BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781048|ref|YP_003065461.1| malate dehydrogenase
[Candidatus Liberibacter asiaticus str. psy62]
(320 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781048|ref|YP_003065461.1| malate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
Length = 320
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/320 (100%), Positives = 320/320 (100%)
Query: 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQL 60
MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQL
Sbjct: 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQL 60
Query: 61 CGTSDYSDIAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICIT 120
CGTSDYSDIAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICIT
Sbjct: 61 CGTSDYSDIAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICIT 120
Query: 121 NPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQEFGVSVESVTALVLGSHGDSM 180
NPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQEFGVSVESVTALVLGSHGDSM
Sbjct: 121 NPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQEFGVSVESVTALVLGSHGDSM 180
Query: 181 VPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLLRSGSAYYAPASSAI 240
VPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLLRSGSAYYAPASSAI
Sbjct: 181 VPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLLRSGSAYYAPASSAI 240
Query: 241 AIAESYLKNKKNLLPCAAHLSGQYGVEGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQK 300
AIAESYLKNKKNLLPCAAHLSGQYGVEGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQK
Sbjct: 241 AIAESYLKNKKNLLPCAAHLSGQYGVEGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQK 300
Query: 301 SVKATVDLCNSCTKLVPSLV 320
SVKATVDLCNSCTKLVPSLV
Sbjct: 301 SVKATVDLCNSCTKLVPSLV 320
>gi|254780674|ref|YP_003065087.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 423
Score = 25.8 bits (55), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 237 SSAIAIAESYLKNKKNLLPCAAHLSGQYGVE 267
SS + + E + KN+ P A L+G++G++
Sbjct: 106 SSPVVVREKHSKNRPIASPLARRLAGEHGID 136
>gi|254780638|ref|YP_003065051.1| molecular chaperone protein DnaJ [Candidatus Liberibacter asiaticus
str. psy62]
Length = 384
Score = 25.0 bits (53), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 48 AESSPVEGFGAQLCGTSDYSDIAEA 72
A+S GFGA + G SD+S++ E
Sbjct: 78 AQSQGAGGFGAGMYGNSDFSELFEG 102
>gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 429
Score = 23.9 bits (50), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 272 GVPVVIGHKGVEKIVELNLSFDEK 295
G PVVIGH+ +++ E+ +S EK
Sbjct: 176 GCPVVIGHQVYDEVREILVSKAEK 199
>gi|254780172|ref|YP_003064585.1| general L-amino acid transport system permease protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 386
Score = 23.9 bits (50), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 161 FGVSVESVTALVLGSHGDSMVPMLRYATVSGI 192
FG+ + ++L +S +P+LRYA ++ I
Sbjct: 186 FGIIISMPLGILLALGRNSNIPVLRYACITFI 217
>gi|254780873|ref|YP_003065286.1| aspartate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 411
Score = 23.9 bits (50), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 95 DNLKAIEKVGAGIRKYA--PNSFVICI 119
DNL I +G G++ YA ++F +C+
Sbjct: 343 DNLVKISAIGIGMQSYAGVASAFFLCL 369
>gi|254780283|ref|YP_003064696.1| thioredoxin reductase (NADPH) protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 321
Score = 23.5 bits (49), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 43 KALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80
K L + +GFG C T D DV +V G
Sbjct: 118 KWLRLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGG 155
>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
Length = 647
Score = 23.5 bits (49), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 50 SSPVEGFGAQLCGTSDYSDIAEADV-CIVTAGIPRKPSMSRDDLLADNLKAIE 101
S P E G LC + + + EA+V C S + DDL ++ K+++
Sbjct: 595 SRPSEDDGVALCASVPQAGVQEAEVSCSEEKDNENIDSSNTDDLEKEDTKSVQ 647
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,020
Number of Sequences: 1233
Number of extensions: 8485
Number of successful extensions: 22
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 10
length of query: 320
length of database: 328,796
effective HSP length: 74
effective length of query: 246
effective length of database: 237,554
effective search space: 58438284
effective search space used: 58438284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 38 (19.2 bits)