HHsearch alignment for GI: 254781049 and conserved domain: TIGR01235
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys. Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis. ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=97.75 E-value=0.00062 Score=45.60 Aligned_cols=167 Identities=23% Similarity=0.332 Sum_probs=100.1
Q ss_pred HHHHHHHHCCCCCCCC--EEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH
Q ss_conf 9999999868988881--57479999999998729986999712136876565655677777770799589999999999
Q gi|254781049|r 7 QAKALLRKYNVPVAKG--VVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIR 84 (398)
Q Consensus 7 qaK~lL~~~GIpvp~g--~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~ 84 (398)
T Consensus 122 ~AR~~A~~aGvPvvPgt~Gp~~t~eev~~f~~~~GYPv-i~KAs~GGGGRG--------------MRvvR~~~dv~~~~~ 186 (1169)
T TIGR01235 122 AARNLAIKAGVPVVPGTDGPVETLEEVLDFAKAIGYPV-IIKASYGGGGRG--------------MRVVRSEEDVADAFQ 186 (1169)
T ss_pred HHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHCCCCE-EEEECCCCCCCC--------------CEEECCHHHHHHHHH
T ss_conf 99988887788763688687525999999997569958-987216889720--------------168607567999988
Q ss_pred HHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHHHHEEEECCCCCC
Q ss_conf 86187654421222224433011034555650589999983477804899844788402455574831220332144457
Q gi|254781049|r 85 EILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIG 164 (398)
Q Consensus 85 ~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~GGvdIE~va~~~p~~I~~~~id~~~g 164 (398)
T Consensus 187 rA-~sEA~A----AFGn--d~~yvEklie~pkHiEvQ~LGD-~~GNVVHLFER--DCS---VQRRhQKV---vE~APA~~ 250 (1169)
T TIGR01235 187 RA-KSEAKA----AFGN--DEVYVEKLIERPKHIEVQLLGD-KHGNVVHLFER--DCS---VQRRHQKV---VEVAPAPS 250 (1169)
T ss_pred HH-HHHHHH----CCCC--CEEEEEEECCCCCEEEEEEEEC-CCCCEEEEEEC--CCC---CEEECCEE---EEECCCCC
T ss_conf 87-688731----0489--8069851024882078987634-88987888750--776---20005507---88678877
Q ss_pred CCHHHH-------HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCEEE
Q ss_conf 895788-------8788751988899885999999998999955-97510232679
Q gi|254781049|r 165 VTSEDV-------ASLCDMLELQGQARIDGGDLFPNLYKAFCDK-DMSLLEINPLI 212 (398)
Q Consensus 165 l~~~~~-------~~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~-Da~liEINPLv 212 (398)
T Consensus 251 Ls~e~Rd~~~~~AvkLAk~~nY~nAGTvEF------L~d--~~~G~FYFIEvNpRi 298 (1169)
T TIGR01235 251 LSREVRDEIAEYAVKLAKEVNYINAGTVEF------LVD--NDTGKFYFIEVNPRI 298 (1169)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCEEE------EEE--CCCCCEEEEEECCCE
T ss_conf 888899999999999987428988872488------555--488937789988800