HHsearch alignment for GI: 254781049 and conserved domain: PRK10423
>PRK10423 transcriptional repressor RbsR; Provisional.
Probab=92.27 E-value=0.92 Score=24.69 Aligned_cols=105 Identities=11% Similarity=0.114 Sum_probs=69.6
Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 9999999658996248842788898999999999861-998658999635861328999999999999729998799974
Q gi|254781049|r 281 ATMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIITS-DSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRL 359 (398)
Q Consensus 281 atmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il~-~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl 359 (398)
T Consensus 195 gf~~al~~~gl~~~~~~~~~~~~~~~~g~~~~~~ll~~~~~ptAi~-------~~nD~~A~g~~~al~~~g~~iP~Disv 267 (327)
T PRK10423 195 GYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMQQLLAHPLRPQAVF-------TGNDAMAVGVYQALYQAGLQVPQDIAV 267 (327)
T ss_pred HHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEE-------ECCCHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 9999999859998843699604673789999999984799998455-------178099999999999869999997599
Q ss_pred CCCCHHHHHHHHHHCCCCEE-EECCHHHHHHHHHHHH
Q ss_conf 89858999999997699589-9499899999999985
Q gi|254781049|r 360 EGANVDIGNRLIAESGLNVI-TAIDLDDAAQKIVHAV 395 (398)
Q Consensus 360 ~Gtn~~~g~~il~~~g~~~~-~~~~~~~A~~~~v~~~ 395 (398)
T Consensus 268 igfDd~---~~~~~~~P~LTTv~~~~~~~g~~A~~~L 301 (327)
T PRK10423 268 IGYDDI---ELASYMTPPLTTIHQPKDELGELAIDVL 301 (327)
T ss_pred EEECCC---HHHHHCCCCCEEEECCHHHHHHHHHHHH
T ss_conf 997582---8998269993799839999999999999