HHsearch alignment for GI: 254781049 and conserved domain: TIGR01235

>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys. Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis. ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=97.75  E-value=0.00062  Score=45.60  Aligned_cols=167  Identities=23%  Similarity=0.332  Sum_probs=100.1

Q ss_pred             HHHHHHHHCCCCCCCC--EEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH
Q ss_conf             9999999868988881--57479999999998729986999712136876565655677777770799589999999999
Q gi|254781049|r    7 QAKALLRKYNVPVAKG--VVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIR   84 (398)
Q Consensus         7 qaK~lL~~~GIpvp~g--~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~   84 (398)
T Consensus       122 ~AR~~A~~aGvPvvPgt~Gp~~t~eev~~f~~~~GYPv-i~KAs~GGGGRG--------------MRvvR~~~dv~~~~~  186 (1169)
T TIGR01235       122 AARNLAIKAGVPVVPGTDGPVETLEEVLDFAKAIGYPV-IIKASYGGGGRG--------------MRVVRSEEDVADAFQ  186 (1169)
T ss_pred             HHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHCCCCE-EEEECCCCCCCC--------------CEEECCHHHHHHHHH
T ss_conf             99988887788763688687525999999997569958-987216889720--------------168607567999988


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHHHHEEEECCCCCC
Q ss_conf             86187654421222224433011034555650589999983477804899844788402455574831220332144457
Q gi|254781049|r   85 EILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIG  164 (398)
Q Consensus        85 ~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~GGvdIE~va~~~p~~I~~~~id~~~g  164 (398)
T Consensus       187 rA-~sEA~A----AFGn--d~~yvEklie~pkHiEvQ~LGD-~~GNVVHLFER--DCS---VQRRhQKV---vE~APA~~  250 (1169)
T TIGR01235       187 RA-KSEAKA----AFGN--DEVYVEKLIERPKHIEVQLLGD-KHGNVVHLFER--DCS---VQRRHQKV---VEVAPAPS  250 (1169)
T ss_pred             HH-HHHHHH----CCCC--CEEEEEEECCCCCEEEEEEEEC-CCCCEEEEEEC--CCC---CEEECCEE---EEECCCCC
T ss_conf             87-688731----0489--8069851024882078987634-88987888750--776---20005507---88678877


Q ss_pred             CCHHHH-------HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCEEE
Q ss_conf             895788-------8788751988899885999999998999955-97510232679
Q gi|254781049|r  165 VTSEDV-------ASLCDMLELQGQARIDGGDLFPNLYKAFCDK-DMSLLEINPLI  212 (398)
Q Consensus       165 l~~~~~-------~~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~-Da~liEINPLv  212 (398)
T Consensus       251 Ls~e~Rd~~~~~AvkLAk~~nY~nAGTvEF------L~d--~~~G~FYFIEvNpRi  298 (1169)
T TIGR01235       251 LSREVRDEIAEYAVKLAKEVNYINAGTVEF------LVD--NDTGKFYFIEVNPRI  298 (1169)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCCEEE------EEE--CCCCCEEEEEECCCE
T ss_conf             888899999999999987428988872488------555--488937789988800