>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, ATPase subunit; InterPro: IPR005875 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This family represents PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, which catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. PurK belongs to the ATP grasp superfamily of C-N ligase enzymes. Each subunit of PurK is composed of three domains (A, B, and C). The B domain contains a flexible, glycine-rich loop (B loop, T123-G130) that is disordered in the sulphate-PurK structure and becomes ordered in the MgADP-PurK structure. MgADP is wedged between the B and C domains, as with all members of the ATP grasp superfamily. Other enzymes in this superfamily contain a conserved Omega loop proposed to interact with the B loop, define the specificity of their nonnucleotide substrate, and protect the acyl phosphate intermediate formed from this substrate. PurK contains a minimal Omega loop without conserved residues. In the reaction catalyzed by PurK, carboxyphosphate is the putative acyl phosphate intermediate. The sulphate of the sulphate ion-liganded PurK interacts electrostatically with Arg 242 and the backbone amide group of Asn 245, components of the J loop of the C domain. This sulphate may reveal the location of the carboxyphosphate binding site. Conserved residues within the C-terminus of the C domain define a pocket that is proposed to bind AIR in collaboration with an N-terminal strand loop helix motif in the A domain (P loop, G8-L1). The P loop is proposed to bind the phosphate of AIR on the basis of similar binding sites observed in PurN and PurE and proposed in PurD and PurT, four other enzymes in the purine pathway .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.

Probab=98.60  E-value=9.7e-07  Score=64.08  Aligned_cols=121  Identities=22%  Similarity=0.278  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEC--CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHH
Q ss_conf             7999999998689888815747--99999999987299869997121368765656556777777707995899999999
Q gi|254781049|r    5 EYQAKALLRKYNVPVAKGVVIS--SVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISD   82 (398)
Q Consensus         5 EyqaK~lL~~~GIpvp~g~~a~--s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~   82 (398)
T Consensus       103 k~~qK~~L~~~g~~vp~f~~~~~~~~~~~~~~~~~~g~p~-VlK~~~g-------GY------DGrGq~~i~~~~~~~~~  168 (386)
T TIGR01161       103 KLTQKQFLQKLGLPVPPFVVIEIKDEEELDSALQELGFPV-VLKARRG-------GY------DGRGQFVIKSEADLPQA  168 (386)
T ss_pred             HHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHCCCCE-EEEEEEC-------CC------CCCCCEEECCHHHHHHH
T ss_conf             5899999996689988412022368425789998739847-9984206-------52------77310897474328899


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHH--HHEEEECC
Q ss_conf             9986187654421222224433011034555650589999983477804899844788402455574831--22033214
Q gi|254781049|r   83 IREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQ--KIFKLLID  160 (398)
Q Consensus        83 a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~GGvdIE~va~~~p~--~I~~~~id  160 (398)
T Consensus       169 ~~~~~~~~-------------~~~~~E~fV~F~~Elsv~vaR~--~~G~~~~Y-P~----ven~---~~ddagIl~~~~a  225 (386)
T TIGR01161       169 LKELGDKE-------------EELIVEEFVPFERELSVIVARS--ADGEIAFY-PV----VENI---HQDDAGILRLVVA  225 (386)
T ss_pred             HHHCCCCC-------------EEEEEEECCCCCEEEEEEEEEC--CCCCEEEC-CC----EEEE---EECCCCEEEEEEE
T ss_conf             98528884-------------0589852356200699999977--89748882-86----1235---6527787789863


Q ss_pred             CC
Q ss_conf             44
Q gi|254781049|r  161 PL  162 (398)
Q Consensus       161 ~~  162 (398)
T Consensus       226 PA  227 (386)
T TIGR01161       226 PA  227 (386)
T ss_pred             CC
T ss_conf             37