BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781048|ref|YP_003065461.1| malate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (320 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781048|ref|YP_003065461.1| malate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 320 Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/320 (100%), Positives = 320/320 (100%) Query: 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQL 60 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQL Sbjct: 1 MKSNKIALIGSGMIGGTLAHLAVLKKLGDVVLLDIVDGMPRGKALDIAESSPVEGFGAQL 60 Query: 61 CGTSDYSDIAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICIT 120 CGTSDYSDIAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICIT Sbjct: 61 CGTSDYSDIAEADVCIVTAGIPRKPSMSRDDLLADNLKAIEKVGAGIRKYAPNSFVICIT 120 Query: 121 NPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQEFGVSVESVTALVLGSHGDSM 180 NPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQEFGVSVESVTALVLGSHGDSM Sbjct: 121 NPLDAMVWALQKFSGLPSHMVVGMAGILDSARFRYFLAQEFGVSVESVTALVLGSHGDSM 180 Query: 181 VPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLLRSGSAYYAPASSAI 240 VPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLLRSGSAYYAPASSAI Sbjct: 181 VPMLRYATVSGIPVSDLVKLGWTTQEKIDQIVKRTREGGAEIVGLLRSGSAYYAPASSAI 240 Query: 241 AIAESYLKNKKNLLPCAAHLSGQYGVEGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQK 300 AIAESYLKNKKNLLPCAAHLSGQYGVEGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQK Sbjct: 241 AIAESYLKNKKNLLPCAAHLSGQYGVEGFYVGVPVVIGHKGVEKIVELNLSFDEKDAFQK 300 Query: 301 SVKATVDLCNSCTKLVPSLV 320 SVKATVDLCNSCTKLVPSLV Sbjct: 301 SVKATVDLCNSCTKLVPSLV 320 >gi|254780674|ref|YP_003065087.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 423 Score = 25.8 bits (55), Expect = 0.94, Method: Compositional matrix adjust. Identities = 10/31 (32%), Positives = 19/31 (61%) Query: 237 SSAIAIAESYLKNKKNLLPCAAHLSGQYGVE 267 SS + + E + KN+ P A L+G++G++ Sbjct: 106 SSPVVVREKHSKNRPIASPLARRLAGEHGID 136 >gi|254780638|ref|YP_003065051.1| molecular chaperone protein DnaJ [Candidatus Liberibacter asiaticus str. psy62] Length = 384 Score = 25.0 bits (53), Expect = 1.6, Method: Compositional matrix adjust. Identities = 11/25 (44%), Positives = 16/25 (64%) Query: 48 AESSPVEGFGAQLCGTSDYSDIAEA 72 A+S GFGA + G SD+S++ E Sbjct: 78 AQSQGAGGFGAGMYGNSDFSELFEG 102 >gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str. psy62] Length = 429 Score = 23.9 bits (50), Expect = 3.4, Method: Compositional matrix adjust. Identities = 11/24 (45%), Positives = 17/24 (70%) Query: 272 GVPVVIGHKGVEKIVELNLSFDEK 295 G PVVIGH+ +++ E+ +S EK Sbjct: 176 GCPVVIGHQVYDEVREILVSKAEK 199 >gi|254780172|ref|YP_003064585.1| general L-amino acid transport system permease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 386 Score = 23.9 bits (50), Expect = 4.3, Method: Compositional matrix adjust. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 161 FGVSVESVTALVLGSHGDSMVPMLRYATVSGI 192 FG+ + ++L +S +P+LRYA ++ I Sbjct: 186 FGIIISMPLGILLALGRNSNIPVLRYACITFI 217 >gi|254780873|ref|YP_003065286.1| aspartate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 411 Score = 23.9 bits (50), Expect = 4.3, Method: Compositional matrix adjust. Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%) Query: 95 DNLKAIEKVGAGIRKYA--PNSFVICI 119 DNL I +G G++ YA ++F +C+ Sbjct: 343 DNLVKISAIGIGMQSYAGVASAFFLCL 369 >gi|254780283|ref|YP_003064696.1| thioredoxin reductase (NADPH) protein [Candidatus Liberibacter asiaticus str. psy62] Length = 321 Score = 23.5 bits (49), Expect = 5.4, Method: Compositional matrix adjust. Identities = 12/38 (31%), Positives = 15/38 (39%) Query: 43 KALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80 K L + +GFG C T D DV +V G Sbjct: 118 KWLRLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGG 155 >gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62] Length = 647 Score = 23.5 bits (49), Expect = 5.6, Method: Compositional matrix adjust. Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 50 SSPVEGFGAQLCGTSDYSDIAEADV-CIVTAGIPRKPSMSRDDLLADNLKAIE 101 S P E G LC + + + EA+V C S + DDL ++ K+++ Sbjct: 595 SRPSEDDGVALCASVPQAGVQEAEVSCSEEKDNENIDSSNTDDLEKEDTKSVQ 647 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.136 0.391 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 203,020 Number of Sequences: 1233 Number of extensions: 8485 Number of successful extensions: 22 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 10 length of query: 320 length of database: 328,796 effective HSP length: 74 effective length of query: 246 effective length of database: 237,554 effective search space: 58438284 effective search space used: 58438284 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 38 (19.2 bits)