HHsearch alignment for GI: 254781049 and conserved domain: cd06285
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=94.11 E-value=0.49 Score=26.51 Aligned_cols=103 Identities=17% Similarity=0.105 Sum_probs=62.0
Q ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
Q ss_conf 999965899624884278889899999999986-1998658999635861328999999999999729998799974898
Q gi|254781049|r 284 DIIKLYGGAPANFLDVGGGADQDKVAAAFKIIT-SDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLEGA 362 (398)
Q Consensus 284 D~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il-~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~Gt 362 (398)
T Consensus 138 ~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~nD~~A~g~~~~l~~~g~~iP~di~iigf 210 (265)
T cd06285 138 AALAEAGIEVPPERIVYSGFDIEGGEAAAEKLLRSDSPPTAIF-------AVNDFAAIGVMGAARDRGLRVPDDVALVGY 210 (265)
T ss_pred HHHHHCCCCCCHHHEECCCCCHHHHHHHHHHHHHCCCCCCCEE-------CCCHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 9999869998756601366215569999999985699988100-------378899999999999859999998799998
Q ss_pred CHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH
Q ss_conf 589999999976995899499899999999985
Q gi|254781049|r 363 NVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 (398)
Q Consensus 363 n~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398)
T Consensus 211 d~~~~~~~~~-p~LTt-i~q~~~~ig~~A~~~l 241 (265)
T cd06285 211 NDIPLVARLP-VPLTT-VRSPFHQIGRTALRLL 241 (265)
T ss_pred CCHHHHHHCC-CCCEE-EECCHHHHHHHHHHHH
T ss_conf 7828997078-99579-9729999999999999