HHsearch alignment for GI: 254781049 and conserved domain: cd06270

>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=92.91  E-value=0.77  Score=25.23  Aligned_cols=104  Identities=18%  Similarity=0.214  Sum_probs=61.6

Q ss_pred             HHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf             9999965899624884278889899999999986-199865899963586132899999999999972999879997489
Q gi|254781049|r  283 MDIIKLYGGAPANFLDVGGGADQDKVAAAFKIIT-SDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLEG  361 (398)
Q Consensus       283 mD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il-~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~G  361 (398)
T Consensus       139 ~~al~~~gl~~~~~~i~~~~~~~~~g~~~~~~ll~~~~~~~ai~-------~~nD~~A~g~~~~l~~~g~~vP~disvig  211 (268)
T cd06270         139 RDALAEAGIALDESLIIEGDFTEEGGYAAMQELLARGAPFTAVF-------CANDEMAAGAISALREHGISVPQDVSIIG  211 (268)
T ss_pred             HHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEE-------ECCHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf             99999859997800476167767889998899995699987455-------33779999999999982999999769999


Q ss_pred             CCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH
Q ss_conf             8589999999976995899499899999999985
Q gi|254781049|r  362 ANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV  395 (398)
Q Consensus       362 tn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~  395 (398)
T Consensus       212 fdd~~~~~~~-~P~LTt-i~~~~~~~g~~A~~~L  243 (268)
T cd06270         212 FDDVLLARYL-YPKLTT-VHYPIEEMAQMAAKLA  243 (268)
T ss_pred             ECCHHHHHHC-CCCCEE-EECCHHHHHHHHHHHH
T ss_conf             8986899714-899549-9649999999999999