HHsearch alignment for GI: 254781049 and conserved domain: PTZ00187
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional.
Probab=97.34 E-value=0.005 Score=39.64 Aligned_cols=127 Identities=17% Similarity=0.320 Sum_probs=95.5
Q ss_pred EECCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCC-CHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 42288179995550368999999996589962488427888-98999999999861998658999635861328999999
Q gi|254781049|r 263 IALDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVGGGA-DQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKG 341 (398)
Q Consensus 263 v~LdG~Ig~~vnGaGlamatmD~i~~~Gg~pANFlD~gG~a-~~e~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~g 341 (398)
T Consensus 158 i~~pG~VGivSRSGTLTyE~~~~lt~~G~GqSt~VgIGGDpi~Gt~f~d~L~~f~~D~~T~aIVl--iGEIGG~~E--e~ 233 (309)
T PTZ00187 158 IHQKGKIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIIL--IGEIGGTAE--EE 233 (309)
T ss_pred HCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEE--EECCCCHHH--HH
T ss_conf 55788358994477528999999986698669999846987589789999999862957658999--816598699--99
Q ss_pred HHHHHHHCCCCCCEEEECCCCCHHHHHHH--------------------HHHCCCCEEEECCHHHHHHHHHHHH
Q ss_conf 99999972999879997489858999999--------------------9976995899499899999999985
Q gi|254781049|r 342 ILSAVKEVKINIPLVMRLEGANVDIGNRL--------------------IAESGLNVITAIDLDDAAQKIVHAV 395 (398)
Q Consensus 342 ii~a~~~~~~~~pivvRl~Gtn~~~g~~i--------------------l~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398)
T Consensus 234 aA~~Ik~~~~~KPVva~IAG~~AP~gkrmGHAGAIi~~~~gta~~K~~al~~AGv~--Va~~p~ei~~~v~~~l 305 (309)
T PTZ00187 234 AADWIKNNPTKKPVVSFIAGITAPPGRRMGHAGAIVSGGKGTAKGKIEALRAAGVT--VSKSPAQLGKTMAEVM 305 (309)
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHEEECCCCCCHHHHHHHHHHCCCE--ECCCHHHHHHHHHHHH
T ss_conf 99999966999988999812568999704320001028988899999999988698--7899999999999999