HHsearch alignment for GI: 254781049 and conserved domain: COG1042

Probab=99.47  E-value=4.6e-14  Score=112.33  Aligned_cols=117  Identities=26%  Similarity=0.374  Sum_probs=103.2

Q ss_pred             CCCHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHH
Q ss_conf             86579999999986898888157479999999998729986999712136876565655677777770799589999999
Q gi|254781049|r    2 NIHEYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVIS   81 (398)
Q Consensus         2 ~L~EyqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~   81 (398)
T Consensus       470 ~~~~~e~~~~l~~~gi~~~~~-~~~~~~ea~~~a~~~~------Kl---------~s~~i~hksev~gv~l~~~~~~v~~  533 (598)
T COG1042         470 TLDEPEAKELLEAYGIPVPAT-IASTLDEAVHIAESIG------KL---------RSPDIDHKSEVGGVMLNRTADAVEK  533 (598)
T ss_pred             CCCCHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHH------HC---------CCCCCCHHHHCCCEEECCCHHHHHH
T ss_conf             157431455799846865654-5679899999999741------20---------4674211342166042673999999


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHH
Q ss_conf             9998618765442122222443301103455565058999998347780489984478840245557
Q gi|254781049|r   82 DIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAK  148 (398)
Q Consensus        82 ~a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~GGvdIE~va~  148 (398)
T Consensus       534 a~~~~~~~--------p--a~i~g~lvq~m~~--~E~~vgv~~dp~fg-p~i~~G-~Gg~~ve~l~d  586 (598)
T COG1042         534 AADDILAR--------P--ARIAGVLVQTMAK--LELIVGVKNDPTFG-PLILFG-EGGIEVEVLKD  586 (598)
T ss_pred             HHHHHHCC--------C--CHHHEEEHHHHHH--CCCEEECCCCCCCH-HHHHHC-CCCEEEEEECC
T ss_conf             99877506--------5--5002001576640--04122113888603-698853-78648884226