH
T ss_conf 500567778367034567888864366327886337100
No 391
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=91.24 E-value=1 Score=24.73 Aligned_cols=204 Identities=23% Similarity=0.271 Sum_probs=98.1
Q ss_pred EEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCCC
Q ss_conf 2899889-813689999999579986999965788128988307620544688756852697488378978999556666
Q gi|254781048|r 5 KIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIPR 83 (320)
Q Consensus 5 KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~~ 83 (320)
||.|+|+ |++|..+...+. +--|++-.|..+ +|+.+.... ..+ ..+ ...|+||-+|....
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~-------~Ditd~~~v----~~~-----i~~-~~PDvVIn~AAyt~ 62 (281)
T COG1091 2 KILITGANGQLGTELRRALP--GEFEVIATDRAE-------LDITDPDAV----LEV-----IRE-TRPDVVINAAAYTA 62 (281)
T ss_pred CEEEECCCCHHHHHHHHHHC--CCCEEEECCCCC-------CCCCCHHHH----HHH-----HHH-HCCCEEEECCCCCC
T ss_conf 58997698767999999717--784399515765-------555685899----999-----986-19998998732036
Q ss_pred C--CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHH-------HHHCCCC-HHHHHHHCCCHHHHHH
Q ss_conf 7--6557467899889999999976541266740887148420789999-------8844998-6561100052568999
Q gi|254781048|r 84 K--PSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWAL-------QKFSGLP-SHMVVGMAGILDSARF 153 (320)
Q Consensus 84 ~--~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~-------~~~sg~~-~~rViG~Gt~LDs~R~ 153 (320)
- .-..+..-+..|+.-...+++..++.+ +.++-+|- =|++ ++.+..| |--+-|-- -|
T Consensus 63 vD~aE~~~e~A~~vNa~~~~~lA~aa~~~g--a~lVhiST-----DyVFDG~~~~~Y~E~D~~~P~nvYG~s-Kl----- 129 (281)
T COG1091 63 VDKAESEPELAFAVNATGAENLARAAAEVG--ARLVHIST-----DYVFDGEKGGPYKETDTPNPLNVYGRS-KL----- 129 (281)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHC--CEEEEEEC-----CEEECCCCCCCCCCCCCCCCHHHHHHH-HH-----
T ss_conf 541338989977767799999999999719--76999634-----457438989888778999970245477-89-----
Q ss_pred HHHHH-HHCCCCCCCC---EEEEECCCCCEEE-EECCCCCCCCCHHHHHHHC--CCCCHHHHHHHHHHHHCCHHH--HHH
Q ss_conf 99999-9719873355---0567507885246-5102354477015543001--587876799998455101588--887
Q gi|254781048|r 154 RYFLA-QEFGVSVESV---TALVLGSHGDSMV-PMLRYATVSGIPVSDLVKL--GWTTQEKIDQIVKRTREGGAE--IVG 224 (320)
Q Consensus 154 ~~~ia-~~l~v~~~~V---~~~ViGeHGds~v-p~~S~~~v~g~p~~~~~~~--~~~~~~~~~~l~~~v~~~g~~--ii~ 224 (320)
.-+.+ +..+ |..+ .+||.|+||.+.+ +.|..+. .|+++.-.-.+ +.+...++.+.+.+.-....+ ++.
T Consensus 130 ~GE~~v~~~~--~~~~I~Rtswv~g~~g~nFv~tml~la~-~~~~l~vv~Dq~gsPt~~~dlA~~i~~ll~~~~~~~~yH 206 (281)
T COG1091 130 AGEEAVRAAG--PRHLILRTSWVYGEYGNNFVKTMLRLAK-EGKELKVVDDQYGSPTYTEDLADAILELLEKEKEGGVYH 206 (281)
T ss_pred HHHHHHHHHC--CCEEEEEEEEEECCCCCCHHHHHHHHHH-CCCCEEEECCEEECCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 7899999739--9879998565545888778999999850-599269979845387469999999999983455586799
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 5157654322032323445545288
Q gi|254781048|r 225 LLRSGSAYYAPASSAIAIAESYLKN 249 (320)
Q Consensus 225 ~~~kg~t~~~~a~a~~~ii~aIl~~ 249 (320)
+.+.|.+ +-.++.+.|+..
T Consensus 207 ~~~~g~~------Swydfa~~I~~~ 225 (281)
T COG1091 207 LVNSGEC------SWYEFAKAIFEE 225 (281)
T ss_pred EECCCCC------CHHHHHHHHHHH
T ss_conf 8079741------199999999998
No 392
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=91.22 E-value=1.3 Score=24.17 Aligned_cols=113 Identities=14% Similarity=0.134 Sum_probs=67.6
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEE--EECCCHH-----------
Q ss_conf 9872899889-8136899999995799869999657881289883076205446887568--5269748-----------
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQL--CGTSDYS----------- 67 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v--~~~~d~~----------- 67 (320)
+.+.+-|.|+ +.+|..+|..++..+ +++++.|+++++++..+.+++..- ..... .-..|.+
T Consensus 13 ~gK~alITGgs~GIG~~ia~~la~~G-a~V~i~~r~~~~~~~~~~~l~~~g----~~~~~~~~Dv~~~~~v~~~~~~~~~ 87 (259)
T PRK06124 13 AGQVALVTGSARGLGLEIARALAEAG-AHVLVNGRNAARVEAAVAALRAAG----GAAEALVFDISDEEAVAAAFARIDA 87 (259)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCC----CCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 99989992867489999999999879-999999698899999999999659----9589999517999999999999999
Q ss_pred HHCCCCEEEEECCCCCCCCC---CHH---HHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 83789789995566667655---746---78998899----9999997654126674088714
Q gi|254781048|r 68 DIAEADVCIVTAGIPRKPSM---SRD---DLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 68 ~l~~aDivVitag~~~~~g~---~R~---dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
....-|++|-.||....... +.. ..++.|.. ..+...+.+.+.+ .|-++.++
T Consensus 88 ~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~~Nl~g~~~~~q~~~~~M~~~~-~G~IInis 149 (259)
T PRK06124 88 EHGRLDILVNNVGARNRRPLAELDDAEIRALLETDLVAPILLSRLAAQRMVRQG-YGRIIAIT 149 (259)
T ss_pred HCCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEC
T ss_conf 759997999898889999906699999999999984999999999999987769-93699972
No 393
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=91.22 E-value=1.3 Score=24.16 Aligned_cols=107 Identities=18% Similarity=0.275 Sum_probs=58.7
Q ss_pred CCEEEEECCCCHHHHH-HHHHHHCCCC-E---EEE------EECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCC
Q ss_conf 8728998898136899-9999957998-6---999------965788128988307620544688756852697488378
Q gi|254781048|r 3 SNKIALIGSGMIGGTL-AHLAVLKKLG-D---VVL------LDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAE 71 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~-a~~~~~~~l~-e---i~L------~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~ 71 (320)
+-||.++|.+.||.+. ......+... + -+. +.++... ..+.|.|++-...+. .--+.-.++
T Consensus 1 r~KiVlvGD~~VGKTsLl~~f~~~~F~~~y~pTi~~~~~~~~~vd~~~---v~L~iWDTAGqE~y~-----~lr~~yyr~ 72 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRR---IELNMWDTSGSSYYD-----NVRPLAYPD 72 (222)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCEE---EEEEEECCCCCCHHH-----HHHHHHCCC
T ss_conf 909999898998989999999639999984784587789999999999---999997688850345-----567875036
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHH
Q ss_conf 9789995566667655746789988999999997654126674088714842078
Q gi|254781048|r 72 ADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAM 126 (320)
Q Consensus 72 aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~ 126 (320)
||.+++.-..... +-|+ |+ .+.-.+.+.+++|+..+++|.|=+|.-
T Consensus 73 a~~~llvfdit~~------~SF~-~v--~~~W~~ei~~~~p~~piiLVGnK~DLR 118 (222)
T cd04173 73 SDAVLICFDISRP------ETLD-SV--LKKWQGETQEFCPNAKVVLVGCKLDMR 118 (222)
T ss_pred CCEEEEEEECCCH------HHHH-HH--HHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 9899999838977------8899-99--999999999858999789995874245
No 394
>PRK07035 short chain dehydrogenase; Provisional
Probab=91.21 E-value=1.3 Score=24.16 Aligned_cols=115 Identities=12% Similarity=0.105 Sum_probs=65.4
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHH-----------HH
Q ss_conf 9872899889-81368999999957998699996578812898830762054468875685269748-----------83
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYS-----------DI 69 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~-----------~l 69 (320)
+.+.+-|.|+ +.+|..+|..++..+ +++++.|++.+.++..+.++...-.. .........|.+ .+
T Consensus 7 ~gKvalITGas~GIG~aia~~la~~G-a~V~i~~r~~~~l~~~~~~i~~~g~~--~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQG-AHVIVSSRKLDGCQAVADAIVAAGGK--AEALACHIGEMEQIDALFAQIRERH 83 (252)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 89989995887499999999999879-98999979889999999999964995--7999824899999999999999982
Q ss_pred CCCCEEEEECCCCC--CC--CCCH---HHHHHHHH----HHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 78978999556666--76--5574---67899889----99999997654126674088714
Q gi|254781048|r 70 AEADVCIVTAGIPR--KP--SMSR---DDLLADNL----KAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 70 ~~aDivVitag~~~--~~--g~~R---~dll~~N~----~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
-.-|++|..||... .+ ..+. ...+..|. ...+...+.+++.. .|.++.++
T Consensus 84 G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Ivnis 144 (252)
T PRK07035 84 GRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQG-GGSIVNVA 144 (252)
T ss_pred CCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCEEEEEC
T ss_conf 99778987685588888820099999999999871243100045369999669-97499972
No 395
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=91.13 E-value=0.3 Score=28.17 Aligned_cols=34 Identities=24% Similarity=0.506 Sum_probs=24.7
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 87289988981368999999957998699996578
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
.++|.|||+|.+|..+|..+...++ ++.+++..+
T Consensus 144 ~k~vvVIGgG~IGlE~A~~l~~~G~-~Vtvve~~~ 177 (400)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRC-KVTVIELAA 177 (400)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEECC
T ss_conf 8739998855899999999997599-489995346
No 396
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=91.12 E-value=0.46 Score=27.02 Aligned_cols=35 Identities=31% Similarity=0.465 Sum_probs=28.8
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 998728998898136899999995799869999657
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIV 36 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~ 36 (320)
||+--|.|+|+|-+|.++|..+...++ .+.++|..
T Consensus 2 ~~~~DV~IvGaGp~Gl~lA~~La~~G~-~v~viE~~ 36 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKDSDL-RIAVIEGQ 36 (405)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
T ss_conf 998768999915899999999985899-78999379
No 397
>PRK08818 prephenate dehydrogenase; Provisional
Probab=91.11 E-value=0.92 Score=25.03 Aligned_cols=55 Identities=25% Similarity=0.291 Sum_probs=35.6
Q ss_pred CCEEEEEC-CCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEEECC
Q ss_conf 87289988-98136899999995799869999657881289883076205446887568526974-88378978999556
Q gi|254781048|r 3 SNKIALIG-SGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIVTAG 80 (320)
Q Consensus 3 ~~KV~IIG-aG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVitag 80 (320)
.+.|+||| +|..|.-++-.+..+.-.+++=.|..+.+ +-|. +.++.+|||||++-
T Consensus 4 ~piV~iiG~~~~~G~w~a~flr~~~~~~vig~dp~~~~-----------------------s~D~~~l~~~aDIVIisVP 60 (373)
T PRK08818 4 QPVVGIVGIAGAYGRWLAQFLRTRMQLEVIGYDPADPG-----------------------SLDPATLLARADVLVFSAP 60 (373)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC-----------------------CCCHHHHHHCCCEEEEECC
T ss_conf 86389962663265899999874366178854887756-----------------------6698898623898999778
No 398
>KOG2018 consensus
Probab=91.11 E-value=0.37 Score=27.62 Aligned_cols=36 Identities=14% Similarity=0.386 Sum_probs=30.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 987289988981368999999957998699996578
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
++.=|.|+|+|.||+.++..++..++..|.++|-+.
T Consensus 73 ~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdq 108 (430)
T KOG2018 73 TNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQ 108 (430)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCEEEEECHHH
T ss_conf 176799991685229999999982686389953101
No 399
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.06 E-value=1.3 Score=24.07 Aligned_cols=131 Identities=19% Similarity=0.275 Sum_probs=74.2
Q ss_pred EEEEECCCCHHH--HHHHHHH---H-CCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECC-CH----HHHCCCC
Q ss_conf 289988981368--9999999---5-7998699996578812898830762054468875685269-74----8837897
Q gi|254781048|r 5 KIALIGSGMIGG--TLAHLAV---L-KKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTS-DY----SDIAEAD 73 (320)
Q Consensus 5 KV~IIGaG~VG~--~~a~~~~---~-~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~-d~----~~l~~aD 73 (320)
-++.||--.||. |+|-+++ + .+-..+.|+-.+.-+.-|+-+ |..-+..++.+..+..+. ++ +.++|+|
T Consensus 178 V~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQ-LktYa~IlgvPv~vv~~~~eL~~aL~~l~~~d 256 (404)
T PRK06995 178 VFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQ-LRIYGKILGVPVHAVKDAADLRLALAELRNKH 256 (404)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH-HHHHHHHCCCEEEEECCHHHHHHHHHHHCCCC
T ss_conf 58986688876375899999999998389837999768754789999-99999875955999599999999999708999
Q ss_pred EEEE-ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEE--CCCCHHHHHHHHHHCCCCHHHHHHHCCCHH
Q ss_conf 8999-5566667655746789988999999997654126-67408871--484207899998844998656110005256
Q gi|254781048|r 74 VCIV-TAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYA-PNSFVICI--TNPLDAMVWALQKFSGLPSHMVVGMAGILD 149 (320)
Q Consensus 74 ivVi-tag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~~i~ivv--tNPvDv~~~~~~~~sg~~~~rViG~Gt~LD 149 (320)
+|+| |||...+. ..+. +++ ..+.... +.-.++|. |---+.|..++.+++.++.+++|-| =||
T Consensus 257 lILIDTaGrs~rD-----~~~~------e~l-~~l~~~~~~~~~~LVLsat~~~~dl~~i~~~f~~~~~~~~I~T--KLD 322 (404)
T PRK06995 257 IVLIDTVGMSQRD-----RMVS------EQI-AMLHGAGAPVQRLLLLNATSHGDTLNEVVQAYRGPGLAGCILT--KLD 322 (404)
T ss_pred EEEEECCCCCCCC-----HHHH------HHH-HHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEE--CCC
T ss_conf 9998099989768-----8899------999-9997357885289997798999999999998446999839983--040
Q ss_pred H
Q ss_conf 8
Q gi|254781048|r 150 S 150 (320)
Q Consensus 150 s 150 (320)
.
T Consensus 323 E 323 (404)
T PRK06995 323 E 323 (404)
T ss_pred C
T ss_conf 6
No 400
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=91.05 E-value=0.45 Score=27.05 Aligned_cols=159 Identities=18% Similarity=0.278 Sum_probs=87.2
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCC------------CH----HHHHHHHHHHCCC-CCCCCEEEECCC
Q ss_conf 872899889813689999999579986999965788------------12----8988307620544-688756852697
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDG------------MP----RGKALDIAESSPV-EGFGAQLCGTSD 65 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~------------~~----~g~~~Dl~~~~~~-~~~~~~v~~~~d 65 (320)
.+||+|||||--|-.||-.|.-.++ +.+.||+.++ |+ -+.-.++-..+-. +.+++.|=..=.
T Consensus 143 g~rVAviGAGPAGLaCAD~L~RaGV-~v~VfDRhP~iGGLLtFGIPsFKLdK~V~~~Rr~if~~MGi~F~Ln~EvGrD~~ 221 (480)
T TIGR01318 143 GKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFKLNTEVGRDIS 221 (480)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEECCCC
T ss_conf 8278997788602579998751785-599974770307601368885110278999999999758927865816503255
Q ss_pred HHH-HCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHH---HHHCCCCH-HH
Q ss_conf 488-37897899955666676557467899889999999976541266740887148420789999---88449986-56
Q gi|254781048|r 66 YSD-IAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWAL---QKFSGLPS-HM 140 (320)
Q Consensus 66 ~~~-l~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~---~~~sg~~~-~r 140 (320)
+++ |.+=|=|.+-.|..+. .|-||=.+.++=+. +.+.++. .+++|+|. .|
T Consensus 222 l~~LLe~YDAVFlGvGTY~~---~~ggLP~eDa~GV~----------------------~ALPFLianTr~lmGl~eyGr 276 (480)
T TIGR01318 222 LDDLLEDYDAVFLGVGTYRS---MRGGLPGEDAPGVL----------------------KALPFLIANTRQLMGLPEYGR 276 (480)
T ss_pred HHHHHHHCCEEEEECCCCCC---CCCCCCCCCCCCHH----------------------HHHHHHHHCCCEECCCCCCCC
T ss_conf 54443114848961143343---12877887742166----------------------642477661521237888777
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEE-EECCCCCCCCCHHHHHHH
Q ss_conf 11000525689999999997198733550567507885246-510235447701554300
Q gi|254781048|r 141 VVGMAGILDSARFRYFLAQEFGVSVESVTALVLGSHGDSMV-PMLRYATVSGIPVSDLVK 199 (320)
Q Consensus 141 ViG~Gt~LDs~R~~~~ia~~l~v~~~~V~~~ViGeHGds~v-p~~S~~~v~g~p~~~~~~ 199 (320)
-| ..+.++.-| .++.=+ ..-|||+ |||.- .+=|..+-+-..++..-+
T Consensus 277 Pi--aGw~~~~P~-------~~~~Gk--~VVVLGG-GDTaMDCvRTaiR~GA~~VTC~YR 324 (480)
T TIGR01318 277 PI--AGWEPEEPL-------IDVEGK--RVVVLGG-GDTAMDCVRTAIRLGAKKVTCAYR 324 (480)
T ss_pred CC--CCCCCCCCC-------CCCCCC--EEEEECC-CCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf 44--677766774-------234776--6898588-875257889999817761312665
No 401
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=90.97 E-value=0.98 Score=24.86 Aligned_cols=73 Identities=21% Similarity=0.295 Sum_probs=36.3
Q ss_pred EEEEECC-CCHHHHHHHHHHHC-CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCC
Q ss_conf 2899889-81368999999957-99869999657881289883076205446887568526974883789789995566
Q gi|254781048|r 5 KIALIGS-GMIGGTLAHLAVLK-KLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGI 81 (320)
Q Consensus 5 KV~IIGa-G~VG~~~a~~~~~~-~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~ 81 (320)
||+|||+ |.||..+..++... .+.-..|+-.. +-.|....-.+-. +.+.........++ +..++|+++++.+.
T Consensus 1 kVaIvGatGyvG~eli~lL~~hp~~~~~~l~as~--~~~G~~i~~~~~~-l~~~~~~~~~~~~~-~~~~~Dvvf~a~p~ 75 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASA--RSAGKRVSEAGPH-LKGEVVLELEPEDF-EELAVDIVFLALPH 75 (122)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEEC--CCCCCCHHHHCCC-CCCCCCCEECCCCC-CCCCCCEEEECCCC
T ss_conf 9899894519999999999858997457777404--6589757885966-45773505653311-00179999993882
No 402
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=90.96 E-value=0.65 Score=26.03 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=25.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 98728998898136899999995799869999657
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIV 36 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~ 36 (320)
+.++++|||.|+||+.++..+..-+ .++..+|..
T Consensus 115 ~gktvGIIG~G~IG~~va~~l~afG-~~vl~~DP~ 148 (379)
T PRK00257 115 AERTYGIVGVGHVGGRLVRVLRGLG-WKVLVCDPP 148 (379)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEECCH
T ss_conf 1987999771679999999999779-989997845
No 403
>PRK06101 short chain dehydrogenase; Provisional
Probab=90.90 E-value=1.3 Score=24.04 Aligned_cols=107 Identities=14% Similarity=0.134 Sum_probs=57.5
Q ss_pred CEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHH-------HC-CCCE
Q ss_conf 72899889-813689999999579986999965788128988307620544688756852697488-------37-8978
Q gi|254781048|r 4 NKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSD-------IA-EADV 74 (320)
Q Consensus 4 ~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~-------l~-~aDi 74 (320)
+.|-|.|+ +.+|..+|..++..+ .++++.++++++++..+....+.. ....-.+|+++ +. ..|+
T Consensus 2 ktvlITGassGIG~a~A~~la~~G-~~Vi~~~R~~~~l~~~~~~~~~~~------~~~~Dvtd~~~~~~~~~~~~~~~d~ 74 (241)
T PRK06101 2 TSVLITGATSGIGKQLALDYAKAG-WKVIACGRNEAVLDELHDQSSNIF------TLAFDVTDYEETKAALSQLPFIPEL 74 (241)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCEE------EEEEECCCHHHHHHHHHHHCCCCCE
T ss_conf 989992240499999999999879-989999899999999997328804------8985226799999999971877778
Q ss_pred EEEECCCCCC--CCCC----HHHHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 9995566667--6557----4678998899----9999997654126674088714
Q gi|254781048|r 75 CIVTAGIPRK--PSMS----RDDLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 75 vVitag~~~~--~g~~----R~dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
+|..||.... .++. -...++.|.. ..+...+.+.+ .+-+++++
T Consensus 75 ~i~naG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~m~~---~~~iv~is 127 (241)
T PRK06101 75 WIFNAGDCEYMDDGIVDAQLMARVFNVNVVGVANCIEACQPHFQR---GHRVVIVG 127 (241)
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCEEEEC
T ss_conf 999886667687344899999999999889999999999999873---89505775
No 404
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=90.89 E-value=1.3 Score=23.97 Aligned_cols=105 Identities=15% Similarity=0.236 Sum_probs=59.8
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHH--HHCCCCCCCCEEEECCCH---HHHC-CCCEEE
Q ss_conf 8728998898136899999995799869999657881289883076--205446887568526974---8837-897899
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIA--ESSPVEGFGAQLCGTSDY---SDIA-EADVCI 76 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~--~~~~~~~~~~~v~~~~d~---~~l~-~aDivV 76 (320)
+++|.|||.|. |+++-..+....+.+++++|+++...+--..-|. ++..+ +-..++...+-+ .++. .-|+|+
T Consensus 77 pk~VLiiGgGd-G~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 77 PKRVLIIGGGD-GGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCEEEEECCCC-CHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCC-CCCEEEEECCHHHHHHHCCCCCCEEE
T ss_conf 77699988976-69999998368843379997088999999986667543357-97368996107999874887677899
Q ss_pred EECCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 955666676557--4678998899999999765412667408871
Q gi|254781048|r 77 VTAGIPRKPSMS--RDDLLADNLKAIEKVGAGIRKYAPNSFVICI 119 (320)
Q Consensus 77 itag~~~~~g~~--R~dll~~N~~i~~~i~~~i~~~~p~~i~ivv 119 (320)
+-..-|..|++. ..+. ++.+.+.+ .++|+++.-
T Consensus 155 ~D~tdp~gp~~~Lft~eF-------y~~~~~~L---~~~Gi~v~q 189 (282)
T COG0421 155 VDSTDPVGPAEALFTEEF-------YEGCRRAL---KEDGIFVAQ 189 (282)
T ss_pred ECCCCCCCCCCCCCCHHH-------HHHHHHHC---CCCCEEEEE
T ss_conf 858899884302377999-------99999862---889689994
No 405
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=90.81 E-value=0.52 Score=26.66 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=27.7
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 87289988981368999999957998699996578
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
+.-|.|+|+|-+|.++|+.+...++ ++.++|..+
T Consensus 6 ~~DV~IvGaGp~Gl~lA~~L~~~G~-~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGL-SVALVEGRE 39 (392)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-CEEEEECCC
T ss_conf 9988999906999999999986699-789991789
No 406
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=90.80 E-value=0.41 Score=27.34 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=28.1
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 7289988981368999999957998699996578
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
.-|.|||+|-+|.++||-|+..+. +++++|+..
T Consensus 4 ~DVvVIGaGi~G~s~A~~La~~G~-~V~vle~~~ 36 (377)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARAGL-RVLGIDRFM 36 (377)
T ss_pred EEEEEECCCHHHHHHHHHHHHCCC-CEEEECCCC
T ss_conf 489999952999999999997899-599992899
No 407
>PRK12939 short chain dehydrogenase; Provisional
Probab=90.77 E-value=1.4 Score=23.89 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=66.7
Q ss_pred CEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCC-CCCCCCEEEECCCH--------HHHCCC
Q ss_conf 728998-89-81368999999957998699996578812898830762054-46887568526974--------883789
Q gi|254781048|r 4 NKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSP-VEGFGAQLCGTSDY--------SDIAEA 72 (320)
Q Consensus 4 ~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~-~~~~~~~v~~~~d~--------~~l~~a 72 (320)
.|+++| |+ +.+|..+|..++..+. ++++.|+++++++....+++..-. ...+...+....+. +....-
T Consensus 7 ~KvalVTGgs~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 85 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGL 85 (250)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 98799958366899999999998799-99999698899999999999559909999924899999999999999974999
Q ss_pred CEEEEECCCCC-CCC--CCHH---HHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 78999556666-765--5746---78998899----9999997654126674088714
Q gi|254781048|r 73 DVCIVTAGIPR-KPS--MSRD---DLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 73 DivVitag~~~-~~g--~~R~---dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
|++|-.||... +|- ++.. +.+..|.. ..+...+.+++.. .|-+|.++
T Consensus 86 DiLVNNAG~~~~~~~~~~~~e~~~~~~~iNl~~~~~~~k~~~~~m~~~~-~G~IInis 142 (250)
T PRK12939 86 DGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMSRAALPHLRDSG-RGRIVNLA 142 (250)
T ss_pred CEEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEC
T ss_conf 7999887789999903499999999999982999999999999999849-93799980
No 408
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=90.74 E-value=0.57 Score=26.39 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=29.3
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 9987289988981368999999957998699996578
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
|++.-+.|||+|--|.++|..+...+. .++|++...
T Consensus 1 M~~yDviVIG~GpaG~~aA~~aa~~G~-~ValIEk~~ 36 (441)
T PRK08010 1 MNKYQAVIIGFGKAGKTLAVTLAKAGW-RVALIEQSN 36 (441)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC-EEEEEECCC
T ss_conf 997898999978899999999997899-299997589
No 409
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=90.72 E-value=1.4 Score=23.86 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=59.3
Q ss_pred EEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHC-CCCCCCCEEEECCC--------HHHHCCCC
Q ss_conf 28998-89-8136899999995799869999657881289883076205-44688756852697--------48837897
Q gi|254781048|r 5 KIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESS-PVEGFGAQLCGTSD--------YSDIAEAD 73 (320)
Q Consensus 5 KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~~v~~~~d--------~~~l~~aD 73 (320)
|+++| |+ +.+|..+|..++..+ +++++.|+++. +...+.++.... ....+...+....+ .+.+..-|
T Consensus 9 KvalITGas~GIG~aiA~~la~~G-a~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~G~iD 86 (260)
T PRK12823 9 KVAVVTGAAQGIGRGVALRAAAEG-ARVVLVDRSEL-VHEVAAELVAAGGEALALTADLETYAGAQAVMAAAVEAFGRID 86 (260)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHH-HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 989994886789999999999879-99999969468-9999999985499489998126885899999999999839987
Q ss_pred EEEEECCCC--CCCC--CCHHH---HHHHH----HHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 899955666--6765--57467---89988----999999997654126674088714
Q gi|254781048|r 74 VCIVTAGIP--RKPS--MSRDD---LLADN----LKAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 74 ivVitag~~--~~~g--~~R~d---ll~~N----~~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
++|..||.. .+|- .+..+ .+..| ....+...+.+.+.. .|.++.++
T Consensus 87 iLVnnag~~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~p~m~~~~-~G~Ii~is 143 (260)
T PRK12823 87 VLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQG-GGAIVNVS 143 (260)
T ss_pred EEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEEC
T ss_conf 9997752245789826599999999999985406899999999999816-96799982
No 410
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=90.68 E-value=0.73 Score=25.71 Aligned_cols=70 Identities=21% Similarity=0.297 Sum_probs=43.5
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCC--H-HHHCCCCEEEEE
Q ss_conf 9872899889813689999999579986999965788128988307620544688756852697--4-883789789995
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSD--Y-SDIAEADVCIVT 78 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d--~-~~l~~aDivVit 78 (320)
++.||+|||.|-||...|--+ .+.=+++.++|++.++++- +.|. +........++. . ++++.+|++|=+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA-~glgA~Vtild~n~~rl~~----ldd~---f~~rv~~~~st~~~iee~v~~aDlvIga 238 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIA-IGLGADVTILDLNIDRLRQ----LDDL---FGGRVHTLYSTPSNIEEAVKKADLVIGA 238 (371)
T ss_pred CCCCEEEECCCCCCCHHHHHH-HCCCCEEEEEECCHHHHHH----HHHH---HCCEEEEEECCHHHHHHHHHHCCEEEEE
T ss_conf 776089987761240699997-2368706999527788764----0676---5766699975899999874312679888
Q ss_pred C
Q ss_conf 5
Q gi|254781048|r 79 A 79 (320)
Q Consensus 79 a 79 (320)
.
T Consensus 239 V 239 (371)
T COG0686 239 V 239 (371)
T ss_pred E
T ss_conf 8
No 411
>PRK09126 hypothetical protein; Provisional
Probab=90.68 E-value=0.55 Score=26.49 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=30.1
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 998728998898136899999995799869999657
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIV 36 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~ 36 (320)
|...-|.|+|+|-+|.++|..+...++ ++.++|..
T Consensus 1 Mm~~DV~IvGaGp~Gl~lA~~La~~G~-~v~viE~~ 35 (392)
T PRK09126 1 MMHSDILVVGAGPAGLSFARSLAGSGL-KVTLIERQ 35 (392)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
T ss_conf 998999999925899999999986899-89999089
No 412
>PTZ00318 NADH dehydrogenase; Provisional
Probab=90.67 E-value=0.45 Score=27.03 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=28.5
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 9987289988981368999999957998699996578
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
|.+.||.|+|+|.-|-.++..+ .+...++.|+|.+.
T Consensus 8 ~~KprVVIlGgGfaGl~~ak~L-~~~~~~VtLVdp~n 43 (514)
T PTZ00318 8 LLKPNVVVVGTGWAGCYFARHL-NPKLANLHVLSTRN 43 (514)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-CCCCCCEEEECCCC
T ss_conf 7888589999769999999973-86898289999999
No 413
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=90.65 E-value=1.4 Score=23.82 Aligned_cols=115 Identities=23% Similarity=0.247 Sum_probs=68.4
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-----------HHH
Q ss_conf 9872899889-8136899999995799869999657881289883076205446887568526974-----------883
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-----------SDI 69 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-----------~~l 69 (320)
+.+.+-|.|+ +.+|..+|..++..+ +.+++.|+++++++-.+.++++.-. .. .....-.+|. +.+
T Consensus 8 ~gK~alVTG~~~GIG~aiA~~la~~G-a~Vvi~~~~~~~~~~~~~~l~~~g~-~~-~~~~~Dvtd~~~v~~~v~~~~~~~ 84 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYG-AEIIINDITAERAEKAVAKLRQEGI-KA-HAAAFNVTHKQEIEAAIEHIEKDI 84 (254)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCC-EE-EEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 99989996856789999999999869-9999996988999999999984498-18-999826899999999999999983
Q ss_pred CCCCEEEEECCCCCCCCC---C---HHHHHHHHHHH----HHHHHHHHHHCCCCCCEEEEC
Q ss_conf 789789995566667655---7---46789988999----999997654126674088714
Q gi|254781048|r 70 AEADVCIVTAGIPRKPSM---S---RDDLLADNLKA----IEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 70 ~~aDivVitag~~~~~g~---~---R~dll~~N~~i----~~~i~~~i~~~~p~~i~ivvt 120 (320)
..-|++|-.||....... + =...+..|..= .+.+.+.+.+.. .|-++.++
T Consensus 85 G~iDilVnNAG~~~~~~~~~~~~e~w~~~~~vNl~g~f~~~q~~~~~m~~~~-~G~IInis 144 (254)
T PRK08085 85 GPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQ-AGKIINIC 144 (254)
T ss_pred CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEE
T ss_conf 9986999898678887701098999999999984999999999859988739-97299997
No 414
>PRK07576 short chain dehydrogenase; Provisional
Probab=90.63 E-value=1.4 Score=23.82 Aligned_cols=114 Identities=14% Similarity=0.172 Sum_probs=66.5
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHH-----------HH
Q ss_conf 9872899889-81368999999957998699996578812898830762054468875685269748-----------83
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYS-----------DI 69 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~-----------~l 69 (320)
+.+++-|.|+ +.+|..+|..++..+ +++++.|+++++++..+.++...-. .......-..|.+ .+
T Consensus 7 ~gK~alVTGgs~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~~ 83 (260)
T PRK07576 7 AGKNVFVVGGTSGINLGIAQAFARAG-ANVAVASRSQEKVDAAVAQLQQAGP--EALGVSADVRDYAAVEAAFAAIADEF 83 (260)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCC--CEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 89989995896199999999999879-9999997988999999999995399--48999931899999999999999984
Q ss_pred CCCCEEEEECCCCC-CCCC--CHH---HHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 78978999556666-7655--746---78998899----9999997654126674088714
Q gi|254781048|r 70 AEADVCIVTAGIPR-KPSM--SRD---DLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 70 ~~aDivVitag~~~-~~g~--~R~---dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
-.-|++|-.||... .|-. +.. +.+..|.. ..+...+.+++. .|-+|+++
T Consensus 84 G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~p~m~~~--~G~IInis 142 (260)
T PRK07576 84 GPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRP--GASIIQIS 142 (260)
T ss_pred CCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCEEEEEE
T ss_conf 999899989867899891559999999999986463899999999998717--97799998
No 415
>PRK06475 salicylate hydroxylase; Provisional
Probab=90.61 E-value=0.53 Score=26.60 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=29.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 9872899889813689999999579986999965788
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDG 38 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~ 38 (320)
++..|.|||+|-+|-++|..|...++ ++.+++..++
T Consensus 1 tr~~VlIVGaGiaGL~~A~~L~~~G~-~v~V~E~~~~ 36 (400)
T PRK06475 1 TRGSILIAGAGVAGLSAALELAARGW-AVTIIEKAQE 36 (400)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCCC
T ss_conf 99979998958899999999997899-9999917998
No 416
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=90.59 E-value=0.98 Score=24.87 Aligned_cols=108 Identities=18% Similarity=0.230 Sum_probs=56.5
Q ss_pred EEEEECCCCHHH-HHHHHHHHCCCC-E--EEEEECCCC--CHHH--HHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEE
Q ss_conf 289988981368-999999957998-6--999965788--1289--8830762054468875685269748837897899
Q gi|254781048|r 5 KIALIGSGMIGG-TLAHLAVLKKLG-D--VVLLDIVDG--MPRG--KALDIAESSPVEGFGAQLCGTSDYSDIAEADVCI 76 (320)
Q Consensus 5 KV~IIGaG~VG~-~~a~~~~~~~l~-e--i~L~D~~~~--~~~g--~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivV 76 (320)
||.++|.+.||. ++......+... + -.+.|...- ...+ ..+++.|++... ....-...-.++||.++
T Consensus 2 Kiv~vGd~~VGKTsli~rf~~~~f~~~y~pTi~~~~~~~i~v~~~~~~l~i~DTaG~e-----~~~~~~~~~~~~a~~~i 76 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE-----DYDRLRPLSYPMTDVFL 76 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCC-----CCHHHHHHHHCCCCEEE
T ss_conf 8999998998599999999629899886885752022799999999999999797640-----31556599855787678
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHH
Q ss_conf 95566667655746789988999999997654126674088714842078
Q gi|254781048|r 77 VTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAM 126 (320)
Q Consensus 77 itag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~ 126 (320)
+.-....+ .. ++ |.+ ....+.+.+++|+.-+++|.|-+|..
T Consensus 77 lvydi~~~-----~S-f~-~~~--~~w~~~~~~~~~~~piilvgnK~DL~ 117 (174)
T cd04135 77 ICFSVVNP-----AS-FQ-NVK--EEWVPELKEYAPNVPYLLVGTQIDLR 117 (174)
T ss_pred EEEECCCH-----HH-HH-HHH--HHHHHHHHHHCCCCCEEEEEECHHHC
T ss_conf 98437977-----88-99-999--99999999868499889996852300
No 417
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=90.56 E-value=1.4 Score=23.77 Aligned_cols=136 Identities=15% Similarity=0.179 Sum_probs=81.1
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECC-CHH-----HHCCCCEEE
Q ss_conf 87289988981368999999957998699996578812898830762054468875685269-748-----837897899
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTS-DYS-----DIAEADVCI 76 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~-d~~-----~l~~aDivV 76 (320)
+++|-|+|-|.+|+.++-.+..+++. .+.+|.|++..+.... .+... ..+.. +.+ ...+|..+|
T Consensus 399 ~~~VII~G~GRvGq~var~L~~~gi~-~vviD~d~~~V~~~r~--------~G~~v-~yGDat~~~vL~~AGi~~Ar~vV 468 (615)
T PRK03562 399 QPRVIIAGFGRFGQIVGRLLLSSGVK-MVVLDHDPDHIETLRK--------FGMKV-FYGDATRMDLLESAGAAKAEVLI 468 (615)
T ss_pred CCCEEEEECCCCHHHHHHHHHHCCCC-EEEEECCHHHHHHHHH--------CCCEE-EEECCCCHHHHHHCCCCCCCEEE
T ss_conf 99989990280469999999978998-7999799999999996--------79908-97689999999867914068899
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHH-HHHHHHHHCCCCHHHHHHHCCCHHHHHHHH
Q ss_conf 9556666765574678998899999999765412667408871484207-899998844998656110005256899999
Q gi|254781048|r 77 VTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDA-MVWALQKFSGLPSHMVVGMAGILDSARFRY 155 (320)
Q Consensus 77 itag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv-~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~ 155 (320)
+|-.-| ....++.+.++++.|+-.+++=+- |. -++..++ .|- +.|+-= |.--+.++-.
T Consensus 469 iaidd~---------------~~~~~iv~~~r~~~P~l~IiaRar--d~~~~~~L~~-~Ga--~~vv~E-t~essL~l~~ 527 (615)
T PRK03562 469 NAIDDP---------------QTNLQLTELVKEHFPHLQIIARAR--DVDHYIRLRQ-AGV--EKPERE-TFEGALKSGR 527 (615)
T ss_pred EEECCH---------------HHHHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHH-CCC--CEEECC-HHHHHHHHHH
T ss_conf 994989---------------999999999997589986999839--7788999997-899--989666-5899999999
Q ss_pred HHHHHCCCCCCCCE
Q ss_conf 99997198733550
Q gi|254781048|r 156 FLAQEFGVSVESVT 169 (320)
Q Consensus 156 ~ia~~l~v~~~~V~ 169 (320)
..=+.+|.+|...+
T Consensus 528 ~~L~~lG~~~~~a~ 541 (615)
T PRK03562 528 LALESLGLGPYEAR 541 (615)
T ss_pred HHHHHCCCCHHHHH
T ss_conf 99998099999999
No 418
>PRK08339 short chain dehydrogenase; Provisional
Probab=90.52 E-value=1.5 Score=23.75 Aligned_cols=112 Identities=20% Similarity=0.216 Sum_probs=62.9
Q ss_pred CEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEE--ECCCH----------HHH
Q ss_conf 728998-89-81368999999957998699996578812898830762054468875685--26974----------883
Q gi|254781048|r 4 NKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLC--GTSDY----------SDI 69 (320)
Q Consensus 4 ~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~--~~~d~----------~~l 69 (320)
.|+++| |+ +.+|..+|..++..+. +++++|+++++++..+..+.... +...... -..+. .+.
T Consensus 8 gK~alITG~s~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGA-DVIILSRNEENLKRAKEKIKSES---DVEVHYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99899916260999999999998699-99999798899999999998504---985799984899999999999999956
Q ss_pred CCCCEEEEECCCCCCCC---CCHHH---HHHHHH----HHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 78978999556666765---57467---899889----99999997654126674088714
Q gi|254781048|r 70 AEADVCIVTAGIPRKPS---MSRDD---LLADNL----KAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 70 ~~aDivVitag~~~~~g---~~R~d---ll~~N~----~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
-..|++|..||.++... ++..+ .++.|. .+.+.+.+.+.+.+. |-+++++
T Consensus 84 g~~dilv~nag~~~~~~~~~~~~e~w~~~~~vnl~~~~~~~~~~~p~m~~~~~-G~II~is 143 (263)
T PRK08339 84 GDPDIFFFSTGGPKPGYFMEMSMEDWEEAVKLLLYPAVYLTRALVPGMERKGF-GRIIYST 143 (263)
T ss_pred CCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEC
T ss_conf 99989998999999989155999999999999869999999999876524389-6399955
No 419
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=90.51 E-value=0.75 Score=25.60 Aligned_cols=84 Identities=23% Similarity=0.292 Sum_probs=42.3
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHC-C-C-----CEEEEE---ECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHC
Q ss_conf 9987289988981368999999957-9-9-----869999---6578812898830762054468875685269748837
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLK-K-L-----GDVVLL---DIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIA 70 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~-~-l-----~ei~L~---D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~ 70 (320)
||+-||+|+|.|.||+.++..+..+ . + .++.+. |++..+.+ -.|+.... ..-.........+....+
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~ 77 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR--DLDLLNAE-VWTTDGALSLGDEVLLDE 77 (333)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC--CCCCCCHH-HHEECCCCCCCHHHHCCC
T ss_conf 954899998337142999999998268887632872699999961530113--56653323-430055324427665045
Q ss_pred CCCEEEEECCCCCCCCC
Q ss_conf 89789995566667655
Q gi|254781048|r 71 EADVCIVTAGIPRKPSM 87 (320)
Q Consensus 71 ~aDivVitag~~~~~g~ 87 (320)
+.|++|-..+....+++
T Consensus 78 ~~dvvve~~~~d~~~~~ 94 (333)
T COG0460 78 DIDVVVELVGGDVEPAE 94 (333)
T ss_pred CCCEEEECCCCCCCCHH
T ss_conf 68879855766687412
No 420
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=90.50 E-value=1.4 Score=23.81 Aligned_cols=107 Identities=19% Similarity=0.277 Sum_probs=59.2
Q ss_pred CEEEEECCCCHHHH-HHHHHHHCCCCE-----E---E--EEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCC
Q ss_conf 72899889813689-999999579986-----9---9--99657881289883076205446887568526974883789
Q gi|254781048|r 4 NKIALIGSGMIGGT-LAHLAVLKKLGD-----V---V--LLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEA 72 (320)
Q Consensus 4 ~KV~IIGaG~VG~~-~a~~~~~~~l~e-----i---~--L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~a 72 (320)
-||.++|.+.||.+ +......+...+ + . -+.++.. -..+.|.|++-...+. .-...-.+++
T Consensus 6 ~KivlvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~~~i~~~---~v~l~iwDTaGqe~f~-----~l~~~~y~~~ 77 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQ---RIELSLWDTSGSPYYD-----NVRPLSYPDS 77 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCE---EEEEEEEECCCCHHCC-----CCCHHHHCCC
T ss_conf 8999999999899999999983999998687353226899999999---9999999689862012-----2125551278
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHH
Q ss_conf 7899955666676557467899889999999976541266740887148420789
Q gi|254781048|r 73 DVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMV 127 (320)
Q Consensus 73 DivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~ 127 (320)
|.+++.-..-. .+-|+. +.+...+.+.+++|+..+++|.|=+|.-.
T Consensus 78 ~~~ilvydit~------~~Sf~~---v~~~W~~ei~~~~~~~~iiLVGnK~DLr~ 123 (182)
T cd04172 78 DAVLICFDISR------PETLDS---VLKKWKGEIQEFCPNTKMLLVGCKSDLRT 123 (182)
T ss_pred CEEEEEEECCC------HHHHHH---HHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 78999964897------788999---99999999998687998899961710124
No 421
>pfam01564 Spermine_synth Spermine/spermidine synthase. Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyses the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.
Probab=90.48 E-value=1.5 Score=23.73 Aligned_cols=111 Identities=14% Similarity=0.229 Sum_probs=61.5
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHH-CCCCCCCCEEEECCCHHHH---C-CCCEEE
Q ss_conf 9872899889813689999999579986999965788128988307620-5446887568526974883---7-897899
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAES-SPVEGFGAQLCGTSDYSDI---A-EADVCI 76 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~-~~~~~~~~~v~~~~d~~~l---~-~aDivV 76 (320)
.+++|-|||.|. |.++--++....+..+.++|++++..+.-..-+.+. .++.+-..++...+-.+=+ . .=|+||
T Consensus 75 ~pk~VLIiGGGD-G~~~rEvlk~~~v~~v~~VEiD~~Vv~~~~~~lp~~~~~~~dprv~l~~~Dg~~~l~~~~~~yDvII 153 (240)
T pfam01564 75 NPKKVLIIGGGD-GGALREVVKHPSVEKITLVEIDEKVIEFSKKFLPSLAGGFDDPRVKVVIGDGFKFLKDYLVKFDVII 153 (240)
T ss_pred CCCEEEEECCCC-HHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHCCCCCCEEE
T ss_conf 855367645865-7999998567995389997578899999999879852434798559998168999985725445899
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 955666676557467899889999999976541266740887148
Q gi|254781048|r 77 VTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITN 121 (320)
Q Consensus 77 itag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtN 121 (320)
+-.--|..|.. .|+ +.+.++.+-+.+ .|+|+++.-+.
T Consensus 154 ~D~~DP~~~~~---~Lf--s~eFy~~~~~~L---~~~Gi~v~Q~~ 190 (240)
T pfam01564 154 VDSTDPVGPAE---NLF--SKEFYDLLKRAL---KEDGVFVTQAE 190 (240)
T ss_pred EECCCCCCHHH---HHH--HHHHHHHHHHHC---CCCCEEEEECC
T ss_conf 95899765334---442--299999999865---99978999248
No 422
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=90.39 E-value=0.55 Score=26.49 Aligned_cols=35 Identities=31% Similarity=0.516 Sum_probs=27.3
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 9987289988981368999999957998699996578
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
|+. -|.|+|+|-||.++|..+...++ ++.++|..+
T Consensus 1 m~~-DV~IvGaGpvGl~lAl~L~~~G~-~v~lie~~~ 35 (405)
T PRK05714 1 MRA-DLLIVGAGMVGSALALALEGSGL-EVLLVDGGP 35 (405)
T ss_pred CCC-CEEEECCCHHHHHHHHHHHCCCC-CEEEEECCC
T ss_conf 998-89999905999999999961899-789995899
No 423
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=90.38 E-value=0.41 Score=27.33 Aligned_cols=56 Identities=21% Similarity=0.292 Sum_probs=22.9
Q ss_pred CCEEEEECC-CCCCCCCCHHH--HHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHH-HHHHHHHH
Q ss_conf 978999556-66676557467--8998899999999765412667408871484207-89999884
Q gi|254781048|r 72 ADVCIVTAG-IPRKPSMSRDD--LLADNLKAIEKVGAGIRKYAPNSFVICITNPLDA-MVWALQKF 133 (320)
Q Consensus 72 aDivVitag-~~~~~g~~R~d--ll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv-~~~~~~~~ 133 (320)
++-+||+.| .|+.|..-..+ ....|-.++ .+ +.-|+-++++=.-++-+ ++.++.++
T Consensus 132 a~~iiIATGs~P~~p~~~~~~~~~~~ts~~~l-----~l-~~lP~~l~IiGgG~Ig~E~A~~~~~l 191 (452)
T TIGR03452 132 GDQIVIAAGSRPYIPPAIADSGVRYHTNEDIM-----RL-PELPESLVIVGGGYIAAEFAHVFSAL 191 (452)
T ss_pred ECEEEECCCCCCCCCCCCCCCCCEEECCHHHH-----CC-HHCCCEEEEECCCHHHHHHHHHHHHC
T ss_conf 46699937998878887677898686556554-----33-00586699988868999999999961
No 424
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=90.38 E-value=0.55 Score=26.49 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=28.2
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 28998898136899999995799869999657881
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGM 39 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~ 39 (320)
||.|||+|-.|-++|..|..++-.++.+|++.++.
T Consensus 2 kV~IVGaGiaGL~lA~~L~r~g~i~V~V~Er~~~~ 36 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 89999944899999999985399988999428988
No 425
>COG1160 Predicted GTPases [General function prediction only]
Probab=90.33 E-value=1.5 Score=23.65 Aligned_cols=136 Identities=18% Similarity=0.301 Sum_probs=71.8
Q ss_pred CCCCEEEEECCCCHH-HHHHHHHHHCCCCEEEEEEC----CCCCHHHHHH--H----HHHHCCCCCCC----CEEEECCC
Q ss_conf 998728998898136-89999999579986999965----7881289883--0----76205446887----56852697
Q gi|254781048|r 1 MKSNKIALIGSGMIG-GTLAHLAVLKKLGDVVLLDI----VDGMPRGKAL--D----IAESSPVEGFG----AQLCGTSD 65 (320)
Q Consensus 1 mk~~KV~IIGaG~VG-~~~a~~~~~~~l~ei~L~D~----~~~~~~g~~~--D----l~~~~~~~~~~----~~v~~~~d 65 (320)
|.+..|+|+|-=||| +++-+.+..+.. .+++- +.++..+.+. + +-|+.-+.+.. ........
T Consensus 1 m~~~~VAIVGRPNVGKSTLFNRL~g~r~---AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa 77 (444)
T COG1160 1 MSTPVVAIVGRPNVGKSTLFNRLTGRRI---AIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQA 77 (444)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCEE---EEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 9977899989998758999988757702---6760699975577545069838607999789977688128999999999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHH-----HHHHHHHCCCC---
Q ss_conf 4883789789995566667655746789988999999997654126674088714842078-----99998844998---
Q gi|254781048|r 66 YSDIAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAM-----VWALQKFSGLP--- 137 (320)
Q Consensus 66 ~~~l~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~-----~~~~~~~sg~~--- 137 (320)
..++..||++++..-. +.|.|-.| +++++.+++. +--+++|.|-+|.. .+.+|.+ ||.
T Consensus 78 ~~Ai~eADvilfvVD~--~~Git~~D---------~~ia~~Lr~~--~kpviLvvNK~D~~~~e~~~~efysl-G~g~~~ 143 (444)
T COG1160 78 LIAIEEADVILFVVDG--REGITPAD---------EEIAKILRRS--KKPVILVVNKIDNLKAEELAYEFYSL-GFGEPV 143 (444)
T ss_pred HHHHHHCCEEEEEEEC--CCCCCHHH---------HHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHHHC-CCCCCE
T ss_conf 9999767999999848--87899789---------9999999853--99889999766673045648999864-789826
Q ss_pred ---HHHHHHHCCCHHHHHH
Q ss_conf ---6561100052568999
Q gi|254781048|r 138 ---SHMVVGMAGILDSARF 153 (320)
Q Consensus 138 ---~~rViG~Gt~LDs~R~ 153 (320)
..+-.|++.+||...-
T Consensus 144 ~ISA~Hg~Gi~dLld~v~~ 162 (444)
T COG1160 144 PISAEHGRGIGDLLDAVLE 162 (444)
T ss_pred EEEHHHCCCHHHHHHHHHH
T ss_conf 8425535698999999997
No 426
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=90.33 E-value=0.56 Score=26.43 Aligned_cols=34 Identities=32% Similarity=0.346 Sum_probs=29.2
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 98728998898136899999995799869999657
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIV 36 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~ 36 (320)
+..+|.|||+|-+|.++|.++...+ -++.|++..
T Consensus 1 ~~~dV~IvGaG~aGl~lA~~L~~~G-~~V~liE~~ 34 (387)
T COG0654 1 KMLDVAIVGAGPAGLALALALARAG-LDVTLLERA 34 (387)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECC
T ss_conf 9854999997899999999998289-968999077
No 427
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=90.31 E-value=0.66 Score=25.98 Aligned_cols=110 Identities=17% Similarity=0.222 Sum_probs=57.0
Q ss_pred CEEEEECCCCHH-HHHHHHHHHCCCCE-----E-EEEECCCCCHHH--HHHHHHHHCCCCCCCCEEEECCCHHHHCCCCE
Q ss_conf 728998898136-89999999579986-----9-999657881289--88307620544688756852697488378978
Q gi|254781048|r 4 NKIALIGSGMIG-GTLAHLAVLKKLGD-----V-VLLDIVDGMPRG--KALDIAESSPVEGFGAQLCGTSDYSDIAEADV 74 (320)
Q Consensus 4 ~KV~IIGaG~VG-~~~a~~~~~~~l~e-----i-~L~D~~~~~~~g--~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDi 74 (320)
+||.++|.+.|| +++......+...+ + .-+........| ..+.+.|++....+ ..-...-.++||.
T Consensus 1 ~KivlvGd~~VGKTsli~r~~~~~F~~~~~pTi~~~~~~~~~~~~~~~v~l~iwDtaG~e~~-----~~l~~~~~~~a~~ 75 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEY-----DRLRPLSYPDVDV 75 (187)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCCC-----CCCHHHHHHHCCE
T ss_conf 98999994997699999999639899975896647999999954998999999969997110-----5343445300348
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHH
Q ss_conf 99955666676557467899889999999976541266740887148420789
Q gi|254781048|r 75 CIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMV 127 (320)
Q Consensus 75 vVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~ 127 (320)
+++.-....+ .. ++ |+. ....+.+.+++|+.-+++|.|=+|...
T Consensus 76 ~ilvydit~~-----~S-f~-~i~--~~W~~~i~~~~~~~piilVgnK~DL~~ 119 (187)
T cd04132 76 LLICYAVDNP-----TS-LD-NVE--DKWFPEVNHFCPGTPIMLVGLKTDLRK 119 (187)
T ss_pred EEEEECCCCH-----HH-HH-HHH--HHHHHHHHHHCCCCCEEEEEECCHHHH
T ss_conf 8895036876-----77-99-999--999999998689999799998722122
No 428
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=90.26 E-value=0.61 Score=26.21 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=27.8
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 998728998898136899999995799869999657
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIV 36 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~ 36 (320)
|+..-|.|||+|--|.++|..++..+. ++.+++..
T Consensus 4 m~~YDviVIGaGpaG~~aA~~aa~~G~-kV~viE~~ 38 (465)
T PRK05249 4 MYDYDAVVIGSGPAGEGAAMQAAKLGK-RVAVIERY 38 (465)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
T ss_conf 777898999977899999999997899-29999769
No 429
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=90.22 E-value=1.5 Score=23.59 Aligned_cols=130 Identities=14% Similarity=0.156 Sum_probs=64.4
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECC
Q ss_conf 99872899889813689999999579986999965788128988307620544688756852697488378978999556
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag 80 (320)
++.+||.|||.|.|+..=+..++..+ +.+.++-..- .. ...++.+. +.-..+...-.++++.++++|+.+.+
T Consensus 8 l~gk~vLVVGGG~vA~rK~~~Ll~~g-A~VtVvsp~~--~~-el~~l~~~----~~i~~~~~~~~~~dl~~~~lViaAT~ 79 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYG-AHITVISPEI--TE-NLVKLVEE----GKIRWKEKEFEPSDIVDAFLVIAATN 79 (202)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCC--CH-HHHHHHHC----CCCEEEECCCCHHHHCCCCEEEECCC
T ss_conf 28986999889899999999998689-9699986999--98-99999976----99447616788667516704455279
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC--HHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 6667655746789988999999997654126674088714842--07899998844998656110005256899999999
Q gi|254781048|r 81 IPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPL--DAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLA 158 (320)
Q Consensus 81 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPv--Dv~~~~~~~~sg~~~~rViG~Gt~LDs~R~~~~ia 158 (320)
-+ ..|..+.+. .++ +.++-++.||- |......-+... =+|+..|.=-|-.+-+.|-
T Consensus 80 d~-----------~~N~~i~~~----~~~---~~lvNvvD~p~~~dFi~Paiv~rg~----l~IaIST~G~SP~lAr~iR 137 (202)
T PRK06718 80 DP-----------RVNEAVAEA----LPE---NALFNVIGDAESGNVVFPSALHRGK----LTISVSTDGASPKLAKKIR 137 (202)
T ss_pred CH-----------HHHHHHHHH----HHH---CCCEEECCCCCCCEEEEEEEEEECC----EEEEEECCCCCHHHHHHHH
T ss_conf 89-----------999999998----654---4875755786548278742785299----8999988997839999999
Q ss_pred HH
Q ss_conf 97
Q gi|254781048|r 159 QE 160 (320)
Q Consensus 159 ~~ 160 (320)
++
T Consensus 138 ~~ 139 (202)
T PRK06718 138 DE 139 (202)
T ss_pred HH
T ss_conf 99
No 430
>PRK09242 tropinone reductase; Provisional
Probab=90.20 E-value=1.5 Score=23.58 Aligned_cols=117 Identities=17% Similarity=0.138 Sum_probs=65.6
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHH-----------H
Q ss_conf 9872899889-813689999999579986999965788128988307620544688756852697488-----------3
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSD-----------I 69 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~-----------l 69 (320)
+.+++.|.|+ +.+|..+|..++..+. +++++|++++.++....++.....-........-..|.++ .
T Consensus 9 ~gK~alITGgs~GIG~a~a~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 87 (258)
T PRK09242 9 DGQTALITGASKGIGLAIARELLGLGA-DVLIVARDADALAQARDELAEEFPERELHGLAADVSDDEDRRAILDWVEDHW 87 (258)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 999999948486899999999998799-8999969889999999999864479729999930799999999999999974
Q ss_pred CCCCEEEEECCCCCC-CC--CCHH---HHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 789789995566667-65--5746---78998899----9999997654126674088714
Q gi|254781048|r 70 AEADVCIVTAGIPRK-PS--MSRD---DLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 70 ~~aDivVitag~~~~-~g--~~R~---dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
..-|++|-.||.... +- ++.. ..++.|.. +.+...+.+++.. .|.+|.++
T Consensus 88 g~iDiLVnnAG~~~~~~~~~~s~~~w~~~~~vNl~~~~~l~~~~~p~m~~~~-~G~IInis 147 (258)
T PRK09242 88 DGLHILVNNAGGNITKAAIDYTEDEWRGIFETNLFSAFELSRYAYPLLKRHA-ASSIVNIG 147 (258)
T ss_pred CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEE
T ss_conf 9997999899889999800199999999999981999999999999999759-92799993
No 431
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=90.11 E-value=1.6 Score=23.53 Aligned_cols=115 Identities=23% Similarity=0.242 Sum_probs=67.6
Q ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCC--------HHHHCCC
Q ss_conf 9872899889-813689999999579986999965788128988307620544688756852697--------4883789
Q gi|254781048|r 2 KSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSD--------YSDIAEA 72 (320)
Q Consensus 2 k~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d--------~~~l~~a 72 (320)
|.+++-|.|+ +.+|..+|..++..+ +.+.+.|+++++++..+.++.+...++... +....+ .+.+..-
T Consensus 5 ~gK~alITG~s~GIG~aia~~~a~~G-a~V~i~~~~~~~~~~~~~~~~~~~~~~~~D--v~~~~~v~~~~~~~~~~~g~i 81 (245)
T PRK12936 5 TGRKALVTGASGGIGEEIARLLHAQG-AIVGLHGTRVEKLEALAAELGERVKIFPAN--LSDRDEVKALGQKAEADLEGV 81 (245)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHCCCEEEEECC--CCCHHHHHHHHHHHHHHCCCC
T ss_conf 99989992747689999999999869-999998299999999999838966999913--799999999999999975999
Q ss_pred CEEEEECCCCCCCC---CCH---HHHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 78999556666765---574---678998899----9999997654126674088714
Q gi|254781048|r 73 DVCIVTAGIPRKPS---MSR---DDLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 73 DivVitag~~~~~g---~~R---~dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
|++|-.||...... ++- ...+..|.. ..+.+.+.+.+.. +|-++.++
T Consensus 82 DiLINnAG~~~~~~~~~~~~e~w~~~~~vNl~~~f~~~~~~~~~m~k~~-~G~IInis 138 (245)
T PRK12936 82 DILVNNAGITKDGLFVRMSDEDWDAVLEVNLTAVFRLTRELTHPMMRRR-YGRIINIT 138 (245)
T ss_pred CEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEC
T ss_conf 6999899889999812099999999999981999999999999998748-85599973
No 432
>PRK06185 hypothetical protein; Provisional
Probab=90.10 E-value=0.63 Score=26.11 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=30.2
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 99872899889813689999999579986999965788
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDG 38 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~ 38 (320)
|++.-|.|||+|-+|.++|+++...++ ++.+++...+
T Consensus 4 ~~~tDV~IVGaGpaGL~lAl~Lar~Gi-~V~VlEk~~~ 40 (409)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGV-DVTVLEKHAD 40 (409)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEECCCCC
T ss_conf 878998999918899999999997799-9999918999
No 433
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=90.10 E-value=1.6 Score=23.52 Aligned_cols=70 Identities=24% Similarity=0.248 Sum_probs=41.7
Q ss_pred CCEEEEECC-CCHHHHHHHHHHHCCCCE-EEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHH-HCCCCEEE
Q ss_conf 872899889-813689999999579986-999965788128988307620544688756852697488-37897899
Q gi|254781048|r 3 SNKIALIGS-GMIGGTLAHLAVLKKLGD-VVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSD-IAEADVCI 76 (320)
Q Consensus 3 ~~KV~IIGa-G~VG~~~a~~~~~~~l~e-i~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~-l~~aDivV 76 (320)
.-||+|.|+ |+.|+.++-.+....-.+ ...+|+......| .|+........... ...+++++ +.++|++|
T Consensus 2 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~l~~~i~~~~~~~~g--~~~~~~~~~~~~~~--~~~~~l~~~~~~~DVvI 74 (265)
T PRK00048 2 MIKVGVAGASGRMGRELIEAVEAAEDLELVAALDRPGSPLVG--QDAGELAGLGKLGV--PITDDLEAVLDDFDVLI 74 (265)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC--CCHHHHCCCCCCCC--EECCCHHHHHCCCCEEE
T ss_conf 459999888887799999999868997999999468972336--53566527676784--31178988605599899
No 434
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=90.05 E-value=1.6 Score=23.50 Aligned_cols=105 Identities=22% Similarity=0.304 Sum_probs=57.1
Q ss_pred EEEEECCCCHHHH-HHHHHHHCCCCE-------EEEEECCCCCHHH--HHHHHHHHCCCCCCCCEEEECCCHHHHCCCCE
Q ss_conf 2899889813689-999999579986-------9999657881289--88307620544688756852697488378978
Q gi|254781048|r 5 KIALIGSGMIGGT-LAHLAVLKKLGD-------VVLLDIVDGMPRG--KALDIAESSPVEGFGAQLCGTSDYSDIAEADV 74 (320)
Q Consensus 5 KV~IIGaG~VG~~-~a~~~~~~~l~e-------i~L~D~~~~~~~g--~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDi 74 (320)
||.++|-+.||.+ +......+...+ +-++... -...+ ..+++.|++-. ....+-...-.++|+.
T Consensus 2 KivllGd~~VGKTsli~r~~~~~f~~~~~~Tig~~~~~~~-~~~~~~~~~l~iwDtaG~-----e~f~~~~~~y~~~a~~ 75 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHN-AKFEGKTILVDFWDTAGQ-----ERFQTMHASYYHKAHA 75 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEE-EEECCEEEEEEEEECCCC-----CCCCHHHHHHHCCCCE
T ss_conf 8999998996789999999809779972665415799999-999999999999979998-----4343246997356876
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHH
Q ss_conf 999556666765574678998899999999765412667408871484207
Q gi|254781048|r 75 CIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDA 125 (320)
Q Consensus 75 vVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv 125 (320)
+++.--.. +.+-++ | ++...+.+.+++|+.-+++|.|=+|.
T Consensus 76 ~ilvfDit------~~~Sf~-~---~~~w~~~i~~~~~~~p~ilVgNK~DL 116 (161)
T cd04124 76 CILVFDVT------RKITYK-N---LSKWYEELREYRPEIPCIVVANKIDL 116 (161)
T ss_pred EEEEEECC------CHHHHH-H---HHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 79999689------778899-9---99999999986869989999997117
No 435
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=90.03 E-value=1.6 Score=23.49 Aligned_cols=36 Identities=25% Similarity=0.244 Sum_probs=26.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 9872899889813689999999579986999965788
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDG 38 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~ 38 (320)
..++++|||.|++|+.+|..+.--+ .++.-||....
T Consensus 137 ~gktlGIiG~G~IG~~vA~~~~~fg-m~Vi~yDP~~~ 172 (524)
T PRK13581 137 YGKTLGVIGLGRIGSEVAKRAKAFG-MKVIAYDPYIS 172 (524)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEECCCCC
T ss_conf 6988999776757899999998549-74788777644
No 436
>KOG2336 consensus
Probab=90.00 E-value=0.37 Score=27.64 Aligned_cols=36 Identities=22% Similarity=0.443 Sum_probs=30.9
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 987289988981368999999957998699996578
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
+..-|+|+|.|.||+..|--+...++..+.|+|-+.
T Consensus 81 R~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDk 116 (422)
T KOG2336 81 REFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK 116 (422)
T ss_pred HHHEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf 654158983275227799998761766078861334
No 437
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=89.97 E-value=1.6 Score=23.46 Aligned_cols=150 Identities=20% Similarity=0.249 Sum_probs=98.3
Q ss_pred CCEEEEECCC--CHHHH------HHHHH-HHCCC-CEEEEEECCCCCHHHHH--HHHHHHCCCCCCCCEEEECCCHHHHC
Q ss_conf 8728998898--13689------99999-95799-86999965788128988--30762054468875685269748837
Q gi|254781048|r 3 SNKIALIGSG--MIGGT------LAHLA-VLKKL-GDVVLLDIVDGMPRGKA--LDIAESSPVEGFGAQLCGTSDYSDIA 70 (320)
Q Consensus 3 ~~KV~IIGaG--~VG~~------~a~~~-~~~~l-~ei~L~D~~~~~~~g~~--~Dl~~~~~~~~~~~~v~~~~d~~~l~ 70 (320)
++||.|||+| ++|+. +.+++ +++.. .|-+++.=|++ .+. .|..|-..|.+.....+ =|.=+..
T Consensus 573 Kk~~lvlGSGp~RIGqgvEFDYc~Vh~~~aLr~~Gye~ImiN~NPE---TVSTDyD~sDrLYFEplt~E~V--m~I~e~E 647 (1089)
T TIGR01369 573 KKKVLVLGSGPNRIGQGVEFDYCCVHAVLALREAGYETIMINYNPE---TVSTDYDTSDRLYFEPLTFEDV--MNIIELE 647 (1089)
T ss_pred CCEEEEECCCCEECCCCEEEHHHHHHHHHHHHHCCCEEEEEECCCC---CCCCCHHHHHHCCCCCCCCCCC--EEHEEEC
T ss_conf 8568998784514066312056789999999872995999977899---7436666510115876350310--0110005
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-CEEEECCCCHH-HH------HHHHHHCCCCHHHHH
Q ss_conf 89789995566667655746789988999999997654126674-08871484207-89------999884499865611
Q gi|254781048|r 71 EADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNS-FVICITNPLDA-MV------WALQKFSGLPSHMVV 142 (320)
Q Consensus 71 ~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~-i~ivvtNPvDv-~~------~~~~~~sg~~~~rVi 142 (320)
+++-||+-.|-+ + --++|..+.+ +| +-|+=|+|-++ ++ +.+.+.-|.|--+.
T Consensus 648 ~~~GVIVq~GGQ-----t-----------p~nlA~~L~~---~GG~~iLGTS~~~ID~AEDR~kFs~~l~~Lgi~QP~~- 707 (1089)
T TIGR01369 648 KPEGVIVQFGGQ-----T-----------PLNLAKELEE---AGGVPILGTSPESIDRAEDREKFSELLDELGIPQPEW- 707 (1089)
T ss_pred CCCEEEEECCCH-----H-----------HHHHHHHHHH---CCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCC-
T ss_conf 866799974873-----2-----------6789999997---0893173688578751318679999997158798988-
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEE
Q ss_conf 0005256899999999971987335505675078852465
Q gi|254781048|r 143 GMAGILDSARFRYFLAQEFGVSVESVTALVLGSHGDSMVP 182 (320)
Q Consensus 143 G~Gt~LDs~R~~~~ia~~l~v~~~~V~~~ViGeHGds~vp 182 (320)
.+.|++|.++- .|+..|.+.===-.|||| |-.|-.
T Consensus 708 ~~a~s~eea~~---~A~~iGYPvlvRPSYVLg--G~aM~i 742 (1089)
T TIGR01369 708 KIATSVEEAKE---FASEIGYPVLVRPSYVLG--GRAMEI 742 (1089)
T ss_pred CEECCHHHHHH---HHHHCCCCEEECCCCCCC--CCCHHE
T ss_conf 52728799999---985469928981683003--362100
No 438
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=89.95 E-value=1.6 Score=23.45 Aligned_cols=111 Identities=19% Similarity=0.234 Sum_probs=57.5
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHH----CCCCEEEEE
Q ss_conf 8728998898136899999995799869999657881289883076205446887568526974883----789789995
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDI----AEADVCIVT 78 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l----~~aDivVit 78 (320)
..+|+|||+|+.|.-++..+..-++ ++..+|.+++-.-++..|-. .+...+|.+++ +.||+|.+-
T Consensus 7 ~~tIGIlGgGQLgrMla~aA~~lG~-~v~vldp~~~~PA~~va~~~----------~~~~~~D~~al~~fa~~~DviT~E 75 (377)
T PRK06019 7 GKTIGIIGGGQLGRMLALAAAPLGY-KVIVLDPDADCPAAQVADRV----------IVADYDDVAALRELAEQCDVITYE 75 (377)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCCCHHHHCCEE----------EECCCCCHHHHHHHHHCCCEEEEC
T ss_conf 9999998786899999999997899-89998489849847837848----------986889899999998459999978
Q ss_pred CC-C------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHH
Q ss_conf 56-6------------6676557467899889999999976541266740887148420789
Q gi|254781048|r 79 AG-I------------PRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMV 127 (320)
Q Consensus 79 ag-~------------~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~ 127 (320)
-. + +-.|+-.-+.+ ..|...-|++..... -|-+-+..+.++-|+..
T Consensus 76 ~EnI~~~~L~~le~~~~v~P~~~al~i-~QdR~~eK~~l~~lg--iptapf~~v~s~~dl~~ 134 (377)
T PRK06019 76 FENVPAEALDLLAARVPVPPGPDALAI-AQDRLTEKQFLDELG--IPVAPFALVDSAEDLDA 134 (377)
T ss_pred CCCCCHHHHHHHHHCCCCCCCHHHHHH-HHHHHHHHHHHHHCC--CCCCCEEEECCHHHHHH
T ss_conf 176899999999708966879899998-862799999999769--99888067189999999
No 439
>PRK09186 flagellin modification protein A; Provisional
Probab=89.93 E-value=1.6 Score=23.44 Aligned_cols=114 Identities=21% Similarity=0.187 Sum_probs=65.7
Q ss_pred CCCEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEE--ECCCH-----------
Q ss_conf 98728998-89-81368999999957998699996578812898830762054468875685--26974-----------
Q gi|254781048|r 2 KSNKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLC--GTSDY----------- 66 (320)
Q Consensus 2 k~~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~--~~~d~----------- 66 (320)
=+.|+++| |+ +.+|..++..++..+ +.+++.|++.++++..+.++...- +...... -.++.
T Consensus 2 L~gK~~lVTGgs~GIG~aia~~la~~G-a~V~~~~~~~~~~~~~~~~l~~~~---~~~v~~~~~Dvt~~~~v~~~~~~~~ 77 (255)
T PRK09186 2 LEGKTILITGAGGLIGSALVKAILEAG-GIVIAADINKEALNKLLESLGTIE---KTKLTLVELDITDQESLEEFLSKSQ 77 (255)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHC---CCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 895989997958689999999999879-999999698899999999998705---9807999846899999999999999
Q ss_pred HHHCCCCEEEEECCCCCC------CCCCHHH---HHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 883789789995566667------6557467---8998899----9999997654126674088714
Q gi|254781048|r 67 SDIAEADVCIVTAGIPRK------PSMSRDD---LLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 67 ~~l~~aDivVitag~~~~------~g~~R~d---ll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
+.+-.-|++|-.|+.... ...+..+ .+..|.. ..+.+.+.+++.. .|-++.++
T Consensus 78 ~~~g~id~lVnnA~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~-~G~IVnis 143 (255)
T PRK09186 78 ERYGKIDGAVNCAYPRNKQYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQG-GGSLVNIS 143 (255)
T ss_pred HHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCEEEEC
T ss_conf 9819977899757667876777701099999999999983999999999999887428-97389956
No 440
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=89.92 E-value=0.31 Score=28.11 Aligned_cols=37 Identities=24% Similarity=0.211 Sum_probs=29.7
Q ss_pred CCCC--EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 9987--2899889813689999999579986999965788
Q gi|254781048|r 1 MKSN--KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDG 38 (320)
Q Consensus 1 mk~~--KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~ 38 (320)
||+. -|.|+|+|-+|.++|..+...++ ++.|+|....
T Consensus 1 M~~~~~DV~IvGaGp~Gl~lAl~La~~G~-~v~lie~~~~ 39 (386)
T PRK07494 1 MEKEHTDIAVSGGGPAGLAAAIALASAGA-SVALVAPAPP 39 (386)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCC
T ss_conf 99788868999906899999999987899-8899957998
No 441
>PRK06184 hypothetical protein; Provisional
Probab=89.89 E-value=0.59 Score=26.30 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=28.9
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 872899889813689999999579986999965788
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDG 38 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~ 38 (320)
+.-|.|||+|-||.++|.+|...++ +..++|..+.
T Consensus 6 tTDVlIVGaGPvGL~lA~~La~~Gi-~v~viEr~~~ 40 (503)
T PRK06184 6 TTDVLIVGAGPTGLTLAIELARRGV-SFRLIEKSPT 40 (503)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCC
T ss_conf 5798999909999999999997799-8999948999
No 442
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; InterPro: IPR010971 This entry represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway . A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions . In Escherichia coli, three enzyme activities have been described: UbiB (which acts first at position 6, see IPR010232 from INTERPRO), UbiH (which acts at position 4, ) and UbiF (which acts at position 5, ). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB) . Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homologue in this subfamily (COQ6, ) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050660 FAD binding, 0006744 ubiquinone biosynthetic process.
Probab=89.86 E-value=0.45 Score=27.03 Aligned_cols=191 Identities=16% Similarity=0.126 Sum_probs=88.2
Q ss_pred EEEECCCCHHHHHHHHHHHCC--CC--EEEEEECCCCC-----HHHHHHHHH------------------HHCCC-CCCC
Q ss_conf 899889813689999999579--98--69999657881-----289883076------------------20544-6887
Q gi|254781048|r 6 IALIGSGMIGGTLAHLAVLKK--LG--DVVLLDIVDGM-----PRGKALDIA------------------ESSPV-EGFG 57 (320)
Q Consensus 6 V~IIGaG~VG~~~a~~~~~~~--l~--ei~L~D~~~~~-----~~g~~~Dl~------------------~~~~~-~~~~ 57 (320)
|.|||+|.||.++|..|...+ .. .+.|+|..... ...-..|.. +...- ....
T Consensus 2 i~IvGgG~VG~~lA~aL~~~~~~~~~L~~~l~e~~~~~~~~~~~~~~~~D~R~~Al~~~S~~~L~~lG~W~~~~~~~~~p 81 (445)
T TIGR01988 2 IVIVGGGMVGLALALALASSGSRLKGLKVALIEAQPAEAPSFFAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQP 81 (445)
T ss_pred EEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCHHHHHHHCCC
T ss_conf 68884738899999998418631247317996052114422112587655220101079999998679644520121263
Q ss_pred CEEEECCCHHHHCCC-----CEEEEECCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHH
Q ss_conf 568526974883789-----78999556666765--57467899889999999976541266740887148420789999
Q gi|254781048|r 58 AQLCGTSDYSDIAEA-----DVCIVTAGIPRKPS--MSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWAL 130 (320)
Q Consensus 58 ~~v~~~~d~~~l~~a-----DivVitag~~~~~g--~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~ 130 (320)
......-| ..... -.+-+.+.. -| .+-+...-+|..|.+.+-+.+.++ || ..+....|..+-+...
T Consensus 82 ~~~~~V~D--~~~~g~~~~P~~~~F~~~~---~~~~~~~LG~~ven~~~~~aL~~~~~~~-~~-~~~~~~~~~~~~~~~~ 154 (445)
T TIGR01988 82 IRDIHVSD--GGSFGRAPHPAALHFDADE---VGGPAEALGYVVENRVLQQALWEALQEL-PN-EKVTLLCPARVEELPR 154 (445)
T ss_pred CCEEEEEE--CCCCCCCCCCEEEEECHHH---CCCCCCCCCEEECHHHHHHHHHHHHHHC-CC-CEEEEECCCEEEEEEC
T ss_conf 20488872--6788888886368744344---1788011236711889999999999966-89-6477516721477403
Q ss_pred H-------HH-CCCCHHHH---HHHCCCH--HHHHHHHHHHHHCCCCCCCC-E----E---EEECCCCCEEEEECCCCCC
Q ss_conf 8-------84-49986561---1000525--68999999999719873355-0----5---6750788524651023544
Q gi|254781048|r 131 Q-------KF-SGLPSHMV---VGMAGIL--DSARFRYFLAQEFGVSVESV-T----A---LVLGSHGDSMVPMLRYATV 189 (320)
Q Consensus 131 ~-------~~-sg~~~~rV---iG~Gt~L--Ds~R~~~~ia~~l~v~~~~V-~----~---~ViGeHGds~vp~~S~~~v 189 (320)
. .. --+...+. +-+=-.. |.. ++-+.+.+||+...- + + .|==|+ +++-..|-+-..
T Consensus 155 ~~~~~~~~~v~~~L~~G~~~~~l~a~LlvgADG~--~S~vR~~~gI~~~~~R~Y~Q~a~Va~v~~~~-~h~~~A~erF~~ 231 (445)
T TIGR01988 155 HSSKNDSDEVELTLSDGRQKLLLRARLLVGADGA--NSKVRQLAGIPTTGWRDYGQSAVVANVKHER-PHQGTAWERFLP 231 (445)
T ss_pred CCCCCCCCCEEEEECCCCEEEEEEECEEEEECCC--CHHHHHHHCCCCCEEECCCCEEEEEEEEECC-CCCCEEEEEEEC
T ss_conf 6775688607999708947678985327873586--5257997188843011645538999997147-889647999827
Q ss_pred -CC----CHHH----HHHHCCCCCHH
Q ss_conf -77----0155----43001587876
Q gi|254781048|r 190 -SG----IPVS----DLVKLGWTTQE 206 (320)
Q Consensus 190 -~g----~p~~----~~~~~~~~~~~ 206 (320)
.| .|+. ..+...|....
T Consensus 232 ~~GP~AlLPL~~~dd~~~slVW~~~~ 257 (445)
T TIGR01988 232 DTGPLALLPLPDNDDNRSSLVWTLPP 257 (445)
T ss_pred CCCCEEECCCCCCCCCEEEEEEECCH
T ss_conf 99857873588888960389973897
No 443
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.82 E-value=1.7 Score=23.38 Aligned_cols=141 Identities=16% Similarity=0.237 Sum_probs=70.9
Q ss_pred CCEEEEECCCCHHH--HHHHHHH---HCC--C-CEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECC-C----HHHH
Q ss_conf 87289988981368--9999999---579--9-8699996578812898830762054468875685269-7----4883
Q gi|254781048|r 3 SNKIALIGSGMIGG--TLAHLAV---LKK--L-GDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTS-D----YSDI 69 (320)
Q Consensus 3 ~~KV~IIGaG~VG~--~~a~~~~---~~~--l-~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~-d----~~~l 69 (320)
++-++.+|--.||. |+|-+++ +.. - -.+.|+-.+.=+.-|..+ |..-+...+.+..+.... | ...+
T Consensus 174 ~~vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQ-Lktya~il~vp~~v~~~~~dl~~~l~~~ 252 (388)
T PRK12723 174 KRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ-IQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHH-HHHHHHHHCCCEEEECCHHHHHHHHHHH
T ss_conf 628999899887578799999999998626767737999807875889999-9999999788069857889999999972
Q ss_pred CCCCEEEE-ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-CCEEEE--CCCCHHHHHHHHHHCCCCHHHHHHHC
Q ss_conf 78978999-556666765574678998899999999765412667-408871--48420789999884499865611000
Q gi|254781048|r 70 AEADVCIV-TAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPN-SFVICI--TNPLDAMVWALQKFSGLPSHMVVGMA 145 (320)
Q Consensus 70 ~~aDivVi-tag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~-~i~ivv--tNPvDv~~~~~~~~sg~~~~rViG~G 145 (320)
+++|+|+| |||...+. ..-+.++...+...+|+ -+++++ |.=...+..++.+++.++.+++|=
T Consensus 253 ~~~D~IlIDTAGrs~~d-----------~~~~~el~~~~~~~~~~~~~~Lvlsat~~~~d~~~i~~~f~~~~~~~~I~-- 319 (388)
T PRK12723 253 KDFDLVLIDTIGKSPKD-----------FMKLAEMKELLNACGRDAEFHLAVSSTTKTSDIKEIFHQFSPFSYKTVIF-- 319 (388)
T ss_pred CCCCEEEEECCCCCCCC-----------HHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEE--
T ss_conf 49999999589988568-----------99999999999741898459999879899999999999842799984999--
Q ss_pred CCHH-HHHHHHHH
Q ss_conf 5256-89999999
Q gi|254781048|r 146 GILD-SARFRYFL 157 (320)
Q Consensus 146 t~LD-s~R~~~~i 157 (320)
|=|| |.++-.++
T Consensus 320 TKlDEt~~~G~~l 332 (388)
T PRK12723 320 TKLDETTCVGNLI 332 (388)
T ss_pred EECCCCCCCCHHH
T ss_conf 8322789866999
No 444
>TIGR00137 gid gid protein; InterPro: IPR004417 The gid proteins are present in relatively few bacteria but very tightly conserved where they occur. The function of these proteins is unknown. They are closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae..
Probab=89.81 E-value=0.21 Score=29.17 Aligned_cols=133 Identities=18% Similarity=0.279 Sum_probs=74.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHH-H-HHHHHHH--HCCCCCCCCEEEECCCH-HHHCCCCEEEEE
Q ss_conf 72899889813689999999579986999965788128-9-8830762--05446887568526974-883789789995
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPR-G-KALDIAE--SSPVEGFGAQLCGTSDY-SDIAEADVCIVT 78 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~-g-~~~Dl~~--~~~~~~~~~~v~~~~d~-~~l~~aDivVit 78 (320)
.||.|||+|--|+-.|--++..++ .+.||...+.|.. + +.-||.. |+.-++...-....+-. ++++.-|=.||+
T Consensus 1 ~~v~VIGgGLAGsEAAWqlA~~G~-~ViLyEMRP~k~tPAH~t~~lAELVCSNslg~~~l~~aaGlLk~Emr~L~SliI~ 79 (444)
T TIGR00137 1 EKVIVIGGGLAGSEAAWQLAKEGV-RVILYEMRPKKLTPAHHTEDLAELVCSNSLGAKELARAAGLLKEEMRKLDSLIIE 79 (444)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCC-CEEEEECCCCCCCCCCCCCCCEEEEECCHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 936897188534689999984897-2799753876577876666602232021011010120123689998863079998
Q ss_pred C----CCCCCC--CCCHHHHHHH------HHHHHHHHHHHHHHCCCCCCEEEECCCC--HHHHHHHHHHCCCC
Q ss_conf 5----666676--5574678998------8999999997654126674088714842--07899998844998
Q gi|254781048|r 79 A----GIPRKP--SMSRDDLLAD------NLKAIEKVGAGIRKYAPNSFVICITNPL--DAMVWALQKFSGLP 137 (320)
Q Consensus 79 a----g~~~~~--g~~R~dll~~------N~~i~~~i~~~i~~~~p~~i~ivvtNPv--Dv~~~~~~~~sg~~ 137 (320)
| .+|... +.+|...... |-+.+.=+-+.+.+.--++++|+.|-|. |.++.-+++++|++
T Consensus 80 aAd~~~VPAGGALaVDR~iFs~s~Te~v~sHPnv~lireEV~EIPe~~~tviaTGPLTS~aLse~lkeltG~d 152 (444)
T TIGR00137 80 AADEAAVPAGGALAVDRKIFSESVTEKVKSHPNVTLIREEVTEIPEEEVTVIATGPLTSEALSEKLKELTGED 152 (444)
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCH
T ss_conf 7653368988520112789999887764128845887164005159970798638888278899998750630
No 445
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=89.80 E-value=1.7 Score=23.37 Aligned_cols=106 Identities=19% Similarity=0.227 Sum_probs=58.6
Q ss_pred CEEEEECCCCHH-HHHHHHHHHCCCC-E----E---E--EEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCC
Q ss_conf 728998898136-8999999957998-6----9---9--99657881289883076205446887568526974883789
Q gi|254781048|r 4 NKIALIGSGMIG-GTLAHLAVLKKLG-D----V---V--LLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEA 72 (320)
Q Consensus 4 ~KV~IIGaG~VG-~~~a~~~~~~~l~-e----i---~--L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~a 72 (320)
-||.++|...|| +++......+... + + + .+.++... ..+++.|++.-..+ ..-...-.+++
T Consensus 2 vKvv~lGd~~VGKTsli~r~~~~~f~~~y~pti~~~~~~~~~~~~~~---v~l~iwDTaG~e~~-----~~l~~~~~~~~ 73 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP---YTLGLFDTAGQEDY-----DRLRPLSYPQT 73 (175)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCEE---EEEEEEECCCCCCC-----HHHHHHHHHCC
T ss_conf 79999899995889999999649899986786347899999999999---99999989997451-----24658877138
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHH
Q ss_conf 789995566667655746789988999999997654126674088714842078
Q gi|254781048|r 73 DVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAM 126 (320)
Q Consensus 73 DivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~ 126 (320)
|.+++.-..-. |..+. |++ ....+.+..++|+.-+++|.|-+|.-
T Consensus 74 ~~~ilvydv~d-----~~Sf~--~i~--~~w~~~i~~~~~~~p~iLVGnK~DL~ 118 (175)
T cd01874 74 DVFLVCFSVVS-----PSSFE--NVK--EKWVPEITHHCPKTPFLLVGTQIDLR 118 (175)
T ss_pred CEEEEEEECCC-----HHHHH--HHH--HHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 88899963798-----78899--999--99999999829899889999872033
No 446
>PRK12831 putative oxidoreductase; Provisional
Probab=89.79 E-value=0.72 Score=25.73 Aligned_cols=79 Identities=24% Similarity=0.278 Sum_probs=44.0
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEE------------CCCCCH-HHHHH--HHHHHCCCCC----CCCEEEE
Q ss_conf 987289988981368999999957998699996------------578812-89883--0762054468----8756852
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLD------------IVDGMP-RGKAL--DIAESSPVEG----FGAQLCG 62 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D------------~~~~~~-~g~~~--Dl~~~~~~~~----~~~~v~~ 62 (320)
+.+||+|||+|--|-++|+-|+..+. ++.+|| |-+-++ +-..+ +++... ..+ .+..+-.
T Consensus 139 ~gkkVAVIGsGPAGLsaA~~La~~G~-~VtVfE~~~~~GG~l~yGIP~~RLpk~~vl~~ei~~l~-~~GV~~~~n~~vG~ 216 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKKGY-DVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIK-KLGVKIETNVIVGR 216 (464)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-CEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHH-HCCCEEEECCCCCC
T ss_conf 99989998976899999999997699-17998278888980445168887667899999999998-52938991574278
Q ss_pred CCCHHHH-C--CCCEEEEECCCC
Q ss_conf 6974883-7--897899955666
Q gi|254781048|r 63 TSDYSDI-A--EADVCIVTAGIP 82 (320)
Q Consensus 63 ~~d~~~l-~--~aDivVitag~~ 82 (320)
.-+.++| + +-|-|+++.|.+
T Consensus 217 dis~~~L~~~~~yDAV~la~Ga~ 239 (464)
T PRK12831 217 TVTIDELLEEEGFDAVFIGSGAG 239 (464)
T ss_pred CCCHHHHHHCCCCCEEEEECCCC
T ss_conf 76799996356998899944888
No 447
>KOG0409 consensus
Probab=89.73 E-value=1.2 Score=24.24 Aligned_cols=67 Identities=24% Similarity=0.359 Sum_probs=44.4
Q ss_pred CCEEEEECCCCHHHHHHH-HHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCC
Q ss_conf 872899889813689999-9995799869999657881289883076205446887568526974883789789995566
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAH-LAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGI 81 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~-~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~ 81 (320)
..+|+.||.|+.|++.+. ++..+. .+..||++.++++. |.+. ...+. ....+-.++||+++...+.
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~--kVtV~dr~~~k~~~----f~~~------Ga~v~-~sPaeVae~sDvvitmv~~ 101 (327)
T KOG0409 35 KTRIGFIGLGNMGSAMVSNLIKAGY--KVTVYDRTKDKCKE----FQEA------GARVA-NSPAEVAEDSDVVITMVPN 101 (327)
T ss_pred CCEEEEEEECCCHHHHHHHHHHCCC--EEEEEECCHHHHHH----HHHH------CHHHH-CCHHHHHHHCCEEEEECCC
T ss_conf 5513577434111899999997598--79999586788789----9970------50140-7979998636889997688
Q ss_pred C
Q ss_conf 6
Q gi|254781048|r 82 P 82 (320)
Q Consensus 82 ~ 82 (320)
|
T Consensus 102 ~ 102 (327)
T KOG0409 102 P 102 (327)
T ss_pred H
T ss_conf 0
No 448
>pfam01113 DapB_N Dihydrodipicolinate reductase, N-terminus. Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH.
Probab=89.72 E-value=1.7 Score=23.33 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=25.5
Q ss_pred EEEEECC-CCHHHHHHHHHHHCCCCE-EEEEECCCCC
Q ss_conf 2899889-813689999999579986-9999657881
Q gi|254781048|r 5 KIALIGS-GMIGGTLAHLAVLKKLGD-VVLLDIVDGM 39 (320)
Q Consensus 5 KV~IIGa-G~VG~~~a~~~~~~~l~e-i~L~D~~~~~ 39 (320)
||+|.|+ |+.|+.++..+....-.+ ...+|+....
T Consensus 2 kV~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~ 38 (122)
T pfam01113 2 KVAVVGASGRMGRELIKAILEAPDFELVAAVDRPGSS 38 (122)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 8999889887899999999858996899999438961
No 449
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=89.70 E-value=1.7 Score=23.32 Aligned_cols=35 Identities=20% Similarity=0.162 Sum_probs=25.6
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 99872899889813689999999579986999965
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDI 35 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~ 35 (320)
++..+|+|-|.|+||+.+|..+...+..=+.+-|.
T Consensus 21 l~g~~vaVqGfGnVG~~~a~~l~~~GakvvavsD~ 55 (217)
T cd05211 21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDP 55 (217)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 57999999898899999999999859989999857
No 450
>PRK08774 consensus
Probab=89.70 E-value=0.47 Score=26.92 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=28.9
Q ss_pred CCCC-EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 9987-289988981368999999957998699996578
Q gi|254781048|r 1 MKSN-KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 1 mk~~-KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
|+.+ -|.|+|+|-||.++|..+...++ .+.++|..+
T Consensus 1 M~~~~DVlIVGgGpvGl~lA~~La~~G~-~v~liE~~~ 37 (402)
T PRK08774 1 MTHPHDVLIVGGGLVGSSLAIALDRIGL-DVGLVEATP 37 (402)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHCCCC-CEEEEECCC
T ss_conf 9899878999916999999999966899-789993799
No 451
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=89.58 E-value=0.52 Score=26.63 Aligned_cols=33 Identities=15% Similarity=0.265 Sum_probs=26.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 7289988981368999999957998699996578
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
..|.|||+|-||.++|..+..+++ .+.|+|...
T Consensus 2 ~DV~IvGaG~vGl~lAl~La~~g~-~v~lie~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGI-KTTIFESKS 34 (374)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCC
T ss_conf 629999966999999999985799-699997899
No 452
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=89.47 E-value=0.54 Score=26.53 Aligned_cols=37 Identities=22% Similarity=0.531 Sum_probs=32.6
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 9987289988981368999999957998699996578
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
|+..||-++|+|.+|+..+..++..++.++.++|.+.
T Consensus 28 l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~ 64 (254)
T COG0476 28 LKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDT 64 (254)
T ss_pred HHHCEEEEECCCCCCCHHHHHHHHCCCCEEEEEECCE
T ss_conf 7648289977763351999999982698599985885
No 453
>TIGR01921 DAP-DH diaminopimelate dehydrogenase; InterPro: IPR010190 This entry represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine biosynthesis in Corynebacterium, Bacterioides, Porphyromonas and other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterised ..
Probab=89.41 E-value=1 Score=24.67 Aligned_cols=113 Identities=16% Similarity=0.187 Sum_probs=66.6
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEE-EEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEEC
Q ss_conf 9987289988981368999999957998699-996578812898830762054468875685269748837897899955
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVV-LLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTA 79 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~-L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVita 79 (320)
|++-+++|+|=||+|..+-.++.+++==||+ .+-+.+....-.+.|+ + .. ....+...+.|.|+.+++.
T Consensus 1 M~kiRaaIVGYGNlG~~V~~ai~~~PDmElvgv~~Rrd~~t~~va~~~---~------vy-~V~~~~K~~~dvdv~iLC~ 70 (326)
T TIGR01921 1 MSKIRAAIVGYGNLGKSVEEAIQQAPDMELVGVFRRRDAETLDVAEEL---A------VY-AVVEDEKELEDVDVLILCT 70 (326)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHCC---C------HH-HHHHHHHCCCCEEEEEECC
T ss_conf 970578886223200799999840898048998870788757611225---2------02-2222232028825999738
Q ss_pred CCCCCCCC---------CHHHHHHHHHHH--HHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCH
Q ss_conf 66667655---------746789988999--999997654126674088714842078999988449986
Q gi|254781048|r 80 GIPRKPSM---------SRDDLLADNLKA--IEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSGLPS 138 (320)
Q Consensus 80 g~~~~~g~---------~R~dll~~N~~i--~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg~~~ 138 (320)
|.....-+ .-.|-+....+| +++....-++. .+-|=||| .||+|
T Consensus 71 gsatd~pe~~p~fA~~~nTvDsfD~H~~Ip~~r~~~DaaA~~--~g~VSvis-------------~GWDP 125 (326)
T TIGR01921 71 GSATDLPEQKPYFAAFINTVDSFDIHTDIPDLRRTLDAAAKE--AGAVSVIS-------------AGWDP 125 (326)
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH--CCCEEEEE-------------ECCCC
T ss_conf 864555434510012210123650224207899999999986--19878998-------------34788
No 454
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=89.34 E-value=1.6 Score=23.46 Aligned_cols=75 Identities=16% Similarity=0.145 Sum_probs=45.4
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHH-HHHHHHHHHCCCCCCCCEEEECCCHHHH-C-CCCEEEEECCC
Q ss_conf 2899889813689999999579986999965788128-9883076205446887568526974883-7-89789995566
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPR-GKALDIAESSPVEGFGAQLCGTSDYSDI-A-EADVCIVTAGI 81 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~-g~~~Dl~~~~~~~~~~~~v~~~~d~~~l-~-~aDivVitag~ 81 (320)
-|+|+|.|.||-+....+..-+-..|+-+|++++|.+ +..+-.-|+. .+....-. ..-..++ . ++|.++.+.|.
T Consensus 188 tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~v--n~~~~~~v-v~~i~~~T~gG~d~~~e~~G~ 264 (366)
T COG1062 188 TVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFV--NPKEVDDV-VEAIVELTDGGADYAFECVGN 264 (366)
T ss_pred EEEEEECCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEE--CCCCHHHH-HHHHHHHCCCCCCEEEECCCC
T ss_conf 489990427669999989874885499993777899999863982465--54002548-999998627887789992599
Q ss_pred C
Q ss_conf 6
Q gi|254781048|r 82 P 82 (320)
Q Consensus 82 ~ 82 (320)
.
T Consensus 265 ~ 265 (366)
T COG1062 265 V 265 (366)
T ss_pred H
T ss_conf 8
No 455
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=89.32 E-value=1.2 Score=24.36 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=55.1
Q ss_pred CEEEEECCCCHHHH-HHHHHHHCCCC--------EEE--EEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCC
Q ss_conf 72899889813689-99999957998--------699--99657881289883076205446887568526974883789
Q gi|254781048|r 4 NKIALIGSGMIGGT-LAHLAVLKKLG--------DVV--LLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEA 72 (320)
Q Consensus 4 ~KV~IIGaG~VG~~-~a~~~~~~~l~--------ei~--L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~a 72 (320)
-||.++|.+.||.+ +......+... |.. .+.++... ..++|.|++-...+.. + ...-.+++
T Consensus 1 yKIvvlGdsgVGKTSLi~Rf~~~~F~~~y~pTi~d~~~k~i~i~g~~---v~L~IwDTaGqe~f~s-l----~~~y~~~a 72 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEV---YQLDILDTSGNHPFPA-M----RRLSILTG 72 (247)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCHHHEEEEEEEECCEE---EEEEEEECCCCCCCCC-C----HHHHHHCC
T ss_conf 97999998997899999999649689987888353188999999999---9999996766536874-4----20131217
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH------HHHHCCCCCCEEEECCCCHH
Q ss_conf 789995566667655746789988999999997------65412667408871484207
Q gi|254781048|r 73 DVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGA------GIRKYAPNSFVICITNPLDA 125 (320)
Q Consensus 73 DivVitag~~~~~g~~R~dll~~N~~i~~~i~~------~i~~~~p~~i~ivvtNPvDv 125 (320)
|.+++.-..-.+ +-++.=-.+++++-+ .=.+..|+..+++|.|=+|.
T Consensus 73 ~~~IlVYDITnr------~SFe~v~~w~~~I~e~k~~~~~~~~~~~~vpiiLVGNK~DL 125 (247)
T cd04143 73 DVFILVFSLDNR------ESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADR 125 (247)
T ss_pred CEEEEEEECCCH------HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf 789999979987------89998999999999864001001357888758998665543
No 456
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=89.30 E-value=0.61 Score=26.19 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=26.9
Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 89988981368999999957998699996578
Q gi|254781048|r 6 IALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 6 V~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
|.|||+|-+|.+.||-++..++. ++++|...
T Consensus 3 v~VIGaGi~Gls~A~~La~~G~~-V~vle~~~ 33 (365)
T TIGR03364 3 LIIVGAGILGLAHAYAAARRGLS-VTVIERSS 33 (365)
T ss_pred EEEECCHHHHHHHHHHHHHCCCC-EEEECCCC
T ss_conf 99999329999999999978994-99998999
No 457
>PRK08263 short chain dehydrogenase; Provisional
Probab=89.28 E-value=1.8 Score=23.12 Aligned_cols=114 Identities=14% Similarity=0.108 Sum_probs=65.3
Q ss_pred CCCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-----------HH
Q ss_conf 99872899889-8136899999995799869999657881289883076205446887568526974-----------88
Q gi|254781048|r 1 MKSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-----------SD 68 (320)
Q Consensus 1 mk~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-----------~~ 68 (320)
|+.+-+-|.|+ ..+|..+|..++..+ +.+++.+++.++++..+..+.+.. ...... .+|. +.
T Consensus 1 m~gKv~lITGassGIG~a~A~~la~~G-~~Vv~~~R~~~~l~~l~~~~~~~~--~~~~~D---vtd~~~v~~~v~~~~~~ 74 (275)
T PRK08263 1 MMGKVWFITGASRGFGREWTEAALERG-DRVVATARDTATLADLAERYGDAL--LPLALD---VTDRAAVFAAVEQAVKH 74 (275)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCCE--EEEEEE---CCCHHHHHHHHHHHHHH
T ss_conf 989989994674399999999999879-989999798999999999759967--999964---89999999999999998
Q ss_pred HCCCCEEEEECCCCCC-CC--CCHH---HHHHHHH----HHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 3789789995566667-65--5746---7899889----999999976541266740887148
Q gi|254781048|r 69 IAEADVCIVTAGIPRK-PS--MSRD---DLLADNL----KAIEKVGAGIRKYAPNSFVICITN 121 (320)
Q Consensus 69 l~~aDivVitag~~~~-~g--~~R~---dll~~N~----~i~~~i~~~i~~~~p~~i~ivvtN 121 (320)
+..-|++|..||.... +- .+.. ..++.|. ...+...+.+++.. .|.++++|-
T Consensus 75 ~G~iDiLVNNAG~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~a~lp~m~~~~-~G~IvnisS 136 (275)
T PRK08263 75 FGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNVFGALWVTQAVLPYLRAQR-SGHIIQISS 136 (275)
T ss_pred HCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC-CCEEEEECC
T ss_conf 49987899888667888747699999999999861999998764261335169-977999457
No 458
>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1; InterPro: IPR004384 These proteins are part of the trmH (spoU) family of rRNA methylases. The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases . TrmH is a tRNA (guanosine-2'-O-)-methyltransferase (2.1.1.34 from EC), which specifically methylates guanosine-18 in various tRNAs using S-adenosyl-L-methionine.; GO: 0008173 RNA methyltransferase activity.
Probab=89.27 E-value=0.85 Score=25.25 Aligned_cols=75 Identities=20% Similarity=0.258 Sum_probs=46.1
Q ss_pred EEEEE---CCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHC--CCCEEEEE
Q ss_conf 28998---898136899999995799869999657881289883076205446887568526974-8837--89789995
Q gi|254781048|r 5 KIALI---GSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIA--EADVCIVT 78 (320)
Q Consensus 5 KV~II---GaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~--~aDivVit 78 (320)
.|..| ..||||+. |=.++.-|+.+|+|++....-..-++.=+.+.+.-.-.+-+++ .|+ +.+. |+|+||=|
T Consensus 6 ~ivLVep~~~gNvG~~-ARaMKnmGl~~L~Lv~p~~~~~~~eay~~A~~A~Di~~nA~vv--~~L~Eal~sld~~~~vgT 82 (253)
T TIGR00050 6 SIVLVEPKHSGNVGSI-ARAMKNMGLEELILVNPRVDILEEEAYALAAHAKDILENAKVV--DDLDEALDSLDCDLVVGT 82 (253)
T ss_pred EEEEEECCCCCCHHHH-HHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCEEE--CCHHHHHHHCCCCEEEEC
T ss_conf 7888617998644699-9998762700125646622556878999872027865875474--267999873199707862
Q ss_pred CCCC
Q ss_conf 5666
Q gi|254781048|r 79 AGIP 82 (320)
Q Consensus 79 ag~~ 82 (320)
.|+|
T Consensus 83 sGaR 86 (253)
T TIGR00050 83 SGAR 86 (253)
T ss_pred CCCC
T ss_conf 6788
No 459
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=89.26 E-value=1.8 Score=23.12 Aligned_cols=116 Identities=17% Similarity=0.140 Sum_probs=66.3
Q ss_pred CEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCC-CCCCCCEEEECCC--------HHHHCCC
Q ss_conf 728998-89-81368999999957998699996578812898830762054-4688756852697--------4883789
Q gi|254781048|r 4 NKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSP-VEGFGAQLCGTSD--------YSDIAEA 72 (320)
Q Consensus 4 ~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~-~~~~~~~v~~~~d--------~~~l~~a 72 (320)
.|+++| |+ +.+|..+|..++..+. ++++.|++++.++..+.+++..-. .......+....+ .+.+-.-
T Consensus 12 gKvalVTG~s~GIG~aia~~la~~Ga-~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~i 90 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWLAADVADEADIERLAEETLERFGHI 90 (259)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99899948776899999999998699-99999798899999999999549958999826899999999999999983999
Q ss_pred CEEEEECCCCC-CCCC--CH---HHHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 78999556666-7655--74---678998899----9999997654126674088714
Q gi|254781048|r 73 DVCIVTAGIPR-KPSM--SR---DDLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 73 DivVitag~~~-~~g~--~R---~dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
|++|-.||... .|-. +. ...+..|.. ..+...+...+..-.|-+++++
T Consensus 91 DiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~f~~~~~~~~~~m~~~~~G~IVnis 148 (259)
T PRK08213 91 DILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGTFLLSQAVAKRSMIPRGYGRIINVA 148 (259)
T ss_pred CEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 8999899778898645699999999998844119999999999999857994599993
No 460
>PRK07904 short chain dehydrogenase; Provisional
Probab=89.24 E-value=1.8 Score=23.11 Aligned_cols=114 Identities=17% Similarity=0.221 Sum_probs=61.9
Q ss_pred CCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCC-CHHHHHHHHHHHCCCCCCCCEEEE--CCCHHHH---------
Q ss_conf 872899889-813689999999579986999965788-128988307620544688756852--6974883---------
Q gi|254781048|r 3 SNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDG-MPRGKALDIAESSPVEGFGAQLCG--TSDYSDI--------- 69 (320)
Q Consensus 3 ~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~-~~~g~~~Dl~~~~~~~~~~~~v~~--~~d~~~l--------- 69 (320)
++.|-|.|+ ..+|.++|..++.++-..++|.++.++ +.+..+.+++..- .....+.. ..|.+..
T Consensus 8 ~KtvlITGassGIG~a~a~~~~~~g~~~v~l~~r~~~~~~~~~~~~~~~~~---~~~v~~~~~D~~d~~~~~~~i~~~~~ 84 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLRNAPARVVLAALPDDPRRDAAVAQMKAAG---ASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCC---CCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 998999356509999999999974989899997897326999999998549---97189995566798999999999985
Q ss_pred -CCCCEEEEECCCCCCCCC---CHH---HHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf -789789995566667655---746---78998899----9999997654126674088714
Q gi|254781048|r 70 -AEADVCIVTAGIPRKPSM---SRD---DLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 70 -~~aDivVitag~~~~~g~---~R~---dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
.+-|+++..+|....... +.. ..++.|.- +.+.+.+.+.+.+ .|.++++|
T Consensus 85 ~~~idv~i~~aG~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~m~~~~-~G~Iv~is 145 (253)
T PRK07904 85 GGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQG-FGQIIAMS 145 (253)
T ss_pred CCCEEEEEECCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEC
T ss_conf 49935999624456782554022999999998994999999999999997549-98699966
No 461
>KOG1429 consensus
Probab=89.06 E-value=0.77 Score=25.55 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=33.1
Q ss_pred CCCEEEEEC-CCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 987289988-9813689999999579986999965788128988307620544
Q gi|254781048|r 2 KSNKIALIG-SGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPV 53 (320)
Q Consensus 2 k~~KV~IIG-aG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~ 53 (320)
++-||.|+| +|.||++++--++..+ .+++-.|-. -.|....++|+..+
T Consensus 26 ~~lrI~itGgaGFIgSHLvdkLm~eg-h~Via~Dn~---ftg~k~n~~~~~~~ 74 (350)
T KOG1429 26 QNLRILITGGAGFIGSHLVDKLMTEG-HEVIALDNY---FTGRKENLEHWIGH 74 (350)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECC---CCCCHHHCCCCCCC
T ss_conf 87079996574058899999997468-779998313---45521002100367
No 462
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=89.02 E-value=0.91 Score=25.06 Aligned_cols=76 Identities=18% Similarity=0.137 Sum_probs=40.2
Q ss_pred CCCEEEEECCCC-HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEEEC
Q ss_conf 987289988981-36899999995799869999657881289883076205446887568526974-8837897899955
Q gi|254781048|r 2 KSNKIALIGSGM-IGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIVTA 79 (320)
Q Consensus 2 k~~KV~IIGaG~-VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVita 79 (320)
+.+++.|||.++ ||..+|.+++.++.. +.-+|++--.+.-.-.++.+... .. .....+. +.++.|||+|.+.
T Consensus 61 ~Gk~vvVIGRS~iVGkPla~LL~~~~AT-Vt~~d~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~aDIvI~av 134 (197)
T cd01079 61 YGKTITIINRSEVVGRPLAALLANDGAR-VYSVDINGIQVFTRGESIRHEKH----HV-TDEEAMTLDCLSQSDVVITGV 134 (197)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHCCCE-EEEECCCCEEEEECCCCCCCEEE----EE-CCCCHHHHHHCCCCCEEEECC
T ss_conf 9998999898731548899999738996-77503442146404665221245----64-142100565423479999887
Q ss_pred CCCC
Q ss_conf 6666
Q gi|254781048|r 80 GIPR 83 (320)
Q Consensus 80 g~~~ 83 (320)
|.|.
T Consensus 135 g~p~ 138 (197)
T cd01079 135 PSPN 138 (197)
T ss_pred CCCC
T ss_conf 8776
No 463
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=89.00 E-value=0.28 Score=28.35 Aligned_cols=109 Identities=19% Similarity=0.270 Sum_probs=56.4
Q ss_pred CEEEEECCCCHHHH-HHHHHHHCCCC-E--EEEEECCCC--CHHH--HHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEE
Q ss_conf 72899889813689-99999957998-6--999965788--1289--883076205446887568526974883789789
Q gi|254781048|r 4 NKIALIGSGMIGGT-LAHLAVLKKLG-D--VVLLDIVDG--MPRG--KALDIAESSPVEGFGAQLCGTSDYSDIAEADVC 75 (320)
Q Consensus 4 ~KV~IIGaG~VG~~-~a~~~~~~~l~-e--i~L~D~~~~--~~~g--~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDiv 75 (320)
-||.++|.+.||.+ +......+... + -.+.|.... ...+ ..+.+.|++-... ...-...-.+++|.+
T Consensus 2 iKivlvGd~~VGKTsli~r~~~~~f~~~~~~Ti~~~~~~~i~~~~~~v~l~iwDtaGqe~-----~~~~~~~~~~~a~~~ 76 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED-----YDRLRPLSYPQTDVF 76 (174)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCEEEEEEEECCCCCCC-----CHHHHHHHHHHCCEE
T ss_conf 699998999986999999997399999868837887679999999999999986999724-----067889987406689
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHH
Q ss_conf 995566667655746789988999999997654126674088714842078
Q gi|254781048|r 76 IVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAM 126 (320)
Q Consensus 76 Vitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~ 126 (320)
|+.-....+ .. +. |.+ ....+.+.+++|+..+++|.|-+|..
T Consensus 77 ilvydi~~~-----~S-F~-~i~--~~w~~~i~~~~~~~piiLVGnK~DL~ 118 (174)
T cd01871 77 LICFSLVSP-----AS-FE-NVR--AKWYPEVRHHCPNTPIILVGTKLDLR 118 (174)
T ss_pred EEEEECCCH-----HH-HH-HHH--HHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 999867987-----88-99-999--99999999858899979874730131
No 464
>PRK07538 hypothetical protein; Provisional
Probab=88.99 E-value=0.74 Score=25.66 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=27.6
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 2899889813689999999579986999965788
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDG 38 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~ 38 (320)
||.|||+|-.|-++|.+|...++ ++.+++..++
T Consensus 2 ~V~IvGaG~aGL~lA~~L~~~Gi-~v~V~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGI-EVEVFEAAPE 34 (413)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-CEEEECCCCC
T ss_conf 89999905899999999997899-9899936998
No 465
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=88.88 E-value=0.98 Score=24.87 Aligned_cols=36 Identities=28% Similarity=0.308 Sum_probs=28.6
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 9987289988981368999999957998699996578
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
|++.-|.|||+|--|.+.|..+...+. .+.+++.++
T Consensus 1 M~~YDviIIGaGpaG~~AA~~aa~~G~-kV~liE~~~ 36 (438)
T PRK07251 1 MLTYDLIVIGFGKAGKTLAAKLASAGK-KVALVERSK 36 (438)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC-EEEEEECCC
T ss_conf 995587999978899999999997889-499994699
No 466
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=88.82 E-value=2 Score=22.92 Aligned_cols=130 Identities=16% Similarity=0.104 Sum_probs=64.3
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCC
Q ss_conf 98728998898136899999995799869999657881289883076205446887568526974883789789995566
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGI 81 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~ 81 (320)
++-||.|||.|.|+.-=+.+++-.+ +.+.++.. + ...+-.+|... +.-.-+...=+++++.|+++||.+..-
T Consensus 23 ~klkvLVVGGG~VA~RKi~~Ll~ag-A~VtVVSP--~-~~~el~~L~~~----~~I~~i~r~y~~~dL~~~~LVIaATdd 94 (222)
T PRK05562 23 NKIKVLVIGGGKAAFIKGKTFLKKG-CYVEILSK--E-FSKEFLDLKKY----GNLKLIKGNYDKEFIKDKHLIIIATDD 94 (222)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEECC--C-CCHHHHHHHHC----CCEEEEECCCCHHHCCCCCEEEEECCC
T ss_conf 6766999998799999999998789-98999878--6-68899999975----986999686797780887399994798
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-CEEEECCCCHHHHHH--HHHHCCCCHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 667655746789988999999997654126674-088714842078999--98844998656110005256899999999
Q gi|254781048|r 82 PRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNS-FVICITNPLDAMVWA--LQKFSGLPSHMVVGMAGILDSARFRYFLA 158 (320)
Q Consensus 82 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~-i~ivvtNPvDv~~~~--~~~~sg~~~~rViG~Gt~LDs~R~~~~ia 158 (320)
+ +.|.+|.++ ..+ .+ ++.++++|-.-...+ .-+-. .=+|+.-|.=-|--+-+.|.
T Consensus 95 ~-----------~lN~~I~~~----a~~---~~ilvNvvddp~~~~fi~Paiv~Rg----~L~IAIST~G~SP~lAr~iR 152 (222)
T PRK05562 95 E-----------ELNNKIRKH----CDR---LYKLYIDCSDFKKGLCVIPYQRSSK----NMVFALNTKGGSPKTSVFIG 152 (222)
T ss_pred H-----------HHHHHHHHH----HHH---HCCEEEECCCCCCCCEEECEEEEEC----CEEEEEECCCCCHHHHHHHH
T ss_conf 8-----------999999999----998---0998898578876817977099728----97999989998979999999
Q ss_pred HHC
Q ss_conf 971
Q gi|254781048|r 159 QEF 161 (320)
Q Consensus 159 ~~l 161 (320)
+++
T Consensus 153 ~kl 155 (222)
T PRK05562 153 EKV 155 (222)
T ss_pred HHH
T ss_conf 999
No 467
>PRK00811 spermidine synthase; Provisional
Probab=88.79 E-value=2 Score=22.91 Aligned_cols=108 Identities=19% Similarity=0.289 Sum_probs=60.3
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH---HHHHHCCCCCCCCEEEECCC-HH---HH-CCCC
Q ss_conf 98728998898136899999995799869999657881289883---07620544688756852697-48---83-7897
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKAL---DIAESSPVEGFGAQLCGTSD-YS---DI-AEAD 73 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~---Dl~~~~~~~~~~~~v~~~~d-~~---~l-~~aD 73 (320)
.+++|-|||.|. |+++--++....+.++.++|+++...+--.. +++..+ +.+-..++.. +| +. +. ..=|
T Consensus 78 ~pk~VLIiGGGD-Gg~~rE~lkh~~v~~v~~VeiD~~Vi~~~~~~lp~~~~~~-~~dprv~~~~-~Dg~~fv~~~~~~yD 154 (283)
T PRK00811 78 NPKKVLIIGGGD-GGTLREVLKHPSVEKITMVEIDERVVEMSRKYLPEISGGA-WDDPRVELVI-GDGVKFVRETENSFD 154 (283)
T ss_pred CCCEEEEECCCC-HHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHH-CCCCCEEEEH-HHHHHHHHHCCCCCC
T ss_conf 977489956874-7999998427885679999468999999999838863133-0297159982-789999984523554
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 89995566667655746789988999999997654126674088714
Q gi|254781048|r 74 VCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 74 ivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
+||+-.--|..|+. .|+ +.+.++.+-+.+ .|+|+++.=+
T Consensus 155 vII~D~tDP~gpa~---~Lf--t~~Fy~~~~~~L---~~~Gi~v~Q~ 193 (283)
T PRK00811 155 VIIVDSTDPVGPAE---GLF--TKEFYENCKRAL---KEGGIFVAQS 193 (283)
T ss_pred EEEEECCCCCCHHH---HHC--CHHHHHHHHHHC---CCCCEEEECC
T ss_conf 89980899886445---534--599999999853---9995899927
No 468
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=88.78 E-value=2 Score=22.90 Aligned_cols=118 Identities=14% Similarity=0.200 Sum_probs=64.6
Q ss_pred CCCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHC--CCCCCCCEEEECCCH--------HHH
Q ss_conf 99872899889-8136899999995799869999657881289883076205--446887568526974--------883
Q gi|254781048|r 1 MKSNKIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESS--PVEGFGAQLCGTSDY--------SDI 69 (320)
Q Consensus 1 mk~~KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~--~~~~~~~~v~~~~d~--------~~l 69 (320)
+|.+.+-|.|+ +.+|.++|..++..+ +.+++.|++.++..-...++.... ........+....+. +..
T Consensus 3 L~gK~~lITGgs~GIG~aia~~la~~G-~~Vii~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlt~~~~v~~~~~~~~~~~ 81 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQG-ANVVLNYASSEAGAEALVAEIGALGGKALAVQGDVADAESIERAVDEAKAEF 81 (248)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 799889994897689999999999879-9899996985658999999999639958999903899999999999999982
Q ss_pred CCCCEEEEECCCCCCCCC---CHH---HHHHHH----HHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 789789995566667655---746---789988----999999997654126674088714
Q gi|254781048|r 70 AEADVCIVTAGIPRKPSM---SRD---DLLADN----LKAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 70 ~~aDivVitag~~~~~g~---~R~---dll~~N----~~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
..-|++|..||....... +.. ..+..| ..+.+.+.+.+.+. ..|-++.++
T Consensus 82 g~iD~linnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~-~~G~IVnis 141 (248)
T PRK05557 82 GGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQ-RSGRIINIS 141 (248)
T ss_pred CCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEC
T ss_conf 997199989977999991559999999999878304999999999999970-697189980
No 469
>pfam00208 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase.
Probab=88.74 E-value=0.66 Score=25.97 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=21.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 98728998898136899999995799
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKL 27 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l 27 (320)
+.++|+|-|.|+||+.+|..+...+.
T Consensus 31 ~g~~v~IqGfGnVG~~~a~~l~~~Ga 56 (237)
T pfam00208 31 EGKTVAVQGFGNVGSYAAEKLLELGA 56 (237)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC
T ss_conf 89999998988999999999998799
No 470
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.72 E-value=2 Score=22.87 Aligned_cols=124 Identities=18% Similarity=0.234 Sum_probs=66.9
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEE-EECCCHHHHCCCCEEEEECCC
Q ss_conf 8728998898136899999995799869999657881289883076205446887568-526974883789789995566
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQL-CGTSDYSDIAEADVCIVTAGI 81 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v-~~~~d~~~l~~aDivVitag~ 81 (320)
..+.-|+|.|.-|.++|..+..++. ++..+|..+.......+..+. ....+ .+..+.+.+.++|.||++.|.
T Consensus 7 ~~~~LV~G~G~sG~s~a~~L~~~G~-~V~~~D~~~~~~~~~~~~~~~------~~i~~~~g~~~~~~~~~~d~vv~SPgI 79 (448)
T PRK03803 7 DGLRIVVGLGKSGMSLVRFLARQGY-QFAVTDTRENPPELATLRRDY------PQVEVRCGELDAEFLCQAEEIIVSPGL 79 (448)
T ss_pred CCCEEEEEECHHHHHHHHHHHHCCC-EEEEEECCCCCHHHHHHHHHC------CCCEEEECCCCHHHHCCCCEEEECCCC
T ss_conf 9958999989999999999997889-599991899916799999747------997799788897780789999989972
Q ss_pred CCCCCCCHHH-HHHHHHHHHHHHHHHHHHCCCCCCEEEE--CCCCHH---HHHHHHHHCCCC
Q ss_conf 6676557467-8998899999999765412667408871--484207---899998844998
Q gi|254781048|r 82 PRKPSMSRDD-LLADNLKAIEKVGAGIRKYAPNSFVICI--TNPLDA---MVWALQKFSGLP 137 (320)
Q Consensus 82 ~~~~g~~R~d-ll~~N~~i~~~i~~~i~~~~p~~i~ivv--tNPvDv---~~~~~~~~sg~~ 137 (320)
|..- .... ..+.+.+|+.++-- ..+.+. +.+|-| ||==-+ |...+.+..|+.
T Consensus 80 ~~~~--p~~~~a~~~~i~i~~e~el-~~~~~~-~~~IaVTGTnGKTTTtsli~~iL~~~g~~ 137 (448)
T PRK03803 80 ALAT--PALQAAAAAGIKISGDIEL-FARAAK-APIVAITGSNAKSTVTTLVGEMAKAAGKR 137 (448)
T ss_pred CCCC--HHHHHHHHCCCCEECHHHH-HHHHCC-CCEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9999--9999999859968319999-862178-98899858998388999999999865983
No 471
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=88.64 E-value=2 Score=22.84 Aligned_cols=118 Identities=16% Similarity=0.216 Sum_probs=64.0
Q ss_pred CCEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCC-CCCCCEEEECCCH--------HHHCC
Q ss_conf 8728998-89-813689999999579986999965788128988307620544-6887568526974--------88378
Q gi|254781048|r 3 SNKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPV-EGFGAQLCGTSDY--------SDIAE 71 (320)
Q Consensus 3 ~~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~-~~~~~~v~~~~d~--------~~l~~ 71 (320)
..||++| |+ +.+|..++..++..+..=.+.++++++.++..+.++++.-.. ......+....+. +.+-.
T Consensus 5 ~~KvalVTGa~~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~ 84 (252)
T PRK06947 5 DRKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQAAFGR 84 (252)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99089993883589999999999879989998089878999999999964992899984799999999999999998499
Q ss_pred CCEEEEECCC--CCCC--CCCHH---HHHHHHHH----HHHHHHHHHHHC--CCCCCEEEEC
Q ss_conf 9789995566--6676--55746---78998899----999999765412--6674088714
Q gi|254781048|r 72 ADVCIVTAGI--PRKP--SMSRD---DLLADNLK----AIEKVGAGIRKY--APNSFVICIT 120 (320)
Q Consensus 72 aDivVitag~--~~~~--g~~R~---dll~~N~~----i~~~i~~~i~~~--~p~~i~ivvt 120 (320)
-|++|..||. |..| .++.. ..+..|.. +.+...+.+.+. +..+.++.++
T Consensus 85 iD~lVnNAG~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Iinis 146 (252)
T PRK06947 85 LDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVS 146 (252)
T ss_pred CCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 88999876435799981239999999999998579999999999999984579985899985
No 472
>PRK10538 3-hydroxy acid dehydrogenase; Provisional
Probab=88.64 E-value=2 Score=22.84 Aligned_cols=111 Identities=12% Similarity=0.179 Sum_probs=65.7
Q ss_pred EEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH--------HHHCCCCEEE
Q ss_conf 899889-8136899999995799869999657881289883076205446887568526974--------8837897899
Q gi|254781048|r 6 IALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY--------SDIAEADVCI 76 (320)
Q Consensus 6 V~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~--------~~l~~aDivV 76 (320)
+-|.|+ +.+|.++|..++..+ +.+++.++++++++..+.++.+...+. ...+....+. +.+..-|++|
T Consensus 3 vlVTGassGIG~a~A~~la~~G-a~Vv~~~r~~~~l~~l~~~lg~~~~~~--~~Dvsd~~~v~~~~~~~~~~~g~iDiLV 79 (248)
T PRK10538 3 VLVTGATAGFGECITRRFIQNG-HKVIATGRRQERLQELKDELGDNLYIA--QLDVRNRAAIEEMLASLPAEWRNIDILV 79 (248)
T ss_pred EEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHCCCEEEE--EEECCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 9998886699999999999879-999999899999999999848867999--9734888999999999999709975999
Q ss_pred EECCCCC--CCCC--C---HHHHHHHHH----HHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 9556666--7655--7---467899889----99999997654126674088714
Q gi|254781048|r 77 VTAGIPR--KPSM--S---RDDLLADNL----KAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 77 itag~~~--~~g~--~---R~dll~~N~----~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
..||... .|-. + -...++.|. .+.+...+.+.+.. .|.+++++
T Consensus 80 nNAG~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnis 133 (248)
T PRK10538 80 NNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERN-HGHIINIG 133 (248)
T ss_pred ECCCCCCCCCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC-CCEEEEEE
T ss_conf 7785467888637689999987775241319999999867666359-95899993
No 473
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=88.63 E-value=0.95 Score=24.96 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=24.7
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 8728998898136899999995799869999657
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIV 36 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~ 36 (320)
.+||+|||||--|-+.+-.++..++ |.++++..
T Consensus 1 ~KrVAIIGAG~SGL~a~K~lle~G~-~~~~FE~~ 33 (532)
T pfam00743 1 AKKVAVIGAGVSGLSSIKCCLEEGL-EPTCFERS 33 (532)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
T ss_conf 9879998972999999999987799-82999779
No 474
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=88.63 E-value=2 Score=22.83 Aligned_cols=256 Identities=13% Similarity=0.092 Sum_probs=117.7
Q ss_pred EEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCCC
Q ss_conf 2899889-813689999999579986999965788128988307620544688756852697488378978999556666
Q gi|254781048|r 5 KIALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIPR 83 (320)
Q Consensus 5 KV~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~~ 83 (320)
||-|+|+ |++|.++...+...+ ++..++....... .|+.+... ..++-.-...|+||-+|+.-.
T Consensus 2 kILvtGa~GqLG~~l~~~l~~~~--~~~~~~~~~~~~~---~Dit~~~~----------v~~~~~~~~Pd~IIN~aA~T~ 66 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALDVHSTDYC---GDFSNPEG----------VAETVRKIRPDVIVNAAAHTA 66 (299)
T ss_pred EEEEECCCCHHHHHHHHHHHHCC--CEEEEECCCCCCC---CCCCCHHH----------HHHHHHHCCCCEEEECHHHCC
T ss_conf 79998999978999999866509--8899852630013---67899999----------999999659999998831016
Q ss_pred CC-CC-CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCC-------CC-HHHHHHHCCCHHHHHH
Q ss_conf 76-55-746789988999999997654126674088714842078999988449-------98-6561100052568999
Q gi|254781048|r 84 KP-SM-SRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDAMVWALQKFSG-------LP-SHMVVGMAGILDSARF 153 (320)
Q Consensus 84 ~~-g~-~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~~~~~~~sg-------~~-~~rViG~Gt~LDs~R~ 153 (320)
-. -+ ....-...|+.-.+.+++.+++.+ ..+|-+|- -|++--... .| |--+.|. |-|..-++
T Consensus 67 VD~~E~~~~~a~~vN~~~~~~La~~~~~~~--~~lIhiST-----D~VFdG~~~~pY~E~d~~~P~n~YG~-sKl~GE~~ 138 (299)
T PRK09987 67 VDKAESEPEFAQLLNATSVEAIAKAANEVG--AWVVHYST-----DYVFPGTGDIPWQETDATAPLNVYGE-TKLAGEKA 138 (299)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHCC--CEEEEECC-----CEEECCCCCCCCCCCCCCCCCHHHHH-HHHHHHHH
T ss_conf 366524899999988899999999999739--85999632-----11606899989999998896368989-99998999
Q ss_pred HHHHHHHCCCCCCCC---EEEEECCCCCEEEEECCCCCCCCCHHHHHHHC--CCCCHHHHHH----HHHHHHCC--HHHH
Q ss_conf 999999719873355---05675078852465102354477015543001--5878767999----98455101--5888
Q gi|254781048|r 154 RYFLAQEFGVSVESV---TALVLGSHGDSMVPMLRYATVSGIPVSDLVKL--GWTTQEKIDQ----IVKRTREG--GAEI 222 (320)
Q Consensus 154 ~~~ia~~l~v~~~~V---~~~ViGeHGds~vp~~S~~~v~g~p~~~~~~~--~~~~~~~~~~----l~~~v~~~--g~~i 222 (320)
+ +...+..+ ..|+.|++|++.+--+-+.--.+.++.-.-.+ ..+...++.+ +++..... -+-|
T Consensus 139 ---v---~~~~~~~~IlRtswl~~~~g~nFv~~il~~~~~~~~l~vv~Dq~gsPT~~~~la~~~~~~i~~~~~~~~~~Gi 212 (299)
T PRK09987 139 ---L---QDNCAKHLIFRTSWVYAGKGNNFAKTMLRLAKEREELSVINDQFGAPTGAELLADCTAHAIRVALNKPEVAGL 212 (299)
T ss_pred ---H---HHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCCCEEECCEECCCCCHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf ---9---9628740885147886478987999999998739987135574589746999999999999997358755671
Q ss_pred HHHHCCCCCC-CCCHHHHHHHHHHHH--CCCCEEEEEEEEECCCCCC--CCEEEEEEEEECCCCCEEEECCCCCHHHH
Q ss_conf 8751576543-220323234455452--8897499999997364475--63478876999787228884799988999
Q gi|254781048|r 223 VGLLRSGSAY-YAPASSAIAIAESYL--KNKKNLLPCAAHLSGQYGV--EGFYVGVPVVIGHKGVEKIVELNLSFDEK 295 (320)
Q Consensus 223 i~~~~kg~t~-~~~a~a~~~ii~aIl--~~~~~v~~~s~~~~g~yg~--~~v~~s~P~vig~~Gi~~i~~l~Ls~~E~ 295 (320)
+.+.+.|.++ |-.|..+++.....- .+...+.|++ ..+|.. .-...| +++.+-+++.+.+++.+|+.
T Consensus 213 yH~~~~g~~S~yefA~~I~~~a~~~~~~~~~~~i~~i~---s~~~~~~A~RP~~s---~Ld~~Ki~~~~gi~~p~W~~ 284 (299)
T PRK09987 213 YHLVAGGTTTWHDYAALVFEEARKAGITLALTKLNAVP---TSAYPTPARRPHNS---RLNTEKFQRNFALVLPDWQV 284 (299)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE---HHHCCCCCCCCCCC---CCCHHHHHHHHCCCCCCHHH
T ss_conf 56049988489999999999999739975657047866---65458889998734---26789999872999967899
No 475
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=88.55 E-value=0.79 Score=25.48 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=27.2
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 8728998898136899999995799869999657
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIV 36 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~ 36 (320)
+..|.|||+|-+|-++|.+|...++.- +++|+.
T Consensus 2 rt~V~IVGaGP~GL~LA~lLar~GI~~-vVlEr~ 34 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDS-VVLERR 34 (392)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCE-EEEECC
T ss_conf 988999997799999999999779988-999768
No 476
>KOG2012 consensus
Probab=88.52 E-value=2 Score=22.79 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=50.3
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECC-------------------CCCHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 998728998898136899999995799869999657-------------------8812898830762054468875685
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIV-------------------DGMPRGKALDIAESSPVEGFGAQLC 61 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~-------------------~~~~~g~~~Dl~~~~~~~~~~~~v~ 61 (320)
|+..+|-|.|.+.+|..+|--+.+.++.-+.|+|.. .+++++...-|..- +....+.
T Consensus 35 m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~DigknRA~as~~~LaeL----N~yV~V~ 110 (1013)
T KOG2012 35 MQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDIGKNRAEASVEKLAEL----NNYVPVV 110 (1013)
T ss_pred HHHCCEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCEEEEHHHCCCCHHHHHHHHHHHH----HCCEEEE
T ss_conf 751868876277532899866712045047850787653876224506338860876688899999986----2652269
Q ss_pred E-CCC--HHHHCCCCEEEEECC
Q ss_conf 2-697--488378978999556
Q gi|254781048|r 62 G-TSD--YSDIAEADVCIVTAG 80 (320)
Q Consensus 62 ~-~~d--~~~l~~aDivVitag 80 (320)
. ++. -+-+++-++||.|.-
T Consensus 111 v~t~~~~~e~L~~FqvVVlt~~ 132 (1013)
T KOG2012 111 VLTGPLTEEFLSDFQVVVLTDA 132 (1013)
T ss_pred EECCCCCHHHHHCCCEEEEECC
T ss_conf 7147661878737718999657
No 477
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit; InterPro: IPR014215 This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by IPR014214 from INTERPRO. This protein is also known as SpoVFA..
Probab=88.52 E-value=1.5 Score=23.59 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=12.9
Q ss_pred CCEEEEECCCCHHHHHHHHHH
Q ss_conf 872899889813689999999
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAV 23 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~ 23 (320)
..|+.|+|-|++|.++|..+.
T Consensus 152 gS~v~VlGfGRtG~tiAr~f~ 172 (288)
T TIGR02853 152 GSNVMVLGFGRTGMTIARTFS 172 (288)
T ss_pred CCEEEEECCCCHHHHHHHHHH
T ss_conf 134578844705689999997
No 478
>pfam08659 KR KR domain. This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=88.44 E-value=2.1 Score=22.76 Aligned_cols=77 Identities=23% Similarity=0.238 Sum_probs=44.5
Q ss_pred EEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEE--EECCCHHH-----------HCC
Q ss_conf 899889-8136899999995799869999657881289883076205446887568--52697488-----------378
Q gi|254781048|r 6 IALIGS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQL--CGTSDYSD-----------IAE 71 (320)
Q Consensus 6 V~IIGa-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v--~~~~d~~~-----------l~~ 71 (320)
+-|.|+ +.+|..++..++.++-..++|+++++...+.....++.... .+..... .-..|.++ ...
T Consensus 3 vlITGas~GIG~aia~~la~~Ga~~vvl~~r~~~~~~~~~~~~~~l~~-~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 81 (181)
T pfam08659 3 YLVTGGLGGLGLELARWLAERGARHLVLLSRSGAPDPEAEALLAELEA-RGAEVTVVACDVSDRDAVAALLAEIRADGPP 81 (181)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH-CCCEEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999687878999999999987997899986897662999999999996-5996999975689999999888657987398
Q ss_pred CCEEEEECCCCC
Q ss_conf 978999556666
Q gi|254781048|r 72 ADVCIVTAGIPR 83 (320)
Q Consensus 72 aDivVitag~~~ 83 (320)
-|++|..||...
T Consensus 82 id~lvnnAG~~~ 93 (181)
T pfam08659 82 LRGVIHAAGVLR 93 (181)
T ss_pred EEEEEEECCCCC
T ss_conf 489995446678
No 479
>PRK07588 hypothetical protein; Provisional
Probab=88.43 E-value=0.87 Score=25.19 Aligned_cols=34 Identities=32% Similarity=0.483 Sum_probs=27.8
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 28998898136899999995799869999657881
Q gi|254781048|r 5 KIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGM 39 (320)
Q Consensus 5 KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~ 39 (320)
||.|+|+|-.|-++|+.|...++ ++.++++.++.
T Consensus 2 kVlIvGaGiaGLalA~~L~r~G~-~v~V~Er~~~~ 35 (391)
T PRK07588 2 KIAISGAGIAGATLAHWLQRTGH-EPTLIERAPKL 35 (391)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCC
T ss_conf 79999932899999999986899-98999038988
No 480
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=88.40 E-value=1.1 Score=24.51 Aligned_cols=110 Identities=20% Similarity=0.285 Sum_probs=57.9
Q ss_pred CEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH-----HHHHHHCCCCCCCCEEEECCCHHHHCCCCEEE
Q ss_conf 728998-89-813689999999579986999965788128988-----30762054468875685269748837897899
Q gi|254781048|r 4 NKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKA-----LDIAESSPVEGFGAQLCGTSDYSDIAEADVCI 76 (320)
Q Consensus 4 ~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~-----~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivV 76 (320)
.|+++| |+ +.+|..+|..++..+ +++++.|++++..+... .|+.+.... +-....-.+.+-.-|++|
T Consensus 9 gKvalVTGgs~GIG~aia~~la~~G-a~V~~~d~~~~~~~~~~~~~~~~Dvt~~~~v-----~~~v~~~~~~~G~iDiLV 82 (266)
T PRK06171 9 GKIIIVTGGSSGIGLAIVEELLAQG-ANVQMVDIHGGDEKHKGYQFWPTDISSAKEV-----NHTVAEIIERFGRIDGLV 82 (266)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHCCCCCEEEEECCCCCHHHH-----HHHHHHHHHHHCCCCEEE
T ss_conf 9979994778789999999999879-9999997885350589769998169999999-----999999999839988999
Q ss_pred EECCCCC--------CC----CCC---HHHHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 9556666--------76----557---4678998899----9999997654126674088714
Q gi|254781048|r 77 VTAGIPR--------KP----SMS---RDDLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 77 itag~~~--------~~----g~~---R~dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
-.||... .| ..+ -...+..|.. ..+...+.+.+.. .|.+|+++
T Consensus 83 NNAGi~~~~~~~d~~~~~~~~e~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnis 144 (266)
T PRK06171 83 NNAGINFPRLLVDEKAPAGQYELNEAAFEKMVNINQKGVFLMSQAVARQMVKQH-DGVIVNMS 144 (266)
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEC
T ss_conf 888667653212445766545599999999999994999999999999999839-95799805
No 481
>PRK12743 acetoin dehydrogenase; Provisional
Probab=88.33 E-value=2.1 Score=22.71 Aligned_cols=112 Identities=21% Similarity=0.284 Sum_probs=64.2
Q ss_pred CEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEE-ECCCCCHHHHHHHHHHHCCCCCCCCEEE--ECCC-----------HH
Q ss_conf 728998-89-8136899999995799869999-6578812898830762054468875685--2697-----------48
Q gi|254781048|r 4 NKIALI-GS-GMIGGTLAHLAVLKKLGDVVLL-DIVDGMPRGKALDIAESSPVEGFGAQLC--GTSD-----------YS 67 (320)
Q Consensus 4 ~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~-D~~~~~~~g~~~Dl~~~~~~~~~~~~v~--~~~d-----------~~ 67 (320)
+||++| |+ +.+|..+|..++..+. ++++. +++++.++..+..++.. +...... -..| .+
T Consensus 2 ~KValITGgs~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~----g~~~~~~~~Dv~~~~~~~~~~~~~~~ 76 (253)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVVSH----GVRAEIVHLDLSNLPEGAQAIEKLIQ 76 (253)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEECCCCHHHHHHHHHHHHHC----CCCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 99899907588999999999998799-89997489979999999999945----99189999048999999999999999
Q ss_pred HHCCCCEEEEECCCCCC-CC--CCHH---HHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 83789789995566667-65--5746---78998899----9999997654126674088714
Q gi|254781048|r 68 DIAEADVCIVTAGIPRK-PS--MSRD---DLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 68 ~l~~aDivVitag~~~~-~g--~~R~---dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
.+-.-|++|-.||.... |- ++.. ..+..|.. ..+..++.+.+.+..|.+++++
T Consensus 77 ~~G~iDilVNnAG~~~~~~~~~~~~~~w~~~~~vNl~~~f~~~~~~~~~m~k~~~~G~IVnis 139 (253)
T PRK12743 77 RLGRLDVLVNNAGAMTKAPFLDMAFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINIT 139 (253)
T ss_pred HCCCCCEEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 819998999899899999800299999999999985999999999999999758996389996
No 482
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit; InterPro: IPR010046 This entry represents a well-defined clade of molybdopterin-dependent formate dehydrogenases, bacterial type , , , . It represents the alpha subunit, which contains a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulphur clusters and cytochromes.; GO: 0008863 formate dehydrogenase activity, 0030151 molybdenum ion binding, 0051539 4 iron 4 sulfur cluster binding.
Probab=88.30 E-value=0.36 Score=27.67 Aligned_cols=228 Identities=14% Similarity=0.120 Sum_probs=109.6
Q ss_pred HHHHCCCCCCCCEE---------EECCCHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 76205446887568---------526974883789789995566667655746789988999999997654126674088
Q gi|254781048|r 47 IAESSPVEGFGAQL---------CGTSDYSDIAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVI 117 (320)
Q Consensus 47 l~~~~~~~~~~~~v---------~~~~d~~~l~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~i 117 (320)
|.||+..|+..+.+ .++-.|+|++++|++|+.+..|.. |.+-+-....++++.+ +++|
T Consensus 183 lpDcS~mCH~pS~vaL~~SiG~G~g~v~l~D~~~~D~~v~iG~n~gt-----------N~PR~l~~L~~a~~rG--~KiI 249 (824)
T TIGR01701 183 LPDCSNMCHEPSSVALKKSIGIGKGSVLLEDFEHTDLLVLIGSNAGT-----------NHPRMLKELIKAKKRG--AKII 249 (824)
T ss_pred CHHHHHHCCCCCHHHHHHHCCCCEEEEEEEECCCCCEEEEECCCCCC-----------CCCHHHHHHHHHHHCC--CEEE
T ss_conf 13335431686112342202323036773000058379995454898-----------8843688999999639--8399
Q ss_pred EECCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHH-----------HHHHHHHHCCCC---CCCCEEEEECCCCC-----
Q ss_conf 71484207899998844998656110005256899-----------999999971987---33550567507885-----
Q gi|254781048|r 118 CITNPLDAMVWALQKFSGLPSHMVVGMAGILDSAR-----------FRYFLAQEFGVS---VESVTALVLGSHGD----- 178 (320)
Q Consensus 118 vvtNPvDv~~~~~~~~sg~~~~rViG~Gt~LDs~R-----------~~~~ia~~l~v~---~~~V~~~ViGeHGd----- 178 (320)
++ ||.--...+=...=-.|.+-++|.||.+-+.. |.-..-..+.-+ +.+=..-|-|.-|.
T Consensus 250 ~i-NPl~E~GL~rF~~P~~P~~~L~g~gt~I~s~y~Qv~~GGD~Al~~G~~k~LiE~~~~~~A~G~~~vaGqdGkPkdqd 328 (824)
T TIGR01701 250 AI-NPLRERGLERFASPQIPIKMLTGKGTQISSEYYQVRIGGDIALLVGLMKLLIEAEDAVKAAGQPGVAGQDGKPKDQD 328 (824)
T ss_pred EE-CCCCCCHHHHCCCCCCCHHHHCCCCCCEEHEEECCCCCHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCHH
T ss_conf 97-58855011301678876021127873000101047774279999998887632100112367887567788875213
Q ss_pred --EEE-EECCCCCCCCCHH--HHHHHCCCCCHHHHHHHHHHHHCCHHH-HHHHHCCC---------------C--CCCCC
Q ss_conf --246-5102354477015--543001587876799998455101588-88751576---------------5--43220
Q gi|254781048|r 179 --SMV-PMLRYATVSGIPV--SDLVKLGWTTQEKIDQIVKRTREGGAE-IVGLLRSG---------------S--AYYAP 235 (320)
Q Consensus 179 --s~v-p~~S~~~v~g~p~--~~~~~~~~~~~~~~~~l~~~v~~~g~~-ii~~~~kg---------------~--t~~~~ 235 (320)
.|+ -.-|.++...+.+ .+|+...... ++++.+.+++..|+ |.+..|-. + -.||+
T Consensus 329 naa~vafaas~asadnks~~D~~Fi~~HT~G---F~e~~~~~~~~~W~di~~~~GlS~~~i~~~A~~~a~s~r~v~~w~M 405 (824)
T TIGR01701 329 NAAMVAFAASMASADNKSLIDHEFIANHTQG---FDELRRAVLQLEWNDIERVSGLSQEEILEVAKLLANSERVVFCWAM 405 (824)
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHCC---HHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 6899999987753035430007899886027---7899999972470245654111579999999998612472788835
Q ss_pred HH--------HHHHHHHHHH-CC---CCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCE-EEEC-CCCCHHHHHHHHHH
Q ss_conf 32--------3234455452-88---9749999999736447563478876999787228-8847-99988999999999
Q gi|254781048|r 236 AS--------SAIAIAESYL-KN---KKNLLPCAAHLSGQYGVEGFYVGVPVVIGHKGVE-KIVE-LNLSFDEKDAFQKS 301 (320)
Q Consensus 236 a~--------a~~~ii~aIl-~~---~~~v~~~s~~~~g~yg~~~v~~s~P~vig~~Gi~-~i~~-l~Ls~~E~~~l~~s 301 (320)
+. .+..+++-.| ++ ++-.=. ..+.|+-+++|- +.-||. -+++ -++.++-.++|.+-
T Consensus 406 GlTQH~~gv~Ni~~v~NlaLl~G~IGK~GAG~--cP~RGHSNVQG~--------r~mGi~PfvLPGe~~~~e~l~~L~~~ 475 (824)
T TIGR01701 406 GLTQHAHGVDNISQVANLALLRGNIGKPGAGV--CPIRGHSNVQGD--------RTMGITPFVLPGEKLEEEFLARLSQV 475 (824)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCCCC--------CCEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 55787776432999999998425778888860--334477774667--------40310455648988437999999887
No 483
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=88.26 E-value=1.8 Score=23.21 Aligned_cols=108 Identities=14% Similarity=0.200 Sum_probs=56.0
Q ss_pred CCCEEEEECCCCHHHH-HHHHHHHCCCCE--------EE--EEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHC
Q ss_conf 9872899889813689-999999579986--------99--996578812898830762054468875685269748837
Q gi|254781048|r 2 KSNKIALIGSGMIGGT-LAHLAVLKKLGD--------VV--LLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIA 70 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~-~a~~~~~~~l~e--------i~--L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~ 70 (320)
|.-||.++|.+.||.+ +......+...+ .. -+.++... ..+++.|++.... ..+-...-.+
T Consensus 1 r~~Kiv~lGd~~VGKTsli~r~~~~~f~~~~~pTi~~~~~~~i~i~~~~---~~l~iwDtaGqe~-----~~~l~~~~~r 72 (172)
T cd04141 1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEP---ALLDILDTAGQAE-----FTAMRDQYMR 72 (172)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCEE---EEEEEEECCCCCC-----CCCCHHHHHC
T ss_conf 9069999999997799999999709899875884222036999999999---9999997888513-----5745155642
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHH
Q ss_conf 8978999556666765574678998899999999765412667408871484207
Q gi|254781048|r 71 EADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDA 125 (320)
Q Consensus 71 ~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv 125 (320)
+||.+++.-..-. .+-++ |++-..+...++. .+++..+++|.|=+|.
T Consensus 73 ~a~~~ilvydvt~------~~Sf~-~~~~w~~~i~~~~-~~~~~piilvGNK~DL 119 (172)
T cd04141 73 CGEGFIICYSVTD------RHSFQ-EASEFKKLITRVR-LTEDIPLVLVGNKVDL 119 (172)
T ss_pred CCCEEEEEECCCC------HHHHH-HHHHHHHHHHHHH-CCCCCCEEEEEECCCH
T ss_conf 7865688731688------88999-9999999999972-8899868998504566
No 484
>PRK08244 hypothetical protein; Provisional
Probab=88.16 E-value=0.93 Score=25.02 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=27.1
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 7289988981368999999957998699996578
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
.-|.|||+|-||.++|.+|...++. ..++|+.+
T Consensus 3 tDVlIVGaGPvGL~lAl~La~~Gv~-v~vvEr~~ 35 (494)
T PRK08244 3 TDVIIIGGGPVGLMLASELALAGVR-TCVIERLK 35 (494)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCC-EEEEECCC
T ss_conf 8999999478999999999977999-99990899
No 485
>PRK08589 short chain dehydrogenase; Validated
Probab=88.09 E-value=2.2 Score=22.61 Aligned_cols=111 Identities=20% Similarity=0.202 Sum_probs=60.7
Q ss_pred CEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-----------HHHC
Q ss_conf 728998-89-8136899999995799869999657881289883076205446887568526974-----------8837
Q gi|254781048|r 4 NKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-----------SDIA 70 (320)
Q Consensus 4 ~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-----------~~l~ 70 (320)
.|+++| |+ +.+|..+|..++..+. .+++.|+++ ++...+..+...-. .......-..|. +.+-
T Consensus 6 gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~d~~~-~~~~~~~~i~~~g~--~~~~~~~Dvsd~~~v~~~v~~~~~~~G 81 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAE-AVSETVDKIKSNGG--KAKAYHVDISDEQQVKDFASDIKEQFG 81 (272)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCH-HHHHHHHHHHHCCC--CEEEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 79899978256999999999998699-999983827-89999999995599--489999607999999999999999829
Q ss_pred CCCEEEEECCCCCCCC----CCH---HHHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 8978999556666765----574---678998899----9999997654126674088714
Q gi|254781048|r 71 EADVCIVTAGIPRKPS----MSR---DDLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 71 ~aDivVitag~~~~~g----~~R---~dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
.-|++|..||.....+ .+. ...+..|.. ..+...+.+.+. .|-+++++
T Consensus 82 ~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~f~~~~~~~p~m~~~--gG~IVnis 140 (272)
T PRK08589 82 HIDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTS 140 (272)
T ss_pred CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCEEEEEE
T ss_conf 987899898667888871009999999999998299999999999999975--99079991
No 486
>PRK05868 hypothetical protein; Validated
Probab=88.07 E-value=1.1 Score=24.53 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=29.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 728998898136899999995799869999657881
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGM 39 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~ 39 (320)
+||.|+|+|-.|-++|+.|...++ ++.++++.+..
T Consensus 2 ~kVlIvGaGiAGlalA~~L~r~G~-~VtV~Er~p~~ 36 (372)
T PRK05868 2 KTVLVSGASVAGTAAAYWLGRHGY-SVTMVERHPGL 36 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCCC
T ss_conf 999998988899999999985899-88999579998
No 487
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=88.06 E-value=1.5 Score=23.58 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=37.1
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCC-EEEEEEC-CCCCHHHHHHHHHHHCCCCCCCCEEEECCCHH-HHCCCCEEEE
Q ss_conf 9987289988981368999999957998-6999965-78812898830762054468875685269748-8378978999
Q gi|254781048|r 1 MKSNKIALIGSGMIGGTLAHLAVLKKLG-DVVLLDI-VDGMPRGKALDIAESSPVEGFGAQLCGTSDYS-DIAEADVCIV 77 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~~~a~~~~~~~l~-ei~L~D~-~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~-~l~~aDivVi 77 (320)
+|.+||+|||.|.=|-+-+.-+.-.++. -+.|=.- .+++-+.+..-.+ .++ ...+|+ ...+||+|++
T Consensus 35 LKgKkI~IiG~GsQG~aqaLNlRDSGldV~~~LR~~si~~k~~Sw~~A~~-----~Gf-----~V~t~eeai~~ADvV~~ 104 (489)
T PRK05225 35 LKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE-----NGF-----KVGTYEELIPQADLVVN 104 (489)
T ss_pred HCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH-----CCC-----CCCCHHHHHHCCCEEEE
T ss_conf 52885999803658777652441058856999555303341667999997-----799-----64678997323587887
Q ss_pred ECCCCCCCCCCHHHH
Q ss_conf 556666765574678
Q gi|254781048|r 78 TAGIPRKPSMSRDDL 92 (320)
Q Consensus 78 tag~~~~~g~~R~dl 92 (320)
- .|++...++
T Consensus 105 L-----tPD~q~~~v 114 (489)
T PRK05225 105 L-----TPDKQHSDV 114 (489)
T ss_pred E-----CCCCCHHHH
T ss_conf 0-----885514899
No 488
>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () . The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=87.95 E-value=1.6 Score=23.51 Aligned_cols=110 Identities=19% Similarity=0.304 Sum_probs=58.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHH-H-CCCCCCCCEEEECCCH---HHH------C
Q ss_conf 987289988981368999999957998699996578812898830762-0-5446887568526974---883------7
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAE-S-SPVEGFGAQLCGTSDY---SDI------A 70 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~-~-~~~~~~~~~v~~~~d~---~~l------~ 70 (320)
.++||.|||.|. |+.+==.+..+.+-++.|+||++.--+--..=|-. + .++-+-..++.-.+-. .++ +
T Consensus 75 NPk~VLvIGGGD-GG~lREV~KH~sVE~~~lVdID~~VI~~srkyLP~~~~g~~dderv~~~i~DG~~fl~~~Gasdv~~ 153 (284)
T TIGR00417 75 NPKKVLVIGGGD-GGVLREVVKHKSVEKATLVDIDEKVIELSRKYLPKLAAGSFDDERVDLAIDDGFKFLRDTGASDVEK 153 (284)
T ss_pred CCCEEEEEECCC-CCEEEEEEECCCCCEEEEEECCHHHHHHHHHHCHHHHCCCCCCCEEEEEECCCHHHHHHCCCCCCCC
T ss_conf 885478996388-8468788755981679999727478999888261210566588803589825179897615222212
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 89789995566667655746789988999999997654126674088714
Q gi|254781048|r 71 EADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 71 ~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvt 120 (320)
-=||||.=..-|-.|+++ |++ ..-++.+.+.+. |+||++.=|
T Consensus 154 ~fDVIIvDstDPvGPa~~---LF~--~~Fy~~~~~aL~---~~Gv~v~Qs 195 (284)
T TIGR00417 154 KFDVIIVDSTDPVGPAET---LFT--KEFYELLKKALN---EDGVIVAQS 195 (284)
T ss_pred CCCEEEEECCCCCCCCCC---HHH--HHHHHHHHHHCC---CCCEEEEEC
T ss_conf 144799727789565541---021--799999998529---998899802
No 489
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=87.89 E-value=1.1 Score=24.65 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=27.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCC-CEEEEEECCC
Q ss_conf 728998898136899999995799-8699996578
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKL-GDVVLLDIVD 37 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l-~ei~L~D~~~ 37 (320)
+-|.|||+|-+|.++|..+...+. ..+.++|..+
T Consensus 2 ~DV~IVGaGpvGl~lAl~L~~~G~~~~v~vie~~~ 36 (403)
T PRK07333 2 RDVVIAGGGYVGLALAVALKQAAPHLPVIVVDAAP 36 (403)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 83999994699999999998469996699982886
No 490
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=87.86 E-value=2.2 Score=22.52 Aligned_cols=112 Identities=25% Similarity=0.295 Sum_probs=64.6
Q ss_pred EEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-----------HHHCC
Q ss_conf 28998-89-8136899999995799869999657881289883076205446887568526974-----------88378
Q gi|254781048|r 5 KIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-----------SDIAE 71 (320)
Q Consensus 5 KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-----------~~l~~ 71 (320)
|+++| |+ +.+|..+|..++..+. ++++.|++++.++-.+.++++.-. ..+ ....-.++. +.+-.
T Consensus 11 K~alVTG~s~GIG~aiA~~la~~Ga-~Vii~~~~~~~~~~~~~~~~~~g~-~~~-~~~~Dvt~~~~v~~~~~~~~~~~g~ 87 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAEAGA-TIVFNDIKQELVDKGLAAYRELGI-EAH-GYVCDVTDEDGIQAMVAQIEKEVGV 87 (265)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC-CEE-EEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 9899958576899999999998699-999995998999999999995499-179-9993289999999999999998299
Q ss_pred CCEEEEECCCCCCCC---CCHH---HHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 978999556666765---5746---78998899----9999997654126674088714
Q gi|254781048|r 72 ADVCIVTAGIPRKPS---MSRD---DLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 72 aDivVitag~~~~~g---~~R~---dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
-|++|..||...... .+.. ..+..|.. ..+...+.+.+.. .|-++.++
T Consensus 88 iDiLVnNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~IVnis 145 (265)
T PRK07097 88 IDILVNNAGIIRRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVLPSMIKKG-HGKIINIC 145 (265)
T ss_pred CCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEEE
T ss_conf 98999899899998826599999999999860728999999999899808-97599990
No 491
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=87.85 E-value=1 Score=24.78 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=28.1
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 7289988981368999999957998699996578
Q gi|254781048|r 4 NKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVD 37 (320)
Q Consensus 4 ~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~ 37 (320)
.-|.|||+|-+|.++|..|...++. ..++|...
T Consensus 13 ~dVlIVGaGPvGL~lA~~Lar~Gi~-v~vvEr~~ 45 (554)
T PRK06183 13 TDVVIVGAGPVGLTLANLLGQQGVR-VLVLERWP 45 (554)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCC-EEEEECCC
T ss_conf 8889999598999999999977999-99991899
No 492
>KOG0685 consensus
Probab=87.83 E-value=1.1 Score=24.61 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=26.5
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 987289988981368999999957998699996
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLD 34 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D 34 (320)
+.+||.|||||.-|-+.|..+..++..++.++.
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlE 52 (498)
T KOG0685 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILE 52 (498)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 796499989856779999999982896489997
No 493
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=87.81 E-value=2.2 Score=22.55 Aligned_cols=103 Identities=18% Similarity=0.178 Sum_probs=54.8
Q ss_pred EEEEECCCCHHHH-HHHHHHHCCCCE--------EEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEE
Q ss_conf 2899889813689-999999579986--------9999657881289883076205446887568526974883789789
Q gi|254781048|r 5 KIALIGSGMIGGT-LAHLAVLKKLGD--------VVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVC 75 (320)
Q Consensus 5 KV~IIGaG~VG~~-~a~~~~~~~l~e--------i~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDiv 75 (320)
||.++|.+.||.+ +......+...+ ...-+. .-.-+.|.|++--.. +.+-...=.++|+.+
T Consensus 2 KivllGd~~VGKTsl~~rf~~~~F~~~~~Tig~~~~~k~~-----~~~~l~IwDTaGqE~-----f~sl~~~y~r~a~~~ 71 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQW-----GPYNISIWDTAGREQ-----FHGLGSMYCRGAAAV 71 (220)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEC-----CEEEEEEEECCCCCC-----CCCCHHHHHCCCCEE
T ss_conf 8999999998899999999729899988871368999876-----478899994798622-----433268885679889
Q ss_pred EEECCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHCCCCCCEEEECCCCHHHH
Q ss_conf 9955666676557467899889-999999976541266740887148420789
Q gi|254781048|r 76 IVTAGIPRKPSMSRDDLLADNL-KAIEKVGAGIRKYAPNSFVICITNPLDAMV 127 (320)
Q Consensus 76 Vitag~~~~~g~~R~dll~~N~-~i~~~i~~~i~~~~p~~i~ivvtNPvDv~~ 127 (320)
++.--... .+-+. |. ..+.++- ....++..+++|.|=+|...
T Consensus 72 ilvyDit~------~~Sf~-~l~~~~~~~~---~~~~~~~~~ilVGNK~DL~~ 114 (220)
T cd04126 72 ILTYDVSN------VQSLE-ELEDRFLGLT---DTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred EEEEECCC------HHHHH-HHHHHHHHHH---HHCCCCCEEEEEEECHHCCC
T ss_conf 99997989------89999-9999999999---84799980899988712136
No 494
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=87.80 E-value=1.2 Score=24.33 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=29.2
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 98728998898136899999995799869999657
Q gi|254781048|r 2 KSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIV 36 (320)
Q Consensus 2 k~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~ 36 (320)
..--|.|||||--|+++|+.++..+ .++++++..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G-~~VlvlEk~ 35 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAG-LDVLVLEKG 35 (396)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHCC-CEEEEEECC
T ss_conf 4788999897889999999998579-929999657
No 495
>PTZ00132 GTP-binding nuclear protein; Provisional
Probab=87.79 E-value=2.3 Score=22.50 Aligned_cols=107 Identities=15% Similarity=0.210 Sum_probs=56.3
Q ss_pred CCCCEEEEECCCCHHH-HHHHHHHHCCCC---------EEE--EEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHH
Q ss_conf 9987289988981368-999999957998---------699--9965788128988307620544688756852697488
Q gi|254781048|r 1 MKSNKIALIGSGMIGG-TLAHLAVLKKLG---------DVV--LLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSD 68 (320)
Q Consensus 1 mk~~KV~IIGaG~VG~-~~a~~~~~~~l~---------ei~--L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~ 68 (320)
|.+-||.++|.+.||. ++.+....+... +.. .+..+... ..+.+.|.+-...+.. -...-
T Consensus 4 ip~~KIvllGd~~VGKTsLi~r~~~~~F~~~y~pTig~d~~~~~~~~~~~~---i~l~IwDTaGqe~f~s-----l~~~y 75 (209)
T PTZ00132 4 VAQFKLILVGDGGVGKTTFVKRHLTGEFEKKYIATLGVEVHPLKFYTNRGK---ICFNVWDTAGQEKFGG-----LRDGY 75 (209)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEE---EEEEEEECCCCCCCCC-----CCCHH
T ss_conf 876899999999967899999997199699877760279899999999999---9999998999744556-----65144
Q ss_pred HCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHH
Q ss_conf 378978999556666765574678998899999999765412667408871484207
Q gi|254781048|r 69 IAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLDA 125 (320)
Q Consensus 69 l~~aDivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvDv 125 (320)
.++|+.+++.--.. +.+-++.=..++++ +.+++++..+++|.|=+|.
T Consensus 76 yr~a~~~ilVfDit------~~~SF~~l~~W~~e----i~~~~~~ipivLVGNK~DL 122 (209)
T PTZ00132 76 YIKGQCAIIMFDVT------SRITYKNVPNWHRD----ITRVCENIPIVLVGNKVDV 122 (209)
T ss_pred HCCCCEEEEEECCC------CHHHHHHHHHHHHH----HHHHCCCCCEEEEEECCCC
T ss_conf 24898899984378------87899999999999----9986899878999762322
No 496
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=87.71 E-value=2.3 Score=22.48 Aligned_cols=55 Identities=25% Similarity=0.475 Sum_probs=36.6
Q ss_pred CCCEEEEECCC-CHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCH-HHHCCCCEEEEEC
Q ss_conf 98728998898-136899999995799869999657881289883076205446887568526974-8837897899955
Q gi|254781048|r 2 KSNKIALIGSG-MIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDY-SDIAEADVCIVTA 79 (320)
Q Consensus 2 k~~KV~IIGaG-~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~-~~l~~aDivVita 79 (320)
+.+++.|||.+ -||..++.++..++. .+.+.+ ..+.+. +.++.|||+|.++
T Consensus 43 ~Gk~vvViGrS~iVG~Pla~lL~~~~a-tVt~ch--------------------------s~T~~l~~~~~~ADIvIsA~ 95 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCH--------------------------SKTKNLKEHTKQADIVIVAV 95 (168)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC-EEEEEC--------------------------CCCCCHHHHHHHCCEEEEEC
T ss_conf 785699987873008999999984899-799976--------------------------89889799741045355415
Q ss_pred CCCC
Q ss_conf 6666
Q gi|254781048|r 80 GIPR 83 (320)
Q Consensus 80 g~~~ 83 (320)
|.|.
T Consensus 96 G~~~ 99 (168)
T cd01080 96 GKPG 99 (168)
T ss_pred CCCC
T ss_conf 8766
No 497
>PRK06227 consensus
Probab=87.54 E-value=2.3 Score=22.40 Aligned_cols=115 Identities=19% Similarity=0.228 Sum_probs=63.0
Q ss_pred CEEEEE-CC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCC-CCCCCCEEEECCC--------HHHHCCC
Q ss_conf 728998-89-81368999999957998699996578812898830762054-4688756852697--------4883789
Q gi|254781048|r 4 NKIALI-GS-GMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSP-VEGFGAQLCGTSD--------YSDIAEA 72 (320)
Q Consensus 4 ~KV~II-Ga-G~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~-~~~~~~~v~~~~d--------~~~l~~a 72 (320)
.|+++| |+ +.+|..+|..++..+ +.+++.|++++.++.....+...-. .......+....+ .+.+-.-
T Consensus 5 gKvalVTGas~GIG~aiA~~la~~G-a~V~i~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~i 83 (256)
T PRK06227 5 GKVAIVTGGGQGIGAAIAQTFAENG-AKVVIADIDEEAGLEREEMLRSNGLDALFVKTDVSDEEDVKNMVRKTVERYGGI 83 (256)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9889995866889999999999879-999999698889999999999559918999816899999999999999982999
Q ss_pred CEEEEECCCCC-CCCC--CHH---HHHHHHHH----HHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 78999556666-7655--746---78998899----9999997654126674088714
Q gi|254781048|r 73 DVCIVTAGIPR-KPSM--SRD---DLLADNLK----AIEKVGAGIRKYAPNSFVICIT 120 (320)
Q Consensus 73 DivVitag~~~-~~g~--~R~---dll~~N~~----i~~~i~~~i~~~~p~~i~ivvt 120 (320)
|++|-.||... ++-. +.. ..+..|.. ..+...+.+++.. .|.+++++
T Consensus 84 DiLVNNAGi~~~~~~~~~~~e~w~~~~~vNl~g~f~~~~~~~p~m~~~~-~G~IVnis 140 (256)
T PRK06227 84 DILINNAGIFSGKSIFERTLEEWERVIRVNLTGPYLCSKYAAEEMIKNG-GGVIINIA 140 (256)
T ss_pred CEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEC
T ss_conf 7999899899998903498999999999982999999999999999849-97799962
No 498
>pfam00670 AdoHcyase_NAD S-adenosyl-L-homocysteine hydrolase, NAD binding domain.
Probab=87.52 E-value=2.4 Score=22.39 Aligned_cols=67 Identities=19% Similarity=0.218 Sum_probs=43.4
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEEECCCC
Q ss_conf 87289988981368999999957998699996578812898830762054468875685269748837897899955666
Q gi|254781048|r 3 SNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAGIP 82 (320)
Q Consensus 3 ~~KV~IIGaG~VG~~~a~~~~~~~l~ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDivVitag~~ 82 (320)
-+++.|+|-|.+|.-+|..+...+ +.+...++++-++---.|| ++.. ....++++.+|++|-+.|.+
T Consensus 23 Gk~vvV~GYG~~GkGvA~~~rg~G-a~V~V~EvDPi~aleA~md--------Gf~V----~~~~ea~~~aDi~VTaTG~~ 89 (162)
T pfam00670 23 GKVAVVCGYGDVGKGCAASLKGQG-ARVIVTEIDPICALQAAME--------GFQV----VTLEEVVKKADIFVTTTGNK 89 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCC-CEEEEEECCCHHHHHHHHC--------CCCC----CCHHHHHHCCCEEEECCCCC
T ss_conf 878999678766777999862299-9899994793069999864--------9954----78889860499999924897
No 499
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=87.49 E-value=2.2 Score=22.52 Aligned_cols=104 Identities=16% Similarity=0.247 Sum_probs=0.0
Q ss_pred EEEEECCCCHH-HHHHHHHHHCC--------CC-EEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCE
Q ss_conf 28998898136-89999999579--------98-6999965788128988307620544688756852697488378978
Q gi|254781048|r 5 KIALIGSGMIG-GTLAHLAVLKK--------LG-DVVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEADV 74 (320)
Q Consensus 5 KV~IIGaG~VG-~~~a~~~~~~~--------l~-ei~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~aDi 74 (320)
||.++|.+.|| +++......+. +. +..-..+..+.-. ..+.+.|++ .-....+-...-.++||.
T Consensus 2 KivlvGd~~VGKTsli~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~-v~l~iwDta-----Gqe~~~~l~~~y~~~a~~ 75 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGK-IRFNVWDTA-----GQEKFGGLRDGYYIGGQC 75 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEE-EEEEEEECC-----CCHHHHHHHHHHHCCCCE
T ss_conf 89999999988899999998399999868732556799999999979-999999757-----871566687887400657
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCH
Q ss_conf 99955666676557467899889999999976541266740887148420
Q gi|254781048|r 75 CIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLD 124 (320)
Q Consensus 75 vVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvD 124 (320)
+++.-.. +..+-+.. ++...+.+.+.+|+.-+++|.|=+|
T Consensus 76 ~ilvyDv------t~~~Sf~~----v~~w~~~i~~~~~~~piilVgNK~D 115 (166)
T cd00877 76 AIIMFDV------TSRVTYKN----VPNWHRDLVRVCGNIPIVLCGNKVD 115 (166)
T ss_pred EEEECCC------CCHHHHHH----HHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 9984378------98889999----9999999998689998999998621
No 500
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=87.49 E-value=1.8 Score=23.18 Aligned_cols=102 Identities=18% Similarity=0.162 Sum_probs=0.0
Q ss_pred EEEEECCCCHH-HHHHHHHHHCCCCE-----------EEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHCCC
Q ss_conf 28998898136-89999999579986-----------9999657881289883076205446887568526974883789
Q gi|254781048|r 5 KIALIGSGMIG-GTLAHLAVLKKLGD-----------VVLLDIVDGMPRGKALDIAESSPVEGFGAQLCGTSDYSDIAEA 72 (320)
Q Consensus 5 KV~IIGaG~VG-~~~a~~~~~~~l~e-----------i~L~D~~~~~~~g~~~Dl~~~~~~~~~~~~v~~~~d~~~l~~a 72 (320)
||.++|.+.|| +++......+...+ ..-+.++... ..++|.|.+ .-.....-...-+++|
T Consensus 2 KivlvGd~~VGKTsLi~rf~~~~F~~~y~~Tig~d~~~k~i~v~~~~---v~l~iwDta-----Gqe~f~~~~~~y~~~a 73 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTE---ITFSIWDLG-----GQREFINMLPLVCNDA 73 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEE---EEEEEEECC-----CCHHHHHHHHHHHCCC
T ss_conf 89999999989899999995399999988873389899999999999---999998677-----6487899999986478
Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCH
Q ss_conf 7899955666676557467899889999999976541266740887148420
Q gi|254781048|r 73 DVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICITNPLD 124 (320)
Q Consensus 73 DivVitag~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~~i~ivvtNPvD 124 (320)
+.+++.--. ++.+-+.. +++..+.+.+++++.+.++|.|=+|
T Consensus 74 ~~~ilvfDi------t~~~Sf~~----~~~w~~~i~~~~~~~~~ilVGnK~D 115 (182)
T cd04128 74 VAILFMFDL------TRKSTLNS----IKEWYRQARGFNKTAIPILVGTKYD 115 (182)
T ss_pred CEEEEEEEC------CCHHHHHH----HHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 789999978------99899998----9999999997689998899998663
Done!