HHsearch alignment for GI: 254781049 and conserved domain: TIGR00514
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase; InterPro: IPR004549 This family represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase (6.4.1.2 from EC) is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase (6.3.4.14 from EC), and two subunits of carboxyl transferase in a 2:2 complex. In the first step of long-chain fatty acid synthesis, biotin carboxylase catalyses the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coA. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase). In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.; GO: 0016874 ligase activity.
Probab=98.76 E-value=1.2e-07 Score=70.17 Aligned_cols=106 Identities=25% Similarity=0.435 Sum_probs=82.2
Q ss_pred HHHHHHHHCCCCCCCC--E-EECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHH
Q ss_conf 9999999868988881--5-747999999999872998699971213687656565567777777079958999999999
Q gi|254781049|r 7 QAKALLRKYNVPVAKG--V-VISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDI 83 (398)
Q Consensus 7 qaK~lL~~~GIpvp~g--~-~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a 83 (398)
T Consensus 118 ~A~~~mKkaGVP~VPGS~GP~~~~~~e~~~~A~~IGyPv-~IKA~--AGGGGR------------GmR~vR~~~El~~~~ 182 (451)
T TIGR00514 118 TAKETMKKAGVPVVPGSDGPLVEDEEEAVRIAKEIGYPV-IIKAT--AGGGGR------------GMRVVREEDELVKLI 182 (451)
T ss_pred HHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHCCCCE-EEEEE--CCCCCC------------EEEEECCHHHHHHHH
T ss_conf 999999748876623888863102788999997478968-99962--589972------------258862868999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEE
Q ss_conf 9861876544212222244330110345556505899999834778048998
Q gi|254781049|r 84 REILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIA 135 (398)
Q Consensus 84 ~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~ 135 (398)
T Consensus 183 ~~-------a~~EA~AAF~N~~VYiEKfienPRH~E~QVLAD-~~GN~vyLg 226 (451)
T TIGR00514 183 KA-------ARAEAAAAFNNDGVYIEKFIENPRHVEIQVLAD-KYGNVVYLG 226 (451)
T ss_pred HH-------HHHHHHHCCCCCCEEEEEEECCCCEEEEEEEEC-CCCCEEEEC
T ss_conf 99-------999997402879627863336994079998751-788878971