HHsearch alignment for GI: 254781049 and conserved domain: PRK10423

>PRK10423 transcriptional repressor RbsR; Provisional.
Probab=92.27  E-value=0.92  Score=24.69  Aligned_cols=105  Identities=11%  Similarity=0.114  Sum_probs=69.6

Q ss_pred             HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             9999999658996248842788898999999999861-998658999635861328999999999999729998799974
Q gi|254781049|r  281 ATMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIITS-DSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRL  359 (398)
Q Consensus       281 atmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il~-~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl  359 (398)
T Consensus       195 gf~~al~~~gl~~~~~~~~~~~~~~~~g~~~~~~ll~~~~~ptAi~-------~~nD~~A~g~~~al~~~g~~iP~Disv  267 (327)
T PRK10423        195 GYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMQQLLAHPLRPQAVF-------TGNDAMAVGVYQALYQAGLQVPQDIAV  267 (327)
T ss_pred             HHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEE-------ECCCHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf             9999999859998843699604673789999999984799998455-------178099999999999869999997599


Q ss_pred             CCCCHHHHHHHHHHCCCCEE-EECCHHHHHHHHHHHH
Q ss_conf             89858999999997699589-9499899999999985
Q gi|254781049|r  360 EGANVDIGNRLIAESGLNVI-TAIDLDDAAQKIVHAV  395 (398)
Q Consensus       360 ~Gtn~~~g~~il~~~g~~~~-~~~~~~~A~~~~v~~~  395 (398)
T Consensus       268 igfDd~---~~~~~~~P~LTTv~~~~~~~g~~A~~~L  301 (327)
T PRK10423        268 IGYDDI---ELASYMTPPLTTIHQPKDELGELAIDVL  301 (327)
T ss_pred             EEECCC---HHHHHCCCCCEEEECCHHHHHHHHHHHH
T ss_conf             997582---8998269993799839999999999999