HHsearch alignment for GI: 254781049 and conserved domain: cd01537

>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=92.25  E-value=0.93  Score=24.68  Aligned_cols=99  Identities=20%  Similarity=0.257  Sum_probs=60.2

Q ss_pred             HHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHH-HCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC---EEEE
Q ss_conf             999996589962488427888989999999998-619986589996358613289999999999997299987---9997
Q gi|254781049|r  283 MDIIKLYGGAPANFLDVGGGADQDKVAAAFKII-TSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP---LVMR  358 (398)
Q Consensus       283 mD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~i-l~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p---ivvR  358 (398)
T Consensus       141 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~dai~-------~~~d~~A~gv~~al~~~g~~ip~di~ivg  212 (264)
T cd01537         141 KDALKEAGPIEIVLVQE-GDWDAEKGYQAAEELLTAHPDPTAIF-------AANDDMALGALRALREAGLRVPDDISVIG  212 (264)
T ss_pred             HHHHHHCCCCCCEEEEE-CCCCHHHHHHHHHHHHHHCCCCEEEE-------ECCHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf             99999779998537995-79998999999999985089976999-------89869999999999974999999839999


Q ss_pred             CCCCCHHHHHHHHHHCCCCEE-EECCHHHHHHHHHHHH
Q ss_conf             489858999999997699589-9499899999999985
Q gi|254781049|r  359 LEGANVDIGNRLIAESGLNVI-TAIDLDDAAQKIVHAV  395 (398)
Q Consensus       359 l~Gtn~~~g~~il~~~g~~~~-~~~~~~~A~~~~v~~~  395 (398)
T Consensus       213 ~d~~--~~~~----~~~p~ltti~~~~~~~g~~a~~~l  244 (264)
T cd01537         213 FDGT--PEAL----LAGPPLTTVRQPPDELGRAAVELL  244 (264)
T ss_pred             ECCH--HHHH----HHCCCEEEEECCHHHHHHHHHHHH
T ss_conf             9974--9999----719982999839999999999999