HHsearch alignment for GI: 254781049 and conserved domain: cd06285

>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=94.11  E-value=0.49  Score=26.51  Aligned_cols=103  Identities=17%  Similarity=0.105  Sum_probs=62.0

Q ss_pred             HHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
Q ss_conf             999965899624884278889899999999986-1998658999635861328999999999999729998799974898
Q gi|254781049|r  284 DIIKLYGGAPANFLDVGGGADQDKVAAAFKIIT-SDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLEGA  362 (398)
Q Consensus       284 D~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il-~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~Gt  362 (398)
T Consensus       138 ~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~nD~~A~g~~~~l~~~g~~iP~di~iigf  210 (265)
T cd06285         138 AALAEAGIEVPPERIVYSGFDIEGGEAAAEKLLRSDSPPTAIF-------AVNDFAAIGVMGAARDRGLRVPDDVALVGY  210 (265)
T ss_pred             HHHHHCCCCCCHHHEECCCCCHHHHHHHHHHHHHCCCCCCCEE-------CCCHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf             9999869998756601366215569999999985699988100-------378899999999999859999998799998


Q ss_pred             CHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH
Q ss_conf             589999999976995899499899999999985
Q gi|254781049|r  363 NVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV  395 (398)
Q Consensus       363 n~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~  395 (398)
T Consensus       211 d~~~~~~~~~-p~LTt-i~q~~~~ig~~A~~~l  241 (265)
T cd06285         211 NDIPLVARLP-VPLTT-VRSPFHQIGRTALRLL  241 (265)
T ss_pred             CCHHHHHHCC-CCCEE-EECCHHHHHHHHHHHH
T ss_conf             7828997078-99579-9729999999999999