HHsearch alignment for GI: 254781049 and conserved domain: TIGR01016
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit; InterPro: IPR005809 There are four different enzymes that share a similar catalytic mechanism which involves the phosphorylation by ATP (or GTP) of a specific histidine residue in the active site. These enzymes are: ATP citrate-lyase (4.1.3.8 from EC) , the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues, catalyzes the formation of acetyl-CoA and oxaloacetate from citrate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. ATP-citrate lyase is a tetramer of identical subunits; Succinyl-CoA ligase (GDP-forming) (6.2.1.4 from EC) is a mitochondrial enzyme that catalyzes the substrate level phosphorylation step of the tricarboxylic acid cycle: the formation of succinyl-CoA from succinate with a concomitant hydrolysis of GTP to GDP and phosphate. This enzyme is a dimer composed of an alpha and a beta subunits; Succinyl-CoA ligase (ADP-forming) (6.2.1.5 from EC) is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle, coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits; and Malate-CoA ligase (6.2.1.9 from EC) (malyl-CoA synthetase) , is a bacterial enzyme that forms malyl-CoA from malate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. Malate-CoA ligase is composed of two different subunits. This entry corresponds to a conserved region located in the first half of ATP citrate lyase and in the beta subunits of succinyl-CoA ligases and malate-CoA ligase. ; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=100.00 E-value=0 Score=1126.33 Aligned_cols=386 Identities=51% Similarity=0.845 Sum_probs=382.7
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHH
Q ss_conf 98657999999998689888815747999999999872998699971213687656565567777777079958999999
Q gi|254781049|r 1 MNIHEYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVI 80 (398)
Q Consensus 1 M~L~EyqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~ 80 (398)
T Consensus 1 M~LHEYqAK~if~~YGiPvp~g~v~~s~~e~~~~~~~~g~~~~VvKaQVhaGGRGKA----------GGv~~a~s~ee~~ 70 (389)
T TIGR01016 1 MKLHEYQAKEIFAKYGIPVPEGEVATSVEEVEEIAEELGEGKVVVKAQVHAGGRGKA----------GGVKVAKSKEEAL 70 (389)
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHCCCCCEEEEEEEEECCCCCC----------CCEEEEECHHHHH
T ss_conf 986435589999847896788600416789999999707997899987732671121----------5768970879999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHHHHEEEECC
Q ss_conf 99998618765442122222443301103455565058999998347780489984478840245557483122033214
Q gi|254781049|r 81 SDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLID 160 (398)
Q Consensus 81 ~~a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~GGvdIE~va~~~p~~I~~~~id 160 (398)
T Consensus 71 ~~a~~llg~~l~t~Qt~~~g~~VnkiliE~~~~I~kEyY~s~v~DR~~~~pv~maS~eGGvdIEEvA~~~Pe~I~k~~id 150 (389)
T TIGR01016 71 KAAEKLLGKELKTFQTDPLGQPVNKILIEEKIDIDKEYYLSIVIDRSAKKPVIMASTEGGVDIEEVAEKSPEKIIKVAID 150 (389)
T ss_pred HHHHHHHCCEEEEEECCCCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHCCCCCEEEEEEC
T ss_conf 99998708915786407888634478732677412001477999804787179970677841789952195716888717
Q ss_pred CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEEEEEECCCHHHHHHHHH
Q ss_conf 44578957888788751988899885999999998999955975102326799059967994001321573556410278
Q gi|254781049|r 161 PLIGVTSEDVASLCDMLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDSKISFDDNALYRHLDIQ 240 (398)
Q Consensus 161 ~~~gl~~~~~~~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~Da~liEINPLvvt~dg~vvAlDAKi~iDDnA~fR~~~~~ 240 (398)
T Consensus 151 p~~~~~pYq~R~~a~~~~l~~~~~~~~~~i~~~Ly~~F~e~Da~L~EINPLViT~~G~L~alDAKl~~DDnALFRH~~l~ 230 (389)
T TIGR01016 151 PLTGLLPYQARELAKKLGLEGELIKQVASIIKKLYQIFLEKDASLVEINPLVITKDGNLVALDAKLTIDDNALFRHPDLE 230 (389)
T ss_pred CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEECCCCCEEEEEEECCCCCCHHCCCCCHH
T ss_conf 77777878999999970897057788999999999988753710254526368789888998332244655100671168
Q ss_pred HHHCCCCCCHHHHHHHHCCCCEEECCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 63100015622245775398644228817999555036899999999658996248842788898999999999861998
Q gi|254781049|r 241 ELRDVSEEDSREIEAKQHNLSYIALDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIITSDSS 320 (398)
Q Consensus 241 ~~~d~~~~~~~E~~A~~~~l~yv~LdG~Ig~~vnGaGlamatmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il~~~~ 320 (398)
T Consensus 231 ~~~D~~~~~~~e~~A~~~gL~Yv~LdGnIGc~vNGAGLAMaTMDIiKl~GG~PANFLDvGGGA~~e~v~eA~~~vLsD~~ 310 (389)
T TIGR01016 231 EMEDYTQEDQLEVEAKQLGLNYVKLDGNIGCMVNGAGLAMATMDIIKLYGGKPANFLDVGGGASEERVKEALKLVLSDKS 310 (389)
T ss_pred HHCCCCCCCHHHHHHHHHCCCEEEECCCEEEECCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 76388877733799986188368854770797043567899999999718895302245878898999999898735998
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCC---CCEEEECCHHHHHHHHHHHHH
Q ss_conf 6589996358613289999999999997299987999748985899999999769---958994998999999999850
Q gi|254781049|r 321 VKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLEGANVDIGNRLIAESG---LNVITAIDLDDAAQKIVHAVK 396 (398)
Q Consensus 321 vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~il~~~g---~~~~~~~~~~~A~~~~v~~~k 396 (398)
T Consensus 311 VKvvfiNIFGGI~RCD~vA~G~v~A~~~~~~~VP~VvRL~GTN~E~G~~iL~e~gkdr~ni~~~~sm~~aA~kaV~~~~ 389 (389)
T TIGR01016 311 VKVVFINIFGGITRCDEVAKGLVEALKDVGVNVPVVVRLEGTNVEEGKKILQESGKDRLNIIFATSMEEAAEKAVELAK 389 (389)
T ss_pred CEEEEEEECCCEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 2089997068600187887889999831885368789815788788889999727677886322687889999999839