HHsearch alignment for GI: 254781049 and conserved domain: PRK12815
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed.
Probab=98.42 E-value=5e-05 Score=52.78 Aligned_cols=326 Identities=18% Similarity=0.201 Sum_probs=164.3
Q ss_pred HHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHCC
Q ss_conf 99999868988881574799999999987299869997121368765656556777777707995899999999998618
Q gi|254781049|r 9 KALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIREILG 88 (398)
Q Consensus 9 K~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~~ilg 88 (398)
T Consensus 674 ~~ll~~l~i~~p~~~~~~~~~ea~~~a~~iGyPvlvRPSyvL-gG~~m--------------~iv~~~~eL~~y~~~a~~ 738 (1068)
T PRK12815 674 YQLLDELGLPHVPGLTATSEEEALAFAKRIGYPVLIRPSYVI-GGQGM--------------AVVYDEPALEAYLEENVQ 738 (1068)
T ss_pred HHHHHHCCCCCCCCCEECCHHHHHHHHHHCCCCEEECCCCCC-CCCEE--------------EEECCHHHHHHHHHHHCC
T ss_conf 999997389999963545667999999864997784244335-77423--------------897599999999985157
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHHHHEEEECCCCCCCCHH
Q ss_conf 76544212222244330110345556505899999834778048998447884024555748312203321444578957
Q gi|254781049|r 89 STLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGVTSE 168 (398)
Q Consensus 89 ~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~GGvdIE~va~~~p~~I~~~~id~~~gl~~~ 168 (398)
T Consensus 739 -------------~~~pvlIdkfl~-g~E~evDai~Dg~--~v~I~gImE---HIE~AGVHSGDS~~v~---Pp~~Ls~~ 796 (1068)
T PRK12815 739 -------------QLYPILIDQFID-GKEYEVDAISDGE--DVTIPGIIE---HIEQAGVHSGDSIAVL---PPQSLSPE 796 (1068)
T ss_pred -------------CCCCEEEEECCC-CCEEEEEEEECCC--CEEEEEEEE---CHHHCCCCCCCCEEEE---CCCCCCHH
T ss_conf -------------888556230005-4046889996499--559999642---1131466568854883---89878999
Q ss_pred HHH-------HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEEEEEECCCHHH--H---H
Q ss_conf 888-------788751988899885999999998999955975102326799059967994001321573556--4---1
Q gi|254781049|r 169 DVA-------SLCDMLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDSKISFDDNALY--R---H 236 (398)
Q Consensus 169 ~~~-------~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~Da~liEINPLvvt~dg~vvAlDAKi~iDDnA~f--R---~ 236 (398)
T Consensus 797 ~~~~i~~~t~kia~~L~v~Gl~NiQfa---------vk~~~vyVIEvNpRA----SRTvPFvSKatG~pl~~iAtkvmlG 863 (1068)
T PRK12815 797 QQAKIRDQAIKIAKKLGFRGIMNIQFL---------LAGDEIYVLEVNPRA----SRTVPFVSKATGVPLAKLATKVLLG 863 (1068)
T ss_pred HHHHHHHHHHHHHHHCEEECCEEEEEE---------EECCEEEEEEEECCC----CCCHHHHHHHCCCCHHHHHHHHHCC
T ss_conf 999999999999964835451269999---------979989999961875----5432667873298899999999849
Q ss_pred HHHHHHHCCCCCCH-HHH-HHHHCCCCEEECC-------------CCEEEEECCCHHHHHHHHHHHHCCCC-C---CEEE
Q ss_conf 02786310001562-224-5775398644228-------------81799955503689999999965899-6---2488
Q gi|254781049|r 237 LDIQELRDVSEEDS-REI-EAKQHNLSYIALD-------------GNIGCMVNGAGLAMATMDIIKLYGGA-P---ANFL 297 (398)
Q Consensus 237 ~~~~~~~d~~~~~~-~E~-~A~~~~l~yv~Ld-------------G~Ig~~vnGaGlamatmD~i~~~Gg~-p---ANFl 297 (398)
T Consensus 864 ~~L~~l~~~~~~~p~~~~~~VK~pvFsf~k~~g~d~~LGpEMkSTGEV--mgig~~~~eA~~Ka~~aag~~lP~~G~vfi 941 (1068)
T PRK12815 864 KSLAELGYPNELWPGSNFIHVKMPVFSFLRYPGVDNTLGPEMKSTGEV--MGIDKDLESALYKGYAASDLHIPTYGTIFI 941 (1068)
T ss_pred CCHHHCCCCCCCCCCCCCEEEECCCCCHHHCCCCCCCCCCCCCCCCCC--EEECCCHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 975662886555778882899835487444389998778884223231--562499999999999966998898988999
Q ss_pred ECCCCCCHHHHHHHHHHH----------------HCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf 427888989999999998----------------6199865899963586132899999999999972999879997489
Q gi|254781049|r 298 DVGGGADQDKVAAAFKII----------------TSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLEG 361 (398)
Q Consensus 298 D~gG~a~~e~~~~a~~~i----------------l~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~G 361 (398)
T Consensus 942 Sv~d-~DK~~~~~~a~~l~~lGf~i~AT~GTa~~L~~~GI~~~~V~Kv~eg------~p~i~d~i~~~~i~lViNt~~g~ 1014 (1068)
T PRK12815 942 SVRD-EDKEAVAELARRFEQLGFKLLATEGTANWLAEEGITTGVVEKVQEG------SPSLLERIKQHRIVLVVNTSLSD 1014 (1068)
T ss_pred EECC-CCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCEEEEEECCCCC------CCCHHHHHHCCCEEEEEECCCCC
T ss_conf 9610-0178999999999987998998658999999779836997136789------81299998679857999799998
Q ss_pred CCHHHHHHHH---HHCCCCEEEECCHHHHHHHHHH
Q ss_conf 8589999999---9769958994998999999999
Q gi|254781049|r 362 ANVDIGNRLI---AESGLNVITAIDLDDAAQKIVH 393 (398)
Q Consensus 362 tn~~~g~~il---~~~g~~~~~~~~~~~A~~~~v~ 393 (398)
T Consensus 1015 ~~~~D~~~IRr~Av~~~IP~~Ttl~~A~a~v~al~ 1049 (1068)
T PRK12815 1015 SASEDAIKIRDEALTTHIPVFTSLETAQAFLDVLE 1049 (1068)
T ss_pred CCCCCHHHHHHHHHHHCCCEEECHHHHHHHHHHHH
T ss_conf 76654399999999829988927999999999999