HHsearch alignment for GI: 254781049 and conserved domain: PRK10355
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional.
Probab=93.15 E-value=0.71 Score=25.45 Aligned_cols=87 Identities=8% Similarity=0.095 Sum_probs=64.2
Q ss_pred CCCCCHHHHHHHHHH-HHCCCC-CCEEEEECCCCHHHHHHHHHHHHHHHHHCCCC-CCEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 788898999999999-861998-65899963586132899999999999972999-879997489858999999997699
Q gi|254781049|r 300 GGGADQDKVAAAFKI-ITSDSS-VKGILINIFGGIMRCDVLVKGILSAVKEVKIN-IPLVMRLEGANVDIGNRLIAESGL 376 (398)
Q Consensus 300 gG~a~~e~~~~a~~~-il~~~~-vk~iliNifGGI~~cd~vA~gii~a~~~~~~~-~pivvRl~Gtn~~~g~~il~~~g~ 376 (398)
T Consensus 189 ~~~w~~~~A~~~me~~L~a~~~~id~V~-------a~ND~mAlGA~~Al~~aG~~~~v~V~G~Dg~~--~al~~I~~G~~ 259 (330)
T PRK10355 189 VDGWLPENALKIMENALTANNNKIDAVV-------ASNDATAGGAIQALSAQGLSGKVAISGQDADL--AAIKRIVAGTQ 259 (330)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEE-------ECCCCHHHHHHHHHHHCCCCCCCEEECCCCCH--HHHHHHHCCCE
T ss_conf 5642288999999999960998516999-------89971489999999966999997699027998--99999974962
Q ss_pred CEEEECCHHHHHHHHHHHH
Q ss_conf 5899499899999999985
Q gi|254781049|r 377 NVITAIDLDDAAQKIVHAV 395 (398)
Q Consensus 377 ~~~~~~~~~~A~~~~v~~~ 395 (398)
T Consensus 260 ~~Tv~q~~~~~g~~ave~a 278 (330)
T PRK10355 260 TMTVYKPITKLANTAAEIA 278 (330)
T ss_pred EEEEECCHHHHHHHHHHHH
T ss_conf 8998379999999999999