HHsearch alignment for GI: 254781049 and conserved domain: cd01537
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=92.25 E-value=0.93 Score=24.68 Aligned_cols=99 Identities=20% Similarity=0.257 Sum_probs=60.2
Q ss_pred HHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHH-HCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC---EEEE
Q ss_conf 999996589962488427888989999999998-619986589996358613289999999999997299987---9997
Q gi|254781049|r 283 MDIIKLYGGAPANFLDVGGGADQDKVAAAFKII-TSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP---LVMR 358 (398)
Q Consensus 283 mD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~i-l~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p---ivvR 358 (398)
T Consensus 141 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~dai~-------~~~d~~A~gv~~al~~~g~~ip~di~ivg 212 (264)
T cd01537 141 KDALKEAGPIEIVLVQE-GDWDAEKGYQAAEELLTAHPDPTAIF-------AANDDMALGALRALREAGLRVPDDISVIG 212 (264)
T ss_pred HHHHHHCCCCCCEEEEE-CCCCHHHHHHHHHHHHHHCCCCEEEE-------ECCHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 99999779998537995-79998999999999985089976999-------89869999999999974999999839999
Q ss_pred CCCCCHHHHHHHHHHCCCCEE-EECCHHHHHHHHHHHH
Q ss_conf 489858999999997699589-9499899999999985
Q gi|254781049|r 359 LEGANVDIGNRLIAESGLNVI-TAIDLDDAAQKIVHAV 395 (398)
Q Consensus 359 l~Gtn~~~g~~il~~~g~~~~-~~~~~~~A~~~~v~~~ 395 (398)
T Consensus 213 ~d~~--~~~~----~~~p~ltti~~~~~~~g~~a~~~l 244 (264)
T cd01537 213 FDGT--PEAL----LAGPPLTTVRQPPDELGRAAVELL 244 (264)
T ss_pred ECCH--HHHH----HHCCCEEEEECCHHHHHHHHHHHH
T ss_conf 9974--9999----719982999839999999999999